Multiple sequence alignment - TraesCS4B01G112000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G112000 chr4B 100.000 2763 0 0 1 2763 125480409 125483171 0.000000e+00 5103.0
1 TraesCS4B01G112000 chr4A 92.325 1342 52 16 611 1921 501468081 501469402 0.000000e+00 1860.0
2 TraesCS4B01G112000 chr4A 86.857 350 27 10 2416 2763 501470203 501470535 9.340000e-100 374.0
3 TraesCS4B01G112000 chr4A 91.915 235 13 4 2198 2429 501469681 501469912 9.540000e-85 324.0
4 TraesCS4B01G112000 chr4A 82.297 209 31 6 2 208 689448430 689448634 2.830000e-40 176.0
5 TraesCS4B01G112000 chr4A 92.647 68 5 0 546 613 501458108 501458175 6.300000e-17 99.0
6 TraesCS4B01G112000 chr4D 93.364 1085 37 20 840 1912 88700383 88701444 0.000000e+00 1572.0
7 TraesCS4B01G112000 chr4D 92.000 575 28 10 2202 2763 88703374 88703943 0.000000e+00 791.0
8 TraesCS4B01G112000 chr4D 92.553 188 11 2 1989 2173 88703200 88703387 1.630000e-67 267.0
9 TraesCS4B01G112000 chr2D 87.500 80 10 0 1233 1312 382196107 382196186 2.930000e-15 93.5
10 TraesCS4B01G112000 chr2D 100.000 28 0 0 1933 1960 644547446 644547419 5.000000e-03 52.8
11 TraesCS4B01G112000 chr2B 87.500 80 10 0 1233 1312 453078525 453078604 2.930000e-15 93.5
12 TraesCS4B01G112000 chr2B 78.873 142 20 7 389 526 743581716 743581851 1.360000e-13 87.9
13 TraesCS4B01G112000 chr2B 100.000 29 0 0 1931 1959 315555559 315555587 1.000000e-03 54.7
14 TraesCS4B01G112000 chr2A 87.500 80 10 0 1233 1312 516532384 516532463 2.930000e-15 93.5
15 TraesCS4B01G112000 chr6A 81.250 112 20 1 13 124 21700458 21700568 3.790000e-14 89.8
16 TraesCS4B01G112000 chr6A 95.238 42 2 0 389 430 577014539 577014498 1.780000e-07 67.6
17 TraesCS4B01G112000 chr5B 88.235 68 7 1 393 460 437927094 437927028 2.280000e-11 80.5
18 TraesCS4B01G112000 chr5A 100.000 29 0 0 1931 1959 467062955 467062927 1.000000e-03 54.7
19 TraesCS4B01G112000 chr3A 100.000 29 0 0 1931 1959 714534212 714534240 1.000000e-03 54.7
20 TraesCS4B01G112000 chr3A 94.286 35 1 1 1925 1959 25934807 25934774 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G112000 chr4B 125480409 125483171 2762 False 5103.000000 5103 100.000000 1 2763 1 chr4B.!!$F1 2762
1 TraesCS4B01G112000 chr4A 501468081 501470535 2454 False 852.666667 1860 90.365667 611 2763 3 chr4A.!!$F3 2152
2 TraesCS4B01G112000 chr4D 88700383 88703943 3560 False 876.666667 1572 92.639000 840 2763 3 chr4D.!!$F1 1923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 0.108615 CCCTTCTCCGCACACACTAG 60.109 60.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 1988 0.380378 GCAACCACGTGACACATGTT 59.62 50.0 19.3 8.51 30.47 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.796495 CCTACAAGGCCGCCACCC 62.796 72.222 13.15 0.00 0.00 4.61
23 24 4.028490 CTACAAGGCCGCCACCCA 62.028 66.667 13.15 0.00 0.00 4.51
24 25 3.976701 CTACAAGGCCGCCACCCAG 62.977 68.421 13.15 0.00 0.00 4.45
31 32 4.864334 CCGCCACCCAGCAGATCC 62.864 72.222 0.00 0.00 0.00 3.36
35 36 4.457496 CACCCAGCAGATCCGCGT 62.457 66.667 4.92 0.00 36.85 6.01
36 37 3.706373 ACCCAGCAGATCCGCGTT 61.706 61.111 4.92 0.00 36.85 4.84
37 38 3.197790 CCCAGCAGATCCGCGTTG 61.198 66.667 4.92 0.00 36.85 4.10
38 39 3.197790 CCAGCAGATCCGCGTTGG 61.198 66.667 4.92 0.00 36.85 3.77
39 40 3.197790 CAGCAGATCCGCGTTGGG 61.198 66.667 4.92 0.00 38.76 4.12
40 41 4.473520 AGCAGATCCGCGTTGGGG 62.474 66.667 4.92 0.00 38.76 4.96
85 86 3.414700 GCACACTGCGGAACCTCG 61.415 66.667 0.00 0.00 31.71 4.63
95 96 4.821589 GAACCTCGCCGGGAGCAG 62.822 72.222 2.18 0.00 44.04 4.24
106 107 4.471726 GGAGCAGCGCATGTGCAC 62.472 66.667 31.29 22.46 43.82 4.57
107 108 4.471726 GAGCAGCGCATGTGCACC 62.472 66.667 31.29 20.92 43.82 5.01
110 111 4.746951 CAGCGCATGTGCACCACG 62.747 66.667 31.29 15.98 42.21 4.94
121 122 3.279116 CACCACGCACACCCACTG 61.279 66.667 0.00 0.00 0.00 3.66
124 125 4.935495 CACGCACACCCACTGCCT 62.935 66.667 0.00 0.00 0.00 4.75
125 126 3.238497 ACGCACACCCACTGCCTA 61.238 61.111 0.00 0.00 0.00 3.93
126 127 2.434884 CGCACACCCACTGCCTAG 60.435 66.667 0.00 0.00 0.00 3.02
127 128 2.747855 GCACACCCACTGCCTAGC 60.748 66.667 0.00 0.00 0.00 3.42
128 129 2.045926 CACACCCACTGCCTAGCC 60.046 66.667 0.00 0.00 0.00 3.93
129 130 2.203998 ACACCCACTGCCTAGCCT 60.204 61.111 0.00 0.00 0.00 4.58
130 131 2.270205 CACCCACTGCCTAGCCTG 59.730 66.667 0.00 0.00 0.00 4.85
131 132 3.011517 ACCCACTGCCTAGCCTGG 61.012 66.667 0.00 0.00 0.00 4.45
132 133 3.801997 CCCACTGCCTAGCCTGGG 61.802 72.222 5.32 5.32 38.57 4.45
138 139 2.755876 GCCTAGCCTGGGCCAAAC 60.756 66.667 8.09 1.84 43.49 2.93
139 140 2.043953 CCTAGCCTGGGCCAAACC 60.044 66.667 8.04 0.00 43.17 3.27
140 141 2.438434 CTAGCCTGGGCCAAACCG 60.438 66.667 8.04 0.00 43.17 4.44
141 142 4.733542 TAGCCTGGGCCAAACCGC 62.734 66.667 8.04 7.08 43.17 5.68
144 145 3.451894 CCTGGGCCAAACCGCATC 61.452 66.667 8.04 0.00 40.62 3.91
145 146 3.814268 CTGGGCCAAACCGCATCG 61.814 66.667 8.04 0.00 40.62 3.84
166 167 4.838486 CGTCGCGTCTCTGGCCTC 62.838 72.222 5.77 0.00 0.00 4.70
167 168 3.444805 GTCGCGTCTCTGGCCTCT 61.445 66.667 5.77 0.00 0.00 3.69
168 169 3.443925 TCGCGTCTCTGGCCTCTG 61.444 66.667 5.77 0.00 0.00 3.35
194 195 4.487412 CGTCCTACCGCGACCACC 62.487 72.222 8.23 0.00 0.00 4.61
195 196 3.376078 GTCCTACCGCGACCACCA 61.376 66.667 8.23 0.00 0.00 4.17
196 197 3.066190 TCCTACCGCGACCACCAG 61.066 66.667 8.23 0.00 0.00 4.00
197 198 3.379445 CCTACCGCGACCACCAGT 61.379 66.667 8.23 0.00 0.00 4.00
198 199 2.126071 CTACCGCGACCACCAGTG 60.126 66.667 8.23 0.00 0.00 3.66
199 200 4.367023 TACCGCGACCACCAGTGC 62.367 66.667 8.23 0.00 0.00 4.40
258 259 3.195698 GACGCCGCACATCCCTTC 61.196 66.667 0.00 0.00 0.00 3.46
259 260 3.665675 GACGCCGCACATCCCTTCT 62.666 63.158 0.00 0.00 0.00 2.85
260 261 2.892425 CGCCGCACATCCCTTCTC 60.892 66.667 0.00 0.00 0.00 2.87
261 262 2.514824 GCCGCACATCCCTTCTCC 60.515 66.667 0.00 0.00 0.00 3.71
262 263 2.202932 CCGCACATCCCTTCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
263 264 2.892425 CGCACATCCCTTCTCCGC 60.892 66.667 0.00 0.00 0.00 5.54
264 265 2.268920 GCACATCCCTTCTCCGCA 59.731 61.111 0.00 0.00 0.00 5.69
265 266 2.109126 GCACATCCCTTCTCCGCAC 61.109 63.158 0.00 0.00 0.00 5.34
266 267 1.296392 CACATCCCTTCTCCGCACA 59.704 57.895 0.00 0.00 0.00 4.57
267 268 1.021390 CACATCCCTTCTCCGCACAC 61.021 60.000 0.00 0.00 0.00 3.82
268 269 1.296392 CATCCCTTCTCCGCACACA 59.704 57.895 0.00 0.00 0.00 3.72
269 270 1.021390 CATCCCTTCTCCGCACACAC 61.021 60.000 0.00 0.00 0.00 3.82
270 271 1.194781 ATCCCTTCTCCGCACACACT 61.195 55.000 0.00 0.00 0.00 3.55
271 272 0.541063 TCCCTTCTCCGCACACACTA 60.541 55.000 0.00 0.00 0.00 2.74
272 273 0.108615 CCCTTCTCCGCACACACTAG 60.109 60.000 0.00 0.00 0.00 2.57
273 274 0.888619 CCTTCTCCGCACACACTAGA 59.111 55.000 0.00 0.00 0.00 2.43
274 275 1.402984 CCTTCTCCGCACACACTAGAC 60.403 57.143 0.00 0.00 0.00 2.59
275 276 0.601558 TTCTCCGCACACACTAGACC 59.398 55.000 0.00 0.00 0.00 3.85
276 277 0.538746 TCTCCGCACACACTAGACCA 60.539 55.000 0.00 0.00 0.00 4.02
277 278 0.532573 CTCCGCACACACTAGACCAT 59.467 55.000 0.00 0.00 0.00 3.55
278 279 0.246360 TCCGCACACACTAGACCATG 59.754 55.000 0.00 0.00 0.00 3.66
279 280 1.361668 CCGCACACACTAGACCATGC 61.362 60.000 0.00 0.10 0.00 4.06
280 281 2.081526 GCACACACTAGACCATGCG 58.918 57.895 0.00 0.00 0.00 4.73
281 282 1.970917 GCACACACTAGACCATGCGC 61.971 60.000 0.00 0.00 0.00 6.09
282 283 1.079127 ACACACTAGACCATGCGCC 60.079 57.895 4.18 0.00 0.00 6.53
283 284 1.815421 CACACTAGACCATGCGCCC 60.815 63.158 4.18 0.00 0.00 6.13
284 285 2.586079 CACTAGACCATGCGCCCG 60.586 66.667 4.18 0.00 0.00 6.13
285 286 3.075005 ACTAGACCATGCGCCCGT 61.075 61.111 4.18 0.00 0.00 5.28
286 287 2.279517 CTAGACCATGCGCCCGTC 60.280 66.667 4.18 7.78 0.00 4.79
287 288 4.201679 TAGACCATGCGCCCGTCG 62.202 66.667 4.18 0.00 42.12 5.12
342 343 4.504916 CACGCCTCTCCTCCGCTG 62.505 72.222 0.00 0.00 0.00 5.18
343 344 4.742649 ACGCCTCTCCTCCGCTGA 62.743 66.667 0.00 0.00 0.00 4.26
344 345 3.898509 CGCCTCTCCTCCGCTGAG 61.899 72.222 0.00 0.00 38.42 3.35
345 346 4.219999 GCCTCTCCTCCGCTGAGC 62.220 72.222 0.00 0.00 37.29 4.26
374 375 4.785453 GCCCAGACCTTGCGGGAG 62.785 72.222 0.00 0.00 43.21 4.30
375 376 4.101448 CCCAGACCTTGCGGGAGG 62.101 72.222 2.42 0.90 43.21 4.30
376 377 4.101448 CCAGACCTTGCGGGAGGG 62.101 72.222 0.00 0.00 41.31 4.30
377 378 3.003173 CAGACCTTGCGGGAGGGA 61.003 66.667 4.29 0.00 41.31 4.20
378 379 2.203938 AGACCTTGCGGGAGGGAA 60.204 61.111 4.29 0.00 41.31 3.97
379 380 1.846124 AGACCTTGCGGGAGGGAAA 60.846 57.895 4.29 0.00 41.31 3.13
380 381 1.074248 GACCTTGCGGGAGGGAAAA 59.926 57.895 4.29 0.00 41.31 2.29
381 382 0.538746 GACCTTGCGGGAGGGAAAAA 60.539 55.000 4.29 0.00 41.31 1.94
398 399 0.601057 AAAAATTGAAGACCCCGCCG 59.399 50.000 0.00 0.00 0.00 6.46
399 400 1.873270 AAAATTGAAGACCCCGCCGC 61.873 55.000 0.00 0.00 0.00 6.53
400 401 4.796495 ATTGAAGACCCCGCCGCC 62.796 66.667 0.00 0.00 0.00 6.13
434 435 2.978010 CTTTGCCCGACGGTGCTT 60.978 61.111 22.38 0.00 0.00 3.91
435 436 3.254014 CTTTGCCCGACGGTGCTTG 62.254 63.158 22.38 11.99 0.00 4.01
460 461 4.924187 CGGCGAGGGGAGAGGGAT 62.924 72.222 0.00 0.00 0.00 3.85
461 462 3.237741 GGCGAGGGGAGAGGGATG 61.238 72.222 0.00 0.00 0.00 3.51
462 463 2.444895 GCGAGGGGAGAGGGATGT 60.445 66.667 0.00 0.00 0.00 3.06
463 464 2.503382 GCGAGGGGAGAGGGATGTC 61.503 68.421 0.00 0.00 0.00 3.06
464 465 2.196925 CGAGGGGAGAGGGATGTCG 61.197 68.421 0.00 0.00 0.00 4.35
465 466 1.834822 GAGGGGAGAGGGATGTCGG 60.835 68.421 0.00 0.00 0.00 4.79
466 467 2.844839 GGGGAGAGGGATGTCGGG 60.845 72.222 0.00 0.00 0.00 5.14
467 468 2.844839 GGGAGAGGGATGTCGGGG 60.845 72.222 0.00 0.00 0.00 5.73
468 469 2.282446 GGAGAGGGATGTCGGGGA 59.718 66.667 0.00 0.00 0.00 4.81
469 470 1.834822 GGAGAGGGATGTCGGGGAG 60.835 68.421 0.00 0.00 0.00 4.30
470 471 1.834822 GAGAGGGATGTCGGGGAGG 60.835 68.421 0.00 0.00 0.00 4.30
471 472 2.844839 GAGGGATGTCGGGGAGGG 60.845 72.222 0.00 0.00 0.00 4.30
472 473 4.499116 AGGGATGTCGGGGAGGGG 62.499 72.222 0.00 0.00 0.00 4.79
474 475 4.492303 GGATGTCGGGGAGGGGGA 62.492 72.222 0.00 0.00 0.00 4.81
475 476 2.844839 GATGTCGGGGAGGGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
476 477 3.695825 ATGTCGGGGAGGGGGAGT 61.696 66.667 0.00 0.00 0.00 3.85
477 478 3.268647 ATGTCGGGGAGGGGGAGTT 62.269 63.158 0.00 0.00 0.00 3.01
478 479 3.082055 GTCGGGGAGGGGGAGTTC 61.082 72.222 0.00 0.00 0.00 3.01
479 480 3.281787 TCGGGGAGGGGGAGTTCT 61.282 66.667 0.00 0.00 0.00 3.01
480 481 2.285442 CGGGGAGGGGGAGTTCTT 60.285 66.667 0.00 0.00 0.00 2.52
481 482 2.368011 CGGGGAGGGGGAGTTCTTC 61.368 68.421 0.00 0.00 0.00 2.87
482 483 1.083141 GGGGAGGGGGAGTTCTTCT 59.917 63.158 0.00 0.00 0.00 2.85
483 484 1.275421 GGGGAGGGGGAGTTCTTCTG 61.275 65.000 0.00 0.00 0.00 3.02
484 485 1.275421 GGGAGGGGGAGTTCTTCTGG 61.275 65.000 0.00 0.00 0.00 3.86
485 486 1.604915 GAGGGGGAGTTCTTCTGGC 59.395 63.158 0.00 0.00 0.00 4.85
486 487 2.245438 GAGGGGGAGTTCTTCTGGCG 62.245 65.000 0.00 0.00 0.00 5.69
487 488 2.269241 GGGGAGTTCTTCTGGCGG 59.731 66.667 0.00 0.00 0.00 6.13
488 489 2.436824 GGGAGTTCTTCTGGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
489 490 2.665603 GGAGTTCTTCTGGCGGCT 59.334 61.111 11.43 0.00 0.00 5.52
490 491 1.614241 GGGAGTTCTTCTGGCGGCTA 61.614 60.000 11.43 0.00 0.00 3.93
491 492 0.179097 GGAGTTCTTCTGGCGGCTAG 60.179 60.000 11.43 7.07 0.00 3.42
492 493 0.179097 GAGTTCTTCTGGCGGCTAGG 60.179 60.000 13.65 0.00 0.00 3.02
493 494 1.153349 GTTCTTCTGGCGGCTAGGG 60.153 63.158 13.65 7.14 0.00 3.53
494 495 1.612442 TTCTTCTGGCGGCTAGGGT 60.612 57.895 13.65 0.00 0.00 4.34
495 496 1.198759 TTCTTCTGGCGGCTAGGGTT 61.199 55.000 13.65 0.00 0.00 4.11
496 497 1.198759 TCTTCTGGCGGCTAGGGTTT 61.199 55.000 13.65 0.00 0.00 3.27
497 498 0.744771 CTTCTGGCGGCTAGGGTTTC 60.745 60.000 13.65 0.00 0.00 2.78
498 499 2.511600 CTGGCGGCTAGGGTTTCG 60.512 66.667 11.43 0.00 0.00 3.46
499 500 3.310860 CTGGCGGCTAGGGTTTCGT 62.311 63.158 11.43 0.00 0.00 3.85
500 501 2.510918 GGCGGCTAGGGTTTCGTC 60.511 66.667 0.00 0.00 0.00 4.20
501 502 2.510918 GCGGCTAGGGTTTCGTCC 60.511 66.667 0.00 0.00 0.00 4.79
502 503 2.202703 CGGCTAGGGTTTCGTCCG 60.203 66.667 0.00 0.00 0.00 4.79
503 504 2.186125 GGCTAGGGTTTCGTCCGG 59.814 66.667 0.00 0.00 0.00 5.14
504 505 2.186125 GCTAGGGTTTCGTCCGGG 59.814 66.667 0.00 0.00 0.00 5.73
505 506 2.653087 GCTAGGGTTTCGTCCGGGT 61.653 63.158 0.00 0.00 0.00 5.28
506 507 1.514553 CTAGGGTTTCGTCCGGGTC 59.485 63.158 0.00 0.00 0.00 4.46
507 508 2.275547 CTAGGGTTTCGTCCGGGTCG 62.276 65.000 0.00 7.37 0.00 4.79
508 509 2.762969 TAGGGTTTCGTCCGGGTCGA 62.763 60.000 12.26 12.26 35.50 4.20
509 510 2.431430 GGTTTCGTCCGGGTCGAC 60.431 66.667 15.71 7.13 37.05 4.20
510 511 2.431430 GTTTCGTCCGGGTCGACC 60.431 66.667 27.04 27.04 37.05 4.79
530 531 3.998672 GGGGGACAACACGAGCGA 61.999 66.667 0.00 0.00 0.00 4.93
531 532 2.264794 GGGGACAACACGAGCGAT 59.735 61.111 0.00 0.00 0.00 4.58
532 533 2.100631 GGGGACAACACGAGCGATG 61.101 63.158 0.00 0.00 0.00 3.84
533 534 1.374252 GGGACAACACGAGCGATGT 60.374 57.895 0.00 0.00 0.00 3.06
534 535 1.626654 GGGACAACACGAGCGATGTG 61.627 60.000 0.00 4.75 42.99 3.21
541 542 2.661504 CACGAGCGATGTGTTTTCAA 57.338 45.000 0.00 0.00 32.68 2.69
542 543 2.298300 CACGAGCGATGTGTTTTCAAC 58.702 47.619 0.00 0.00 32.68 3.18
543 544 1.937223 ACGAGCGATGTGTTTTCAACA 59.063 42.857 0.00 0.00 39.52 3.33
557 558 6.644347 TGTTTTCAACACACCCAAATAATGT 58.356 32.000 0.00 0.00 36.25 2.71
558 559 7.106239 TGTTTTCAACACACCCAAATAATGTT 58.894 30.769 0.00 0.00 36.25 2.71
559 560 7.607991 TGTTTTCAACACACCCAAATAATGTTT 59.392 29.630 0.00 0.00 36.25 2.83
560 561 8.454894 GTTTTCAACACACCCAAATAATGTTTT 58.545 29.630 0.00 0.00 31.25 2.43
561 562 7.778470 TTCAACACACCCAAATAATGTTTTC 57.222 32.000 0.00 0.00 31.25 2.29
562 563 6.878317 TCAACACACCCAAATAATGTTTTCA 58.122 32.000 0.00 0.00 31.25 2.69
563 564 6.983307 TCAACACACCCAAATAATGTTTTCAG 59.017 34.615 0.00 0.00 31.25 3.02
564 565 6.723298 ACACACCCAAATAATGTTTTCAGA 57.277 33.333 0.00 0.00 0.00 3.27
565 566 6.512297 ACACACCCAAATAATGTTTTCAGAC 58.488 36.000 0.00 0.00 0.00 3.51
566 567 5.629020 CACACCCAAATAATGTTTTCAGACG 59.371 40.000 0.00 0.00 0.00 4.18
567 568 5.533154 ACACCCAAATAATGTTTTCAGACGA 59.467 36.000 0.00 0.00 0.00 4.20
568 569 6.208599 ACACCCAAATAATGTTTTCAGACGAT 59.791 34.615 0.00 0.00 0.00 3.73
569 570 7.090173 CACCCAAATAATGTTTTCAGACGATT 58.910 34.615 0.00 0.00 0.00 3.34
570 571 7.062138 CACCCAAATAATGTTTTCAGACGATTG 59.938 37.037 0.00 0.00 0.00 2.67
571 572 7.040062 ACCCAAATAATGTTTTCAGACGATTGA 60.040 33.333 0.00 0.00 0.00 2.57
572 573 7.273381 CCCAAATAATGTTTTCAGACGATTGAC 59.727 37.037 0.00 0.00 0.00 3.18
573 574 7.273381 CCAAATAATGTTTTCAGACGATTGACC 59.727 37.037 0.00 0.00 0.00 4.02
574 575 7.687941 AATAATGTTTTCAGACGATTGACCT 57.312 32.000 0.00 0.00 0.00 3.85
575 576 5.362556 AATGTTTTCAGACGATTGACCTG 57.637 39.130 0.00 0.00 0.00 4.00
576 577 2.548057 TGTTTTCAGACGATTGACCTGC 59.452 45.455 0.00 0.00 0.00 4.85
577 578 2.542020 TTTCAGACGATTGACCTGCA 57.458 45.000 0.00 0.00 0.00 4.41
578 579 2.084610 TTCAGACGATTGACCTGCAG 57.915 50.000 6.78 6.78 0.00 4.41
579 580 0.390340 TCAGACGATTGACCTGCAGC 60.390 55.000 8.66 0.00 0.00 5.25
580 581 0.390866 CAGACGATTGACCTGCAGCT 60.391 55.000 8.66 0.00 0.00 4.24
581 582 1.134995 CAGACGATTGACCTGCAGCTA 60.135 52.381 8.66 0.00 0.00 3.32
582 583 1.759445 AGACGATTGACCTGCAGCTAT 59.241 47.619 8.66 0.00 0.00 2.97
583 584 2.169352 AGACGATTGACCTGCAGCTATT 59.831 45.455 8.66 0.00 0.00 1.73
584 585 2.283298 ACGATTGACCTGCAGCTATTG 58.717 47.619 8.66 4.95 0.00 1.90
585 586 2.283298 CGATTGACCTGCAGCTATTGT 58.717 47.619 8.66 0.00 0.00 2.71
586 587 2.031314 CGATTGACCTGCAGCTATTGTG 59.969 50.000 8.66 0.00 0.00 3.33
587 588 2.566833 TTGACCTGCAGCTATTGTGT 57.433 45.000 8.66 0.00 0.00 3.72
588 589 2.566833 TGACCTGCAGCTATTGTGTT 57.433 45.000 8.66 0.00 0.00 3.32
589 590 2.862541 TGACCTGCAGCTATTGTGTTT 58.137 42.857 8.66 0.00 0.00 2.83
590 591 3.221771 TGACCTGCAGCTATTGTGTTTT 58.778 40.909 8.66 0.00 0.00 2.43
591 592 3.253188 TGACCTGCAGCTATTGTGTTTTC 59.747 43.478 8.66 0.00 0.00 2.29
592 593 3.221771 ACCTGCAGCTATTGTGTTTTCA 58.778 40.909 8.66 0.00 0.00 2.69
593 594 3.254166 ACCTGCAGCTATTGTGTTTTCAG 59.746 43.478 8.66 0.00 0.00 3.02
594 595 3.254166 CCTGCAGCTATTGTGTTTTCAGT 59.746 43.478 8.66 0.00 0.00 3.41
595 596 4.455533 CCTGCAGCTATTGTGTTTTCAGTA 59.544 41.667 8.66 0.00 0.00 2.74
596 597 5.048782 CCTGCAGCTATTGTGTTTTCAGTAA 60.049 40.000 8.66 0.00 0.00 2.24
597 598 6.349611 CCTGCAGCTATTGTGTTTTCAGTAAT 60.350 38.462 8.66 0.00 0.00 1.89
598 599 7.148255 CCTGCAGCTATTGTGTTTTCAGTAATA 60.148 37.037 8.66 0.00 0.00 0.98
599 600 7.526608 TGCAGCTATTGTGTTTTCAGTAATAC 58.473 34.615 0.00 0.00 0.00 1.89
600 601 7.390440 TGCAGCTATTGTGTTTTCAGTAATACT 59.610 33.333 0.00 0.00 0.00 2.12
602 603 7.693951 CAGCTATTGTGTTTTCAGTAATACTGC 59.306 37.037 15.17 2.55 45.54 4.40
603 604 6.682863 GCTATTGTGTTTTCAGTAATACTGCG 59.317 38.462 15.17 0.00 45.54 5.18
604 605 4.398549 TGTGTTTTCAGTAATACTGCGC 57.601 40.909 15.17 0.00 45.54 6.09
605 606 3.810386 TGTGTTTTCAGTAATACTGCGCA 59.190 39.130 15.17 10.98 45.54 6.09
606 607 4.148891 GTGTTTTCAGTAATACTGCGCAC 58.851 43.478 15.17 14.96 45.54 5.34
607 608 3.810386 TGTTTTCAGTAATACTGCGCACA 59.190 39.130 15.17 13.10 45.54 4.57
608 609 4.148891 GTTTTCAGTAATACTGCGCACAC 58.851 43.478 15.17 0.00 45.54 3.82
609 610 1.624487 TCAGTAATACTGCGCACACG 58.376 50.000 15.17 0.00 45.54 4.49
613 614 3.001070 CAGTAATACTGCGCACACGTAAG 60.001 47.826 5.66 0.00 39.62 2.34
646 647 1.278985 CAGGTTGCTGGATAGTGGACA 59.721 52.381 0.00 0.00 0.00 4.02
649 650 0.249120 TTGCTGGATAGTGGACACGG 59.751 55.000 0.00 0.00 36.20 4.94
658 659 3.625897 TGGACACGGTGAGCAGGG 61.626 66.667 16.29 0.00 0.00 4.45
691 692 0.882042 CTGCCATATCACCGTCAGCC 60.882 60.000 0.00 0.00 0.00 4.85
717 718 3.247442 CGTGTATGCCGACACTTTTCTA 58.753 45.455 14.27 0.00 46.24 2.10
744 745 4.901197 TTGTTACTCACATGGGAGCTAA 57.099 40.909 25.15 17.86 38.50 3.09
806 807 1.308069 GCTGCACCGTTGTCCATCAT 61.308 55.000 0.00 0.00 0.00 2.45
876 899 3.616219 TGGGTAGACCACAATTGTATGC 58.384 45.455 11.53 3.29 46.80 3.14
945 969 2.027469 GGTTAGTTCCACCGTCCATTCT 60.027 50.000 0.00 0.00 0.00 2.40
946 970 3.196254 GGTTAGTTCCACCGTCCATTCTA 59.804 47.826 0.00 0.00 0.00 2.10
947 971 4.322953 GGTTAGTTCCACCGTCCATTCTAA 60.323 45.833 0.00 0.00 0.00 2.10
948 972 3.611766 AGTTCCACCGTCCATTCTAAG 57.388 47.619 0.00 0.00 0.00 2.18
949 973 2.904434 AGTTCCACCGTCCATTCTAAGT 59.096 45.455 0.00 0.00 0.00 2.24
950 974 3.326880 AGTTCCACCGTCCATTCTAAGTT 59.673 43.478 0.00 0.00 0.00 2.66
951 975 4.070009 GTTCCACCGTCCATTCTAAGTTT 58.930 43.478 0.00 0.00 0.00 2.66
952 976 3.934068 TCCACCGTCCATTCTAAGTTTC 58.066 45.455 0.00 0.00 0.00 2.78
960 984 6.090898 CCGTCCATTCTAAGTTTCTAACAGTG 59.909 42.308 0.00 0.00 0.00 3.66
992 1024 0.479378 AAAACCCGGGCAGTAGGAAA 59.521 50.000 24.08 0.00 0.00 3.13
1115 1153 1.225983 CACCACCTGTTCCACCACA 59.774 57.895 0.00 0.00 0.00 4.17
1116 1154 0.395036 CACCACCTGTTCCACCACAA 60.395 55.000 0.00 0.00 0.00 3.33
1117 1155 0.106719 ACCACCTGTTCCACCACAAG 60.107 55.000 0.00 0.00 0.00 3.16
1332 1370 5.373222 ACGCTCTCTCTCATCATAACTAGT 58.627 41.667 0.00 0.00 0.00 2.57
1333 1371 5.238432 ACGCTCTCTCTCATCATAACTAGTG 59.762 44.000 0.00 0.00 0.00 2.74
1335 1373 5.767665 GCTCTCTCTCATCATAACTAGTGGA 59.232 44.000 0.00 0.00 0.00 4.02
1336 1374 6.072508 GCTCTCTCTCATCATAACTAGTGGAG 60.073 46.154 0.00 0.00 0.00 3.86
1337 1375 6.905736 TCTCTCTCATCATAACTAGTGGAGT 58.094 40.000 0.00 0.00 41.56 3.85
1338 1376 6.995686 TCTCTCTCATCATAACTAGTGGAGTC 59.004 42.308 0.00 0.00 37.44 3.36
1594 1635 0.456221 CACCACTTCGGCTAGATCGT 59.544 55.000 0.00 0.00 39.03 3.73
1660 1702 4.385447 GCTTACGTTACGTGTGTTCCATAA 59.615 41.667 21.22 2.28 41.39 1.90
1661 1703 5.107530 GCTTACGTTACGTGTGTTCCATAAA 60.108 40.000 21.22 1.53 41.39 1.40
1680 1722 3.071206 TGAGAGAGGCTGGGACGC 61.071 66.667 0.00 0.00 0.00 5.19
1740 1782 3.865830 GCTAAGCTTCCGCGTGCC 61.866 66.667 0.00 0.00 42.32 5.01
1892 1938 1.336795 CGAAACTTTTGTGGCCCATCC 60.337 52.381 0.00 0.00 0.00 3.51
1908 1954 4.690122 CCCATCCATCTCAAAATTTGCTC 58.310 43.478 0.00 0.00 0.00 4.26
1912 1958 7.201974 CCCATCCATCTCAAAATTTGCTCTAAT 60.202 37.037 0.00 0.00 0.00 1.73
1915 1961 9.638176 ATCCATCTCAAAATTTGCTCTAATAGT 57.362 29.630 0.00 0.00 0.00 2.12
1916 1962 8.896744 TCCATCTCAAAATTTGCTCTAATAGTG 58.103 33.333 0.00 0.00 0.00 2.74
1917 1963 8.680903 CCATCTCAAAATTTGCTCTAATAGTGT 58.319 33.333 0.00 0.00 0.00 3.55
1919 1965 8.846943 TCTCAAAATTTGCTCTAATAGTGTCA 57.153 30.769 0.00 0.00 0.00 3.58
1920 1966 9.453572 TCTCAAAATTTGCTCTAATAGTGTCAT 57.546 29.630 0.00 0.00 0.00 3.06
1922 1968 9.844790 TCAAAATTTGCTCTAATAGTGTCATTG 57.155 29.630 0.00 0.00 0.00 2.82
1927 1973 7.744087 TTGCTCTAATAGTGTCATTGTTTGT 57.256 32.000 0.00 0.00 0.00 2.83
1928 1974 8.840833 TTGCTCTAATAGTGTCATTGTTTGTA 57.159 30.769 0.00 0.00 0.00 2.41
1931 1977 8.383619 GCTCTAATAGTGTCATTGTTTGTACTG 58.616 37.037 0.00 0.00 0.00 2.74
1933 1979 8.590204 TCTAATAGTGTCATTGTTTGTACTGGA 58.410 33.333 0.00 0.00 0.00 3.86
1934 1980 9.383519 CTAATAGTGTCATTGTTTGTACTGGAT 57.616 33.333 0.00 0.00 0.00 3.41
1935 1981 8.635765 AATAGTGTCATTGTTTGTACTGGATT 57.364 30.769 0.00 0.00 0.00 3.01
1936 1982 6.317789 AGTGTCATTGTTTGTACTGGATTG 57.682 37.500 0.00 0.00 0.00 2.67
1937 1983 4.917415 GTGTCATTGTTTGTACTGGATTGC 59.083 41.667 0.00 0.00 0.00 3.56
1939 1985 5.301551 TGTCATTGTTTGTACTGGATTGCTT 59.698 36.000 0.00 0.00 0.00 3.91
1940 1986 6.488344 TGTCATTGTTTGTACTGGATTGCTTA 59.512 34.615 0.00 0.00 0.00 3.09
1942 1988 6.488344 TCATTGTTTGTACTGGATTGCTTACA 59.512 34.615 0.00 0.00 0.00 2.41
1945 1991 5.590663 TGTTTGTACTGGATTGCTTACAACA 59.409 36.000 0.00 0.00 38.99 3.33
1946 1992 6.264292 TGTTTGTACTGGATTGCTTACAACAT 59.736 34.615 0.00 0.00 38.99 2.71
1948 1994 5.312895 TGTACTGGATTGCTTACAACATGT 58.687 37.500 0.00 0.00 38.99 3.21
1949 1995 4.771590 ACTGGATTGCTTACAACATGTG 57.228 40.909 0.00 0.00 38.99 3.21
1950 1996 4.144297 ACTGGATTGCTTACAACATGTGT 58.856 39.130 0.00 2.49 44.82 3.72
1951 1997 4.216257 ACTGGATTGCTTACAACATGTGTC 59.784 41.667 0.00 0.00 41.98 3.67
1954 2000 3.600717 TTGCTTACAACATGTGTCACG 57.399 42.857 0.00 0.00 41.98 4.35
1955 2001 2.556257 TGCTTACAACATGTGTCACGT 58.444 42.857 0.00 0.00 41.98 4.49
1957 2003 2.349438 GCTTACAACATGTGTCACGTGG 60.349 50.000 25.31 13.32 41.98 4.94
1960 2006 1.400142 ACAACATGTGTCACGTGGTTG 59.600 47.619 25.31 24.53 39.36 3.77
1962 2008 1.082821 CATGTGTCACGTGGTTGCG 60.083 57.895 17.00 0.00 31.65 4.85
1964 2010 3.645975 GTGTCACGTGGTTGCGGG 61.646 66.667 17.00 0.00 36.47 6.13
1965 2011 3.851128 TGTCACGTGGTTGCGGGA 61.851 61.111 17.00 0.00 42.47 5.14
1966 2012 2.589442 GTCACGTGGTTGCGGGAA 60.589 61.111 17.00 0.00 46.38 3.97
1968 2014 2.590575 CACGTGGTTGCGGGAAGT 60.591 61.111 7.95 0.00 37.48 3.01
1969 2015 1.301087 CACGTGGTTGCGGGAAGTA 60.301 57.895 7.95 0.00 37.48 2.24
1974 3697 3.054878 CGTGGTTGCGGGAAGTATATAC 58.945 50.000 4.60 4.60 0.00 1.47
1987 3710 6.651225 GGGAAGTATATACTTGAGTTCATGCC 59.349 42.308 28.61 19.56 45.84 4.40
2009 3739 4.973663 CCTACAACGAATTTTGTTCCACAC 59.026 41.667 1.04 0.00 40.29 3.82
2035 3765 5.565455 TCTGCTCCCCAAATCAAAAATTT 57.435 34.783 0.00 0.00 0.00 1.82
2056 3786 8.151658 AAATTTATTAATTACACGAGGCGTGCC 61.152 37.037 18.56 1.67 45.34 5.01
2063 3793 2.332654 ACGAGGCGTGCCCAAAATC 61.333 57.895 7.39 0.00 39.18 2.17
2071 3801 2.935238 GCGTGCCCAAAATCTAGAGTCA 60.935 50.000 0.00 0.00 0.00 3.41
2103 3833 0.106894 GTATCCCTCCCCGCAAGAAG 59.893 60.000 0.00 0.00 43.02 2.85
2112 3844 3.496331 TCCCCGCAAGAAGAAAAATCTT 58.504 40.909 0.00 0.00 37.62 2.40
2173 3906 6.096705 TGAAGAGACAAAACAACATGGTGATT 59.903 34.615 19.90 9.51 0.00 2.57
2175 3908 6.877236 AGAGACAAAACAACATGGTGATTTT 58.123 32.000 19.90 16.39 0.00 1.82
2176 3909 7.330262 AGAGACAAAACAACATGGTGATTTTT 58.670 30.769 19.90 11.51 0.00 1.94
2340 4077 7.218145 CAAAGATTGATTGCATAGCACTTTC 57.782 36.000 0.00 0.00 38.71 2.62
2358 4095 6.473521 CACTTTCGCATAAAACAAAGCAAAA 58.526 32.000 0.00 0.00 30.29 2.44
2363 4100 7.239166 TCGCATAAAACAAAGCAAAATTTGA 57.761 28.000 10.26 0.00 41.71 2.69
2402 4140 0.610232 AAGCTTGACAGGGCATCCAC 60.610 55.000 0.00 0.00 34.83 4.02
2524 4566 6.789262 ACATAAACATTCTCTAGCAACATGC 58.211 36.000 0.00 0.00 45.46 4.06
2545 4587 6.867799 TGCGCATAATTCATAAAAACACAG 57.132 33.333 5.66 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.796495 GGGTGGCGGCCTTGTAGG 62.796 72.222 21.46 0.00 38.80 3.18
6 7 3.976701 CTGGGTGGCGGCCTTGTAG 62.977 68.421 21.46 9.75 0.00 2.74
7 8 4.028490 CTGGGTGGCGGCCTTGTA 62.028 66.667 21.46 3.59 0.00 2.41
14 15 4.864334 GGATCTGCTGGGTGGCGG 62.864 72.222 0.00 0.00 39.72 6.13
18 19 4.457496 ACGCGGATCTGCTGGGTG 62.457 66.667 23.71 10.57 46.17 4.61
20 21 3.197790 CAACGCGGATCTGCTGGG 61.198 66.667 23.71 11.30 41.34 4.45
21 22 3.197790 CCAACGCGGATCTGCTGG 61.198 66.667 23.71 20.49 36.56 4.85
22 23 3.197790 CCCAACGCGGATCTGCTG 61.198 66.667 23.71 18.47 36.56 4.41
23 24 4.473520 CCCCAACGCGGATCTGCT 62.474 66.667 23.71 8.65 36.56 4.24
68 69 3.414700 CGAGGTTCCGCAGTGTGC 61.415 66.667 0.00 0.00 40.69 4.57
78 79 4.821589 CTGCTCCCGGCGAGGTTC 62.822 72.222 9.30 5.24 45.43 3.62
104 105 3.279116 CAGTGGGTGTGCGTGGTG 61.279 66.667 0.00 0.00 0.00 4.17
107 108 3.529341 TAGGCAGTGGGTGTGCGTG 62.529 63.158 0.76 0.00 42.19 5.34
108 109 3.238497 TAGGCAGTGGGTGTGCGT 61.238 61.111 0.00 0.00 42.19 5.24
109 110 2.434884 CTAGGCAGTGGGTGTGCG 60.435 66.667 0.00 0.00 42.19 5.34
110 111 2.747855 GCTAGGCAGTGGGTGTGC 60.748 66.667 0.00 0.00 40.42 4.57
111 112 2.045926 GGCTAGGCAGTGGGTGTG 60.046 66.667 12.16 0.00 0.00 3.82
112 113 2.203998 AGGCTAGGCAGTGGGTGT 60.204 61.111 19.70 0.00 0.00 4.16
113 114 2.270205 CAGGCTAGGCAGTGGGTG 59.730 66.667 19.70 2.66 0.00 4.61
114 115 3.011517 CCAGGCTAGGCAGTGGGT 61.012 66.667 19.70 0.00 32.62 4.51
115 116 3.801997 CCCAGGCTAGGCAGTGGG 61.802 72.222 24.00 24.00 44.25 4.61
122 123 2.043953 GGTTTGGCCCAGGCTAGG 60.044 66.667 8.89 0.00 41.60 3.02
123 124 2.438434 CGGTTTGGCCCAGGCTAG 60.438 66.667 8.89 0.00 41.60 3.42
124 125 4.733542 GCGGTTTGGCCCAGGCTA 62.734 66.667 8.89 0.00 41.60 3.93
127 128 3.451894 GATGCGGTTTGGCCCAGG 61.452 66.667 0.00 0.00 0.00 4.45
128 129 3.814268 CGATGCGGTTTGGCCCAG 61.814 66.667 0.00 0.00 0.00 4.45
149 150 4.838486 GAGGCCAGAGACGCGACG 62.838 72.222 15.93 0.00 0.00 5.12
150 151 3.444805 AGAGGCCAGAGACGCGAC 61.445 66.667 15.93 6.86 0.00 5.19
151 152 3.443925 CAGAGGCCAGAGACGCGA 61.444 66.667 15.93 0.00 0.00 5.87
177 178 4.487412 GGTGGTCGCGGTAGGACG 62.487 72.222 6.13 0.00 35.24 4.79
178 179 3.352338 CTGGTGGTCGCGGTAGGAC 62.352 68.421 6.13 0.00 0.00 3.85
179 180 3.066190 CTGGTGGTCGCGGTAGGA 61.066 66.667 6.13 0.00 0.00 2.94
180 181 3.379445 ACTGGTGGTCGCGGTAGG 61.379 66.667 6.13 0.00 0.00 3.18
181 182 2.126071 CACTGGTGGTCGCGGTAG 60.126 66.667 6.13 0.00 0.00 3.18
182 183 4.367023 GCACTGGTGGTCGCGGTA 62.367 66.667 6.13 0.00 0.00 4.02
241 242 3.195698 GAAGGGATGTGCGGCGTC 61.196 66.667 9.37 0.91 0.00 5.19
242 243 3.665675 GAGAAGGGATGTGCGGCGT 62.666 63.158 9.37 0.00 0.00 5.68
243 244 2.892425 GAGAAGGGATGTGCGGCG 60.892 66.667 0.51 0.51 0.00 6.46
244 245 2.514824 GGAGAAGGGATGTGCGGC 60.515 66.667 0.00 0.00 0.00 6.53
245 246 2.202932 CGGAGAAGGGATGTGCGG 60.203 66.667 0.00 0.00 32.29 5.69
246 247 2.892425 GCGGAGAAGGGATGTGCG 60.892 66.667 0.00 0.00 39.23 5.34
247 248 2.109126 GTGCGGAGAAGGGATGTGC 61.109 63.158 0.00 0.00 0.00 4.57
248 249 1.021390 GTGTGCGGAGAAGGGATGTG 61.021 60.000 0.00 0.00 0.00 3.21
249 250 1.296715 GTGTGCGGAGAAGGGATGT 59.703 57.895 0.00 0.00 0.00 3.06
250 251 1.021390 GTGTGTGCGGAGAAGGGATG 61.021 60.000 0.00 0.00 0.00 3.51
251 252 1.194781 AGTGTGTGCGGAGAAGGGAT 61.195 55.000 0.00 0.00 0.00 3.85
252 253 0.541063 TAGTGTGTGCGGAGAAGGGA 60.541 55.000 0.00 0.00 0.00 4.20
253 254 0.108615 CTAGTGTGTGCGGAGAAGGG 60.109 60.000 0.00 0.00 0.00 3.95
254 255 0.888619 TCTAGTGTGTGCGGAGAAGG 59.111 55.000 0.00 0.00 0.00 3.46
255 256 1.402984 GGTCTAGTGTGTGCGGAGAAG 60.403 57.143 0.00 0.00 0.00 2.85
256 257 0.601558 GGTCTAGTGTGTGCGGAGAA 59.398 55.000 0.00 0.00 0.00 2.87
257 258 0.538746 TGGTCTAGTGTGTGCGGAGA 60.539 55.000 0.00 0.00 0.00 3.71
258 259 0.532573 ATGGTCTAGTGTGTGCGGAG 59.467 55.000 0.00 0.00 0.00 4.63
259 260 0.246360 CATGGTCTAGTGTGTGCGGA 59.754 55.000 0.00 0.00 0.00 5.54
260 261 1.361668 GCATGGTCTAGTGTGTGCGG 61.362 60.000 0.00 0.00 0.00 5.69
261 262 2.081526 GCATGGTCTAGTGTGTGCG 58.918 57.895 0.00 0.00 0.00 5.34
262 263 1.970917 GCGCATGGTCTAGTGTGTGC 61.971 60.000 0.30 8.37 40.32 4.57
263 264 1.361668 GGCGCATGGTCTAGTGTGTG 61.362 60.000 10.83 0.00 0.00 3.82
264 265 1.079127 GGCGCATGGTCTAGTGTGT 60.079 57.895 10.83 0.00 0.00 3.72
265 266 1.815421 GGGCGCATGGTCTAGTGTG 60.815 63.158 10.83 0.00 0.00 3.82
266 267 2.584608 GGGCGCATGGTCTAGTGT 59.415 61.111 10.83 0.00 0.00 3.55
267 268 2.586079 CGGGCGCATGGTCTAGTG 60.586 66.667 10.83 0.00 0.00 2.74
268 269 3.075005 ACGGGCGCATGGTCTAGT 61.075 61.111 10.83 0.00 0.00 2.57
269 270 2.279517 GACGGGCGCATGGTCTAG 60.280 66.667 10.83 0.00 0.00 2.43
270 271 4.201679 CGACGGGCGCATGGTCTA 62.202 66.667 10.83 0.00 0.00 2.59
325 326 4.504916 CAGCGGAGGAGAGGCGTG 62.505 72.222 0.00 0.00 0.00 5.34
326 327 4.742649 TCAGCGGAGGAGAGGCGT 62.743 66.667 0.00 0.00 0.00 5.68
327 328 3.898509 CTCAGCGGAGGAGAGGCG 61.899 72.222 5.89 0.00 37.51 5.52
328 329 4.219999 GCTCAGCGGAGGAGAGGC 62.220 72.222 15.89 0.00 41.67 4.70
379 380 0.601057 CGGCGGGGTCTTCAATTTTT 59.399 50.000 0.00 0.00 0.00 1.94
380 381 1.873270 GCGGCGGGGTCTTCAATTTT 61.873 55.000 9.78 0.00 0.00 1.82
381 382 2.340328 GCGGCGGGGTCTTCAATTT 61.340 57.895 9.78 0.00 0.00 1.82
382 383 2.750237 GCGGCGGGGTCTTCAATT 60.750 61.111 9.78 0.00 0.00 2.32
383 384 4.796495 GGCGGCGGGGTCTTCAAT 62.796 66.667 9.78 0.00 0.00 2.57
417 418 2.978010 AAGCACCGTCGGGCAAAG 60.978 61.111 21.73 6.55 36.48 2.77
418 419 3.283684 CAAGCACCGTCGGGCAAA 61.284 61.111 21.73 0.00 36.48 3.68
443 444 4.924187 ATCCCTCTCCCCTCGCCG 62.924 72.222 0.00 0.00 0.00 6.46
444 445 3.237741 CATCCCTCTCCCCTCGCC 61.238 72.222 0.00 0.00 0.00 5.54
445 446 2.444895 ACATCCCTCTCCCCTCGC 60.445 66.667 0.00 0.00 0.00 5.03
446 447 2.196925 CGACATCCCTCTCCCCTCG 61.197 68.421 0.00 0.00 0.00 4.63
447 448 1.834822 CCGACATCCCTCTCCCCTC 60.835 68.421 0.00 0.00 0.00 4.30
448 449 2.283809 CCGACATCCCTCTCCCCT 59.716 66.667 0.00 0.00 0.00 4.79
449 450 2.844839 CCCGACATCCCTCTCCCC 60.845 72.222 0.00 0.00 0.00 4.81
450 451 2.844839 CCCCGACATCCCTCTCCC 60.845 72.222 0.00 0.00 0.00 4.30
451 452 1.834822 CTCCCCGACATCCCTCTCC 60.835 68.421 0.00 0.00 0.00 3.71
452 453 1.834822 CCTCCCCGACATCCCTCTC 60.835 68.421 0.00 0.00 0.00 3.20
453 454 2.283809 CCTCCCCGACATCCCTCT 59.716 66.667 0.00 0.00 0.00 3.69
454 455 2.844839 CCCTCCCCGACATCCCTC 60.845 72.222 0.00 0.00 0.00 4.30
455 456 4.499116 CCCCTCCCCGACATCCCT 62.499 72.222 0.00 0.00 0.00 4.20
457 458 4.492303 TCCCCCTCCCCGACATCC 62.492 72.222 0.00 0.00 0.00 3.51
458 459 2.844839 CTCCCCCTCCCCGACATC 60.845 72.222 0.00 0.00 0.00 3.06
459 460 3.268647 AACTCCCCCTCCCCGACAT 62.269 63.158 0.00 0.00 0.00 3.06
460 461 3.918328 GAACTCCCCCTCCCCGACA 62.918 68.421 0.00 0.00 0.00 4.35
461 462 3.082055 GAACTCCCCCTCCCCGAC 61.082 72.222 0.00 0.00 0.00 4.79
462 463 2.817420 GAAGAACTCCCCCTCCCCGA 62.817 65.000 0.00 0.00 0.00 5.14
463 464 2.285442 AAGAACTCCCCCTCCCCG 60.285 66.667 0.00 0.00 0.00 5.73
464 465 1.083141 AGAAGAACTCCCCCTCCCC 59.917 63.158 0.00 0.00 0.00 4.81
465 466 1.275421 CCAGAAGAACTCCCCCTCCC 61.275 65.000 0.00 0.00 0.00 4.30
466 467 1.916206 GCCAGAAGAACTCCCCCTCC 61.916 65.000 0.00 0.00 0.00 4.30
467 468 1.604915 GCCAGAAGAACTCCCCCTC 59.395 63.158 0.00 0.00 0.00 4.30
468 469 2.294078 CGCCAGAAGAACTCCCCCT 61.294 63.158 0.00 0.00 0.00 4.79
469 470 2.269241 CGCCAGAAGAACTCCCCC 59.731 66.667 0.00 0.00 0.00 5.40
470 471 2.269241 CCGCCAGAAGAACTCCCC 59.731 66.667 0.00 0.00 0.00 4.81
471 472 1.614241 TAGCCGCCAGAAGAACTCCC 61.614 60.000 0.00 0.00 0.00 4.30
472 473 0.179097 CTAGCCGCCAGAAGAACTCC 60.179 60.000 0.00 0.00 0.00 3.85
473 474 0.179097 CCTAGCCGCCAGAAGAACTC 60.179 60.000 0.00 0.00 0.00 3.01
474 475 1.617947 CCCTAGCCGCCAGAAGAACT 61.618 60.000 0.00 0.00 0.00 3.01
475 476 1.153349 CCCTAGCCGCCAGAAGAAC 60.153 63.158 0.00 0.00 0.00 3.01
476 477 1.198759 AACCCTAGCCGCCAGAAGAA 61.199 55.000 0.00 0.00 0.00 2.52
477 478 1.198759 AAACCCTAGCCGCCAGAAGA 61.199 55.000 0.00 0.00 0.00 2.87
478 479 0.744771 GAAACCCTAGCCGCCAGAAG 60.745 60.000 0.00 0.00 0.00 2.85
479 480 1.298667 GAAACCCTAGCCGCCAGAA 59.701 57.895 0.00 0.00 0.00 3.02
480 481 2.987125 GAAACCCTAGCCGCCAGA 59.013 61.111 0.00 0.00 0.00 3.86
481 482 2.511600 CGAAACCCTAGCCGCCAG 60.512 66.667 0.00 0.00 0.00 4.85
482 483 3.305177 GACGAAACCCTAGCCGCCA 62.305 63.158 0.00 0.00 0.00 5.69
483 484 2.510918 GACGAAACCCTAGCCGCC 60.511 66.667 0.00 0.00 0.00 6.13
484 485 2.510918 GGACGAAACCCTAGCCGC 60.511 66.667 0.00 0.00 0.00 6.53
485 486 2.202703 CGGACGAAACCCTAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
486 487 2.186125 CCGGACGAAACCCTAGCC 59.814 66.667 0.00 0.00 0.00 3.93
487 488 2.186125 CCCGGACGAAACCCTAGC 59.814 66.667 0.73 0.00 0.00 3.42
488 489 1.514553 GACCCGGACGAAACCCTAG 59.485 63.158 0.73 0.00 0.00 3.02
489 490 2.342650 CGACCCGGACGAAACCCTA 61.343 63.158 0.73 0.00 0.00 3.53
490 491 3.688159 CGACCCGGACGAAACCCT 61.688 66.667 0.73 0.00 0.00 4.34
491 492 3.683937 TCGACCCGGACGAAACCC 61.684 66.667 18.23 0.00 36.84 4.11
492 493 2.431430 GTCGACCCGGACGAAACC 60.431 66.667 21.12 9.05 41.31 3.27
493 494 2.431430 GGTCGACCCGGACGAAAC 60.431 66.667 24.75 14.83 41.31 2.78
513 514 3.310860 ATCGCTCGTGTTGTCCCCC 62.311 63.158 0.00 0.00 0.00 5.40
514 515 2.100631 CATCGCTCGTGTTGTCCCC 61.101 63.158 0.00 0.00 0.00 4.81
515 516 1.374252 ACATCGCTCGTGTTGTCCC 60.374 57.895 0.00 0.00 0.00 4.46
516 517 0.944311 ACACATCGCTCGTGTTGTCC 60.944 55.000 0.00 0.00 45.12 4.02
517 518 2.517598 ACACATCGCTCGTGTTGTC 58.482 52.632 0.00 0.00 45.12 3.18
518 519 4.750460 ACACATCGCTCGTGTTGT 57.250 50.000 0.00 0.00 45.12 3.32
522 523 2.661504 TTGAAAACACATCGCTCGTG 57.338 45.000 0.00 0.00 40.32 4.35
535 536 8.567285 AAAACATTATTTGGGTGTGTTGAAAA 57.433 26.923 0.00 0.00 33.67 2.29
536 537 7.824289 TGAAAACATTATTTGGGTGTGTTGAAA 59.176 29.630 0.00 0.00 33.67 2.69
537 538 7.331026 TGAAAACATTATTTGGGTGTGTTGAA 58.669 30.769 0.00 0.00 33.67 2.69
538 539 6.878317 TGAAAACATTATTTGGGTGTGTTGA 58.122 32.000 0.00 0.00 33.67 3.18
539 540 6.983307 TCTGAAAACATTATTTGGGTGTGTTG 59.017 34.615 0.00 0.00 33.67 3.33
540 541 6.983890 GTCTGAAAACATTATTTGGGTGTGTT 59.016 34.615 0.00 0.00 34.74 3.32
541 542 6.512297 GTCTGAAAACATTATTTGGGTGTGT 58.488 36.000 0.00 0.00 0.00 3.72
542 543 5.629020 CGTCTGAAAACATTATTTGGGTGTG 59.371 40.000 0.00 0.00 0.00 3.82
543 544 5.533154 TCGTCTGAAAACATTATTTGGGTGT 59.467 36.000 0.00 0.00 0.00 4.16
544 545 6.007936 TCGTCTGAAAACATTATTTGGGTG 57.992 37.500 0.00 0.00 0.00 4.61
545 546 6.834168 ATCGTCTGAAAACATTATTTGGGT 57.166 33.333 0.00 0.00 0.00 4.51
546 547 7.273381 GTCAATCGTCTGAAAACATTATTTGGG 59.727 37.037 0.00 0.00 0.00 4.12
547 548 7.273381 GGTCAATCGTCTGAAAACATTATTTGG 59.727 37.037 0.00 0.00 0.00 3.28
548 549 8.023128 AGGTCAATCGTCTGAAAACATTATTTG 58.977 33.333 0.00 0.00 0.00 2.32
549 550 8.023128 CAGGTCAATCGTCTGAAAACATTATTT 58.977 33.333 0.00 0.00 0.00 1.40
550 551 7.530010 CAGGTCAATCGTCTGAAAACATTATT 58.470 34.615 0.00 0.00 0.00 1.40
551 552 6.403636 GCAGGTCAATCGTCTGAAAACATTAT 60.404 38.462 0.00 0.00 0.00 1.28
552 553 5.106712 GCAGGTCAATCGTCTGAAAACATTA 60.107 40.000 0.00 0.00 0.00 1.90
553 554 4.320494 GCAGGTCAATCGTCTGAAAACATT 60.320 41.667 0.00 0.00 0.00 2.71
554 555 3.189287 GCAGGTCAATCGTCTGAAAACAT 59.811 43.478 0.00 0.00 0.00 2.71
555 556 2.548057 GCAGGTCAATCGTCTGAAAACA 59.452 45.455 0.00 0.00 0.00 2.83
556 557 2.548057 TGCAGGTCAATCGTCTGAAAAC 59.452 45.455 0.00 0.00 0.00 2.43
557 558 2.807967 CTGCAGGTCAATCGTCTGAAAA 59.192 45.455 5.57 0.00 0.00 2.29
558 559 2.416747 CTGCAGGTCAATCGTCTGAAA 58.583 47.619 5.57 0.00 0.00 2.69
559 560 1.941209 GCTGCAGGTCAATCGTCTGAA 60.941 52.381 17.12 0.00 0.00 3.02
560 561 0.390340 GCTGCAGGTCAATCGTCTGA 60.390 55.000 17.12 0.00 0.00 3.27
561 562 0.390866 AGCTGCAGGTCAATCGTCTG 60.391 55.000 13.85 0.00 0.00 3.51
562 563 1.186200 TAGCTGCAGGTCAATCGTCT 58.814 50.000 23.94 5.79 0.00 4.18
563 564 2.231215 ATAGCTGCAGGTCAATCGTC 57.769 50.000 23.94 0.00 0.00 4.20
564 565 2.283298 CAATAGCTGCAGGTCAATCGT 58.717 47.619 23.94 0.00 0.00 3.73
565 566 2.031314 CACAATAGCTGCAGGTCAATCG 59.969 50.000 23.94 10.16 0.00 3.34
566 567 3.012518 ACACAATAGCTGCAGGTCAATC 58.987 45.455 23.94 0.00 0.00 2.67
567 568 3.077484 ACACAATAGCTGCAGGTCAAT 57.923 42.857 23.94 8.69 0.00 2.57
568 569 2.566833 ACACAATAGCTGCAGGTCAA 57.433 45.000 23.94 6.21 0.00 3.18
569 570 2.566833 AACACAATAGCTGCAGGTCA 57.433 45.000 23.94 9.53 0.00 4.02
570 571 3.253188 TGAAAACACAATAGCTGCAGGTC 59.747 43.478 23.94 1.74 0.00 3.85
571 572 3.221771 TGAAAACACAATAGCTGCAGGT 58.778 40.909 23.72 23.72 0.00 4.00
572 573 3.254166 ACTGAAAACACAATAGCTGCAGG 59.746 43.478 17.12 0.00 0.00 4.85
573 574 4.494350 ACTGAAAACACAATAGCTGCAG 57.506 40.909 10.11 10.11 0.00 4.41
574 575 6.573664 ATTACTGAAAACACAATAGCTGCA 57.426 33.333 1.02 0.00 0.00 4.41
575 576 7.752695 AGTATTACTGAAAACACAATAGCTGC 58.247 34.615 0.00 0.00 0.00 5.25
591 592 7.384543 CACTTACGTGTGCGCAGTATTACTG 62.385 48.000 12.22 17.76 41.34 2.74
592 593 2.925578 TACGTGTGCGCAGTATTACT 57.074 45.000 12.22 0.00 42.83 2.24
593 594 2.919229 ACTTACGTGTGCGCAGTATTAC 59.081 45.455 12.22 4.40 42.83 1.89
594 595 2.918600 CACTTACGTGTGCGCAGTATTA 59.081 45.455 12.22 0.00 42.83 0.98
595 596 1.724623 CACTTACGTGTGCGCAGTATT 59.275 47.619 12.22 0.00 42.83 1.89
596 597 1.346365 CACTTACGTGTGCGCAGTAT 58.654 50.000 12.22 0.00 42.83 2.12
597 598 2.803979 CACTTACGTGTGCGCAGTA 58.196 52.632 12.22 7.20 42.83 2.74
598 599 3.625232 CACTTACGTGTGCGCAGT 58.375 55.556 12.22 8.44 42.83 4.40
608 609 3.181503 ACCTGTACTCATACGCACTTACG 60.182 47.826 0.00 0.00 33.60 3.18
609 610 4.367386 ACCTGTACTCATACGCACTTAC 57.633 45.455 0.00 0.00 33.60 2.34
613 614 1.659098 GCAACCTGTACTCATACGCAC 59.341 52.381 0.00 0.00 33.60 5.34
616 617 2.165641 TCCAGCAACCTGTACTCATACG 59.834 50.000 0.00 0.00 37.38 3.06
619 620 4.033709 ACTATCCAGCAACCTGTACTCAT 58.966 43.478 0.00 0.00 37.38 2.90
627 628 1.279271 GTGTCCACTATCCAGCAACCT 59.721 52.381 0.00 0.00 0.00 3.50
646 647 2.750350 CCTTTCCCTGCTCACCGT 59.250 61.111 0.00 0.00 0.00 4.83
649 650 2.032681 ACGCCTTTCCCTGCTCAC 59.967 61.111 0.00 0.00 0.00 3.51
670 671 0.179076 CTGACGGTGATATGGCAGCA 60.179 55.000 0.00 0.00 36.11 4.41
672 673 0.882042 GGCTGACGGTGATATGGCAG 60.882 60.000 0.00 0.00 0.00 4.85
678 679 0.104120 CGGATTGGCTGACGGTGATA 59.896 55.000 0.00 0.00 0.00 2.15
691 692 0.650512 GTGTCGGCATACACGGATTG 59.349 55.000 0.00 0.00 40.31 2.67
717 718 5.221244 GCTCCCATGTGAGTAACAAAAGTTT 60.221 40.000 7.06 0.00 43.61 2.66
744 745 4.488790 CAGAGTTGCAGCTTGGGT 57.511 55.556 3.97 0.00 0.00 4.51
806 807 3.324108 GGTCAGGGGGCCACGTTA 61.324 66.667 4.39 0.00 0.00 3.18
857 880 5.050363 CGTATGCATACAATTGTGGTCTACC 60.050 44.000 30.83 4.09 32.87 3.18
870 893 9.325198 GATCCATTAAATATCCGTATGCATACA 57.675 33.333 30.83 16.71 32.87 2.29
945 969 4.802918 GCTGAGGCCACTGTTAGAAACTTA 60.803 45.833 5.01 0.00 0.00 2.24
946 970 3.744660 CTGAGGCCACTGTTAGAAACTT 58.255 45.455 5.01 0.00 0.00 2.66
947 971 2.551071 GCTGAGGCCACTGTTAGAAACT 60.551 50.000 5.01 0.00 0.00 2.66
948 972 1.807142 GCTGAGGCCACTGTTAGAAAC 59.193 52.381 5.01 0.00 0.00 2.78
949 973 2.185004 GCTGAGGCCACTGTTAGAAA 57.815 50.000 5.01 0.00 0.00 2.52
950 974 3.935993 GCTGAGGCCACTGTTAGAA 57.064 52.632 5.01 0.00 0.00 2.10
992 1024 4.579869 CTTATCTGCTTGGTTGTGTAGGT 58.420 43.478 0.00 0.00 0.00 3.08
1115 1153 0.545548 AAGTCCTCGCCCTCCTTCTT 60.546 55.000 0.00 0.00 0.00 2.52
1116 1154 0.973496 GAAGTCCTCGCCCTCCTTCT 60.973 60.000 0.00 0.00 31.15 2.85
1117 1155 1.518302 GAAGTCCTCGCCCTCCTTC 59.482 63.158 0.00 0.00 0.00 3.46
1164 1202 0.740868 CTCGGTCGAGTACCCGTACA 60.741 60.000 11.42 0.00 46.62 2.90
1332 1370 3.380954 TGCGTATGGTAATTACGACTCCA 59.619 43.478 9.46 2.06 39.31 3.86
1333 1371 3.968649 TGCGTATGGTAATTACGACTCC 58.031 45.455 9.46 0.00 39.31 3.85
1336 1374 8.899776 GCTATATATGCGTATGGTAATTACGAC 58.100 37.037 8.77 6.68 39.31 4.34
1337 1375 8.843262 AGCTATATATGCGTATGGTAATTACGA 58.157 33.333 8.77 6.14 39.31 3.43
1338 1376 9.114965 GAGCTATATATGCGTATGGTAATTACG 57.885 37.037 8.77 1.46 39.87 3.18
1660 1702 1.254284 CGTCCCAGCCTCTCTCACTT 61.254 60.000 0.00 0.00 0.00 3.16
1661 1703 1.680651 CGTCCCAGCCTCTCTCACT 60.681 63.158 0.00 0.00 0.00 3.41
1702 1744 0.517132 CGCAGAGAAAATCACGCACG 60.517 55.000 0.00 0.00 0.00 5.34
1740 1782 2.795329 ACAGCAACCCCACTTATTCAG 58.205 47.619 0.00 0.00 0.00 3.02
1892 1938 9.713740 GACACTATTAGAGCAAATTTTGAGATG 57.286 33.333 13.26 4.02 0.00 2.90
1908 1954 8.771920 TCCAGTACAAACAATGACACTATTAG 57.228 34.615 0.00 0.00 0.00 1.73
1912 1958 6.072728 GCAATCCAGTACAAACAATGACACTA 60.073 38.462 0.00 0.00 0.00 2.74
1915 1961 4.826733 AGCAATCCAGTACAAACAATGACA 59.173 37.500 0.00 0.00 0.00 3.58
1916 1962 5.376854 AGCAATCCAGTACAAACAATGAC 57.623 39.130 0.00 0.00 0.00 3.06
1917 1963 6.488344 TGTAAGCAATCCAGTACAAACAATGA 59.512 34.615 0.00 0.00 0.00 2.57
1919 1965 6.892658 TGTAAGCAATCCAGTACAAACAAT 57.107 33.333 0.00 0.00 0.00 2.71
1920 1966 6.095580 TGTTGTAAGCAATCCAGTACAAACAA 59.904 34.615 0.00 0.00 37.98 2.83
1922 1968 6.067263 TGTTGTAAGCAATCCAGTACAAAC 57.933 37.500 0.00 0.00 37.98 2.93
1924 1970 5.767665 ACATGTTGTAAGCAATCCAGTACAA 59.232 36.000 0.00 0.00 36.92 2.41
1925 1971 5.181056 CACATGTTGTAAGCAATCCAGTACA 59.819 40.000 0.00 0.00 36.92 2.90
1927 1973 5.312895 ACACATGTTGTAAGCAATCCAGTA 58.687 37.500 0.00 0.00 36.32 2.74
1928 1974 4.144297 ACACATGTTGTAAGCAATCCAGT 58.856 39.130 0.00 0.00 36.32 4.00
1931 1977 4.475944 GTGACACATGTTGTAAGCAATCC 58.524 43.478 0.00 0.00 39.17 3.01
1933 1979 3.563808 ACGTGACACATGTTGTAAGCAAT 59.436 39.130 6.37 0.00 39.17 3.56
1934 1980 2.939756 ACGTGACACATGTTGTAAGCAA 59.060 40.909 6.37 0.00 39.17 3.91
1935 1981 2.286563 CACGTGACACATGTTGTAAGCA 59.713 45.455 10.90 0.00 39.17 3.91
1936 1982 2.349438 CCACGTGACACATGTTGTAAGC 60.349 50.000 19.30 0.00 39.17 3.09
1937 1983 2.869801 ACCACGTGACACATGTTGTAAG 59.130 45.455 19.30 0.00 39.17 2.34
1939 1985 2.605837 ACCACGTGACACATGTTGTA 57.394 45.000 19.30 0.00 39.17 2.41
1940 1986 1.400142 CAACCACGTGACACATGTTGT 59.600 47.619 19.30 0.00 43.10 3.32
1942 1988 0.380378 GCAACCACGTGACACATGTT 59.620 50.000 19.30 8.51 30.47 2.71
1945 1991 2.250939 CCGCAACCACGTGACACAT 61.251 57.895 19.30 0.00 0.00 3.21
1946 1992 2.892914 CCGCAACCACGTGACACA 60.893 61.111 19.30 0.00 0.00 3.72
1948 1994 3.387225 TTCCCGCAACCACGTGACA 62.387 57.895 19.30 0.00 0.00 3.58
1949 1995 2.589442 TTCCCGCAACCACGTGAC 60.589 61.111 19.30 2.31 0.00 3.67
1950 1996 1.746322 TACTTCCCGCAACCACGTGA 61.746 55.000 19.30 0.00 0.00 4.35
1951 1997 0.672401 ATACTTCCCGCAACCACGTG 60.672 55.000 9.08 9.08 0.00 4.49
1954 2000 4.332428 AGTATATACTTCCCGCAACCAC 57.668 45.455 9.71 0.00 31.13 4.16
1955 2001 4.406326 TCAAGTATATACTTCCCGCAACCA 59.594 41.667 22.60 0.00 44.19 3.67
1957 2003 5.598769 ACTCAAGTATATACTTCCCGCAAC 58.401 41.667 22.60 0.00 44.19 4.17
1960 2006 5.839621 TGAACTCAAGTATATACTTCCCGC 58.160 41.667 22.60 12.82 44.19 6.13
1962 2008 6.651225 GGCATGAACTCAAGTATATACTTCCC 59.349 42.308 22.60 11.75 44.19 3.97
1964 2010 9.413048 GTAGGCATGAACTCAAGTATATACTTC 57.587 37.037 22.60 13.31 44.19 3.01
1965 2011 8.924303 TGTAGGCATGAACTCAAGTATATACTT 58.076 33.333 20.27 20.27 46.76 2.24
1966 2012 8.478775 TGTAGGCATGAACTCAAGTATATACT 57.521 34.615 9.71 9.71 38.39 2.12
1968 2014 7.865889 CGTTGTAGGCATGAACTCAAGTATATA 59.134 37.037 0.00 0.00 0.00 0.86
1969 2015 6.701841 CGTTGTAGGCATGAACTCAAGTATAT 59.298 38.462 0.00 0.00 0.00 0.86
1974 3697 3.325870 TCGTTGTAGGCATGAACTCAAG 58.674 45.455 0.00 0.00 0.00 3.02
2009 3739 5.920193 TTTTGATTTGGGGAGCAGATTAG 57.080 39.130 0.00 0.00 0.00 1.73
2056 3786 9.219603 TGAATTAACACTGACTCTAGATTTTGG 57.780 33.333 0.00 0.00 0.00 3.28
2063 3793 9.469807 GGATACATGAATTAACACTGACTCTAG 57.530 37.037 0.00 0.00 0.00 2.43
2071 3801 5.163088 GGGGAGGGATACATGAATTAACACT 60.163 44.000 0.00 0.00 39.74 3.55
2103 3833 9.612620 ATGACACGAGAAATACAAAGATTTTTC 57.387 29.630 0.00 0.00 30.36 2.29
2112 3844 6.873997 ACTCCATATGACACGAGAAATACAA 58.126 36.000 3.65 0.00 0.00 2.41
2130 3863 0.461516 CACGCTGATGCTGACTCCAT 60.462 55.000 0.00 0.00 36.97 3.41
2184 3917 9.869844 CCATGTTGTTATTTCGCAAAATAAAAA 57.130 25.926 4.17 3.02 44.73 1.94
2185 3918 9.046296 ACCATGTTGTTATTTCGCAAAATAAAA 57.954 25.926 4.17 0.00 44.73 1.52
2186 3919 8.491152 CACCATGTTGTTATTTCGCAAAATAAA 58.509 29.630 4.17 0.00 44.73 1.40
2187 3920 7.867909 TCACCATGTTGTTATTTCGCAAAATAA 59.132 29.630 0.00 0.00 42.36 1.40
2188 3921 7.371159 TCACCATGTTGTTATTTCGCAAAATA 58.629 30.769 0.00 0.00 36.49 1.40
2189 3922 6.219473 TCACCATGTTGTTATTTCGCAAAAT 58.781 32.000 0.00 0.00 38.61 1.82
2190 3923 5.592054 TCACCATGTTGTTATTTCGCAAAA 58.408 33.333 0.00 0.00 0.00 2.44
2191 3924 5.188327 TCACCATGTTGTTATTTCGCAAA 57.812 34.783 0.00 0.00 0.00 3.68
2192 3925 4.837896 TCACCATGTTGTTATTTCGCAA 57.162 36.364 0.00 0.00 0.00 4.85
2193 3926 6.691754 ATATCACCATGTTGTTATTTCGCA 57.308 33.333 0.00 0.00 0.00 5.10
2194 3927 7.589954 GGTTATATCACCATGTTGTTATTTCGC 59.410 37.037 0.93 0.00 36.73 4.70
2195 3928 8.836413 AGGTTATATCACCATGTTGTTATTTCG 58.164 33.333 8.77 0.00 39.62 3.46
2200 3933 9.567776 CCATTAGGTTATATCACCATGTTGTTA 57.432 33.333 8.77 0.00 39.62 2.41
2201 3934 8.278639 TCCATTAGGTTATATCACCATGTTGTT 58.721 33.333 8.77 0.00 39.62 2.83
2202 3935 7.811282 TCCATTAGGTTATATCACCATGTTGT 58.189 34.615 8.77 0.00 39.62 3.32
2203 3936 8.156820 TCTCCATTAGGTTATATCACCATGTTG 58.843 37.037 8.77 1.27 39.62 3.33
2340 4077 6.085328 GCTCAAATTTTGCTTTGTTTTATGCG 59.915 34.615 4.19 0.00 37.39 4.73
2358 4095 5.634859 GTCAAACCAATCGATTTGCTCAAAT 59.365 36.000 8.21 7.49 43.14 2.32
2363 4100 4.549458 CTTGTCAAACCAATCGATTTGCT 58.451 39.130 8.21 0.00 36.06 3.91
2402 4140 3.587506 TCCTTTCCACTTTAGGGAAGAGG 59.412 47.826 2.58 7.74 45.62 3.69
2517 4559 7.631750 GTGTTTTTATGAATTATGCGCATGTTG 59.368 33.333 32.48 0.00 0.00 3.33
2524 4566 8.633075 ATTCCTGTGTTTTTATGAATTATGCG 57.367 30.769 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.