Multiple sequence alignment - TraesCS4B01G112300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G112300 chr4B 100.000 7528 0 0 1 7528 126329008 126321481 0.000000e+00 13902.0
1 TraesCS4B01G112300 chr4B 80.228 263 36 11 4283 4533 90380996 90381254 4.640000e-42 183.0
2 TraesCS4B01G112300 chr4B 79.365 252 36 10 4283 4522 598514711 598514958 6.040000e-36 163.0
3 TraesCS4B01G112300 chr4B 95.181 83 4 0 4845 4927 25384014 25384096 1.700000e-26 132.0
4 TraesCS4B01G112300 chr4D 94.308 2530 104 13 1908 4421 89426425 89423920 0.000000e+00 3838.0
5 TraesCS4B01G112300 chr4D 94.195 2446 83 19 5140 7528 89423579 89421136 0.000000e+00 3675.0
6 TraesCS4B01G112300 chr4D 94.090 1726 59 13 28 1734 89428371 89426670 0.000000e+00 2582.0
7 TraesCS4B01G112300 chr4D 97.361 341 8 1 4514 4853 89423918 89423578 5.060000e-161 579.0
8 TraesCS4B01G112300 chr4D 89.617 183 12 4 1731 1911 89426628 89426451 7.600000e-55 226.0
9 TraesCS4B01G112300 chr4D 96.341 82 2 1 4848 4929 238640162 238640242 4.740000e-27 134.0
10 TraesCS4B01G112300 chr4D 97.403 77 2 0 4851 4927 464990729 464990653 1.700000e-26 132.0
11 TraesCS4B01G112300 chr4D 97.368 76 2 0 4852 4927 91867809 91867734 6.130000e-26 130.0
12 TraesCS4B01G112300 chr4D 97.368 76 2 0 4852 4927 92004538 92004463 6.130000e-26 130.0
13 TraesCS4B01G112300 chr4A 94.612 2394 95 15 1908 4284 501965849 501963473 0.000000e+00 3675.0
14 TraesCS4B01G112300 chr4A 93.691 1696 52 17 7 1661 501968006 501966325 0.000000e+00 2488.0
15 TraesCS4B01G112300 chr4A 91.874 1686 72 17 5899 7528 501962342 501960666 0.000000e+00 2294.0
16 TraesCS4B01G112300 chr4A 93.503 785 25 8 5140 5906 501963153 501962377 0.000000e+00 1144.0
17 TraesCS4B01G112300 chr4A 97.205 322 9 0 4532 4853 501963473 501963152 5.140000e-151 545.0
18 TraesCS4B01G112300 chr4A 89.617 183 12 4 1731 1911 501966052 501965875 7.600000e-55 226.0
19 TraesCS4B01G112300 chr4A 96.183 131 5 0 4925 5055 556761756 556761626 1.650000e-51 215.0
20 TraesCS4B01G112300 chr4A 90.244 82 6 2 1653 1734 501966173 501966094 1.030000e-18 106.0
21 TraesCS4B01G112300 chr7A 88.014 292 29 4 4851 5141 454049157 454048871 2.600000e-89 340.0
22 TraesCS4B01G112300 chr2B 85.603 257 28 7 4883 5136 154903565 154903815 2.080000e-65 261.0
23 TraesCS4B01G112300 chr2B 80.989 263 29 11 4280 4533 594837035 594837285 9.970000e-44 189.0
24 TraesCS4B01G112300 chr2B 80.228 263 36 12 4283 4533 494954050 494953792 4.640000e-42 183.0
25 TraesCS4B01G112300 chr2B 95.536 112 5 0 5021 5132 730617123 730617012 6.000000e-41 180.0
26 TraesCS4B01G112300 chr2B 93.182 88 6 0 4840 4927 194640960 194641047 6.130000e-26 130.0
27 TraesCS4B01G112300 chr5B 84.701 268 31 9 4850 5115 469980480 469980221 7.490000e-65 259.0
28 TraesCS4B01G112300 chr5B 80.556 252 47 2 1235 1485 222367265 222367015 7.710000e-45 193.0
29 TraesCS4B01G112300 chr5B 83.974 156 19 3 4383 4533 418373386 418373540 2.190000e-30 145.0
30 TraesCS4B01G112300 chr7D 84.848 264 29 7 4279 4533 113580927 113581188 9.690000e-64 255.0
31 TraesCS4B01G112300 chr7D 82.274 299 31 16 4854 5145 535748338 535748621 9.760000e-59 239.0
32 TraesCS4B01G112300 chr7D 93.333 90 2 4 4838 4927 534851852 534851937 6.130000e-26 130.0
33 TraesCS4B01G112300 chr2A 81.395 301 49 6 4852 5148 674600118 674599821 9.760000e-59 239.0
34 TraesCS4B01G112300 chr2A 81.395 301 49 6 4852 5148 674715091 674714794 9.760000e-59 239.0
35 TraesCS4B01G112300 chr2A 98.077 104 1 1 5051 5154 158458718 158458820 6.000000e-41 180.0
36 TraesCS4B01G112300 chr2A 96.330 109 4 0 5051 5159 746757080 746756972 6.000000e-41 180.0
37 TraesCS4B01G112300 chr7B 97.692 130 3 0 4926 5055 678632484 678632355 2.730000e-54 224.0
38 TraesCS4B01G112300 chr7B 94.964 139 6 1 4925 5062 461475693 461475555 4.570000e-52 217.0
39 TraesCS4B01G112300 chr7B 78.146 302 57 9 4847 5142 570239214 570239512 4.640000e-42 183.0
40 TraesCS4B01G112300 chr6D 91.195 159 9 4 4914 5068 54003315 54003158 2.130000e-50 211.0
41 TraesCS4B01G112300 chr6D 97.500 80 2 0 4848 4927 323695973 323696052 3.660000e-28 137.0
42 TraesCS4B01G112300 chr6D 91.579 95 4 4 4836 4927 138106826 138106733 2.200000e-25 128.0
43 TraesCS4B01G112300 chr3B 92.568 148 9 2 4908 5055 383716475 383716620 2.130000e-50 211.0
44 TraesCS4B01G112300 chr3B 91.892 148 11 1 4276 4423 529407785 529407931 9.900000e-49 206.0
45 TraesCS4B01G112300 chr3B 90.789 152 14 0 4272 4423 654649881 654649730 3.560000e-48 204.0
46 TraesCS4B01G112300 chr3A 92.414 145 11 0 4279 4423 627965085 627964941 2.750000e-49 207.0
47 TraesCS4B01G112300 chr3A 84.314 153 18 3 4386 4533 531452171 531452020 2.190000e-30 145.0
48 TraesCS4B01G112300 chr3A 100.000 30 0 0 4505 4534 657040290 657040319 1.000000e-03 56.5
49 TraesCS4B01G112300 chr1A 91.026 156 8 6 4901 5053 539330553 539330705 9.900000e-49 206.0
50 TraesCS4B01G112300 chr5D 80.556 252 47 2 1235 1485 209309672 209309422 7.710000e-45 193.0
51 TraesCS4B01G112300 chr5D 96.296 81 2 1 4847 4927 100549546 100549467 1.700000e-26 132.0
52 TraesCS4B01G112300 chr5D 96.296 81 2 1 4848 4927 214084827 214084907 1.700000e-26 132.0
53 TraesCS4B01G112300 chr5A 80.159 252 48 2 1235 1485 270177652 270177402 3.590000e-43 187.0
54 TraesCS4B01G112300 chr5A 96.875 96 1 1 4420 4515 362378820 362378913 7.820000e-35 159.0
55 TraesCS4B01G112300 chr3D 83.246 191 24 4 4348 4533 520722792 520722605 1.300000e-37 169.0
56 TraesCS4B01G112300 chr2D 93.258 89 4 2 4841 4927 628268518 628268606 6.130000e-26 130.0
57 TraesCS4B01G112300 chr2D 91.398 93 7 1 4836 4927 647573470 647573562 7.930000e-25 126.0
58 TraesCS4B01G112300 chrUn 96.053 76 3 0 4852 4927 351692924 351692999 2.850000e-24 124.0
59 TraesCS4B01G112300 chrUn 96.053 76 3 0 4852 4927 351695175 351695250 2.850000e-24 124.0
60 TraesCS4B01G112300 chrUn 94.937 79 3 1 4849 4927 88818617 88818694 1.030000e-23 122.0
61 TraesCS4B01G112300 chrUn 94.937 79 3 1 4849 4927 115400895 115400818 1.030000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G112300 chr4B 126321481 126329008 7527 True 13902.000000 13902 100.000000 1 7528 1 chr4B.!!$R1 7527
1 TraesCS4B01G112300 chr4D 89421136 89428371 7235 True 2180.000000 3838 93.914200 28 7528 5 chr4D.!!$R4 7500
2 TraesCS4B01G112300 chr4A 501960666 501968006 7340 True 1496.857143 3675 92.963714 7 7528 7 chr4A.!!$R2 7521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 657 0.038166 AGAAGGAGCGCCAATGGAAA 59.962 50.0 9.88 0.00 36.29 3.13 F
1656 1707 0.251608 GGGCACAGTGGGGTGTTATT 60.252 55.0 1.84 0.00 40.89 1.40 F
2703 2993 0.037447 ACCAAGAAGCCAGAGAAGCC 59.963 55.0 0.00 0.00 0.00 4.35 F
2853 3143 1.177401 GGGGACAGAAAATGCCTCAC 58.823 55.0 0.00 0.00 0.00 3.51 F
4712 5028 0.798776 CACCCAGAAACATGACGAGC 59.201 55.0 0.00 0.00 0.00 5.03 F
4941 5257 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.00 0.00 4.12 F
6249 6630 0.179163 CGCCGAGAAATTTCAAGGCC 60.179 55.0 32.56 22.19 44.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2440 0.394625 ACTCCCAGACTAGCGGAGAC 60.395 60.0 17.94 0.0 45.15 3.36 R
2724 3014 0.916086 ATAATCAGGCCCGTTGACCA 59.084 50.0 0.00 0.0 0.00 4.02 R
4623 4938 0.682209 GTGCCATGGGATCAGCTTGT 60.682 55.0 15.13 0.0 0.00 3.16 R
4851 5167 2.769602 ATTTAGGAGCGGAGGGAGTA 57.230 50.0 0.00 0.0 0.00 2.59 R
6200 6575 0.482446 ATCCTTGCCTGTTTCCCACA 59.518 50.0 0.00 0.0 0.00 4.17 R
6312 6693 0.588252 ATCACGAGTGTTGTTGCTGC 59.412 50.0 2.97 0.0 0.00 5.25 R
7295 7737 5.238432 ACATCTGAAACTTATTGTGTTCGCA 59.762 36.0 0.00 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 103 7.092079 CACAGGATCATGCAAGAAATGTAAAA 58.908 34.615 7.40 0.00 0.00 1.52
231 240 0.752658 TCATCCGGTACCATCTGCAG 59.247 55.000 13.54 7.63 0.00 4.41
311 321 1.744320 AAAGGGGCGGAAGTTTGCAC 61.744 55.000 0.00 0.00 0.00 4.57
378 388 3.068873 TGTGAAATTACCAAACAGGGTGC 59.931 43.478 0.00 0.00 42.39 5.01
460 476 9.956720 AATTCCGCATAGAAATCTTCTTTAATG 57.043 29.630 0.00 0.00 41.14 1.90
577 594 5.219343 TCGTATCTCTATCTACCCGACAA 57.781 43.478 0.00 0.00 0.00 3.18
599 616 1.753073 GGCTCAGGAAAATCCACATGG 59.247 52.381 0.00 0.00 39.61 3.66
640 657 0.038166 AGAAGGAGCGCCAATGGAAA 59.962 50.000 9.88 0.00 36.29 3.13
656 673 2.087646 GGAAAGAGGGAAGATGCACAC 58.912 52.381 0.00 0.00 0.00 3.82
918 944 4.958581 CCTTCCTGAGCTTTTATCCCAATT 59.041 41.667 0.00 0.00 0.00 2.32
991 1039 3.795041 CCAGAGAGCCCAGCCCAG 61.795 72.222 0.00 0.00 0.00 4.45
992 1040 4.486503 CAGAGAGCCCAGCCCAGC 62.487 72.222 0.00 0.00 0.00 4.85
1121 1169 2.825205 CGATGATCACAGCCATGTACA 58.175 47.619 0.00 0.00 37.65 2.90
1523 1571 1.760192 TCCTTACTCGCCTACTGTCC 58.240 55.000 0.00 0.00 0.00 4.02
1530 1578 2.895404 ACTCGCCTACTGTCCTTGTTTA 59.105 45.455 0.00 0.00 0.00 2.01
1598 1649 2.663808 TGCATTGCAGAAATGTTCGTG 58.336 42.857 7.38 0.00 46.37 4.35
1614 1665 4.795795 TGTTCGTGTGTTTTTATGCTGTTG 59.204 37.500 0.00 0.00 0.00 3.33
1656 1707 0.251608 GGGCACAGTGGGGTGTTATT 60.252 55.000 1.84 0.00 40.89 1.40
1662 1873 3.831911 CACAGTGGGGTGTTATTGGATTT 59.168 43.478 0.00 0.00 34.09 2.17
1664 1875 3.195396 CAGTGGGGTGTTATTGGATTTGG 59.805 47.826 0.00 0.00 0.00 3.28
1665 1876 2.499693 GTGGGGTGTTATTGGATTTGGG 59.500 50.000 0.00 0.00 0.00 4.12
1666 1877 2.112691 TGGGGTGTTATTGGATTTGGGT 59.887 45.455 0.00 0.00 0.00 4.51
1673 1884 6.402222 GTGTTATTGGATTTGGGTATTTGCA 58.598 36.000 0.00 0.00 0.00 4.08
1679 1890 3.684305 GGATTTGGGTATTTGCAACAAGC 59.316 43.478 0.00 0.00 45.96 4.01
1736 1947 9.136323 TGAAAGCAGATTCTAGATGATACTACA 57.864 33.333 0.00 0.00 0.00 2.74
1844 2098 8.671028 GTCAATGTTTAATAGGAACCGTTACAT 58.329 33.333 0.00 0.00 0.00 2.29
1863 2117 8.552034 CGTTACATTTTCTTGTCTTCTTCTTCT 58.448 33.333 0.00 0.00 0.00 2.85
1867 2121 9.129532 ACATTTTCTTGTCTTCTTCTTCTTCAT 57.870 29.630 0.00 0.00 0.00 2.57
1905 2159 3.931907 CCATTGGGGTCATCTCAGTTA 57.068 47.619 0.00 0.00 0.00 2.24
1911 2165 3.655777 TGGGGTCATCTCAGTTAACCTTT 59.344 43.478 0.88 0.00 0.00 3.11
1954 2237 5.838521 AGTTGGGGTCACTAAAACATGAAAT 59.161 36.000 0.00 0.00 0.00 2.17
1998 2285 7.985634 ATGTCTGTGTCATGTAAACAAAAAC 57.014 32.000 0.00 0.00 0.00 2.43
2007 2295 7.148672 TGTCATGTAAACAAAAACAGCTGTTTG 60.149 33.333 38.08 30.46 46.47 2.93
2036 2324 4.274950 TCGATTTGTGGTCTTTGGAGAAAC 59.725 41.667 0.00 0.00 32.66 2.78
2049 2337 4.513406 TGGAGAAACTTTACCCAACACT 57.487 40.909 0.00 0.00 0.00 3.55
2084 2372 3.191888 AGATGGACAGTGTAGGGAAGT 57.808 47.619 0.00 0.00 0.00 3.01
2099 2387 1.066914 GAAGTCTGCTCGCTTGTCTG 58.933 55.000 0.00 0.00 0.00 3.51
2152 2440 7.912250 GGTGAGTGCATATTACTGAATTTCAAG 59.088 37.037 0.01 0.00 0.00 3.02
2157 2445 8.125448 GTGCATATTACTGAATTTCAAGTCTCC 58.875 37.037 0.01 0.00 0.00 3.71
2166 2454 3.577649 TTTCAAGTCTCCGCTAGTCTG 57.422 47.619 0.00 0.00 0.00 3.51
2229 2517 5.941788 AGTTAAATGGGACTCAGTTCTGTT 58.058 37.500 0.00 0.00 35.18 3.16
2273 2563 9.406828 CATGTAGTATTTACTTATCTTGCGCTA 57.593 33.333 9.73 0.00 37.73 4.26
2274 2564 9.976511 ATGTAGTATTTACTTATCTTGCGCTAA 57.023 29.630 9.73 0.00 37.73 3.09
2414 2704 6.888632 CCATTTCTTCCTTATATCTGGGGATG 59.111 42.308 0.00 0.00 33.71 3.51
2425 2715 0.523072 CTGGGGATGAACACTTTGCG 59.477 55.000 0.00 0.00 0.00 4.85
2482 2772 3.385111 ACATACTGCTAGCCTGTCCTAAC 59.615 47.826 13.29 0.00 0.00 2.34
2484 2774 2.257207 ACTGCTAGCCTGTCCTAACAA 58.743 47.619 13.29 0.00 34.24 2.83
2563 2853 0.117742 AAGGGGAGGGGTTTACTCGA 59.882 55.000 0.00 0.00 35.82 4.04
2667 2957 1.166531 GCAGAACCAAAGCACTCCGT 61.167 55.000 0.00 0.00 0.00 4.69
2703 2993 0.037447 ACCAAGAAGCCAGAGAAGCC 59.963 55.000 0.00 0.00 0.00 4.35
2711 3001 2.764269 AGCCAGAGAAGCCACCTATAA 58.236 47.619 0.00 0.00 0.00 0.98
2712 3002 2.436173 AGCCAGAGAAGCCACCTATAAC 59.564 50.000 0.00 0.00 0.00 1.89
2718 3008 3.454812 GAGAAGCCACCTATAACCTCCAA 59.545 47.826 0.00 0.00 0.00 3.53
2724 3014 4.385310 GCCACCTATAACCTCCAAATCTGT 60.385 45.833 0.00 0.00 0.00 3.41
2786 3076 2.419297 CCAGGTGATAGTCAACCTGCTC 60.419 54.545 14.95 0.00 40.80 4.26
2789 3079 3.957497 AGGTGATAGTCAACCTGCTCTAG 59.043 47.826 0.00 0.00 33.71 2.43
2836 3126 6.949352 ATGAGTTATCAGCAAAGTATTGGG 57.051 37.500 0.00 0.00 39.29 4.12
2839 3129 5.193679 AGTTATCAGCAAAGTATTGGGGAC 58.806 41.667 0.00 0.00 37.02 4.46
2853 3143 1.177401 GGGGACAGAAAATGCCTCAC 58.823 55.000 0.00 0.00 0.00 3.51
2950 3249 2.710096 AAATTCCGGTCGGTGATGAT 57.290 45.000 9.36 0.00 36.47 2.45
3041 3340 4.080356 CACCTAGAATCCCCAAATCTGTGA 60.080 45.833 0.00 0.00 0.00 3.58
3045 3344 4.530875 AGAATCCCCAAATCTGTGATCAC 58.469 43.478 19.27 19.27 0.00 3.06
3088 3387 4.375313 ACTCTTATCCTGAAGGGGTCAAT 58.625 43.478 0.00 0.00 35.22 2.57
3091 3390 4.656112 TCTTATCCTGAAGGGGTCAATCTC 59.344 45.833 0.00 0.00 35.22 2.75
3234 3533 2.621070 ACCAGGTGATAGTCAACCTGT 58.379 47.619 17.97 6.22 40.67 4.00
3327 3641 2.003301 GACGAAGAATGAGAAGCCACC 58.997 52.381 0.00 0.00 0.00 4.61
3328 3642 1.347707 ACGAAGAATGAGAAGCCACCA 59.652 47.619 0.00 0.00 0.00 4.17
3329 3643 2.026822 ACGAAGAATGAGAAGCCACCAT 60.027 45.455 0.00 0.00 0.00 3.55
3330 3644 2.611292 CGAAGAATGAGAAGCCACCATC 59.389 50.000 0.00 0.00 0.00 3.51
3331 3645 3.614092 GAAGAATGAGAAGCCACCATCA 58.386 45.455 0.00 0.00 0.00 3.07
3332 3646 3.947612 AGAATGAGAAGCCACCATCAT 57.052 42.857 0.00 0.00 33.91 2.45
3333 3647 3.818180 AGAATGAGAAGCCACCATCATC 58.182 45.455 0.00 0.00 31.31 2.92
3334 3648 3.458857 AGAATGAGAAGCCACCATCATCT 59.541 43.478 0.00 0.00 31.31 2.90
3335 3649 4.657504 AGAATGAGAAGCCACCATCATCTA 59.342 41.667 0.00 0.00 31.31 1.98
3336 3650 5.131642 AGAATGAGAAGCCACCATCATCTAA 59.868 40.000 0.00 0.00 31.31 2.10
3337 3651 4.142609 TGAGAAGCCACCATCATCTAAC 57.857 45.455 0.00 0.00 0.00 2.34
3338 3652 3.519107 TGAGAAGCCACCATCATCTAACA 59.481 43.478 0.00 0.00 0.00 2.41
3339 3653 4.164796 TGAGAAGCCACCATCATCTAACAT 59.835 41.667 0.00 0.00 0.00 2.71
3340 3654 5.366477 TGAGAAGCCACCATCATCTAACATA 59.634 40.000 0.00 0.00 0.00 2.29
3341 3655 5.615289 AGAAGCCACCATCATCTAACATAC 58.385 41.667 0.00 0.00 0.00 2.39
3367 3681 7.986320 CCATCTTCTCCATCAGATATATTGTCC 59.014 40.741 0.00 0.00 0.00 4.02
3413 3727 1.883678 TGATGCTCCATCTTCCCAGA 58.116 50.000 6.74 0.00 41.06 3.86
3424 3738 2.930950 TCTTCCCAGAGTGGTTTGTTG 58.069 47.619 0.00 0.00 35.17 3.33
3485 3799 1.746615 CCATCTGAACCACCTGCGG 60.747 63.158 0.00 0.00 0.00 5.69
3614 3928 1.285078 GTCCCAAGACCATTAAGCCCT 59.715 52.381 0.00 0.00 37.00 5.19
3724 4039 3.367703 GGCCATGAAGAATTGTTCCACAG 60.368 47.826 12.39 1.13 0.00 3.66
3733 4048 3.928727 ATTGTTCCACAGCTGACAATG 57.071 42.857 23.37 11.75 40.21 2.82
3784 4099 1.802960 CAGGCAGCACTAGTTTGTCAG 59.197 52.381 10.44 0.40 0.00 3.51
3826 4141 5.163311 TGTTCTGAAACAGATGTCAAGAGGA 60.163 40.000 2.30 0.00 40.39 3.71
3850 4165 8.772705 GGAATTTTGCAAATACAAAGAATCACA 58.227 29.630 13.65 0.00 40.43 3.58
4232 4547 7.967854 CGACATTGGCTTCAAATTTGATAAGTA 59.032 33.333 21.10 5.58 37.00 2.24
4303 4618 6.912951 TTCTCCCTCCGTTCCTAAATATAG 57.087 41.667 0.00 0.00 0.00 1.31
4431 4746 7.598759 TCTAACAAGACTTATACTCCATCCC 57.401 40.000 0.00 0.00 0.00 3.85
4432 4747 7.130099 TCTAACAAGACTTATACTCCATCCCA 58.870 38.462 0.00 0.00 0.00 4.37
4433 4748 6.636454 AACAAGACTTATACTCCATCCCAA 57.364 37.500 0.00 0.00 0.00 4.12
4434 4749 6.636454 ACAAGACTTATACTCCATCCCAAA 57.364 37.500 0.00 0.00 0.00 3.28
4435 4750 7.027874 ACAAGACTTATACTCCATCCCAAAA 57.972 36.000 0.00 0.00 0.00 2.44
4436 4751 7.643123 ACAAGACTTATACTCCATCCCAAAAT 58.357 34.615 0.00 0.00 0.00 1.82
4437 4752 8.778059 ACAAGACTTATACTCCATCCCAAAATA 58.222 33.333 0.00 0.00 0.00 1.40
4438 4753 9.627123 CAAGACTTATACTCCATCCCAAAATAA 57.373 33.333 0.00 0.00 0.00 1.40
4439 4754 9.853177 AAGACTTATACTCCATCCCAAAATAAG 57.147 33.333 0.00 0.00 33.64 1.73
4440 4755 9.004231 AGACTTATACTCCATCCCAAAATAAGT 57.996 33.333 4.90 4.90 39.88 2.24
4441 4756 8.980481 ACTTATACTCCATCCCAAAATAAGTG 57.020 34.615 0.00 0.00 37.31 3.16
4442 4757 8.778059 ACTTATACTCCATCCCAAAATAAGTGA 58.222 33.333 0.00 0.00 37.31 3.41
4443 4758 8.974060 TTATACTCCATCCCAAAATAAGTGAC 57.026 34.615 0.00 0.00 0.00 3.67
4444 4759 5.520748 ACTCCATCCCAAAATAAGTGACT 57.479 39.130 0.00 0.00 0.00 3.41
4445 4760 5.501156 ACTCCATCCCAAAATAAGTGACTC 58.499 41.667 0.00 0.00 0.00 3.36
4446 4761 5.014123 ACTCCATCCCAAAATAAGTGACTCA 59.986 40.000 0.00 0.00 0.00 3.41
4447 4762 5.886609 TCCATCCCAAAATAAGTGACTCAA 58.113 37.500 0.00 0.00 0.00 3.02
4448 4763 5.710099 TCCATCCCAAAATAAGTGACTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
4449 4764 5.711976 CCATCCCAAAATAAGTGACTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
4450 4765 6.209391 CCATCCCAAAATAAGTGACTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
4451 4766 7.255942 CCATCCCAAAATAAGTGACTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
4452 4767 7.038154 TCCCAAAATAAGTGACTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
4453 4768 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
4454 4769 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
4455 4770 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
4456 4771 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4459 4774 8.535690 AATAAGTGACTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
4460 4775 5.793030 AGTGACTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
4461 4776 6.163135 AGTGACTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
4462 4777 6.583562 AGTGACTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
4463 4778 7.723324 AGTGACTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
4464 4779 7.868415 AGTGACTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
4465 4780 7.652507 GTGACTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
4466 4781 8.853126 TGACTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
4483 4798 9.828039 AGCTTTAGTACAAAGTTAGTACAAACT 57.172 29.630 14.90 0.00 43.24 2.66
4487 4802 9.669353 TTAGTACAAAGTTAGTACAAACTCGAG 57.331 33.333 11.84 11.84 43.24 4.04
4488 4803 7.710896 AGTACAAAGTTAGTACAAACTCGAGT 58.289 34.615 13.58 13.58 43.24 4.18
4489 4804 7.859875 AGTACAAAGTTAGTACAAACTCGAGTC 59.140 37.037 20.33 5.76 43.24 3.36
4490 4805 6.567050 ACAAAGTTAGTACAAACTCGAGTCA 58.433 36.000 20.33 1.60 38.76 3.41
4491 4806 6.474751 ACAAAGTTAGTACAAACTCGAGTCAC 59.525 38.462 20.33 14.01 38.76 3.67
4492 4807 6.388435 AAGTTAGTACAAACTCGAGTCACT 57.612 37.500 20.33 19.79 38.76 3.41
4493 4808 6.388435 AGTTAGTACAAACTCGAGTCACTT 57.612 37.500 20.33 6.87 34.60 3.16
4494 4809 7.502120 AGTTAGTACAAACTCGAGTCACTTA 57.498 36.000 20.33 10.67 34.60 2.24
4495 4810 8.108551 AGTTAGTACAAACTCGAGTCACTTAT 57.891 34.615 20.33 1.04 34.60 1.73
4496 4811 8.574737 AGTTAGTACAAACTCGAGTCACTTATT 58.425 33.333 20.33 5.22 34.60 1.40
4497 4812 9.189723 GTTAGTACAAACTCGAGTCACTTATTT 57.810 33.333 20.33 4.41 37.15 1.40
4498 4813 9.754382 TTAGTACAAACTCGAGTCACTTATTTT 57.246 29.630 20.33 3.59 37.15 1.82
4499 4814 8.073355 AGTACAAACTCGAGTCACTTATTTTG 57.927 34.615 20.33 18.12 0.00 2.44
4500 4815 6.300354 ACAAACTCGAGTCACTTATTTTGG 57.700 37.500 20.33 0.00 0.00 3.28
4501 4816 5.238650 ACAAACTCGAGTCACTTATTTTGGG 59.761 40.000 20.33 0.00 0.00 4.12
4502 4817 4.884668 ACTCGAGTCACTTATTTTGGGA 57.115 40.909 13.58 0.00 0.00 4.37
4503 4818 4.566987 ACTCGAGTCACTTATTTTGGGAC 58.433 43.478 13.58 0.00 0.00 4.46
4504 4819 3.581755 TCGAGTCACTTATTTTGGGACG 58.418 45.455 0.00 0.00 33.84 4.79
4505 4820 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
4506 4821 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
4507 4822 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
4508 4823 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4509 4824 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
4510 4825 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4511 4826 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4512 4827 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4604 4919 3.335579 AGCTTGATGTCCGGAAAACTAC 58.664 45.455 5.23 0.00 0.00 2.73
4623 4938 1.861542 CGGGGTCGCATTTTTGCTCA 61.862 55.000 0.00 0.00 0.00 4.26
4646 4961 1.389609 GCTGATCCCATGGCACCTTG 61.390 60.000 6.09 0.00 0.00 3.61
4712 5028 0.798776 CACCCAGAAACATGACGAGC 59.201 55.000 0.00 0.00 0.00 5.03
4851 5167 8.663209 ATGCTAGTCTGAATATCCTGATTACT 57.337 34.615 0.00 0.00 0.00 2.24
4852 5168 9.760926 ATGCTAGTCTGAATATCCTGATTACTA 57.239 33.333 0.00 0.00 0.00 1.82
4853 5169 9.015367 TGCTAGTCTGAATATCCTGATTACTAC 57.985 37.037 0.00 0.00 0.00 2.73
4854 5170 9.238368 GCTAGTCTGAATATCCTGATTACTACT 57.762 37.037 0.00 0.00 0.00 2.57
4856 5172 8.644374 AGTCTGAATATCCTGATTACTACTCC 57.356 38.462 0.00 0.00 0.00 3.85
4857 5173 7.672239 AGTCTGAATATCCTGATTACTACTCCC 59.328 40.741 0.00 0.00 0.00 4.30
4858 5174 7.672239 GTCTGAATATCCTGATTACTACTCCCT 59.328 40.741 0.00 0.00 0.00 4.20
4859 5175 7.891183 TCTGAATATCCTGATTACTACTCCCTC 59.109 40.741 0.00 0.00 0.00 4.30
4860 5176 6.954684 TGAATATCCTGATTACTACTCCCTCC 59.045 42.308 0.00 0.00 0.00 4.30
4861 5177 3.225177 TCCTGATTACTACTCCCTCCG 57.775 52.381 0.00 0.00 0.00 4.63
4862 5178 1.614413 CCTGATTACTACTCCCTCCGC 59.386 57.143 0.00 0.00 0.00 5.54
4863 5179 2.588620 CTGATTACTACTCCCTCCGCT 58.411 52.381 0.00 0.00 0.00 5.52
4864 5180 2.554893 CTGATTACTACTCCCTCCGCTC 59.445 54.545 0.00 0.00 0.00 5.03
4865 5181 1.887854 GATTACTACTCCCTCCGCTCC 59.112 57.143 0.00 0.00 0.00 4.70
4866 5182 0.924823 TTACTACTCCCTCCGCTCCT 59.075 55.000 0.00 0.00 0.00 3.69
4867 5183 1.811778 TACTACTCCCTCCGCTCCTA 58.188 55.000 0.00 0.00 0.00 2.94
4868 5184 0.924823 ACTACTCCCTCCGCTCCTAA 59.075 55.000 0.00 0.00 0.00 2.69
4869 5185 1.287146 ACTACTCCCTCCGCTCCTAAA 59.713 52.381 0.00 0.00 0.00 1.85
4870 5186 2.091222 ACTACTCCCTCCGCTCCTAAAT 60.091 50.000 0.00 0.00 0.00 1.40
4871 5187 2.769602 ACTCCCTCCGCTCCTAAATA 57.230 50.000 0.00 0.00 0.00 1.40
4872 5188 3.261818 ACTCCCTCCGCTCCTAAATAT 57.738 47.619 0.00 0.00 0.00 1.28
4873 5189 3.588569 ACTCCCTCCGCTCCTAAATATT 58.411 45.455 0.00 0.00 0.00 1.28
4874 5190 3.974642 ACTCCCTCCGCTCCTAAATATTT 59.025 43.478 5.89 5.89 0.00 1.40
4875 5191 4.202367 ACTCCCTCCGCTCCTAAATATTTG 60.202 45.833 11.05 1.40 0.00 2.32
4876 5192 3.714798 TCCCTCCGCTCCTAAATATTTGT 59.285 43.478 11.05 0.00 0.00 2.83
4877 5193 4.065789 CCCTCCGCTCCTAAATATTTGTC 58.934 47.826 11.05 0.00 0.00 3.18
4878 5194 4.202367 CCCTCCGCTCCTAAATATTTGTCT 60.202 45.833 11.05 0.00 0.00 3.41
4879 5195 5.368989 CCTCCGCTCCTAAATATTTGTCTT 58.631 41.667 11.05 0.00 0.00 3.01
4880 5196 5.823045 CCTCCGCTCCTAAATATTTGTCTTT 59.177 40.000 11.05 0.00 0.00 2.52
4881 5197 6.017852 CCTCCGCTCCTAAATATTTGTCTTTC 60.018 42.308 11.05 0.00 0.00 2.62
4882 5198 6.650120 TCCGCTCCTAAATATTTGTCTTTCT 58.350 36.000 11.05 0.00 0.00 2.52
4883 5199 7.788026 TCCGCTCCTAAATATTTGTCTTTCTA 58.212 34.615 11.05 0.00 0.00 2.10
4884 5200 7.926555 TCCGCTCCTAAATATTTGTCTTTCTAG 59.073 37.037 11.05 0.00 0.00 2.43
4885 5201 7.926555 CCGCTCCTAAATATTTGTCTTTCTAGA 59.073 37.037 11.05 0.00 0.00 2.43
4886 5202 8.973378 CGCTCCTAAATATTTGTCTTTCTAGAG 58.027 37.037 11.05 4.94 0.00 2.43
4898 5214 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
4899 5215 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
4900 5216 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
4901 5217 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
4902 5218 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
4903 5219 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
4934 5250 7.355101 TGGATGTATATAGACATACTCCCTCC 58.645 42.308 20.62 13.59 40.77 4.30
4935 5251 6.487331 GGATGTATATAGACATACTCCCTCCG 59.513 46.154 14.35 0.00 40.18 4.63
4936 5252 6.384342 TGTATATAGACATACTCCCTCCGT 57.616 41.667 0.00 0.00 33.37 4.69
4937 5253 6.413052 TGTATATAGACATACTCCCTCCGTC 58.587 44.000 0.00 0.00 33.37 4.79
4938 5254 2.653234 TAGACATACTCCCTCCGTCC 57.347 55.000 0.00 0.00 0.00 4.79
4939 5255 0.106116 AGACATACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
4940 5256 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
4941 5257 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
4942 5258 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
4943 5259 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
4944 5260 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4945 5261 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4946 5262 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4947 5263 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4948 5264 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4949 5265 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4950 5266 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4951 5267 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4952 5268 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4953 5269 3.146066 TCCGTCCCAAAATTCTTGTCTG 58.854 45.455 0.00 0.00 0.00 3.51
4954 5270 3.146066 CCGTCCCAAAATTCTTGTCTGA 58.854 45.455 0.00 0.00 0.00 3.27
4955 5271 3.189287 CCGTCCCAAAATTCTTGTCTGAG 59.811 47.826 0.00 0.00 0.00 3.35
4956 5272 4.065088 CGTCCCAAAATTCTTGTCTGAGA 58.935 43.478 0.00 0.00 0.00 3.27
4957 5273 4.697352 CGTCCCAAAATTCTTGTCTGAGAT 59.303 41.667 0.00 0.00 0.00 2.75
4958 5274 5.182001 CGTCCCAAAATTCTTGTCTGAGATT 59.818 40.000 0.00 0.00 0.00 2.40
4959 5275 6.294176 CGTCCCAAAATTCTTGTCTGAGATTT 60.294 38.462 0.00 0.00 0.00 2.17
4960 5276 6.865205 GTCCCAAAATTCTTGTCTGAGATTTG 59.135 38.462 0.00 0.00 0.00 2.32
4961 5277 6.550854 TCCCAAAATTCTTGTCTGAGATTTGT 59.449 34.615 0.00 0.00 0.00 2.83
4962 5278 6.865205 CCCAAAATTCTTGTCTGAGATTTGTC 59.135 38.462 0.00 0.00 0.00 3.18
4963 5279 7.255730 CCCAAAATTCTTGTCTGAGATTTGTCT 60.256 37.037 0.00 0.00 0.00 3.41
4964 5280 8.786898 CCAAAATTCTTGTCTGAGATTTGTCTA 58.213 33.333 0.00 0.00 0.00 2.59
4970 5286 8.689251 TCTTGTCTGAGATTTGTCTAAATACG 57.311 34.615 0.00 0.00 36.66 3.06
4971 5287 7.759886 TCTTGTCTGAGATTTGTCTAAATACGG 59.240 37.037 0.00 0.00 36.66 4.02
4972 5288 7.165460 TGTCTGAGATTTGTCTAAATACGGA 57.835 36.000 0.00 0.00 36.66 4.69
4973 5289 7.782049 TGTCTGAGATTTGTCTAAATACGGAT 58.218 34.615 0.00 0.00 36.66 4.18
4974 5290 7.706607 TGTCTGAGATTTGTCTAAATACGGATG 59.293 37.037 0.00 0.00 36.66 3.51
4975 5291 7.707035 GTCTGAGATTTGTCTAAATACGGATGT 59.293 37.037 0.00 0.00 36.66 3.06
4976 5292 8.909923 TCTGAGATTTGTCTAAATACGGATGTA 58.090 33.333 0.00 0.00 36.66 2.29
4977 5293 9.698309 CTGAGATTTGTCTAAATACGGATGTAT 57.302 33.333 0.00 0.00 43.14 2.29
4978 5294 9.692749 TGAGATTTGTCTAAATACGGATGTATC 57.307 33.333 0.00 0.00 40.42 2.24
4979 5295 9.692749 GAGATTTGTCTAAATACGGATGTATCA 57.307 33.333 0.00 0.00 40.42 2.15
4982 5298 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
4983 5299 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
4984 5300 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
4985 5301 8.638873 TGTCTAAATACGGATGTATCAAGTCAT 58.361 33.333 0.00 0.00 40.42 3.06
4986 5302 8.916654 GTCTAAATACGGATGTATCAAGTCATG 58.083 37.037 0.00 0.00 40.42 3.07
4987 5303 8.638873 TCTAAATACGGATGTATCAAGTCATGT 58.361 33.333 0.00 0.00 40.42 3.21
4988 5304 9.261180 CTAAATACGGATGTATCAAGTCATGTT 57.739 33.333 0.00 0.00 40.42 2.71
4989 5305 8.506168 AAATACGGATGTATCAAGTCATGTTT 57.494 30.769 0.00 0.00 40.42 2.83
4990 5306 8.506168 AATACGGATGTATCAAGTCATGTTTT 57.494 30.769 0.00 0.00 40.42 2.43
4991 5307 9.607988 AATACGGATGTATCAAGTCATGTTTTA 57.392 29.630 0.00 0.00 40.42 1.52
4992 5308 7.539712 ACGGATGTATCAAGTCATGTTTTAG 57.460 36.000 0.00 0.00 0.00 1.85
4993 5309 7.103641 ACGGATGTATCAAGTCATGTTTTAGT 58.896 34.615 0.00 0.00 0.00 2.24
4994 5310 8.255206 ACGGATGTATCAAGTCATGTTTTAGTA 58.745 33.333 0.00 0.00 0.00 1.82
4995 5311 9.261180 CGGATGTATCAAGTCATGTTTTAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
5026 5342 7.887381 ACATCCGTATCTAGACAAATCTAAGG 58.113 38.462 0.00 0.00 36.98 2.69
5027 5343 6.328641 TCCGTATCTAGACAAATCTAAGGC 57.671 41.667 0.00 0.00 36.98 4.35
5028 5344 5.831525 TCCGTATCTAGACAAATCTAAGGCA 59.168 40.000 0.00 0.00 36.98 4.75
5029 5345 6.322969 TCCGTATCTAGACAAATCTAAGGCAA 59.677 38.462 0.00 0.00 36.98 4.52
5030 5346 6.642950 CCGTATCTAGACAAATCTAAGGCAAG 59.357 42.308 0.00 0.00 36.98 4.01
5031 5347 7.426410 CGTATCTAGACAAATCTAAGGCAAGA 58.574 38.462 0.00 0.00 36.98 3.02
5032 5348 7.921214 CGTATCTAGACAAATCTAAGGCAAGAA 59.079 37.037 0.00 0.00 36.98 2.52
5033 5349 9.771534 GTATCTAGACAAATCTAAGGCAAGAAT 57.228 33.333 0.00 0.00 36.98 2.40
5035 5351 9.692325 ATCTAGACAAATCTAAGGCAAGAATTT 57.308 29.630 0.00 0.00 36.98 1.82
5036 5352 9.520515 TCTAGACAAATCTAAGGCAAGAATTTT 57.479 29.630 0.00 0.00 36.98 1.82
5037 5353 9.565213 CTAGACAAATCTAAGGCAAGAATTTTG 57.435 33.333 11.38 11.38 36.98 2.44
5038 5354 7.381323 AGACAAATCTAAGGCAAGAATTTTGG 58.619 34.615 14.87 0.57 33.04 3.28
5039 5355 6.466812 ACAAATCTAAGGCAAGAATTTTGGG 58.533 36.000 14.87 0.00 33.04 4.12
5040 5356 6.269769 ACAAATCTAAGGCAAGAATTTTGGGA 59.730 34.615 14.87 0.00 33.04 4.37
5041 5357 7.038088 ACAAATCTAAGGCAAGAATTTTGGGAT 60.038 33.333 14.87 0.00 33.04 3.85
5042 5358 5.920193 TCTAAGGCAAGAATTTTGGGATG 57.080 39.130 0.00 0.00 0.00 3.51
5043 5359 3.986996 AAGGCAAGAATTTTGGGATGG 57.013 42.857 0.00 0.00 0.00 3.51
5044 5360 3.188880 AGGCAAGAATTTTGGGATGGA 57.811 42.857 0.00 0.00 0.00 3.41
5045 5361 3.102204 AGGCAAGAATTTTGGGATGGAG 58.898 45.455 0.00 0.00 0.00 3.86
5046 5362 2.169144 GGCAAGAATTTTGGGATGGAGG 59.831 50.000 0.00 0.00 0.00 4.30
5047 5363 2.169144 GCAAGAATTTTGGGATGGAGGG 59.831 50.000 3.60 0.00 0.00 4.30
5048 5364 3.711863 CAAGAATTTTGGGATGGAGGGA 58.288 45.455 0.00 0.00 0.00 4.20
5049 5365 3.677156 AGAATTTTGGGATGGAGGGAG 57.323 47.619 0.00 0.00 0.00 4.30
5050 5366 2.929043 AGAATTTTGGGATGGAGGGAGT 59.071 45.455 0.00 0.00 0.00 3.85
5051 5367 4.119155 AGAATTTTGGGATGGAGGGAGTA 58.881 43.478 0.00 0.00 0.00 2.59
5052 5368 4.733988 AGAATTTTGGGATGGAGGGAGTAT 59.266 41.667 0.00 0.00 0.00 2.12
5053 5369 5.196574 AGAATTTTGGGATGGAGGGAGTATT 59.803 40.000 0.00 0.00 0.00 1.89
5054 5370 4.965283 TTTTGGGATGGAGGGAGTATTT 57.035 40.909 0.00 0.00 0.00 1.40
5055 5371 4.965283 TTTGGGATGGAGGGAGTATTTT 57.035 40.909 0.00 0.00 0.00 1.82
5056 5372 6.410222 TTTTGGGATGGAGGGAGTATTTTA 57.590 37.500 0.00 0.00 0.00 1.52
5057 5373 5.646692 TTGGGATGGAGGGAGTATTTTAG 57.353 43.478 0.00 0.00 0.00 1.85
5058 5374 4.903149 TGGGATGGAGGGAGTATTTTAGA 58.097 43.478 0.00 0.00 0.00 2.10
5059 5375 4.907875 TGGGATGGAGGGAGTATTTTAGAG 59.092 45.833 0.00 0.00 0.00 2.43
5060 5376 4.908481 GGGATGGAGGGAGTATTTTAGAGT 59.092 45.833 0.00 0.00 0.00 3.24
5061 5377 5.221742 GGGATGGAGGGAGTATTTTAGAGTG 60.222 48.000 0.00 0.00 0.00 3.51
5062 5378 5.367060 GGATGGAGGGAGTATTTTAGAGTGT 59.633 44.000 0.00 0.00 0.00 3.55
5063 5379 6.553852 GGATGGAGGGAGTATTTTAGAGTGTA 59.446 42.308 0.00 0.00 0.00 2.90
5064 5380 7.256012 GGATGGAGGGAGTATTTTAGAGTGTAG 60.256 44.444 0.00 0.00 0.00 2.74
5065 5381 6.738635 TGGAGGGAGTATTTTAGAGTGTAGA 58.261 40.000 0.00 0.00 0.00 2.59
5066 5382 7.363031 TGGAGGGAGTATTTTAGAGTGTAGAT 58.637 38.462 0.00 0.00 0.00 1.98
5067 5383 7.844779 TGGAGGGAGTATTTTAGAGTGTAGATT 59.155 37.037 0.00 0.00 0.00 2.40
5068 5384 8.361889 GGAGGGAGTATTTTAGAGTGTAGATTC 58.638 40.741 0.00 0.00 0.00 2.52
5069 5385 8.840200 AGGGAGTATTTTAGAGTGTAGATTCA 57.160 34.615 0.00 0.00 0.00 2.57
5070 5386 8.697292 AGGGAGTATTTTAGAGTGTAGATTCAC 58.303 37.037 0.00 0.00 38.46 3.18
5081 5397 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5082 5398 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5083 5399 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
5084 5400 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5085 5401 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5086 5402 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5087 5403 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5088 5404 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5089 5405 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5090 5406 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5091 5407 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5092 5408 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
5093 5409 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5094 5410 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5095 5411 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5096 5412 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5097 5413 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5098 5414 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5099 5415 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5100 5416 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5101 5417 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5102 5418 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5103 5419 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5104 5420 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5105 5421 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5106 5422 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5107 5423 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5108 5424 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5109 5425 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5110 5426 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5111 5427 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5112 5428 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5113 5429 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5114 5430 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5115 5431 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5116 5432 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5117 5433 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5118 5434 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5119 5435 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5132 5448 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5133 5449 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5134 5450 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5135 5451 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5136 5452 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5137 5453 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5138 5454 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5353 5677 3.857052 TGCTGGGTCGTGTAGATAAAAG 58.143 45.455 0.00 0.00 0.00 2.27
5526 5859 7.726216 TGTGAAACATATATAGTCCAGTCCAG 58.274 38.462 0.00 0.00 45.67 3.86
5529 5864 6.576662 AACATATATAGTCCAGTCCAGACG 57.423 41.667 0.00 0.00 39.31 4.18
5553 5888 8.551205 ACGTATTATATTCATCAAGTTGCAGTG 58.449 33.333 0.00 0.00 0.00 3.66
5635 5970 7.279615 TGTAATGTGAAATAATCGATGGACCT 58.720 34.615 0.00 0.00 0.00 3.85
5939 6314 3.944871 GCAAGGGCAATGAATACCG 57.055 52.632 0.00 0.00 40.72 4.02
6025 6400 3.551846 CCAGAAACTGGTAAAGTGGTGT 58.448 45.455 9.36 0.00 45.82 4.16
6200 6575 2.030457 CGCTCGTCGAAATTATTGCCTT 59.970 45.455 0.00 0.00 41.67 4.35
6234 6615 2.180204 GGATGATGGTTCACCGCCG 61.180 63.158 0.00 0.00 39.43 6.46
6249 6630 0.179163 CGCCGAGAAATTTCAAGGCC 60.179 55.000 32.56 22.19 44.00 5.19
6310 6691 2.684843 CCTTCGACCAAGCAGCAGC 61.685 63.158 0.00 0.00 42.56 5.25
6471 6880 5.249163 TGGTATGCACTAGATGATGGCTAAT 59.751 40.000 0.00 0.00 0.00 1.73
6481 6890 9.862371 ACTAGATGATGGCTAATCGTATAAAAG 57.138 33.333 0.00 0.00 38.22 2.27
6487 6896 7.549134 TGATGGCTAATCGTATAAAAGCATAGG 59.451 37.037 0.00 0.00 38.22 2.57
6504 6913 6.752168 AGCATAGGATATTTTCATGGCAAAC 58.248 36.000 0.00 0.00 0.00 2.93
6508 6917 5.271598 AGGATATTTTCATGGCAAACCTCA 58.728 37.500 0.00 0.00 36.63 3.86
6574 6983 0.455633 CAGACCAATTGCGCTGCTTC 60.456 55.000 9.73 0.00 0.00 3.86
6576 6985 1.865788 GACCAATTGCGCTGCTTCCA 61.866 55.000 9.73 0.00 0.00 3.53
6584 6993 2.002127 CGCTGCTTCCAATCGTCTC 58.998 57.895 0.00 0.00 0.00 3.36
6597 7006 1.328279 TCGTCTCTGCTTCTTCACCA 58.672 50.000 0.00 0.00 0.00 4.17
6598 7007 1.270826 TCGTCTCTGCTTCTTCACCAG 59.729 52.381 0.00 0.00 0.00 4.00
6599 7008 1.437625 GTCTCTGCTTCTTCACCAGC 58.562 55.000 0.00 0.00 36.49 4.85
6602 7011 1.130054 TCTGCTTCTTCACCAGCCCT 61.130 55.000 0.00 0.00 34.91 5.19
6626 7043 1.610624 GGGACTCTTCCGCATCAACAA 60.611 52.381 0.00 0.00 43.94 2.83
6750 7169 2.384828 TCTTCCTCGCAACTAGGCATA 58.615 47.619 0.00 0.00 33.84 3.14
6763 7182 1.663695 AGGCATACACGCATGTTACC 58.336 50.000 0.00 0.00 40.48 2.85
6768 7187 4.932799 GGCATACACGCATGTTACCATATA 59.067 41.667 0.00 0.00 40.48 0.86
6834 7253 1.843851 TCCCTAATCCAGGCGTTGAAT 59.156 47.619 0.00 0.00 43.98 2.57
6910 7329 2.595386 CCTAAGTTTCAAACGGCATGC 58.405 47.619 9.90 9.90 36.23 4.06
6924 7343 1.824230 GGCATGCCAAGGTATGAACAA 59.176 47.619 32.08 0.00 39.96 2.83
6975 7394 5.582665 GCAGGTTTACAGAGACAATAAGAGG 59.417 44.000 0.00 0.00 0.00 3.69
6981 7400 5.808366 ACAGAGACAATAAGAGGAACACA 57.192 39.130 0.00 0.00 0.00 3.72
7000 7419 1.078918 CACCTTGGCGATCTCTGCA 60.079 57.895 0.00 0.00 0.00 4.41
7228 7669 0.323725 GGCTCAGCTTTGAATCCCCA 60.324 55.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.246307 CAAGAACTAAAGGACTTAGGTGGG 58.754 45.833 0.00 0.00 37.69 4.61
1 2 5.246307 CCAAGAACTAAAGGACTTAGGTGG 58.754 45.833 0.00 0.00 37.69 4.61
2 3 4.695928 GCCAAGAACTAAAGGACTTAGGTG 59.304 45.833 0.00 0.00 37.69 4.00
3 4 4.349930 TGCCAAGAACTAAAGGACTTAGGT 59.650 41.667 0.00 0.00 40.45 3.08
4 5 4.906618 TGCCAAGAACTAAAGGACTTAGG 58.093 43.478 0.00 0.00 41.32 2.69
5 6 5.794894 TCTGCCAAGAACTAAAGGACTTAG 58.205 41.667 0.00 0.00 42.52 2.18
231 240 3.096489 TGAAATTTGCTTGTGTCTGCC 57.904 42.857 0.00 0.00 0.00 4.85
282 291 1.365999 CGCCCCTTTTTCCCAACAC 59.634 57.895 0.00 0.00 0.00 3.32
460 476 3.894759 ACATATAGCATGCCCATCATCC 58.105 45.455 15.66 0.00 31.79 3.51
468 484 6.968131 TTTCGAGAATACATATAGCATGCC 57.032 37.500 15.66 0.00 0.00 4.40
498 514 4.415881 TCCTGTGACCATTTATATGCGT 57.584 40.909 0.00 0.00 0.00 5.24
505 522 7.232330 TGAATGTTTCATTCCTGTGACCATTTA 59.768 33.333 16.44 0.00 33.51 1.40
577 594 2.978156 TGTGGATTTTCCTGAGCCTT 57.022 45.000 0.00 0.00 37.46 4.35
599 616 3.492421 TTCTTGATTCTTGAATGGCGC 57.508 42.857 0.00 0.00 0.00 6.53
640 657 1.599047 CCGTGTGCATCTTCCCTCT 59.401 57.895 0.00 0.00 0.00 3.69
656 673 1.896122 AAGGGTAACGAGAAGGGCCG 61.896 60.000 0.00 0.00 37.60 6.13
921 947 2.104530 GAACGAGGAGGTAGCGGC 59.895 66.667 0.00 0.00 0.00 6.53
1049 1097 4.537433 GAGGCGGTGGCTGGCTAG 62.537 72.222 2.00 0.00 45.75 3.42
1096 1144 1.815421 GGCTGTGATCATCGCCGTT 60.815 57.895 18.64 0.00 32.22 4.44
1244 1292 2.157738 CTTGACCTCCTTGCTTTCCTG 58.842 52.381 0.00 0.00 0.00 3.86
1469 1517 3.050275 GTGGAGGACGCAACTGGC 61.050 66.667 0.00 0.00 39.90 4.85
1523 1571 7.416154 TCGTGTGATAGAAAACCTAAACAAG 57.584 36.000 0.00 0.00 32.93 3.16
1530 1578 4.019681 TCCCATTCGTGTGATAGAAAACCT 60.020 41.667 0.00 0.00 0.00 3.50
1598 1649 2.724174 GCGACCAACAGCATAAAAACAC 59.276 45.455 0.00 0.00 0.00 3.32
1614 1665 1.068741 CTACATCCAACCTAGGCGACC 59.931 57.143 9.30 0.00 0.00 4.79
1656 1707 4.802248 GCTTGTTGCAAATACCCAAATCCA 60.802 41.667 0.00 0.00 42.31 3.41
1662 1873 1.000731 GCAGCTTGTTGCAAATACCCA 59.999 47.619 0.00 0.00 45.94 4.51
1673 1884 3.244146 TGCACCAATTAATGCAGCTTGTT 60.244 39.130 10.86 0.00 46.63 2.83
1923 2206 6.890814 TGTTTTAGTGACCCCAACTTTTCTAA 59.109 34.615 0.00 0.00 0.00 2.10
1954 2237 6.324512 AGACATATGAATTATTGCAAAGGCCA 59.675 34.615 10.38 0.00 40.13 5.36
1955 2238 6.643770 CAGACATATGAATTATTGCAAAGGCC 59.356 38.462 10.38 0.00 40.13 5.19
1956 2239 7.168637 CACAGACATATGAATTATTGCAAAGGC 59.831 37.037 10.38 0.00 41.68 4.35
1957 2240 8.192774 ACACAGACATATGAATTATTGCAAAGG 58.807 33.333 10.38 0.00 0.00 3.11
1960 2243 8.278729 TGACACAGACATATGAATTATTGCAA 57.721 30.769 10.38 0.00 0.00 4.08
2007 2295 4.527564 CAAAGACCACAAATCGACTGTTC 58.472 43.478 0.00 0.00 0.00 3.18
2015 2303 5.774498 AGTTTCTCCAAAGACCACAAATC 57.226 39.130 0.00 0.00 0.00 2.17
2049 2337 8.692710 CACTGTCCATCTACTTATTTACCAGTA 58.307 37.037 0.00 0.00 0.00 2.74
2084 2372 1.373873 CAGCAGACAAGCGAGCAGA 60.374 57.895 0.00 0.00 40.15 4.26
2099 2387 7.745620 AATAGCCTTATAACACCATAACAGC 57.254 36.000 0.00 0.00 0.00 4.40
2152 2440 0.394625 ACTCCCAGACTAGCGGAGAC 60.395 60.000 17.94 0.00 45.15 3.36
2157 2445 4.822896 ACTAGAAATACTCCCAGACTAGCG 59.177 45.833 0.00 0.00 32.06 4.26
2166 2454 7.412853 AGAGTTGAAGACTAGAAATACTCCC 57.587 40.000 0.00 0.00 39.19 4.30
2414 2704 4.722194 TGCAGAATATTCGCAAAGTGTTC 58.278 39.130 23.39 3.10 35.17 3.18
2425 2715 2.158449 CCGAAGGCGATGCAGAATATTC 59.842 50.000 7.41 7.41 46.14 1.75
2482 2772 1.134367 CACAGAATGCTGGGCTCATTG 59.866 52.381 5.47 0.00 46.60 2.82
2484 2774 3.186345 CACAGAATGCTGGGCTCAT 57.814 52.632 5.47 0.00 46.60 2.90
2563 2853 4.407296 TCAGGTGGCTGGTTAAAATGTTTT 59.593 37.500 0.00 0.00 0.00 2.43
2667 2957 7.545265 GCTTCTTGGTTTGCAATGATACATTTA 59.455 33.333 0.00 0.00 0.00 1.40
2703 2993 5.126067 CCACAGATTTGGAGGTTATAGGTG 58.874 45.833 0.00 0.00 39.24 4.00
2711 3001 2.810400 CGTTGACCACAGATTTGGAGGT 60.810 50.000 2.80 2.80 39.24 3.85
2712 3002 1.806542 CGTTGACCACAGATTTGGAGG 59.193 52.381 0.00 0.00 39.24 4.30
2718 3008 1.303317 GGCCCGTTGACCACAGATT 60.303 57.895 0.00 0.00 0.00 2.40
2724 3014 0.916086 ATAATCAGGCCCGTTGACCA 59.084 50.000 0.00 0.00 0.00 4.02
2808 3098 7.706281 ATACTTTGCTGATAACTCATTCTCG 57.294 36.000 0.00 0.00 0.00 4.04
2820 3110 3.266772 TCTGTCCCCAATACTTTGCTGAT 59.733 43.478 0.00 0.00 0.00 2.90
2836 3126 2.746362 CTCAGTGAGGCATTTTCTGTCC 59.254 50.000 12.67 0.00 0.00 4.02
2839 3129 3.672808 AGTCTCAGTGAGGCATTTTCTG 58.327 45.455 25.93 0.00 36.65 3.02
2853 3143 5.108517 GTGGCTTCTCATTCTTAGTCTCAG 58.891 45.833 0.00 0.00 0.00 3.35
2923 3213 1.401018 CCGACCGGAATTTTCTGTTGC 60.401 52.381 9.46 0.00 37.50 4.17
2927 3226 1.803334 TCACCGACCGGAATTTTCTG 58.197 50.000 16.07 1.12 38.96 3.02
2970 3269 3.329225 TGGTACATTCATGGAGTGGTTGA 59.671 43.478 0.00 0.00 0.00 3.18
3088 3387 7.873719 AAGTTCTGATAGAAGATCTTCGAGA 57.126 36.000 25.88 21.37 43.97 4.04
3327 3641 7.674120 TGGAGAAGATGGTATGTTAGATGATG 58.326 38.462 0.00 0.00 0.00 3.07
3328 3642 7.862274 TGGAGAAGATGGTATGTTAGATGAT 57.138 36.000 0.00 0.00 0.00 2.45
3329 3643 7.510343 TGATGGAGAAGATGGTATGTTAGATGA 59.490 37.037 0.00 0.00 0.00 2.92
3330 3644 7.674120 TGATGGAGAAGATGGTATGTTAGATG 58.326 38.462 0.00 0.00 0.00 2.90
3331 3645 7.732140 TCTGATGGAGAAGATGGTATGTTAGAT 59.268 37.037 0.00 0.00 0.00 1.98
3332 3646 7.069344 TCTGATGGAGAAGATGGTATGTTAGA 58.931 38.462 0.00 0.00 0.00 2.10
3333 3647 7.295322 TCTGATGGAGAAGATGGTATGTTAG 57.705 40.000 0.00 0.00 0.00 2.34
3334 3648 7.862274 ATCTGATGGAGAAGATGGTATGTTA 57.138 36.000 0.00 0.00 33.12 2.41
3335 3649 6.760440 ATCTGATGGAGAAGATGGTATGTT 57.240 37.500 0.00 0.00 33.12 2.71
3336 3650 9.726652 ATATATCTGATGGAGAAGATGGTATGT 57.273 33.333 0.00 0.00 34.91 2.29
3339 3653 9.552695 ACAATATATCTGATGGAGAAGATGGTA 57.447 33.333 0.00 0.00 34.91 3.25
3340 3654 8.446714 ACAATATATCTGATGGAGAAGATGGT 57.553 34.615 0.00 0.00 34.91 3.55
3341 3655 7.986320 GGACAATATATCTGATGGAGAAGATGG 59.014 40.741 0.00 0.00 34.91 3.51
3367 3681 3.572255 TCGGAATTTTCCTTTGTTCTGGG 59.428 43.478 7.69 0.00 45.33 4.45
3393 3707 2.172082 CTCTGGGAAGATGGAGCATCAA 59.828 50.000 0.00 0.00 42.72 2.57
3413 3727 3.709653 TGGTCTCTAGACAACAAACCACT 59.290 43.478 11.98 0.00 46.47 4.00
3424 3738 4.500127 GAGCTTTCCTTTGGTCTCTAGAC 58.500 47.826 1.30 1.30 44.04 2.59
3485 3799 4.940046 CACCATATCAGCTTCCATATGACC 59.060 45.833 3.65 0.00 35.70 4.02
3724 4039 3.435566 CATTCACATCAGCATTGTCAGC 58.564 45.455 0.00 0.00 0.00 4.26
3733 4048 2.408271 TCAGGACCATTCACATCAGC 57.592 50.000 0.00 0.00 0.00 4.26
3784 4099 5.749109 CAGAACAGTTATTAGACGGGTCATC 59.251 44.000 1.17 0.00 34.45 2.92
3823 4138 8.992073 GTGATTCTTTGTATTTGCAAAATTCCT 58.008 29.630 17.19 1.30 37.82 3.36
4204 4519 1.981254 AATTTGAAGCCAATGTCGCG 58.019 45.000 0.00 0.00 31.46 5.87
4232 4547 6.636705 TGTGATAGGTCGTAATTTGCTACTT 58.363 36.000 0.00 0.00 0.00 2.24
4339 4654 5.886960 AGTGTAGATTCACTCATTTTGCC 57.113 39.130 0.00 0.00 44.07 4.52
4412 4727 9.627123 TTATTTTGGGATGGAGTATAAGTCTTG 57.373 33.333 0.00 0.00 0.00 3.02
4421 4736 6.214615 TGAGTCACTTATTTTGGGATGGAGTA 59.785 38.462 0.00 0.00 0.00 2.59
4422 4737 5.014123 TGAGTCACTTATTTTGGGATGGAGT 59.986 40.000 0.00 0.00 0.00 3.85
4423 4738 5.500234 TGAGTCACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
4424 4739 5.512942 TGAGTCACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
4425 4740 5.711976 AGTTGAGTCACTTATTTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
4426 4741 6.824305 AGTTGAGTCACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
4427 4742 7.287696 ACAAAGTTGAGTCACTTATTTTGGGAT 59.712 33.333 12.94 0.00 35.87 3.85
4428 4743 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
4429 4744 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
4430 4745 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
4433 4748 8.989980 GCTAGTACAAAGTTGAGTCACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
4434 4749 8.368668 AGCTAGTACAAAGTTGAGTCACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
4435 4750 7.897864 AGCTAGTACAAAGTTGAGTCACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
4436 4751 7.286215 AGCTAGTACAAAGTTGAGTCACTTA 57.714 36.000 0.00 0.00 35.87 2.24
4437 4752 6.163135 AGCTAGTACAAAGTTGAGTCACTT 57.837 37.500 0.00 0.00 38.74 3.16
4438 4753 5.793030 AGCTAGTACAAAGTTGAGTCACT 57.207 39.130 0.00 0.00 0.00 3.41
4439 4754 6.846325 AAAGCTAGTACAAAGTTGAGTCAC 57.154 37.500 0.00 0.00 0.00 3.67
4440 4755 7.723324 ACTAAAGCTAGTACAAAGTTGAGTCA 58.277 34.615 0.00 0.00 36.56 3.41
4457 4772 9.828039 AGTTTGTACTAACTTTGTACTAAAGCT 57.172 29.630 15.68 7.77 40.44 3.74
4461 4776 9.669353 CTCGAGTTTGTACTAACTTTGTACTAA 57.331 33.333 21.05 9.51 38.43 2.24
4462 4777 8.840321 ACTCGAGTTTGTACTAACTTTGTACTA 58.160 33.333 21.05 4.86 38.43 1.82
4463 4778 7.710896 ACTCGAGTTTGTACTAACTTTGTACT 58.289 34.615 21.05 0.22 38.43 2.73
4464 4779 7.645340 TGACTCGAGTTTGTACTAACTTTGTAC 59.355 37.037 21.08 13.97 38.43 2.90
4465 4780 7.645340 GTGACTCGAGTTTGTACTAACTTTGTA 59.355 37.037 21.08 8.61 38.43 2.41
4466 4781 6.474751 GTGACTCGAGTTTGTACTAACTTTGT 59.525 38.462 21.08 18.42 38.43 2.83
4467 4782 6.696148 AGTGACTCGAGTTTGTACTAACTTTG 59.304 38.462 21.08 16.75 38.43 2.77
4468 4783 6.803642 AGTGACTCGAGTTTGTACTAACTTT 58.196 36.000 21.08 8.61 38.43 2.66
4469 4784 6.388435 AGTGACTCGAGTTTGTACTAACTT 57.612 37.500 21.08 7.79 38.43 2.66
4470 4785 6.388435 AAGTGACTCGAGTTTGTACTAACT 57.612 37.500 21.08 20.40 40.92 2.24
4471 4786 8.739649 AATAAGTGACTCGAGTTTGTACTAAC 57.260 34.615 21.08 11.62 33.84 2.34
4472 4787 9.754382 AAAATAAGTGACTCGAGTTTGTACTAA 57.246 29.630 21.08 1.57 33.84 2.24
4473 4788 9.188588 CAAAATAAGTGACTCGAGTTTGTACTA 57.811 33.333 21.08 7.42 33.84 1.82
4474 4789 7.170998 CCAAAATAAGTGACTCGAGTTTGTACT 59.829 37.037 21.08 17.56 37.31 2.73
4475 4790 7.288672 CCAAAATAAGTGACTCGAGTTTGTAC 58.711 38.462 21.08 15.71 0.00 2.90
4476 4791 6.425721 CCCAAAATAAGTGACTCGAGTTTGTA 59.574 38.462 21.08 10.21 0.00 2.41
4477 4792 5.238650 CCCAAAATAAGTGACTCGAGTTTGT 59.761 40.000 21.08 5.70 0.00 2.83
4478 4793 5.468746 TCCCAAAATAAGTGACTCGAGTTTG 59.531 40.000 21.08 16.23 0.00 2.93
4479 4794 5.469084 GTCCCAAAATAAGTGACTCGAGTTT 59.531 40.000 21.08 12.75 0.00 2.66
4480 4795 4.995487 GTCCCAAAATAAGTGACTCGAGTT 59.005 41.667 21.08 6.08 0.00 3.01
4481 4796 4.566987 GTCCCAAAATAAGTGACTCGAGT 58.433 43.478 20.18 20.18 0.00 4.18
4482 4797 3.612860 CGTCCCAAAATAAGTGACTCGAG 59.387 47.826 11.84 11.84 0.00 4.04
4483 4798 3.581755 CGTCCCAAAATAAGTGACTCGA 58.418 45.455 0.00 0.00 0.00 4.04
4484 4799 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
4485 4800 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
4486 4801 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
4487 4802 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
4488 4803 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
4489 4804 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4490 4805 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4491 4806 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4492 4807 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4493 4808 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4494 4809 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4495 4810 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4496 4811 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
4497 4812 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
4498 4813 2.674420 CTAAATACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
4499 4814 1.969208 CCTAAATACTCCCTCCGTCCC 59.031 57.143 0.00 0.00 0.00 4.46
4500 4815 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
4501 4816 3.703052 TGTTCCTAAATACTCCCTCCGTC 59.297 47.826 0.00 0.00 0.00 4.79
4502 4817 3.705072 CTGTTCCTAAATACTCCCTCCGT 59.295 47.826 0.00 0.00 0.00 4.69
4503 4818 3.958798 TCTGTTCCTAAATACTCCCTCCG 59.041 47.826 0.00 0.00 0.00 4.63
4504 4819 4.345547 CCTCTGTTCCTAAATACTCCCTCC 59.654 50.000 0.00 0.00 0.00 4.30
4505 4820 4.345547 CCCTCTGTTCCTAAATACTCCCTC 59.654 50.000 0.00 0.00 0.00 4.30
4506 4821 4.015541 TCCCTCTGTTCCTAAATACTCCCT 60.016 45.833 0.00 0.00 0.00 4.20
4507 4822 4.296056 TCCCTCTGTTCCTAAATACTCCC 58.704 47.826 0.00 0.00 0.00 4.30
4508 4823 4.963628 ACTCCCTCTGTTCCTAAATACTCC 59.036 45.833 0.00 0.00 0.00 3.85
4509 4824 6.239092 GCTACTCCCTCTGTTCCTAAATACTC 60.239 46.154 0.00 0.00 0.00 2.59
4510 4825 5.599242 GCTACTCCCTCTGTTCCTAAATACT 59.401 44.000 0.00 0.00 0.00 2.12
4511 4826 5.599242 AGCTACTCCCTCTGTTCCTAAATAC 59.401 44.000 0.00 0.00 0.00 1.89
4512 4827 5.778542 AGCTACTCCCTCTGTTCCTAAATA 58.221 41.667 0.00 0.00 0.00 1.40
4604 4919 1.154035 GAGCAAAAATGCGACCCCG 60.154 57.895 0.00 0.00 40.27 5.73
4623 4938 0.682209 GTGCCATGGGATCAGCTTGT 60.682 55.000 15.13 0.00 0.00 3.16
4759 5075 4.485163 GGGTTCATGAACAAAAGAATCCG 58.515 43.478 33.42 0.00 42.85 4.18
4851 5167 2.769602 ATTTAGGAGCGGAGGGAGTA 57.230 50.000 0.00 0.00 0.00 2.59
4852 5168 2.769602 TATTTAGGAGCGGAGGGAGT 57.230 50.000 0.00 0.00 0.00 3.85
4853 5169 4.202367 ACAAATATTTAGGAGCGGAGGGAG 60.202 45.833 0.00 0.00 0.00 4.30
4854 5170 3.714798 ACAAATATTTAGGAGCGGAGGGA 59.285 43.478 0.00 0.00 0.00 4.20
4855 5171 4.065789 GACAAATATTTAGGAGCGGAGGG 58.934 47.826 0.00 0.00 0.00 4.30
4856 5172 4.962155 AGACAAATATTTAGGAGCGGAGG 58.038 43.478 0.00 0.00 0.00 4.30
4857 5173 6.763610 AGAAAGACAAATATTTAGGAGCGGAG 59.236 38.462 0.00 0.00 0.00 4.63
4858 5174 6.650120 AGAAAGACAAATATTTAGGAGCGGA 58.350 36.000 0.00 0.00 0.00 5.54
4859 5175 6.927294 AGAAAGACAAATATTTAGGAGCGG 57.073 37.500 0.00 0.00 0.00 5.52
4860 5176 8.873215 TCTAGAAAGACAAATATTTAGGAGCG 57.127 34.615 0.00 0.00 0.00 5.03
4872 5188 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
4873 5189 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
4874 5190 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
4875 5191 8.785329 AGTCCATTTGAAATCTCTAGAAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
4876 5192 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
4877 5193 9.103861 GGTAGTCCATTTGAAATCTCTAGAAAG 57.896 37.037 0.00 0.00 0.00 2.62
4878 5194 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
4879 5195 8.041323 GTGGTAGTCCATTTGAAATCTCTAGAA 58.959 37.037 0.00 0.00 46.20 2.10
4880 5196 7.180229 TGTGGTAGTCCATTTGAAATCTCTAGA 59.820 37.037 0.00 0.00 46.20 2.43
4881 5197 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
4882 5198 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
4883 5199 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
4884 5200 8.562892 CATATGTGGTAGTCCATTTGAAATCTC 58.437 37.037 0.00 0.00 46.20 2.75
4885 5201 7.503566 CCATATGTGGTAGTCCATTTGAAATCT 59.496 37.037 0.00 0.00 46.20 2.40
4886 5202 7.502226 TCCATATGTGGTAGTCCATTTGAAATC 59.498 37.037 8.51 0.00 46.20 2.17
4887 5203 7.353525 TCCATATGTGGTAGTCCATTTGAAAT 58.646 34.615 8.51 0.00 46.20 2.17
4888 5204 6.726379 TCCATATGTGGTAGTCCATTTGAAA 58.274 36.000 8.51 0.00 46.20 2.69
4889 5205 6.320434 TCCATATGTGGTAGTCCATTTGAA 57.680 37.500 8.51 0.00 46.20 2.69
4890 5206 5.966853 TCCATATGTGGTAGTCCATTTGA 57.033 39.130 8.51 0.00 46.20 2.69
4891 5207 6.064060 ACATCCATATGTGGTAGTCCATTTG 58.936 40.000 8.51 0.00 44.79 2.32
4892 5208 6.266131 ACATCCATATGTGGTAGTCCATTT 57.734 37.500 8.51 0.00 44.79 2.32
4893 5209 5.912149 ACATCCATATGTGGTAGTCCATT 57.088 39.130 8.51 0.00 44.79 3.16
4894 5210 8.860517 ATATACATCCATATGTGGTAGTCCAT 57.139 34.615 8.51 3.29 45.99 3.41
4895 5211 9.421399 CTATATACATCCATATGTGGTAGTCCA 57.579 37.037 8.51 1.36 45.99 4.02
4896 5212 9.642343 TCTATATACATCCATATGTGGTAGTCC 57.358 37.037 8.51 0.00 45.99 3.85
4898 5214 9.990868 TGTCTATATACATCCATATGTGGTAGT 57.009 33.333 8.51 10.44 45.99 2.73
4908 5224 8.007742 GGAGGGAGTATGTCTATATACATCCAT 58.992 40.741 7.00 2.28 40.52 3.41
4909 5225 7.355101 GGAGGGAGTATGTCTATATACATCCA 58.645 42.308 7.00 0.00 40.52 3.41
4910 5226 6.487331 CGGAGGGAGTATGTCTATATACATCC 59.513 46.154 7.00 4.37 40.52 3.51
4911 5227 7.055378 ACGGAGGGAGTATGTCTATATACATC 58.945 42.308 7.00 1.22 40.52 3.06
4912 5228 6.971340 ACGGAGGGAGTATGTCTATATACAT 58.029 40.000 8.61 8.61 42.62 2.29
4913 5229 6.384342 ACGGAGGGAGTATGTCTATATACA 57.616 41.667 0.00 0.00 36.27 2.29
4914 5230 5.821995 GGACGGAGGGAGTATGTCTATATAC 59.178 48.000 0.00 0.00 34.48 1.47
4915 5231 5.104193 GGGACGGAGGGAGTATGTCTATATA 60.104 48.000 0.00 0.00 0.00 0.86
4916 5232 4.325187 GGGACGGAGGGAGTATGTCTATAT 60.325 50.000 0.00 0.00 0.00 0.86
4917 5233 3.009916 GGGACGGAGGGAGTATGTCTATA 59.990 52.174 0.00 0.00 0.00 1.31
4918 5234 2.225066 GGGACGGAGGGAGTATGTCTAT 60.225 54.545 0.00 0.00 0.00 1.98
4919 5235 1.144503 GGGACGGAGGGAGTATGTCTA 59.855 57.143 0.00 0.00 0.00 2.59
4920 5236 0.106116 GGGACGGAGGGAGTATGTCT 60.106 60.000 0.00 0.00 0.00 3.41
4921 5237 0.396695 TGGGACGGAGGGAGTATGTC 60.397 60.000 0.00 0.00 0.00 3.06
4922 5238 0.042131 TTGGGACGGAGGGAGTATGT 59.958 55.000 0.00 0.00 0.00 2.29
4923 5239 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39
4924 5240 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
4925 5241 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4926 5242 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
4927 5243 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4928 5244 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4929 5245 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4930 5246 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4931 5247 3.189287 CAGACAAGAATTTTGGGACGGAG 59.811 47.826 0.00 0.00 0.00 4.63
4932 5248 3.146066 CAGACAAGAATTTTGGGACGGA 58.854 45.455 0.00 0.00 0.00 4.69
4933 5249 3.146066 TCAGACAAGAATTTTGGGACGG 58.854 45.455 0.00 0.00 0.00 4.79
4934 5250 4.065088 TCTCAGACAAGAATTTTGGGACG 58.935 43.478 5.68 0.00 0.00 4.79
4935 5251 6.581171 AATCTCAGACAAGAATTTTGGGAC 57.419 37.500 5.68 0.00 0.00 4.46
4936 5252 6.550854 ACAAATCTCAGACAAGAATTTTGGGA 59.449 34.615 0.93 0.00 32.94 4.37
4937 5253 6.752168 ACAAATCTCAGACAAGAATTTTGGG 58.248 36.000 0.93 0.00 32.94 4.12
4938 5254 7.655490 AGACAAATCTCAGACAAGAATTTTGG 58.345 34.615 0.93 0.00 32.94 3.28
4944 5260 9.140286 CGTATTTAGACAAATCTCAGACAAGAA 57.860 33.333 0.00 0.00 35.88 2.52
4945 5261 7.759886 CCGTATTTAGACAAATCTCAGACAAGA 59.240 37.037 0.00 0.00 35.88 3.02
4946 5262 7.759886 TCCGTATTTAGACAAATCTCAGACAAG 59.240 37.037 0.00 0.00 35.88 3.16
4947 5263 7.608153 TCCGTATTTAGACAAATCTCAGACAA 58.392 34.615 0.00 0.00 35.88 3.18
4948 5264 7.165460 TCCGTATTTAGACAAATCTCAGACA 57.835 36.000 0.00 0.00 35.88 3.41
4949 5265 7.707035 ACATCCGTATTTAGACAAATCTCAGAC 59.293 37.037 0.00 0.00 35.88 3.51
4950 5266 7.782049 ACATCCGTATTTAGACAAATCTCAGA 58.218 34.615 0.00 0.00 35.88 3.27
4951 5267 9.698309 ATACATCCGTATTTAGACAAATCTCAG 57.302 33.333 0.00 0.00 34.53 3.35
4952 5268 9.692749 GATACATCCGTATTTAGACAAATCTCA 57.307 33.333 0.00 0.00 38.48 3.27
4953 5269 9.692749 TGATACATCCGTATTTAGACAAATCTC 57.307 33.333 0.00 0.00 38.48 2.75
4956 5272 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
4957 5273 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
4958 5274 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
4959 5275 8.002984 TGACTTGATACATCCGTATTTAGACA 57.997 34.615 0.00 0.00 38.48 3.41
4960 5276 8.916654 CATGACTTGATACATCCGTATTTAGAC 58.083 37.037 0.00 0.00 38.48 2.59
4961 5277 8.638873 ACATGACTTGATACATCCGTATTTAGA 58.361 33.333 0.00 0.00 38.48 2.10
4962 5278 8.818141 ACATGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
4963 5279 9.607988 AAACATGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
4964 5280 8.506168 AAACATGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
4965 5281 8.506168 AAAACATGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
4966 5282 9.261180 CTAAAACATGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
4967 5283 8.255206 ACTAAAACATGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 0.00 4.02
4968 5284 7.103641 ACTAAAACATGACTTGATACATCCGT 58.896 34.615 0.00 0.00 0.00 4.69
4969 5285 7.539712 ACTAAAACATGACTTGATACATCCG 57.460 36.000 0.00 0.00 0.00 4.18
5000 5316 9.011095 CCTTAGATTTGTCTAGATACGGATGTA 57.989 37.037 0.00 0.00 34.45 2.29
5001 5317 7.524038 GCCTTAGATTTGTCTAGATACGGATGT 60.524 40.741 0.00 0.00 0.00 3.06
5002 5318 6.809196 GCCTTAGATTTGTCTAGATACGGATG 59.191 42.308 0.00 0.00 0.00 3.51
5003 5319 6.493802 TGCCTTAGATTTGTCTAGATACGGAT 59.506 38.462 0.00 0.00 0.00 4.18
5004 5320 5.831525 TGCCTTAGATTTGTCTAGATACGGA 59.168 40.000 0.00 0.00 0.00 4.69
5005 5321 6.085555 TGCCTTAGATTTGTCTAGATACGG 57.914 41.667 0.00 0.00 0.00 4.02
5006 5322 7.426410 TCTTGCCTTAGATTTGTCTAGATACG 58.574 38.462 0.00 0.00 0.00 3.06
5007 5323 9.771534 ATTCTTGCCTTAGATTTGTCTAGATAC 57.228 33.333 0.00 0.00 0.00 2.24
5009 5325 9.692325 AAATTCTTGCCTTAGATTTGTCTAGAT 57.308 29.630 0.00 0.00 0.00 1.98
5010 5326 9.520515 AAAATTCTTGCCTTAGATTTGTCTAGA 57.479 29.630 0.00 0.00 0.00 2.43
5011 5327 9.565213 CAAAATTCTTGCCTTAGATTTGTCTAG 57.435 33.333 0.00 0.00 0.00 2.43
5012 5328 8.522830 CCAAAATTCTTGCCTTAGATTTGTCTA 58.477 33.333 0.00 0.00 28.79 2.59
5013 5329 7.381323 CCAAAATTCTTGCCTTAGATTTGTCT 58.619 34.615 0.00 0.00 28.79 3.41
5014 5330 6.591448 CCCAAAATTCTTGCCTTAGATTTGTC 59.409 38.462 0.00 0.00 28.79 3.18
5015 5331 6.269769 TCCCAAAATTCTTGCCTTAGATTTGT 59.730 34.615 0.00 0.00 28.79 2.83
5016 5332 6.700352 TCCCAAAATTCTTGCCTTAGATTTG 58.300 36.000 0.00 0.00 29.84 2.32
5017 5333 6.933514 TCCCAAAATTCTTGCCTTAGATTT 57.066 33.333 0.00 0.00 0.00 2.17
5018 5334 6.126968 CCATCCCAAAATTCTTGCCTTAGATT 60.127 38.462 0.00 0.00 0.00 2.40
5019 5335 5.364735 CCATCCCAAAATTCTTGCCTTAGAT 59.635 40.000 0.00 0.00 0.00 1.98
5020 5336 4.711355 CCATCCCAAAATTCTTGCCTTAGA 59.289 41.667 0.00 0.00 0.00 2.10
5021 5337 4.711355 TCCATCCCAAAATTCTTGCCTTAG 59.289 41.667 0.00 0.00 0.00 2.18
5022 5338 4.682563 TCCATCCCAAAATTCTTGCCTTA 58.317 39.130 0.00 0.00 0.00 2.69
5023 5339 3.516700 CTCCATCCCAAAATTCTTGCCTT 59.483 43.478 0.00 0.00 0.00 4.35
5024 5340 3.102204 CTCCATCCCAAAATTCTTGCCT 58.898 45.455 0.00 0.00 0.00 4.75
5025 5341 2.169144 CCTCCATCCCAAAATTCTTGCC 59.831 50.000 0.00 0.00 0.00 4.52
5026 5342 2.169144 CCCTCCATCCCAAAATTCTTGC 59.831 50.000 0.00 0.00 0.00 4.01
5027 5343 3.703052 CTCCCTCCATCCCAAAATTCTTG 59.297 47.826 0.00 0.00 0.00 3.02
5028 5344 3.337909 ACTCCCTCCATCCCAAAATTCTT 59.662 43.478 0.00 0.00 0.00 2.52
5029 5345 2.929043 ACTCCCTCCATCCCAAAATTCT 59.071 45.455 0.00 0.00 0.00 2.40
5030 5346 3.388552 ACTCCCTCCATCCCAAAATTC 57.611 47.619 0.00 0.00 0.00 2.17
5031 5347 5.487861 AATACTCCCTCCATCCCAAAATT 57.512 39.130 0.00 0.00 0.00 1.82
5032 5348 5.487861 AAATACTCCCTCCATCCCAAAAT 57.512 39.130 0.00 0.00 0.00 1.82
5033 5349 4.965283 AAATACTCCCTCCATCCCAAAA 57.035 40.909 0.00 0.00 0.00 2.44
5034 5350 4.965283 AAAATACTCCCTCCATCCCAAA 57.035 40.909 0.00 0.00 0.00 3.28
5035 5351 5.293643 TCTAAAATACTCCCTCCATCCCAA 58.706 41.667 0.00 0.00 0.00 4.12
5036 5352 4.903149 TCTAAAATACTCCCTCCATCCCA 58.097 43.478 0.00 0.00 0.00 4.37
5037 5353 4.908481 ACTCTAAAATACTCCCTCCATCCC 59.092 45.833 0.00 0.00 0.00 3.85
5038 5354 5.367060 ACACTCTAAAATACTCCCTCCATCC 59.633 44.000 0.00 0.00 0.00 3.51
5039 5355 6.487299 ACACTCTAAAATACTCCCTCCATC 57.513 41.667 0.00 0.00 0.00 3.51
5040 5356 7.363031 TCTACACTCTAAAATACTCCCTCCAT 58.637 38.462 0.00 0.00 0.00 3.41
5041 5357 6.738635 TCTACACTCTAAAATACTCCCTCCA 58.261 40.000 0.00 0.00 0.00 3.86
5042 5358 7.842887 ATCTACACTCTAAAATACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
5043 5359 8.915036 TGAATCTACACTCTAAAATACTCCCTC 58.085 37.037 0.00 0.00 0.00 4.30
5044 5360 8.697292 GTGAATCTACACTCTAAAATACTCCCT 58.303 37.037 0.00 0.00 37.73 4.20
5045 5361 8.697292 AGTGAATCTACACTCTAAAATACTCCC 58.303 37.037 0.00 0.00 46.36 4.30
5059 5375 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
5060 5376 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5061 5377 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5062 5378 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5063 5379 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5064 5380 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5065 5381 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5066 5382 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5067 5383 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5068 5384 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5069 5385 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5070 5386 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
5071 5387 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5072 5388 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5073 5389 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5074 5390 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5075 5391 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5076 5392 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5077 5393 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5078 5394 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5079 5395 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5080 5396 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5081 5397 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5082 5398 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5083 5399 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5085 5401 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5086 5402 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5087 5403 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5088 5404 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5089 5405 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5090 5406 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5091 5407 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5092 5408 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5093 5409 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5106 5422 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5107 5423 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5108 5424 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5109 5425 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5110 5426 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5111 5427 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5112 5428 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5113 5429 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5114 5430 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5115 5431 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5116 5432 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5117 5433 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5118 5434 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
5119 5435 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5120 5436 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5121 5437 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5122 5438 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5123 5439 4.273318 GTTACTACTCCCTCCGTTCCTAA 58.727 47.826 0.00 0.00 0.00 2.69
5124 5440 3.372025 GGTTACTACTCCCTCCGTTCCTA 60.372 52.174 0.00 0.00 0.00 2.94
5125 5441 2.622714 GGTTACTACTCCCTCCGTTCCT 60.623 54.545 0.00 0.00 0.00 3.36
5126 5442 1.753649 GGTTACTACTCCCTCCGTTCC 59.246 57.143 0.00 0.00 0.00 3.62
5127 5443 2.450476 TGGTTACTACTCCCTCCGTTC 58.550 52.381 0.00 0.00 0.00 3.95
5128 5444 2.610438 TGGTTACTACTCCCTCCGTT 57.390 50.000 0.00 0.00 0.00 4.44
5129 5445 2.610438 TTGGTTACTACTCCCTCCGT 57.390 50.000 0.00 0.00 0.00 4.69
5130 5446 4.501058 GCTTATTGGTTACTACTCCCTCCG 60.501 50.000 0.00 0.00 0.00 4.63
5131 5447 4.654724 AGCTTATTGGTTACTACTCCCTCC 59.345 45.833 0.00 0.00 0.00 4.30
5132 5448 5.602628 CAGCTTATTGGTTACTACTCCCTC 58.397 45.833 0.00 0.00 0.00 4.30
5133 5449 4.141688 GCAGCTTATTGGTTACTACTCCCT 60.142 45.833 0.00 0.00 0.00 4.20
5134 5450 4.127907 GCAGCTTATTGGTTACTACTCCC 58.872 47.826 0.00 0.00 0.00 4.30
5135 5451 4.766375 TGCAGCTTATTGGTTACTACTCC 58.234 43.478 0.00 0.00 0.00 3.85
5136 5452 6.316390 ACAATGCAGCTTATTGGTTACTACTC 59.684 38.462 19.33 0.00 39.30 2.59
5137 5453 6.094048 CACAATGCAGCTTATTGGTTACTACT 59.906 38.462 19.33 0.08 39.30 2.57
5138 5454 6.258160 CACAATGCAGCTTATTGGTTACTAC 58.742 40.000 19.33 0.00 39.30 2.73
5253 5577 6.429692 CCACAGGTGATATGTTTCTGTTAACA 59.570 38.462 8.28 8.28 41.81 2.41
5526 5859 8.765219 ACTGCAACTTGATGAATATAATACGTC 58.235 33.333 0.00 0.00 0.00 4.34
5529 5864 8.344831 TGCACTGCAACTTGATGAATATAATAC 58.655 33.333 0.00 0.00 34.76 1.89
5553 5888 4.906065 TTGCATGAGATGGAATAACTGC 57.094 40.909 0.00 0.00 35.60 4.40
5627 5962 7.981102 AGTACTTTCTAAACAAAGGTCCATC 57.019 36.000 0.00 0.00 37.65 3.51
5669 6005 2.122768 ACTCCTCCCTGCCAGAAATAG 58.877 52.381 0.00 0.00 0.00 1.73
5675 6011 2.673523 CCAACTCCTCCCTGCCAG 59.326 66.667 0.00 0.00 0.00 4.85
5885 6221 5.122396 CCGTTTCCATTTGTAAGAGGAGAAG 59.878 44.000 0.00 0.00 0.00 2.85
5935 6310 3.018856 AGTCATCGACATTACCACGGTA 58.981 45.455 0.00 0.00 34.60 4.02
5939 6314 3.181510 GGCAAAGTCATCGACATTACCAC 60.182 47.826 0.00 0.00 34.60 4.16
6025 6400 0.691078 GAGGTGGGAGGGTGATAGCA 60.691 60.000 0.00 0.00 0.00 3.49
6127 6502 5.664294 TGGCTTGCTGTATGATTTTCATT 57.336 34.783 0.00 0.00 38.26 2.57
6200 6575 0.482446 ATCCTTGCCTGTTTCCCACA 59.518 50.000 0.00 0.00 0.00 4.17
6234 6615 3.119352 AGCATTCGGCCTTGAAATTTCTC 60.119 43.478 18.64 5.91 46.50 2.87
6249 6630 4.031314 TGTTTATTCGTTCGAGAGCATTCG 59.969 41.667 3.75 3.75 41.79 3.34
6310 6691 2.249309 CGAGTGTTGTTGCTGCCG 59.751 61.111 0.00 0.00 0.00 5.69
6311 6692 1.009675 CACGAGTGTTGTTGCTGCC 60.010 57.895 0.00 0.00 0.00 4.85
6312 6693 0.588252 ATCACGAGTGTTGTTGCTGC 59.412 50.000 2.97 0.00 0.00 5.25
6313 6694 3.679502 TGATATCACGAGTGTTGTTGCTG 59.320 43.478 0.00 0.00 0.00 4.41
6314 6695 3.925379 TGATATCACGAGTGTTGTTGCT 58.075 40.909 0.00 0.00 0.00 3.91
6315 6696 4.152402 ACTTGATATCACGAGTGTTGTTGC 59.848 41.667 15.55 0.00 33.77 4.17
6316 6697 5.405269 TGACTTGATATCACGAGTGTTGTTG 59.595 40.000 15.55 0.00 35.00 3.33
6317 6698 5.538118 TGACTTGATATCACGAGTGTTGTT 58.462 37.500 15.55 0.00 35.00 2.83
6318 6699 5.134202 TGACTTGATATCACGAGTGTTGT 57.866 39.130 15.55 1.03 35.00 3.32
6446 6840 3.586174 AGCCATCATCTAGTGCATACCAT 59.414 43.478 0.00 0.00 0.00 3.55
6481 6890 5.928264 GGTTTGCCATGAAAATATCCTATGC 59.072 40.000 0.00 0.00 34.09 3.14
6487 6896 9.768662 ATTATTGAGGTTTGCCATGAAAATATC 57.231 29.630 0.00 0.00 37.19 1.63
6574 6983 2.670414 GTGAAGAAGCAGAGACGATTGG 59.330 50.000 0.00 0.00 0.00 3.16
6576 6985 2.300152 TGGTGAAGAAGCAGAGACGATT 59.700 45.455 0.00 0.00 0.00 3.34
6602 7011 1.120530 GATGCGGAAGAGTCCCCTAA 58.879 55.000 0.00 0.00 41.44 2.69
6626 7043 4.006319 GCCTGAAGCTGTTTAAGATCAGT 58.994 43.478 6.95 0.00 38.65 3.41
6763 7182 6.885918 TGGATGGCAATCTGGTGTATTATATG 59.114 38.462 0.00 0.00 32.95 1.78
6768 7187 3.559069 CTGGATGGCAATCTGGTGTATT 58.441 45.455 0.00 0.00 32.95 1.89
6834 7253 1.179152 TCGCACTAAGGATGGACGAA 58.821 50.000 0.00 0.00 0.00 3.85
6910 7329 9.715121 TTAGTAGTTTAGTTGTTCATACCTTGG 57.285 33.333 0.00 0.00 0.00 3.61
6975 7394 0.517316 GATCGCCAAGGTGTGTGTTC 59.483 55.000 0.00 0.00 0.00 3.18
6981 7400 1.078848 GCAGAGATCGCCAAGGTGT 60.079 57.895 0.00 0.00 0.00 4.16
7000 7419 5.925509 ACTACAGACAATACAACCAACACT 58.074 37.500 0.00 0.00 0.00 3.55
7295 7737 5.238432 ACATCTGAAACTTATTGTGTTCGCA 59.762 36.000 0.00 0.00 0.00 5.10
7296 7738 5.689819 ACATCTGAAACTTATTGTGTTCGC 58.310 37.500 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.