Multiple sequence alignment - TraesCS4B01G112100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G112100 chr4B 100.000 4133 0 0 1 4133 125683054 125678922 0.000000e+00 7633
1 TraesCS4B01G112100 chr4D 94.921 3623 143 29 540 4133 88907272 88903662 0.000000e+00 5633
2 TraesCS4B01G112100 chr4A 93.197 3557 138 44 540 4034 501640815 501637301 0.000000e+00 5132
3 TraesCS4B01G112100 chr5A 82.362 1338 207 21 1782 3115 267005523 267006835 0.000000e+00 1136
4 TraesCS4B01G112100 chr5D 82.212 1338 209 22 1782 3115 207179064 207180376 0.000000e+00 1125
5 TraesCS4B01G112100 chr5B 81.927 1339 211 21 1782 3115 220581749 220580437 0.000000e+00 1103
6 TraesCS4B01G112100 chr5B 91.867 541 44 0 1 541 521146916 521147456 0.000000e+00 756
7 TraesCS4B01G112100 chr6B 88.745 542 48 8 1 541 41401670 41401141 0.000000e+00 651
8 TraesCS4B01G112100 chr1B 84.956 565 59 10 1 544 331452003 331451444 2.170000e-152 549
9 TraesCS4B01G112100 chr7B 82.031 512 76 5 41 540 439282738 439282231 4.940000e-114 422
10 TraesCS4B01G112100 chr1A 78.333 540 105 12 7 541 98600297 98600829 5.120000e-89 339


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G112100 chr4B 125678922 125683054 4132 True 7633 7633 100.000 1 4133 1 chr4B.!!$R1 4132
1 TraesCS4B01G112100 chr4D 88903662 88907272 3610 True 5633 5633 94.921 540 4133 1 chr4D.!!$R1 3593
2 TraesCS4B01G112100 chr4A 501637301 501640815 3514 True 5132 5132 93.197 540 4034 1 chr4A.!!$R1 3494
3 TraesCS4B01G112100 chr5A 267005523 267006835 1312 False 1136 1136 82.362 1782 3115 1 chr5A.!!$F1 1333
4 TraesCS4B01G112100 chr5D 207179064 207180376 1312 False 1125 1125 82.212 1782 3115 1 chr5D.!!$F1 1333
5 TraesCS4B01G112100 chr5B 220580437 220581749 1312 True 1103 1103 81.927 1782 3115 1 chr5B.!!$R1 1333
6 TraesCS4B01G112100 chr5B 521146916 521147456 540 False 756 756 91.867 1 541 1 chr5B.!!$F1 540
7 TraesCS4B01G112100 chr6B 41401141 41401670 529 True 651 651 88.745 1 541 1 chr6B.!!$R1 540
8 TraesCS4B01G112100 chr1B 331451444 331452003 559 True 549 549 84.956 1 544 1 chr1B.!!$R1 543
9 TraesCS4B01G112100 chr7B 439282231 439282738 507 True 422 422 82.031 41 540 1 chr7B.!!$R1 499
10 TraesCS4B01G112100 chr1A 98600297 98600829 532 False 339 339 78.333 7 541 1 chr1A.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.105964 TGGATTATGGAACGCGAGGG 59.894 55.0 15.93 0.0 0.00 4.30 F
857 892 0.258774 CCCTAACACCTCCCCCATTG 59.741 60.0 0.00 0.0 0.00 2.82 F
1393 1428 0.102481 GATAGCGCAGTCGGAGGAAA 59.898 55.0 11.47 0.0 35.95 3.13 F
1533 1568 0.322187 GGGCCGTCAAGTACACCATT 60.322 55.0 0.00 0.0 0.00 3.16 F
2085 2120 1.166531 GCCTTGGCCGCGATATCTTT 61.167 55.0 8.23 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1426 0.037734 CGCCCACTTACCCTCCTTTT 59.962 55.000 0.00 0.00 0.00 2.27 R
1940 1975 1.005289 AGCCCCTCCCATGACATCT 59.995 57.895 0.00 0.00 0.00 2.90 R
2227 2262 1.734465 GGCTTTGTTCGTGGAGATGAG 59.266 52.381 0.00 0.00 0.00 2.90 R
3060 3095 2.043852 ATGCCCTCGAGGTCGTCT 60.044 61.111 29.25 7.05 40.80 4.18 R
3582 3625 0.395311 CCATGCCACTTCTCATGCCT 60.395 55.000 0.00 0.00 38.89 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.394712 GTGTGGAGCAGGACGGGG 62.395 72.222 0.00 0.00 0.00 5.73
136 137 2.243221 AGGATTTCCTATGCAGCAACCT 59.757 45.455 0.00 0.00 46.48 3.50
203 204 3.129287 CAGGTGCAGTTGGATTATGGAAC 59.871 47.826 0.00 0.00 0.00 3.62
210 211 0.105964 TGGATTATGGAACGCGAGGG 59.894 55.000 15.93 0.00 0.00 4.30
267 268 1.080705 CGAACACTCCACGAGGTCC 60.081 63.158 0.00 0.00 33.35 4.46
336 337 4.222145 ACCGCTCTACAATTAGAAACTGGA 59.778 41.667 0.00 0.00 33.73 3.86
338 339 5.411781 CGCTCTACAATTAGAAACTGGACT 58.588 41.667 0.00 0.00 33.73 3.85
344 345 8.593679 TCTACAATTAGAAACTGGACTGATCAA 58.406 33.333 0.00 0.00 30.88 2.57
380 400 4.430441 AGAAGTATCACCACTCCTTTCCT 58.570 43.478 0.00 0.00 0.00 3.36
429 449 2.043652 GGTGGTGGCCTGATGCAT 60.044 61.111 3.32 0.00 43.89 3.96
473 493 2.799126 TCATGTAATCGGCCTTTGGT 57.201 45.000 0.00 0.00 0.00 3.67
507 529 5.941058 TCTTACCCGTTTTGAATGCATAAGA 59.059 36.000 0.00 0.00 0.00 2.10
514 537 8.137437 CCCGTTTTGAATGCATAAGATAGAAAT 58.863 33.333 0.00 0.00 0.00 2.17
586 609 3.717350 GAACCGTTCGATCGAAAACAT 57.283 42.857 30.61 17.74 35.75 2.71
589 612 4.772046 ACCGTTCGATCGAAAACATATG 57.228 40.909 30.61 13.98 35.75 1.78
594 621 5.220135 CGTTCGATCGAAAACATATGTGACA 60.220 40.000 30.61 1.99 35.75 3.58
643 670 2.941064 AGCTTCATCCATCATGTGAACG 59.059 45.455 0.00 0.00 33.66 3.95
688 723 6.718522 AAAAGACTCCCCACGAAATAAAAA 57.281 33.333 0.00 0.00 0.00 1.94
689 724 5.700722 AAGACTCCCCACGAAATAAAAAC 57.299 39.130 0.00 0.00 0.00 2.43
692 727 5.595133 AGACTCCCCACGAAATAAAAACAAA 59.405 36.000 0.00 0.00 0.00 2.83
693 728 5.593968 ACTCCCCACGAAATAAAAACAAAC 58.406 37.500 0.00 0.00 0.00 2.93
721 756 6.413783 AAGCCCTAAAATCGGAAAAAGAAA 57.586 33.333 0.00 0.00 0.00 2.52
722 757 6.025749 AGCCCTAAAATCGGAAAAAGAAAG 57.974 37.500 0.00 0.00 0.00 2.62
723 758 5.773176 AGCCCTAAAATCGGAAAAAGAAAGA 59.227 36.000 0.00 0.00 0.00 2.52
724 759 6.266786 AGCCCTAAAATCGGAAAAAGAAAGAA 59.733 34.615 0.00 0.00 0.00 2.52
851 886 2.980177 GCCACCCCTAACACCTCCC 61.980 68.421 0.00 0.00 0.00 4.30
857 892 0.258774 CCCTAACACCTCCCCCATTG 59.741 60.000 0.00 0.00 0.00 2.82
895 930 1.519246 CTCTCTCTCCGCCATTGCA 59.481 57.895 0.00 0.00 37.32 4.08
1119 1154 0.463654 TCGGCGCCATCAAGCTAAAT 60.464 50.000 28.98 0.00 0.00 1.40
1275 1310 2.826738 GACCTCGCCGAGCTCTCT 60.827 66.667 9.01 0.00 0.00 3.10
1391 1426 1.152943 AGATAGCGCAGTCGGAGGA 60.153 57.895 11.47 0.00 35.95 3.71
1393 1428 0.102481 GATAGCGCAGTCGGAGGAAA 59.898 55.000 11.47 0.00 35.95 3.13
1533 1568 0.322187 GGGCCGTCAAGTACACCATT 60.322 55.000 0.00 0.00 0.00 3.16
1539 1574 2.690786 GTCAAGTACACCATTGGCGTA 58.309 47.619 1.54 0.29 0.00 4.42
1766 1801 4.052229 CGACGACGCCTCCCAGTT 62.052 66.667 0.00 0.00 0.00 3.16
1940 1975 2.076100 GAGCATTGACGATGTGGTGAA 58.924 47.619 4.58 0.00 38.07 3.18
1945 1980 3.401033 TTGACGATGTGGTGAAGATGT 57.599 42.857 0.00 0.00 0.00 3.06
2044 2079 3.735029 ACGACCTCTGCGTCCGTC 61.735 66.667 0.00 0.00 37.42 4.79
2046 2081 2.104859 CGACCTCTGCGTCCGTCTA 61.105 63.158 0.00 0.00 0.00 2.59
2085 2120 1.166531 GCCTTGGCCGCGATATCTTT 61.167 55.000 8.23 0.00 0.00 2.52
2376 2411 2.107953 GAGAGCTCCATCCGTGCC 59.892 66.667 10.93 0.00 0.00 5.01
2886 2921 2.395360 GCAGTTCAACGCGGCCATA 61.395 57.895 12.47 0.00 0.00 2.74
3060 3095 2.455674 AGTACATCAAGTTGAGCGCA 57.544 45.000 11.47 0.00 0.00 6.09
3263 3298 1.202302 GCGTCGAGTGATCAATCCTCA 60.202 52.381 16.96 0.00 0.00 3.86
3431 3472 1.197492 GACGTTGCATGCATGTCTCAA 59.803 47.619 31.07 19.04 32.50 3.02
3447 3488 0.035439 TCAAGAATCCTGCGGTTCCC 60.035 55.000 0.00 0.00 0.00 3.97
3476 3517 2.751166 AATAGCGGGATCTTGATCCG 57.249 50.000 19.72 16.18 45.84 4.18
3535 3576 2.420022 GCATATGGAGCTCACGTTGTTT 59.580 45.455 17.19 0.00 0.00 2.83
3542 3583 3.059800 GGAGCTCACGTTGTTTTGTACTC 60.060 47.826 17.19 0.00 0.00 2.59
3550 3591 6.038825 TCACGTTGTTTTGTACTCCATGATTT 59.961 34.615 0.00 0.00 0.00 2.17
3559 3600 6.801539 TGTACTCCATGATTTGTTTGACTC 57.198 37.500 0.00 0.00 0.00 3.36
3581 3624 8.940397 ACTCCCTCTTTTCTAATTCATTTTCA 57.060 30.769 0.00 0.00 0.00 2.69
3582 3625 9.367160 ACTCCCTCTTTTCTAATTCATTTTCAA 57.633 29.630 0.00 0.00 0.00 2.69
3624 3686 5.010012 GGGACACCAAATAATCCAAGCTATG 59.990 44.000 0.00 0.00 36.50 2.23
3625 3687 5.594317 GGACACCAAATAATCCAAGCTATGT 59.406 40.000 0.00 0.00 0.00 2.29
3665 3729 9.766754 TGGAGATGCTTCTTTCTATCTATCTAT 57.233 33.333 3.29 0.00 30.49 1.98
3709 3778 3.543680 ATACAGCCGCTACTGATGTTT 57.456 42.857 9.56 0.00 40.25 2.83
3710 3779 1.726853 ACAGCCGCTACTGATGTTTC 58.273 50.000 9.56 0.00 40.25 2.78
3712 3781 1.929836 CAGCCGCTACTGATGTTTCTC 59.070 52.381 0.00 0.00 40.25 2.87
3714 3783 2.159170 AGCCGCTACTGATGTTTCTCTC 60.159 50.000 0.00 0.00 0.00 3.20
3748 3818 6.594937 ACGTTAGCCCGACTTCATAAATAAAA 59.405 34.615 0.00 0.00 0.00 1.52
3755 3825 7.027161 CCCGACTTCATAAATAAAACCAACAG 58.973 38.462 0.00 0.00 0.00 3.16
3774 3862 2.359354 CATCCCACGAACGCCCAA 60.359 61.111 0.00 0.00 0.00 4.12
3777 3865 1.241315 ATCCCACGAACGCCCAAAAG 61.241 55.000 0.00 0.00 0.00 2.27
3874 3962 4.486125 ACAACCAGCAAAAGGAAAACAT 57.514 36.364 0.00 0.00 0.00 2.71
3894 3982 0.254178 AATGAGACGAAGGCAGCCAT 59.746 50.000 15.80 0.00 0.00 4.40
3944 4032 2.689766 GCGCACGATCTTGACGAC 59.310 61.111 16.17 7.17 34.70 4.34
3949 4037 2.791503 CGCACGATCTTGACGACATAGT 60.792 50.000 2.89 0.00 34.70 2.12
3955 4043 4.731000 CGATCTTGACGACATAGTGAAGAC 59.269 45.833 1.51 0.00 44.56 3.01
3965 4053 3.693085 ACATAGTGAAGACGTCGTGGTAT 59.307 43.478 9.23 1.92 0.00 2.73
4023 4111 2.932614 CTCCTTGTCGCACTCCTTAATG 59.067 50.000 0.00 0.00 0.00 1.90
4042 4130 3.805066 TGAATGATCTCCCAAACCACA 57.195 42.857 0.00 0.00 0.00 4.17
4062 4150 0.771127 AAGGTTCTTAGGCCTGCACA 59.229 50.000 17.99 0.00 34.90 4.57
4063 4151 0.995024 AGGTTCTTAGGCCTGCACAT 59.005 50.000 17.99 0.70 33.13 3.21
4083 4171 9.941325 TGCACATAATCTTCCATTTAACAAATT 57.059 25.926 0.00 0.00 0.00 1.82
4106 4194 4.994852 TGGTATTTCTTCTTGTTCTCCGTG 59.005 41.667 0.00 0.00 0.00 4.94
4114 4202 2.637872 TCTTGTTCTCCGTGGAATTCCT 59.362 45.455 24.73 0.00 36.82 3.36
4130 4218 3.899052 TTCCTATGGAAACCACTACGG 57.101 47.619 0.00 0.00 38.93 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.543277 CTCTCCACTGCTGGGCATAA 59.457 55.000 0.00 0.00 38.13 1.90
80 81 3.072486 AATGGCCGATGCAAGCAGC 62.072 57.895 0.00 0.00 45.96 5.25
136 137 3.199946 CCTCCCATAAGTAGCAGTTGGAA 59.800 47.826 0.00 0.00 0.00 3.53
210 211 3.383185 TCATTATTGAAAACCCGGGCATC 59.617 43.478 24.08 17.14 0.00 3.91
267 268 7.243604 AGCTCCATAATCTAAGAAGATCAGG 57.756 40.000 0.00 0.00 41.81 3.86
314 315 4.567159 GTCCAGTTTCTAATTGTAGAGCGG 59.433 45.833 0.00 0.00 37.65 5.52
336 337 3.177228 AGGAAGCTACCAGTTGATCAGT 58.823 45.455 0.00 0.00 0.00 3.41
338 339 4.610333 TCTAGGAAGCTACCAGTTGATCA 58.390 43.478 0.00 0.00 0.00 2.92
344 345 5.595133 GTGATACTTCTAGGAAGCTACCAGT 59.405 44.000 7.14 0.00 0.00 4.00
380 400 4.165372 GGAAGATAGTTACATGGGTTGGGA 59.835 45.833 0.00 0.00 0.00 4.37
429 449 2.206750 GGTGTAAACGTGCACTGAGAA 58.793 47.619 16.19 0.00 40.01 2.87
579 602 3.426159 CCGTGGCTGTCACATATGTTTTC 60.426 47.826 13.41 0.38 46.36 2.29
586 609 1.897423 CCTCCGTGGCTGTCACATA 59.103 57.895 13.41 0.00 46.36 2.29
623 650 2.540361 GCGTTCACATGATGGATGAAGC 60.540 50.000 0.00 1.32 35.80 3.86
643 670 2.105766 TCTTTCCCTAGGAACGGTAGC 58.894 52.381 11.48 0.00 41.87 3.58
669 696 5.441709 TTGTTTTTATTTCGTGGGGAGTC 57.558 39.130 0.00 0.00 0.00 3.36
709 744 5.067153 TGTCATTGCTTCTTTCTTTTTCCGA 59.933 36.000 0.00 0.00 0.00 4.55
712 747 7.962917 TGTTTGTCATTGCTTCTTTCTTTTTC 58.037 30.769 0.00 0.00 0.00 2.29
718 753 8.275632 GGTTAATTGTTTGTCATTGCTTCTTTC 58.724 33.333 0.00 0.00 0.00 2.62
721 756 6.815089 TGGTTAATTGTTTGTCATTGCTTCT 58.185 32.000 0.00 0.00 0.00 2.85
722 757 7.344441 GTTGGTTAATTGTTTGTCATTGCTTC 58.656 34.615 0.00 0.00 0.00 3.86
723 758 6.019156 CGTTGGTTAATTGTTTGTCATTGCTT 60.019 34.615 0.00 0.00 0.00 3.91
724 759 5.461737 CGTTGGTTAATTGTTTGTCATTGCT 59.538 36.000 0.00 0.00 0.00 3.91
842 877 0.849094 TAGGCAATGGGGGAGGTGTT 60.849 55.000 0.00 0.00 0.00 3.32
851 886 2.618794 AGAGAGAGGATAGGCAATGGG 58.381 52.381 0.00 0.00 0.00 4.00
857 892 2.110011 AGGGAGAAGAGAGAGGATAGGC 59.890 54.545 0.00 0.00 0.00 3.93
1077 1112 3.659089 GAGGTTGCGGCCGAGCTTA 62.659 63.158 33.48 5.78 38.13 3.09
1391 1426 0.037734 CGCCCACTTACCCTCCTTTT 59.962 55.000 0.00 0.00 0.00 2.27
1393 1428 2.967946 GCGCCCACTTACCCTCCTT 61.968 63.158 0.00 0.00 0.00 3.36
1614 1649 3.747976 GGCGTTTTGGCGAGGCAT 61.748 61.111 0.00 0.00 0.00 4.40
1714 1749 2.995574 AGTGGGAGGAACGACGGG 60.996 66.667 0.00 0.00 0.00 5.28
1850 1885 1.669440 GCCACGAGGAACACCTGTA 59.331 57.895 1.86 0.00 36.89 2.74
1940 1975 1.005289 AGCCCCTCCCATGACATCT 59.995 57.895 0.00 0.00 0.00 2.90
1945 1980 2.444706 CTCGAGCCCCTCCCATGA 60.445 66.667 0.00 0.00 0.00 3.07
2227 2262 1.734465 GGCTTTGTTCGTGGAGATGAG 59.266 52.381 0.00 0.00 0.00 2.90
2385 2420 4.351054 CCGGGGACAGGCTGCTTT 62.351 66.667 15.89 0.00 0.00 3.51
2886 2921 2.473760 CGTCCGCTGGATCTCGTCT 61.474 63.158 0.67 0.00 32.73 4.18
3009 3044 4.680237 CCCGCGGTGAAGTGCTGA 62.680 66.667 26.12 0.00 0.00 4.26
3060 3095 2.043852 ATGCCCTCGAGGTCGTCT 60.044 61.111 29.25 7.05 40.80 4.18
3371 3410 2.354259 AGCCGCAGAAGAAGAATCAAG 58.646 47.619 0.00 0.00 0.00 3.02
3372 3411 2.479566 AGCCGCAGAAGAAGAATCAA 57.520 45.000 0.00 0.00 0.00 2.57
3373 3412 3.610040 TTAGCCGCAGAAGAAGAATCA 57.390 42.857 0.00 0.00 0.00 2.57
3374 3413 3.183373 CGATTAGCCGCAGAAGAAGAATC 59.817 47.826 0.00 0.00 0.00 2.52
3375 3414 3.126831 CGATTAGCCGCAGAAGAAGAAT 58.873 45.455 0.00 0.00 0.00 2.40
3376 3415 2.540515 CGATTAGCCGCAGAAGAAGAA 58.459 47.619 0.00 0.00 0.00 2.52
3447 3488 7.258441 TCAAGATCCCGCTATTATTATTCTCG 58.742 38.462 0.00 0.00 0.00 4.04
3476 3517 2.281345 CGCCAGCCCTCCATGATC 60.281 66.667 0.00 0.00 0.00 2.92
3535 3576 6.206634 GGAGTCAAACAAATCATGGAGTACAA 59.793 38.462 0.00 0.00 0.00 2.41
3542 3583 4.338879 AGAGGGAGTCAAACAAATCATGG 58.661 43.478 0.00 0.00 0.00 3.66
3550 3591 7.287061 TGAATTAGAAAAGAGGGAGTCAAACA 58.713 34.615 0.00 0.00 0.00 2.83
3559 3600 7.547019 GCCTTGAAAATGAATTAGAAAAGAGGG 59.453 37.037 0.00 0.00 0.00 4.30
3581 3624 1.471119 CATGCCACTTCTCATGCCTT 58.529 50.000 0.00 0.00 34.44 4.35
3582 3625 0.395311 CCATGCCACTTCTCATGCCT 60.395 55.000 0.00 0.00 38.89 4.75
3680 3746 5.878116 TCAGTAGCGGCTGTATTTGTTATTT 59.122 36.000 13.86 0.00 37.70 1.40
3697 3766 4.624336 TCTCGAGAGAAACATCAGTAGC 57.376 45.455 12.08 0.00 41.32 3.58
3709 3778 3.119919 GGCTAACGTCTTTTCTCGAGAGA 60.120 47.826 15.94 8.62 39.12 3.10
3710 3779 3.172824 GGCTAACGTCTTTTCTCGAGAG 58.827 50.000 15.94 4.43 0.00 3.20
3712 3781 2.260481 GGGCTAACGTCTTTTCTCGAG 58.740 52.381 5.93 5.93 0.00 4.04
3714 3783 0.989890 CGGGCTAACGTCTTTTCTCG 59.010 55.000 0.00 0.00 0.00 4.04
3725 3795 7.148205 TGGTTTTATTTATGAAGTCGGGCTAAC 60.148 37.037 0.00 0.00 0.00 2.34
3748 3818 2.034066 CGTGGGATGCCTGTTGGT 59.966 61.111 4.35 0.00 35.27 3.67
3774 3862 5.140454 ACTTTGCTTTGTATCCTCACCTTT 58.860 37.500 0.00 0.00 0.00 3.11
3777 3865 6.374333 TCATTACTTTGCTTTGTATCCTCACC 59.626 38.462 0.00 0.00 0.00 4.02
3874 3962 0.901827 TGGCTGCCTTCGTCTCATTA 59.098 50.000 21.03 0.00 0.00 1.90
3894 3982 2.283529 GGGTTGTGGCTCTCCTCGA 61.284 63.158 0.00 0.00 0.00 4.04
3944 4032 2.631418 ACCACGACGTCTTCACTATG 57.369 50.000 14.70 0.00 0.00 2.23
3949 4037 0.599060 TGCATACCACGACGTCTTCA 59.401 50.000 14.70 0.00 0.00 3.02
3996 4084 1.448013 GTGCGACAAGGAGCCTACC 60.448 63.158 0.00 0.00 0.00 3.18
4023 4111 4.082026 CCTTTGTGGTTTGGGAGATCATTC 60.082 45.833 0.00 0.00 0.00 2.67
4042 4130 1.144913 TGTGCAGGCCTAAGAACCTTT 59.855 47.619 3.98 0.00 32.56 3.11
4054 4142 4.660789 AAATGGAAGATTATGTGCAGGC 57.339 40.909 0.00 0.00 0.00 4.85
4083 4171 4.994852 CACGGAGAACAAGAAGAAATACCA 59.005 41.667 0.00 0.00 0.00 3.25
4106 4194 4.814771 CGTAGTGGTTTCCATAGGAATTCC 59.185 45.833 17.31 17.31 41.71 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.