Multiple sequence alignment - TraesCS4B01G111300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G111300 chr4B 100.000 4277 0 0 1 4277 124919248 124914972 0.000000e+00 7899.0
1 TraesCS4B01G111300 chr4B 79.459 185 35 3 2188 2370 398576229 398576046 1.250000e-25 128.0
2 TraesCS4B01G111300 chr4B 86.957 115 12 3 2672 2785 522075060 522075172 4.490000e-25 126.0
3 TraesCS4B01G111300 chr4D 92.453 2014 69 19 1 1962 88143973 88141991 0.000000e+00 2800.0
4 TraesCS4B01G111300 chr4D 96.053 836 19 7 2780 3610 88141508 88140682 0.000000e+00 1349.0
5 TraesCS4B01G111300 chr4D 93.609 266 15 2 2437 2700 88141770 88141505 3.100000e-106 396.0
6 TraesCS4B01G111300 chr4D 94.681 94 5 0 2271 2364 5597590 5597497 3.450000e-31 147.0
7 TraesCS4B01G111300 chr4D 94.203 69 2 2 2371 2439 88141999 88141933 2.100000e-18 104.0
8 TraesCS4B01G111300 chr4A 95.550 1191 36 2 788 1962 501125218 501124029 0.000000e+00 1890.0
9 TraesCS4B01G111300 chr4A 95.991 848 28 5 2783 3624 501123514 501122667 0.000000e+00 1373.0
10 TraesCS4B01G111300 chr4A 86.643 831 41 30 12 803 501126034 501125235 0.000000e+00 856.0
11 TraesCS4B01G111300 chr4A 90.494 263 23 2 2437 2698 501123771 501123510 3.170000e-91 346.0
12 TraesCS4B01G111300 chr7B 94.946 653 28 3 3629 4277 497030065 497029414 0.000000e+00 1018.0
13 TraesCS4B01G111300 chr7B 94.624 93 5 0 2689 2781 66196713 66196621 1.240000e-30 145.0
14 TraesCS4B01G111300 chr1B 94.817 656 28 4 3627 4277 490718391 490719045 0.000000e+00 1018.0
15 TraesCS4B01G111300 chr1B 93.617 94 6 0 2691 2784 325979102 325979009 1.600000e-29 141.0
16 TraesCS4B01G111300 chr1B 92.000 100 7 1 2689 2787 33839312 33839411 5.770000e-29 139.0
17 TraesCS4B01G111300 chr5D 94.801 654 29 3 3628 4277 199086700 199087352 0.000000e+00 1014.0
18 TraesCS4B01G111300 chr5D 94.801 654 29 3 3628 4277 287023462 287024114 0.000000e+00 1014.0
19 TraesCS4B01G111300 chr5D 94.665 656 30 3 3626 4277 539550551 539549897 0.000000e+00 1013.0
20 TraesCS4B01G111300 chr5D 94.648 654 30 3 3628 4277 507370968 507370316 0.000000e+00 1009.0
21 TraesCS4B01G111300 chr5D 82.418 182 29 2 2188 2366 378127603 378127422 5.730000e-34 156.0
22 TraesCS4B01G111300 chr5D 91.667 96 8 0 2687 2782 475860866 475860961 2.680000e-27 134.0
23 TraesCS4B01G111300 chr7D 94.656 655 30 3 3627 4277 446182805 446183458 0.000000e+00 1011.0
24 TraesCS4B01G111300 chr7D 87.013 77 8 2 1385 1461 225199175 225199101 7.620000e-13 86.1
25 TraesCS4B01G111300 chr1D 94.656 655 30 3 3627 4277 142329220 142329873 0.000000e+00 1011.0
26 TraesCS4B01G111300 chr1D 93.478 92 6 0 2694 2785 402722636 402722727 2.070000e-28 137.0
27 TraesCS4B01G111300 chr1D 90.909 66 6 0 1396 1461 366689561 366689626 5.890000e-14 89.8
28 TraesCS4B01G111300 chr1D 85.542 83 12 0 1611 1693 48885922 48886004 2.120000e-13 87.9
29 TraesCS4B01G111300 chr2D 94.504 655 30 4 3628 4277 306416936 306416283 0.000000e+00 1005.0
30 TraesCS4B01G111300 chr2D 93.043 230 13 2 2140 2366 513122751 513122980 2.460000e-87 333.0
31 TraesCS4B01G111300 chr2D 88.439 173 15 4 1957 2127 513114260 513114429 2.020000e-48 204.0
32 TraesCS4B01G111300 chr6D 95.604 91 4 0 2692 2782 268067108 268067198 3.450000e-31 147.0
33 TraesCS4B01G111300 chr3B 92.708 96 6 1 2690 2784 253630834 253630739 2.070000e-28 137.0
34 TraesCS4B01G111300 chr1A 91.919 99 7 1 2692 2790 102719904 102719807 2.070000e-28 137.0
35 TraesCS4B01G111300 chr1A 83.333 84 12 2 1611 1693 48785596 48785678 4.590000e-10 76.8
36 TraesCS4B01G111300 chr5B 75.157 318 55 15 2009 2307 570380693 570381005 1.250000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G111300 chr4B 124914972 124919248 4276 True 7899.00 7899 100.0000 1 4277 1 chr4B.!!$R1 4276
1 TraesCS4B01G111300 chr4D 88140682 88143973 3291 True 1162.25 2800 94.0795 1 3610 4 chr4D.!!$R2 3609
2 TraesCS4B01G111300 chr4A 501122667 501126034 3367 True 1116.25 1890 92.1695 12 3624 4 chr4A.!!$R1 3612
3 TraesCS4B01G111300 chr7B 497029414 497030065 651 True 1018.00 1018 94.9460 3629 4277 1 chr7B.!!$R2 648
4 TraesCS4B01G111300 chr1B 490718391 490719045 654 False 1018.00 1018 94.8170 3627 4277 1 chr1B.!!$F2 650
5 TraesCS4B01G111300 chr5D 199086700 199087352 652 False 1014.00 1014 94.8010 3628 4277 1 chr5D.!!$F1 649
6 TraesCS4B01G111300 chr5D 287023462 287024114 652 False 1014.00 1014 94.8010 3628 4277 1 chr5D.!!$F2 649
7 TraesCS4B01G111300 chr5D 539549897 539550551 654 True 1013.00 1013 94.6650 3626 4277 1 chr5D.!!$R3 651
8 TraesCS4B01G111300 chr5D 507370316 507370968 652 True 1009.00 1009 94.6480 3628 4277 1 chr5D.!!$R2 649
9 TraesCS4B01G111300 chr7D 446182805 446183458 653 False 1011.00 1011 94.6560 3627 4277 1 chr7D.!!$F1 650
10 TraesCS4B01G111300 chr1D 142329220 142329873 653 False 1011.00 1011 94.6560 3627 4277 1 chr1D.!!$F2 650
11 TraesCS4B01G111300 chr2D 306416283 306416936 653 True 1005.00 1005 94.5040 3628 4277 1 chr2D.!!$R1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 556 0.251564 AATGCGGGGGATCACACAAA 60.252 50.0 0.0 0.0 0.0 2.83 F
2215 2326 0.030638 CTGGTCGGTTTGCAACAAGG 59.969 55.0 0.0 0.0 0.0 3.61 F
2316 2427 0.032017 AGAGCCCATCTAACGGACCT 60.032 55.0 0.0 0.0 36.1 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 2408 0.032017 AGGTCCGTTAGATGGGCTCT 60.032 55.000 0.0 0.0 38.06 4.09 R
3252 3574 3.230134 CAGCCTATTGAGCCTCTCTACT 58.770 50.000 0.0 0.0 0.00 2.57 R
3494 3818 3.773119 AGGGTGTAAGACATATTGGTCGT 59.227 43.478 0.0 0.0 42.62 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 226 1.464608 CTTACGGTGTTGCTCCATGTG 59.535 52.381 0.00 0.00 0.00 3.21
203 228 0.465460 ACGGTGTTGCTCCATGTGTT 60.465 50.000 0.00 0.00 0.00 3.32
227 252 4.442192 GGGCTCTCTGACGTGAATCTTTAT 60.442 45.833 0.00 0.00 0.00 1.40
228 253 4.505922 GGCTCTCTGACGTGAATCTTTATG 59.494 45.833 0.00 0.00 0.00 1.90
229 254 4.505922 GCTCTCTGACGTGAATCTTTATGG 59.494 45.833 0.00 0.00 0.00 2.74
230 255 4.433615 TCTCTGACGTGAATCTTTATGGC 58.566 43.478 0.00 0.00 0.00 4.40
231 256 4.160439 TCTCTGACGTGAATCTTTATGGCT 59.840 41.667 0.00 0.00 0.00 4.75
232 257 4.832248 TCTGACGTGAATCTTTATGGCTT 58.168 39.130 0.00 0.00 0.00 4.35
233 258 5.245531 TCTGACGTGAATCTTTATGGCTTT 58.754 37.500 0.00 0.00 0.00 3.51
234 259 6.403049 TCTGACGTGAATCTTTATGGCTTTA 58.597 36.000 0.00 0.00 0.00 1.85
325 350 1.021390 CCAGCCAGCAAAGTACCTCG 61.021 60.000 0.00 0.00 0.00 4.63
440 471 0.924090 GCTTCGAAGTCTGCCGTATG 59.076 55.000 25.24 0.00 0.00 2.39
441 472 0.924090 CTTCGAAGTCTGCCGTATGC 59.076 55.000 17.24 0.00 41.77 3.14
442 473 0.459585 TTCGAAGTCTGCCGTATGCC 60.460 55.000 0.00 0.00 40.16 4.40
443 474 1.141881 CGAAGTCTGCCGTATGCCT 59.858 57.895 0.00 0.00 40.16 4.75
444 475 1.148157 CGAAGTCTGCCGTATGCCTG 61.148 60.000 0.00 0.00 40.16 4.85
525 556 0.251564 AATGCGGGGGATCACACAAA 60.252 50.000 0.00 0.00 0.00 2.83
526 557 0.965363 ATGCGGGGGATCACACAAAC 60.965 55.000 0.00 0.00 0.00 2.93
528 559 1.175983 GCGGGGGATCACACAAACAA 61.176 55.000 0.00 0.00 0.00 2.83
529 560 1.544724 CGGGGGATCACACAAACAAT 58.455 50.000 0.00 0.00 0.00 2.71
530 561 2.717390 CGGGGGATCACACAAACAATA 58.283 47.619 0.00 0.00 0.00 1.90
531 562 2.682856 CGGGGGATCACACAAACAATAG 59.317 50.000 0.00 0.00 0.00 1.73
585 624 1.970917 GCCGCTCTCCGTGTGAATTG 61.971 60.000 0.00 0.00 34.38 2.32
586 625 1.421485 CGCTCTCCGTGTGAATTGC 59.579 57.895 0.00 0.00 0.00 3.56
608 647 5.992829 TGCGTCCTGATTTCTTACAAAGTTA 59.007 36.000 0.00 0.00 0.00 2.24
611 650 7.095355 GCGTCCTGATTTCTTACAAAGTTAAGA 60.095 37.037 0.00 0.00 0.00 2.10
641 680 7.596494 AGAAGTACAGTGTACGTAGCAAATAA 58.404 34.615 24.13 0.00 0.00 1.40
644 683 7.373493 AGTACAGTGTACGTAGCAAATAAGTT 58.627 34.615 24.13 2.53 0.00 2.66
651 690 8.108782 GTGTACGTAGCAAATAAGTTCAGATTC 58.891 37.037 0.00 0.00 0.00 2.52
675 714 2.855180 CCATCGCAAACTAAGCACAAG 58.145 47.619 0.00 0.00 0.00 3.16
707 746 0.812014 TGCGGTTGAAACTGAAGCGA 60.812 50.000 6.19 0.00 44.91 4.93
753 792 9.579768 GTATACTGTGACATCATATCAGATTCC 57.420 37.037 5.30 0.00 0.00 3.01
758 797 6.558394 TGTGACATCATATCAGATTCCCCTTA 59.442 38.462 0.00 0.00 0.00 2.69
838 927 2.426738 CTGCAGAAGAGAACGAGGAGAT 59.573 50.000 8.42 0.00 0.00 2.75
842 931 3.194542 CAGAAGAGAACGAGGAGATTGGT 59.805 47.826 0.00 0.00 0.00 3.67
876 965 2.959421 AGTCTTCCTCCCAGGAGAAT 57.041 50.000 15.53 0.00 46.73 2.40
980 1075 0.410663 TCTTCCTCCCCACTTCCGTA 59.589 55.000 0.00 0.00 0.00 4.02
1007 1102 3.145551 CCCTGCAGCCATGGAAGC 61.146 66.667 18.40 18.63 0.00 3.86
1008 1103 2.044252 CCTGCAGCCATGGAAGCT 60.044 61.111 18.40 1.76 42.70 3.74
1072 1167 1.003051 TCCTTACCCTGCCTCCTCC 59.997 63.158 0.00 0.00 0.00 4.30
1134 1229 4.357947 GACCACCGCTGCTCGTCA 62.358 66.667 0.00 0.00 36.19 4.35
1197 1292 2.785921 CTCTCCTCGTCGTGGTCG 59.214 66.667 12.76 6.22 38.55 4.79
1524 1619 4.140599 CTCGAGCGAGGCAGCCTT 62.141 66.667 17.46 0.00 38.51 4.35
1695 1790 2.104859 CGTGCTACTCGACGAGGGA 61.105 63.158 27.39 14.56 37.81 4.20
1802 1897 1.078497 CAGCGGGGTAATGCACTGA 60.078 57.895 0.00 0.00 0.00 3.41
1818 1913 3.057033 GCACTGACCTTCTTGCAAATCAT 60.057 43.478 0.00 0.00 34.97 2.45
1827 1922 6.183360 ACCTTCTTGCAAATCATTTCACTTCA 60.183 34.615 0.00 0.00 0.00 3.02
1834 1929 7.267128 TGCAAATCATTTCACTTCAAGAGTTT 58.733 30.769 0.00 0.00 36.10 2.66
1874 1985 4.233789 TCAGTGTTGCAAGTTTCAAACAC 58.766 39.130 0.00 13.59 0.00 3.32
1953 2064 3.771216 AGTGAAAAGTTGGATGAGGCAT 58.229 40.909 0.00 0.00 0.00 4.40
1954 2065 4.922206 AGTGAAAAGTTGGATGAGGCATA 58.078 39.130 0.00 0.00 0.00 3.14
1955 2066 4.946157 AGTGAAAAGTTGGATGAGGCATAG 59.054 41.667 0.00 0.00 0.00 2.23
1956 2067 4.702131 GTGAAAAGTTGGATGAGGCATAGT 59.298 41.667 0.00 0.00 0.00 2.12
1957 2068 5.183904 GTGAAAAGTTGGATGAGGCATAGTT 59.816 40.000 0.00 0.00 0.00 2.24
1958 2069 5.774690 TGAAAAGTTGGATGAGGCATAGTTT 59.225 36.000 0.00 0.00 0.00 2.66
1959 2070 6.945435 TGAAAAGTTGGATGAGGCATAGTTTA 59.055 34.615 0.00 0.00 0.00 2.01
1960 2071 7.450014 TGAAAAGTTGGATGAGGCATAGTTTAA 59.550 33.333 0.00 0.00 0.00 1.52
1961 2072 7.775053 AAAGTTGGATGAGGCATAGTTTAAA 57.225 32.000 0.00 0.00 0.00 1.52
1962 2073 7.775053 AAGTTGGATGAGGCATAGTTTAAAA 57.225 32.000 0.00 0.00 0.00 1.52
1963 2074 7.396540 AGTTGGATGAGGCATAGTTTAAAAG 57.603 36.000 0.00 0.00 0.00 2.27
1964 2075 7.175104 AGTTGGATGAGGCATAGTTTAAAAGA 58.825 34.615 0.00 0.00 0.00 2.52
1965 2076 7.836183 AGTTGGATGAGGCATAGTTTAAAAGAT 59.164 33.333 0.00 0.00 0.00 2.40
1966 2077 7.807977 TGGATGAGGCATAGTTTAAAAGATC 57.192 36.000 0.00 0.00 0.00 2.75
1967 2078 6.772716 TGGATGAGGCATAGTTTAAAAGATCC 59.227 38.462 0.00 0.00 0.00 3.36
1968 2079 6.073003 GGATGAGGCATAGTTTAAAAGATCCG 60.073 42.308 0.00 0.00 0.00 4.18
1969 2080 4.574828 TGAGGCATAGTTTAAAAGATCCGC 59.425 41.667 0.00 0.00 0.00 5.54
1970 2081 3.883489 AGGCATAGTTTAAAAGATCCGCC 59.117 43.478 0.00 0.00 36.04 6.13
1971 2082 3.303791 GGCATAGTTTAAAAGATCCGCCG 60.304 47.826 0.00 0.00 0.00 6.46
1972 2083 3.848554 GCATAGTTTAAAAGATCCGCCGC 60.849 47.826 0.00 0.00 0.00 6.53
1973 2084 1.092348 AGTTTAAAAGATCCGCCGCC 58.908 50.000 0.00 0.00 0.00 6.13
1974 2085 1.092348 GTTTAAAAGATCCGCCGCCT 58.908 50.000 0.00 0.00 0.00 5.52
1975 2086 2.093341 AGTTTAAAAGATCCGCCGCCTA 60.093 45.455 0.00 0.00 0.00 3.93
1976 2087 2.234300 TTAAAAGATCCGCCGCCTAG 57.766 50.000 0.00 0.00 0.00 3.02
1977 2088 0.249741 TAAAAGATCCGCCGCCTAGC 60.250 55.000 0.00 0.00 0.00 3.42
1992 2103 3.963665 GCCTAGCGAGCTATCAGATATG 58.036 50.000 5.18 0.00 0.00 1.78
1993 2104 3.629855 GCCTAGCGAGCTATCAGATATGA 59.370 47.826 5.18 0.00 0.00 2.15
1994 2105 4.497340 GCCTAGCGAGCTATCAGATATGAC 60.497 50.000 5.18 0.00 0.00 3.06
1995 2106 4.637977 CCTAGCGAGCTATCAGATATGACA 59.362 45.833 5.18 0.00 0.00 3.58
1996 2107 4.433186 AGCGAGCTATCAGATATGACAC 57.567 45.455 0.00 0.00 0.00 3.67
1997 2108 3.823304 AGCGAGCTATCAGATATGACACA 59.177 43.478 0.00 0.00 0.00 3.72
1998 2109 4.279420 AGCGAGCTATCAGATATGACACAA 59.721 41.667 0.00 0.00 0.00 3.33
1999 2110 5.047448 AGCGAGCTATCAGATATGACACAAT 60.047 40.000 0.00 0.00 0.00 2.71
2000 2111 5.061933 GCGAGCTATCAGATATGACACAATG 59.938 44.000 0.00 0.00 0.00 2.82
2001 2112 5.061933 CGAGCTATCAGATATGACACAATGC 59.938 44.000 0.00 0.00 0.00 3.56
2002 2113 5.861727 AGCTATCAGATATGACACAATGCA 58.138 37.500 0.00 0.00 0.00 3.96
2003 2114 6.293698 AGCTATCAGATATGACACAATGCAA 58.706 36.000 0.00 0.00 0.00 4.08
2004 2115 6.204301 AGCTATCAGATATGACACAATGCAAC 59.796 38.462 0.00 0.00 0.00 4.17
2005 2116 4.863152 TCAGATATGACACAATGCAACG 57.137 40.909 0.00 0.00 0.00 4.10
2006 2117 4.252878 TCAGATATGACACAATGCAACGT 58.747 39.130 0.00 0.00 0.00 3.99
2007 2118 4.329801 TCAGATATGACACAATGCAACGTC 59.670 41.667 0.00 0.00 0.00 4.34
2008 2119 4.330894 CAGATATGACACAATGCAACGTCT 59.669 41.667 0.00 0.00 0.00 4.18
2009 2120 4.937620 AGATATGACACAATGCAACGTCTT 59.062 37.500 0.00 0.00 0.00 3.01
2010 2121 3.988379 ATGACACAATGCAACGTCTTT 57.012 38.095 0.00 0.00 0.00 2.52
2011 2122 3.332761 TGACACAATGCAACGTCTTTC 57.667 42.857 0.00 0.00 0.00 2.62
2012 2123 2.942376 TGACACAATGCAACGTCTTTCT 59.058 40.909 0.00 0.00 0.00 2.52
2013 2124 3.002246 TGACACAATGCAACGTCTTTCTC 59.998 43.478 0.00 0.00 0.00 2.87
2014 2125 3.206150 ACACAATGCAACGTCTTTCTCT 58.794 40.909 0.00 0.00 0.00 3.10
2015 2126 4.377021 ACACAATGCAACGTCTTTCTCTA 58.623 39.130 0.00 0.00 0.00 2.43
2016 2127 4.211374 ACACAATGCAACGTCTTTCTCTAC 59.789 41.667 0.00 0.00 0.00 2.59
2017 2128 3.746492 ACAATGCAACGTCTTTCTCTACC 59.254 43.478 0.00 0.00 0.00 3.18
2018 2129 3.963428 ATGCAACGTCTTTCTCTACCT 57.037 42.857 0.00 0.00 0.00 3.08
2019 2130 3.746045 TGCAACGTCTTTCTCTACCTT 57.254 42.857 0.00 0.00 0.00 3.50
2020 2131 3.390135 TGCAACGTCTTTCTCTACCTTG 58.610 45.455 0.00 0.00 0.00 3.61
2021 2132 2.157863 GCAACGTCTTTCTCTACCTTGC 59.842 50.000 0.00 0.00 32.98 4.01
2022 2133 3.390135 CAACGTCTTTCTCTACCTTGCA 58.610 45.455 0.00 0.00 0.00 4.08
2023 2134 3.746045 ACGTCTTTCTCTACCTTGCAA 57.254 42.857 0.00 0.00 0.00 4.08
2024 2135 3.391049 ACGTCTTTCTCTACCTTGCAAC 58.609 45.455 0.00 0.00 0.00 4.17
2025 2136 3.181469 ACGTCTTTCTCTACCTTGCAACA 60.181 43.478 0.00 0.00 0.00 3.33
2026 2137 3.807622 CGTCTTTCTCTACCTTGCAACAA 59.192 43.478 0.00 0.00 0.00 2.83
2027 2138 4.272504 CGTCTTTCTCTACCTTGCAACAAA 59.727 41.667 0.00 0.00 0.00 2.83
2028 2139 5.559035 CGTCTTTCTCTACCTTGCAACAAAG 60.559 44.000 0.00 0.00 0.00 2.77
2037 2148 4.863152 CCTTGCAACAAAGGTCTTTTTG 57.137 40.909 0.00 4.33 41.65 2.44
2038 2149 3.063861 CCTTGCAACAAAGGTCTTTTTGC 59.936 43.478 21.82 21.82 41.65 3.68
2039 2150 2.266554 TGCAACAAAGGTCTTTTTGCG 58.733 42.857 22.36 7.43 42.45 4.85
2040 2151 1.592543 GCAACAAAGGTCTTTTTGCGG 59.407 47.619 18.00 3.42 40.80 5.69
2041 2152 2.737039 GCAACAAAGGTCTTTTTGCGGA 60.737 45.455 18.00 0.00 40.80 5.54
2042 2153 3.516615 CAACAAAGGTCTTTTTGCGGAA 58.483 40.909 0.00 0.00 40.80 4.30
2043 2154 3.878160 ACAAAGGTCTTTTTGCGGAAA 57.122 38.095 0.00 0.00 40.80 3.13
2044 2155 4.400529 ACAAAGGTCTTTTTGCGGAAAT 57.599 36.364 1.94 0.00 40.80 2.17
2045 2156 5.523438 ACAAAGGTCTTTTTGCGGAAATA 57.477 34.783 1.94 0.00 40.80 1.40
2046 2157 6.096673 ACAAAGGTCTTTTTGCGGAAATAT 57.903 33.333 1.94 0.00 40.80 1.28
2047 2158 6.521162 ACAAAGGTCTTTTTGCGGAAATATT 58.479 32.000 1.94 0.00 40.80 1.28
2048 2159 6.989759 ACAAAGGTCTTTTTGCGGAAATATTT 59.010 30.769 1.94 0.00 40.80 1.40
2049 2160 7.042119 ACAAAGGTCTTTTTGCGGAAATATTTG 60.042 33.333 5.17 8.61 40.80 2.32
2050 2161 4.929211 AGGTCTTTTTGCGGAAATATTTGC 59.071 37.500 5.17 7.59 0.00 3.68
2051 2162 4.688413 GGTCTTTTTGCGGAAATATTTGCA 59.312 37.500 18.33 13.44 35.15 4.08
2052 2163 5.178438 GGTCTTTTTGCGGAAATATTTGCAA 59.822 36.000 18.33 17.84 44.81 4.08
2053 2164 6.070829 GTCTTTTTGCGGAAATATTTGCAAC 58.929 36.000 19.84 12.17 46.00 4.17
2054 2165 4.637574 TTTTGCGGAAATATTTGCAACG 57.362 36.364 19.84 13.23 46.00 4.10
2055 2166 2.270275 TGCGGAAATATTTGCAACGG 57.730 45.000 18.33 4.58 33.80 4.44
2056 2167 1.813178 TGCGGAAATATTTGCAACGGA 59.187 42.857 18.33 9.95 33.80 4.69
2057 2168 2.159448 TGCGGAAATATTTGCAACGGAG 60.159 45.455 18.33 3.61 33.80 4.63
2058 2169 2.794631 GCGGAAATATTTGCAACGGAGG 60.795 50.000 18.33 2.97 0.00 4.30
2059 2170 2.422127 CGGAAATATTTGCAACGGAGGT 59.578 45.455 18.33 0.00 0.00 3.85
2060 2171 3.119637 CGGAAATATTTGCAACGGAGGTT 60.120 43.478 18.33 0.00 36.63 3.50
2061 2172 4.095185 CGGAAATATTTGCAACGGAGGTTA 59.905 41.667 18.33 0.00 33.72 2.85
2062 2173 5.220970 CGGAAATATTTGCAACGGAGGTTAT 60.221 40.000 18.33 0.00 33.72 1.89
2063 2174 5.977129 GGAAATATTTGCAACGGAGGTTATG 59.023 40.000 14.18 0.00 33.72 1.90
2064 2175 6.405397 GGAAATATTTGCAACGGAGGTTATGT 60.405 38.462 14.18 0.00 33.72 2.29
2065 2176 6.524101 AATATTTGCAACGGAGGTTATGTT 57.476 33.333 0.00 0.00 33.72 2.71
2066 2177 3.634568 TTTGCAACGGAGGTTATGTTG 57.365 42.857 0.00 0.22 44.38 3.33
2067 2178 2.264005 TGCAACGGAGGTTATGTTGT 57.736 45.000 6.24 0.00 43.66 3.32
2068 2179 1.876799 TGCAACGGAGGTTATGTTGTG 59.123 47.619 6.24 0.00 43.66 3.33
2069 2180 1.401018 GCAACGGAGGTTATGTTGTGC 60.401 52.381 6.24 0.00 43.66 4.57
2070 2181 2.151202 CAACGGAGGTTATGTTGTGCT 58.849 47.619 0.00 0.00 38.47 4.40
2071 2182 2.094762 ACGGAGGTTATGTTGTGCTC 57.905 50.000 0.00 0.00 0.00 4.26
2072 2183 1.623811 ACGGAGGTTATGTTGTGCTCT 59.376 47.619 0.00 0.00 0.00 4.09
2073 2184 2.038557 ACGGAGGTTATGTTGTGCTCTT 59.961 45.455 0.00 0.00 0.00 2.85
2074 2185 3.074412 CGGAGGTTATGTTGTGCTCTTT 58.926 45.455 0.00 0.00 0.00 2.52
2075 2186 3.502211 CGGAGGTTATGTTGTGCTCTTTT 59.498 43.478 0.00 0.00 0.00 2.27
2076 2187 4.023193 CGGAGGTTATGTTGTGCTCTTTTT 60.023 41.667 0.00 0.00 0.00 1.94
2100 2211 3.988379 AACATGTTTGTGTTGCGAGAT 57.012 38.095 4.92 0.00 40.60 2.75
2101 2212 3.988379 ACATGTTTGTGTTGCGAGATT 57.012 38.095 0.00 0.00 33.85 2.40
2102 2213 4.305989 ACATGTTTGTGTTGCGAGATTT 57.694 36.364 0.00 0.00 33.85 2.17
2103 2214 4.681744 ACATGTTTGTGTTGCGAGATTTT 58.318 34.783 0.00 0.00 33.85 1.82
2104 2215 5.108517 ACATGTTTGTGTTGCGAGATTTTT 58.891 33.333 0.00 0.00 33.85 1.94
2130 2241 3.243805 TTGAAACATGGGACATGTTGCAG 60.244 43.478 26.04 0.00 45.32 4.41
2131 2242 5.473266 TTGAAACATGGGACATGTTGCAGA 61.473 41.667 26.04 18.02 45.32 4.26
2132 2243 6.737225 TTGAAACATGGGACATGTTGCAGAT 61.737 40.000 26.04 13.40 45.32 2.90
2133 2244 8.145134 TTGAAACATGGGACATGTTGCAGATT 62.145 38.462 26.04 12.84 45.32 2.40
2134 2245 9.522837 TTGAAACATGGGACATGTTGCAGATTT 62.523 37.037 26.04 12.27 45.32 2.17
2163 2274 4.761235 CAACATGAGTCTTGTTGCAGAT 57.239 40.909 28.59 6.08 45.10 2.90
2164 2275 5.117355 CAACATGAGTCTTGTTGCAGATT 57.883 39.130 28.59 5.47 45.10 2.40
2165 2276 5.526115 CAACATGAGTCTTGTTGCAGATTT 58.474 37.500 28.59 4.85 45.10 2.17
2166 2277 5.779529 ACATGAGTCTTGTTGCAGATTTT 57.220 34.783 0.00 0.00 0.00 1.82
2167 2278 6.152932 ACATGAGTCTTGTTGCAGATTTTT 57.847 33.333 0.00 0.00 0.00 1.94
2185 2296 2.430546 TTTTAACATGGGCGCTGTTG 57.569 45.000 20.14 11.90 37.41 3.33
2186 2297 1.610363 TTTAACATGGGCGCTGTTGA 58.390 45.000 20.14 11.58 37.41 3.18
2187 2298 1.610363 TTAACATGGGCGCTGTTGAA 58.390 45.000 20.14 9.92 37.41 2.69
2188 2299 1.832883 TAACATGGGCGCTGTTGAAT 58.167 45.000 20.14 7.63 37.41 2.57
2189 2300 0.527565 AACATGGGCGCTGTTGAATC 59.472 50.000 12.16 0.00 35.57 2.52
2190 2301 0.322816 ACATGGGCGCTGTTGAATCT 60.323 50.000 7.64 0.00 0.00 2.40
2191 2302 1.065491 ACATGGGCGCTGTTGAATCTA 60.065 47.619 7.64 0.00 0.00 1.98
2192 2303 1.600957 CATGGGCGCTGTTGAATCTAG 59.399 52.381 7.64 0.00 0.00 2.43
2193 2304 0.744414 TGGGCGCTGTTGAATCTAGC 60.744 55.000 7.64 0.00 0.00 3.42
2194 2305 1.440145 GGGCGCTGTTGAATCTAGCC 61.440 60.000 7.64 0.00 42.10 3.93
2195 2306 0.462759 GGCGCTGTTGAATCTAGCCT 60.463 55.000 7.64 0.00 39.92 4.58
2196 2307 0.933796 GCGCTGTTGAATCTAGCCTC 59.066 55.000 0.00 0.00 34.02 4.70
2197 2308 1.472376 GCGCTGTTGAATCTAGCCTCT 60.472 52.381 0.00 0.00 34.02 3.69
2198 2309 2.200067 CGCTGTTGAATCTAGCCTCTG 58.800 52.381 0.00 0.00 34.02 3.35
2199 2310 2.559440 GCTGTTGAATCTAGCCTCTGG 58.441 52.381 0.00 0.00 0.00 3.86
2200 2311 2.093235 GCTGTTGAATCTAGCCTCTGGT 60.093 50.000 0.00 0.00 0.00 4.00
2201 2312 3.791245 CTGTTGAATCTAGCCTCTGGTC 58.209 50.000 0.00 0.00 0.00 4.02
2202 2313 2.166459 TGTTGAATCTAGCCTCTGGTCG 59.834 50.000 0.00 0.00 0.00 4.79
2203 2314 1.403814 TGAATCTAGCCTCTGGTCGG 58.596 55.000 0.00 0.00 0.00 4.79
2204 2315 1.342076 TGAATCTAGCCTCTGGTCGGT 60.342 52.381 0.00 0.00 0.00 4.69
2205 2316 1.757699 GAATCTAGCCTCTGGTCGGTT 59.242 52.381 0.00 0.00 0.00 4.44
2206 2317 1.867363 ATCTAGCCTCTGGTCGGTTT 58.133 50.000 0.00 0.00 0.00 3.27
2207 2318 0.895530 TCTAGCCTCTGGTCGGTTTG 59.104 55.000 0.00 0.00 0.00 2.93
2208 2319 0.741221 CTAGCCTCTGGTCGGTTTGC 60.741 60.000 0.00 0.00 0.00 3.68
2209 2320 1.476845 TAGCCTCTGGTCGGTTTGCA 61.477 55.000 0.00 0.00 0.00 4.08
2210 2321 1.896660 GCCTCTGGTCGGTTTGCAA 60.897 57.895 0.00 0.00 0.00 4.08
2211 2322 1.949257 CCTCTGGTCGGTTTGCAAC 59.051 57.895 0.00 0.00 0.00 4.17
2212 2323 0.817634 CCTCTGGTCGGTTTGCAACA 60.818 55.000 0.00 0.00 0.00 3.33
2213 2324 1.021202 CTCTGGTCGGTTTGCAACAA 58.979 50.000 0.00 0.00 0.00 2.83
2214 2325 1.002468 CTCTGGTCGGTTTGCAACAAG 60.002 52.381 0.00 0.00 0.00 3.16
2215 2326 0.030638 CTGGTCGGTTTGCAACAAGG 59.969 55.000 0.00 0.00 0.00 3.61
2216 2327 1.362355 GGTCGGTTTGCAACAAGGG 59.638 57.895 0.00 0.00 0.00 3.95
2217 2328 1.362355 GTCGGTTTGCAACAAGGGG 59.638 57.895 0.00 0.00 0.00 4.79
2218 2329 2.028925 CGGTTTGCAACAAGGGGC 59.971 61.111 0.00 0.00 0.00 5.80
2219 2330 2.498056 CGGTTTGCAACAAGGGGCT 61.498 57.895 0.00 0.00 0.00 5.19
2220 2331 1.175983 CGGTTTGCAACAAGGGGCTA 61.176 55.000 0.00 0.00 0.00 3.93
2221 2332 0.603065 GGTTTGCAACAAGGGGCTAG 59.397 55.000 0.00 0.00 0.00 3.42
2222 2333 1.328279 GTTTGCAACAAGGGGCTAGT 58.672 50.000 0.00 0.00 0.00 2.57
2223 2334 1.686587 GTTTGCAACAAGGGGCTAGTT 59.313 47.619 0.00 0.00 0.00 2.24
2224 2335 2.080654 TTGCAACAAGGGGCTAGTTT 57.919 45.000 0.00 0.00 0.00 2.66
2225 2336 1.616159 TGCAACAAGGGGCTAGTTTC 58.384 50.000 0.00 0.00 0.00 2.78
2226 2337 1.133637 TGCAACAAGGGGCTAGTTTCA 60.134 47.619 0.00 0.00 0.00 2.69
2227 2338 1.541588 GCAACAAGGGGCTAGTTTCAG 59.458 52.381 0.00 0.00 0.00 3.02
2228 2339 2.814097 GCAACAAGGGGCTAGTTTCAGA 60.814 50.000 0.00 0.00 0.00 3.27
2229 2340 3.486383 CAACAAGGGGCTAGTTTCAGAA 58.514 45.455 0.00 0.00 0.00 3.02
2230 2341 3.141767 ACAAGGGGCTAGTTTCAGAAC 57.858 47.619 0.00 0.00 35.97 3.01
2231 2342 2.224793 ACAAGGGGCTAGTTTCAGAACC 60.225 50.000 0.00 0.00 36.39 3.62
2232 2343 0.992695 AGGGGCTAGTTTCAGAACCC 59.007 55.000 0.00 0.00 36.39 4.11
2233 2344 0.992695 GGGGCTAGTTTCAGAACCCT 59.007 55.000 5.89 0.00 36.39 4.34
2234 2345 1.354705 GGGGCTAGTTTCAGAACCCTT 59.645 52.381 5.89 0.00 36.39 3.95
2235 2346 2.225041 GGGGCTAGTTTCAGAACCCTTT 60.225 50.000 5.89 0.00 36.39 3.11
2236 2347 3.497332 GGGCTAGTTTCAGAACCCTTTT 58.503 45.455 0.00 0.00 36.39 2.27
2237 2348 3.895656 GGGCTAGTTTCAGAACCCTTTTT 59.104 43.478 0.00 0.00 36.39 1.94
2238 2349 4.262036 GGGCTAGTTTCAGAACCCTTTTTG 60.262 45.833 0.00 0.00 36.39 2.44
2239 2350 4.583073 GGCTAGTTTCAGAACCCTTTTTGA 59.417 41.667 0.00 0.00 36.39 2.69
2240 2351 5.068591 GGCTAGTTTCAGAACCCTTTTTGAA 59.931 40.000 0.00 0.00 34.79 2.69
2241 2352 6.406512 GGCTAGTTTCAGAACCCTTTTTGAAA 60.407 38.462 0.00 0.35 41.27 2.69
2246 2357 7.608308 TTTCAGAACCCTTTTTGAAACAATG 57.392 32.000 0.35 0.00 39.61 2.82
2247 2358 5.669477 TCAGAACCCTTTTTGAAACAATGG 58.331 37.500 0.00 0.00 0.00 3.16
2248 2359 5.423610 TCAGAACCCTTTTTGAAACAATGGA 59.576 36.000 0.00 0.00 0.00 3.41
2249 2360 6.099557 TCAGAACCCTTTTTGAAACAATGGAT 59.900 34.615 0.00 0.00 0.00 3.41
2250 2361 6.424812 CAGAACCCTTTTTGAAACAATGGATC 59.575 38.462 0.00 0.00 0.00 3.36
2251 2362 5.885449 ACCCTTTTTGAAACAATGGATCA 57.115 34.783 0.00 0.00 0.00 2.92
2252 2363 5.857268 ACCCTTTTTGAAACAATGGATCAG 58.143 37.500 0.00 0.00 0.00 2.90
2253 2364 5.366477 ACCCTTTTTGAAACAATGGATCAGT 59.634 36.000 0.00 0.00 0.00 3.41
2254 2365 6.126796 ACCCTTTTTGAAACAATGGATCAGTT 60.127 34.615 0.00 0.00 0.00 3.16
2255 2366 6.767423 CCCTTTTTGAAACAATGGATCAGTTT 59.233 34.615 0.00 0.00 38.10 2.66
2256 2367 7.041848 CCCTTTTTGAAACAATGGATCAGTTTC 60.042 37.037 17.87 17.87 46.86 2.78
2262 2373 5.972107 AACAATGGATCAGTTTCAGAAGG 57.028 39.130 0.00 0.00 0.00 3.46
2263 2374 4.990526 ACAATGGATCAGTTTCAGAAGGT 58.009 39.130 0.00 0.00 0.00 3.50
2264 2375 4.763793 ACAATGGATCAGTTTCAGAAGGTG 59.236 41.667 0.00 0.00 0.00 4.00
2265 2376 3.423539 TGGATCAGTTTCAGAAGGTGG 57.576 47.619 0.00 0.00 0.00 4.61
2266 2377 2.978978 TGGATCAGTTTCAGAAGGTGGA 59.021 45.455 0.00 0.00 0.00 4.02
2267 2378 3.588842 TGGATCAGTTTCAGAAGGTGGAT 59.411 43.478 0.00 0.00 0.00 3.41
2268 2379 4.782691 TGGATCAGTTTCAGAAGGTGGATA 59.217 41.667 0.00 0.00 0.00 2.59
2269 2380 5.119694 GGATCAGTTTCAGAAGGTGGATAC 58.880 45.833 0.00 0.00 0.00 2.24
2291 2402 3.617535 AGTTGGCTCCCGACTATCT 57.382 52.632 2.29 0.00 45.65 1.98
2292 2403 1.115467 AGTTGGCTCCCGACTATCTG 58.885 55.000 2.29 0.00 45.65 2.90
2293 2404 1.112113 GTTGGCTCCCGACTATCTGA 58.888 55.000 0.00 0.00 35.15 3.27
2294 2405 1.689273 GTTGGCTCCCGACTATCTGAT 59.311 52.381 0.00 0.00 35.15 2.90
2295 2406 2.088104 TGGCTCCCGACTATCTGATT 57.912 50.000 0.00 0.00 0.00 2.57
2296 2407 3.238788 TGGCTCCCGACTATCTGATTA 57.761 47.619 0.00 0.00 0.00 1.75
2297 2408 3.572642 TGGCTCCCGACTATCTGATTAA 58.427 45.455 0.00 0.00 0.00 1.40
2298 2409 3.574396 TGGCTCCCGACTATCTGATTAAG 59.426 47.826 0.00 0.00 0.00 1.85
2299 2410 3.827302 GGCTCCCGACTATCTGATTAAGA 59.173 47.826 0.00 0.00 39.94 2.10
2300 2411 4.082463 GGCTCCCGACTATCTGATTAAGAG 60.082 50.000 0.00 0.00 38.67 2.85
2301 2412 4.617298 GCTCCCGACTATCTGATTAAGAGC 60.617 50.000 0.00 2.78 38.67 4.09
2302 2413 3.827302 TCCCGACTATCTGATTAAGAGCC 59.173 47.826 0.00 0.00 38.67 4.70
2303 2414 3.056465 CCCGACTATCTGATTAAGAGCCC 60.056 52.174 0.00 0.00 38.67 5.19
2304 2415 3.574396 CCGACTATCTGATTAAGAGCCCA 59.426 47.826 0.00 0.00 38.67 5.36
2305 2416 4.221703 CCGACTATCTGATTAAGAGCCCAT 59.778 45.833 0.00 0.00 38.67 4.00
2306 2417 5.406649 CGACTATCTGATTAAGAGCCCATC 58.593 45.833 0.00 0.00 38.67 3.51
2307 2418 5.184864 CGACTATCTGATTAAGAGCCCATCT 59.815 44.000 0.00 0.00 38.67 2.90
2308 2419 6.375736 CGACTATCTGATTAAGAGCCCATCTA 59.624 42.308 0.00 0.00 38.67 1.98
2309 2420 7.094162 CGACTATCTGATTAAGAGCCCATCTAA 60.094 40.741 0.00 0.00 38.67 2.10
2310 2421 7.902087 ACTATCTGATTAAGAGCCCATCTAAC 58.098 38.462 0.00 0.00 38.67 2.34
2311 2422 5.201713 TCTGATTAAGAGCCCATCTAACG 57.798 43.478 0.00 0.00 37.23 3.18
2312 2423 4.039245 TCTGATTAAGAGCCCATCTAACGG 59.961 45.833 0.00 0.00 37.23 4.44
2313 2424 3.964688 TGATTAAGAGCCCATCTAACGGA 59.035 43.478 0.00 0.00 37.23 4.69
2314 2425 3.814005 TTAAGAGCCCATCTAACGGAC 57.186 47.619 0.00 0.00 37.23 4.79
2315 2426 0.831307 AAGAGCCCATCTAACGGACC 59.169 55.000 0.00 0.00 37.23 4.46
2316 2427 0.032017 AGAGCCCATCTAACGGACCT 60.032 55.000 0.00 0.00 36.10 3.85
2317 2428 0.105039 GAGCCCATCTAACGGACCTG 59.895 60.000 0.00 0.00 0.00 4.00
2318 2429 1.146263 GCCCATCTAACGGACCTGG 59.854 63.158 0.00 0.00 0.00 4.45
2319 2430 1.335132 GCCCATCTAACGGACCTGGA 61.335 60.000 0.00 0.00 0.00 3.86
2320 2431 0.753262 CCCATCTAACGGACCTGGAG 59.247 60.000 0.00 0.00 0.00 3.86
2321 2432 0.753262 CCATCTAACGGACCTGGAGG 59.247 60.000 0.00 0.00 42.17 4.30
2322 2433 0.105039 CATCTAACGGACCTGGAGGC 59.895 60.000 0.00 0.00 39.32 4.70
2323 2434 1.392710 ATCTAACGGACCTGGAGGCG 61.393 60.000 0.00 0.00 39.32 5.52
2324 2435 3.072468 TAACGGACCTGGAGGCGG 61.072 66.667 0.00 0.00 39.32 6.13
2345 2456 3.442996 GACACTGGTCCAAGATCGG 57.557 57.895 0.00 0.00 38.12 4.18
2346 2457 0.608640 GACACTGGTCCAAGATCGGT 59.391 55.000 0.00 0.00 38.12 4.69
2347 2458 0.608640 ACACTGGTCCAAGATCGGTC 59.391 55.000 0.00 0.00 28.63 4.79
2348 2459 0.458543 CACTGGTCCAAGATCGGTCG 60.459 60.000 0.00 0.00 28.63 4.79
2349 2460 1.141881 CTGGTCCAAGATCGGTCGG 59.858 63.158 0.00 0.00 0.00 4.79
2350 2461 1.605058 CTGGTCCAAGATCGGTCGGT 61.605 60.000 0.00 0.00 0.00 4.69
2351 2462 1.141234 GGTCCAAGATCGGTCGGTC 59.859 63.158 0.00 0.00 0.00 4.79
2352 2463 1.226603 GTCCAAGATCGGTCGGTCG 60.227 63.158 0.00 0.00 0.00 4.79
2353 2464 1.377594 TCCAAGATCGGTCGGTCGA 60.378 57.895 3.77 3.77 43.61 4.20
2354 2465 0.961857 TCCAAGATCGGTCGGTCGAA 60.962 55.000 5.26 0.00 42.69 3.71
2355 2466 0.525668 CCAAGATCGGTCGGTCGAAG 60.526 60.000 5.26 0.00 42.69 3.79
2356 2467 0.525668 CAAGATCGGTCGGTCGAAGG 60.526 60.000 5.26 0.00 42.69 3.46
2357 2468 1.664321 AAGATCGGTCGGTCGAAGGG 61.664 60.000 5.26 0.00 42.69 3.95
2358 2469 2.044650 ATCGGTCGGTCGAAGGGA 60.045 61.111 5.26 0.00 42.69 4.20
2359 2470 2.061182 GATCGGTCGGTCGAAGGGAG 62.061 65.000 5.26 0.00 42.69 4.30
2360 2471 2.833604 ATCGGTCGGTCGAAGGGAGT 62.834 60.000 5.26 0.00 42.69 3.85
2361 2472 2.883621 GGTCGGTCGAAGGGAGTC 59.116 66.667 0.00 0.00 0.00 3.36
2362 2473 1.975407 GGTCGGTCGAAGGGAGTCA 60.975 63.158 0.00 0.00 0.00 3.41
2363 2474 1.321074 GGTCGGTCGAAGGGAGTCAT 61.321 60.000 0.00 0.00 0.00 3.06
2364 2475 0.531200 GTCGGTCGAAGGGAGTCATT 59.469 55.000 0.00 0.00 0.00 2.57
2365 2476 1.067071 GTCGGTCGAAGGGAGTCATTT 60.067 52.381 0.00 0.00 0.00 2.32
2366 2477 1.621814 TCGGTCGAAGGGAGTCATTTT 59.378 47.619 0.00 0.00 0.00 1.82
2367 2478 2.038033 TCGGTCGAAGGGAGTCATTTTT 59.962 45.455 0.00 0.00 0.00 1.94
2368 2479 2.415512 CGGTCGAAGGGAGTCATTTTTC 59.584 50.000 0.00 0.00 0.00 2.29
2369 2480 3.408634 GGTCGAAGGGAGTCATTTTTCA 58.591 45.455 0.00 0.00 0.00 2.69
2411 2522 4.954118 ACCCACCTCGTCCTGCCA 62.954 66.667 0.00 0.00 0.00 4.92
2421 2532 3.313526 CCTCGTCCTGCCATCTTTTTATG 59.686 47.826 0.00 0.00 0.00 1.90
2432 2543 7.222872 TGCCATCTTTTTATGTGGAAAACAAT 58.777 30.769 0.00 0.00 43.61 2.71
2433 2544 8.370940 TGCCATCTTTTTATGTGGAAAACAATA 58.629 29.630 0.00 0.00 43.61 1.90
2434 2545 9.382275 GCCATCTTTTTATGTGGAAAACAATAT 57.618 29.630 0.00 0.00 43.61 1.28
2493 2812 1.153168 TTTCTATGGGCGCAGGAGC 60.153 57.895 10.83 0.00 37.42 4.70
2527 2846 4.760204 GCCAAGCTAAGTTTTTCTAGGACA 59.240 41.667 0.00 0.00 0.00 4.02
2629 2950 5.814705 AGTTATGCATAGAAGACAAGCTCAC 59.185 40.000 6.50 0.00 0.00 3.51
2665 2986 6.845302 TGAGTATGTTGTAGTTACGGTAGTG 58.155 40.000 0.00 0.00 0.00 2.74
2667 2988 4.524316 ATGTTGTAGTTACGGTAGTGCA 57.476 40.909 0.00 0.00 0.00 4.57
2668 2989 4.319139 TGTTGTAGTTACGGTAGTGCAA 57.681 40.909 0.00 0.95 0.00 4.08
2674 2995 8.445493 GTTGTAGTTACGGTAGTGCAATTTAAT 58.555 33.333 0.00 0.00 0.00 1.40
2704 3025 9.498176 TTTTAGACAACAAAATACTACTCCCTC 57.502 33.333 0.00 0.00 0.00 4.30
2705 3026 6.051179 AGACAACAAAATACTACTCCCTCC 57.949 41.667 0.00 0.00 0.00 4.30
2706 3027 4.828829 ACAACAAAATACTACTCCCTCCG 58.171 43.478 0.00 0.00 0.00 4.63
2707 3028 4.285260 ACAACAAAATACTACTCCCTCCGT 59.715 41.667 0.00 0.00 0.00 4.69
2708 3029 5.221783 ACAACAAAATACTACTCCCTCCGTT 60.222 40.000 0.00 0.00 0.00 4.44
2709 3030 5.082251 ACAAAATACTACTCCCTCCGTTC 57.918 43.478 0.00 0.00 0.00 3.95
2710 3031 4.081254 ACAAAATACTACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
2711 3032 3.393426 AATACTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
2712 3033 2.134789 TACTACTCCCTCCGTTCCAC 57.865 55.000 0.00 0.00 0.00 4.02
2713 3034 0.113776 ACTACTCCCTCCGTTCCACA 59.886 55.000 0.00 0.00 0.00 4.17
2714 3035 1.263356 CTACTCCCTCCGTTCCACAA 58.737 55.000 0.00 0.00 0.00 3.33
2715 3036 1.831736 CTACTCCCTCCGTTCCACAAT 59.168 52.381 0.00 0.00 0.00 2.71
2716 3037 0.324943 ACTCCCTCCGTTCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
2717 3038 0.324943 CTCCCTCCGTTCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
2718 3039 1.553248 CTCCCTCCGTTCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
2719 3040 1.979308 TCCCTCCGTTCCACAATGTAA 59.021 47.619 0.00 0.00 0.00 2.41
2720 3041 2.027561 TCCCTCCGTTCCACAATGTAAG 60.028 50.000 0.00 0.00 0.00 2.34
2721 3042 2.027561 CCCTCCGTTCCACAATGTAAGA 60.028 50.000 0.00 0.00 0.00 2.10
2722 3043 3.000727 CCTCCGTTCCACAATGTAAGAC 58.999 50.000 0.00 0.00 0.00 3.01
2723 3044 2.666508 CTCCGTTCCACAATGTAAGACG 59.333 50.000 7.35 7.35 0.00 4.18
2724 3045 2.036217 TCCGTTCCACAATGTAAGACGT 59.964 45.455 11.54 0.00 0.00 4.34
2725 3046 2.803956 CCGTTCCACAATGTAAGACGTT 59.196 45.455 11.54 0.00 0.00 3.99
2726 3047 3.249080 CCGTTCCACAATGTAAGACGTTT 59.751 43.478 11.54 0.00 0.00 3.60
2727 3048 4.260866 CCGTTCCACAATGTAAGACGTTTT 60.261 41.667 11.54 0.00 0.00 2.43
2728 3049 5.267776 CGTTCCACAATGTAAGACGTTTTT 58.732 37.500 0.00 0.00 0.00 1.94
2772 3093 4.950434 AACGTTTTACATTATGGGACGG 57.050 40.909 0.00 0.00 33.74 4.79
2773 3094 4.205065 ACGTTTTACATTATGGGACGGA 57.795 40.909 13.17 0.00 33.74 4.69
2774 3095 4.186159 ACGTTTTACATTATGGGACGGAG 58.814 43.478 13.17 0.00 33.74 4.63
2775 3096 3.558418 CGTTTTACATTATGGGACGGAGG 59.442 47.826 0.00 0.00 0.00 4.30
2776 3097 3.849563 TTTACATTATGGGACGGAGGG 57.150 47.619 0.00 0.00 0.00 4.30
2777 3098 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2778 3099 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2779 3100 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2780 3101 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2781 3102 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2782 3103 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
2783 3104 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.00 0.00 0.00 1.82
2784 3105 0.257039 TGGGACGGAGGGAGTACTAC 59.743 60.000 0.00 0.00 0.00 2.73
2785 3106 0.550432 GGGACGGAGGGAGTACTACT 59.450 60.000 4.77 1.85 0.00 2.57
2786 3107 1.771255 GGGACGGAGGGAGTACTACTA 59.229 57.143 4.77 0.00 0.00 1.82
2787 3108 2.224499 GGGACGGAGGGAGTACTACTAG 60.224 59.091 4.77 3.31 0.00 2.57
2838 3160 6.433093 AGTTCGGTATACAATGCCTTTCTTTT 59.567 34.615 5.01 0.00 32.25 2.27
2841 3163 6.093495 TCGGTATACAATGCCTTTCTTTTCAG 59.907 38.462 5.01 0.00 32.25 3.02
2967 3289 1.204941 GCACCAGAGATACGTGAAGGT 59.795 52.381 0.00 0.00 0.00 3.50
3165 3487 4.525100 CGAATGGGTTTAGAAGGGGAAAAA 59.475 41.667 0.00 0.00 0.00 1.94
3237 3559 3.818180 GGAGTCTCCTAAGTATCGACCA 58.182 50.000 12.02 0.00 32.53 4.02
3252 3574 4.610605 TCGACCAACAATGAAAGAGGTA 57.389 40.909 0.00 0.00 0.00 3.08
3362 3684 5.777850 TGACTATGCCATGATCAATTTGG 57.222 39.130 9.15 9.15 0.00 3.28
3494 3818 4.963373 TCGAGTTGTACAAGGAAAATGGA 58.037 39.130 8.98 0.00 0.00 3.41
3561 3887 4.878439 TGTACACACACCACTACTCAATC 58.122 43.478 0.00 0.00 0.00 2.67
3565 3891 4.591498 ACACACACCACTACTCAATCCTAA 59.409 41.667 0.00 0.00 0.00 2.69
3598 3924 6.825721 AGTAGGCATCTTTCTTCATTACCAAG 59.174 38.462 0.00 0.00 0.00 3.61
3796 4122 1.802365 GCCTCTACTAGACTAGCTCGC 59.198 57.143 9.52 1.30 0.00 5.03
3893 4220 2.269023 TGATGTGATGGACAAGACCCT 58.731 47.619 0.00 0.00 38.36 4.34
3901 4228 2.048601 TGGACAAGACCCTTCCGTTAA 58.951 47.619 0.00 0.00 31.38 2.01
3922 4249 8.487970 CGTTAACTTAGCATAATGATCGTTCAT 58.512 33.333 2.72 3.07 44.62 2.57
4121 4452 6.540438 TTAGGATTTGTCACTCCGAGTATT 57.460 37.500 0.00 0.00 36.62 1.89
4122 4453 7.649533 TTAGGATTTGTCACTCCGAGTATTA 57.350 36.000 0.00 0.00 36.62 0.98
4168 4499 6.578944 TCGGTAATACACATCATAAGCTTGT 58.421 36.000 9.86 0.00 0.00 3.16
4203 4534 5.997384 AAGGAGTTAGTTACGAGGTGATT 57.003 39.130 0.00 0.00 0.00 2.57
4263 4594 8.597227 CGAGATTGAACTAGGTATAGAGATACG 58.403 40.741 0.00 0.00 39.16 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 0.734889 GGCATGTCCCAGTTCAATCG 59.265 55.000 0.00 0.00 0.00 3.34
173 198 2.425668 AGCAACACCGTAAGCAAAAACT 59.574 40.909 0.00 0.00 0.00 2.66
201 226 0.033504 TTCACGTCAGAGAGCCCAAC 59.966 55.000 0.00 0.00 0.00 3.77
203 228 0.532573 GATTCACGTCAGAGAGCCCA 59.467 55.000 0.00 0.00 0.00 5.36
229 254 1.607628 CAGCATCAGAGGCCATAAAGC 59.392 52.381 5.01 1.12 0.00 3.51
230 255 2.928334 ACAGCATCAGAGGCCATAAAG 58.072 47.619 5.01 0.00 0.00 1.85
231 256 3.741075 CGTACAGCATCAGAGGCCATAAA 60.741 47.826 5.01 0.00 0.00 1.40
232 257 2.224042 CGTACAGCATCAGAGGCCATAA 60.224 50.000 5.01 0.00 0.00 1.90
233 258 1.341209 CGTACAGCATCAGAGGCCATA 59.659 52.381 5.01 0.00 0.00 2.74
234 259 0.105593 CGTACAGCATCAGAGGCCAT 59.894 55.000 5.01 0.00 0.00 4.40
325 350 4.494350 TTCACACGTTCTACTAGGTGTC 57.506 45.455 0.00 0.00 43.13 3.67
381 412 4.808414 TTCACATCCACAGAGAGGTAAG 57.192 45.455 0.00 0.00 0.00 2.34
415 446 1.334149 GGCAGACTTCGAAGCAAACAC 60.334 52.381 24.86 9.64 0.00 3.32
525 556 4.707448 AGGTTCACGAGATGAGACTATTGT 59.293 41.667 0.00 0.00 38.99 2.71
526 557 5.039984 CAGGTTCACGAGATGAGACTATTG 58.960 45.833 0.00 0.00 38.99 1.90
528 559 4.274147 ACAGGTTCACGAGATGAGACTAT 58.726 43.478 0.00 0.00 38.99 2.12
529 560 3.687125 ACAGGTTCACGAGATGAGACTA 58.313 45.455 0.00 0.00 38.99 2.59
530 561 2.520069 ACAGGTTCACGAGATGAGACT 58.480 47.619 0.00 0.00 38.99 3.24
531 562 3.305398 AACAGGTTCACGAGATGAGAC 57.695 47.619 0.00 0.00 38.99 3.36
585 624 5.358298 AACTTTGTAAGAAATCAGGACGC 57.642 39.130 0.00 0.00 0.00 5.19
586 625 8.306680 TCTTAACTTTGTAAGAAATCAGGACG 57.693 34.615 0.00 0.00 37.20 4.79
608 647 6.746120 ACGTACACTGTACTTCTTGATTCTT 58.254 36.000 15.76 0.00 0.00 2.52
611 650 6.091437 GCTACGTACACTGTACTTCTTGATT 58.909 40.000 15.76 0.00 0.00 2.57
629 668 6.170506 TGGAATCTGAACTTATTTGCTACGT 58.829 36.000 0.00 0.00 0.00 3.57
641 680 1.745141 GCGATGGCTGGAATCTGAACT 60.745 52.381 0.00 0.00 35.83 3.01
644 683 0.252761 TTGCGATGGCTGGAATCTGA 59.747 50.000 0.15 0.00 40.82 3.27
651 690 0.099436 GCTTAGTTTGCGATGGCTGG 59.901 55.000 0.15 0.00 40.82 4.85
707 746 1.064952 CTTTGTGTTCGACGGGCTTTT 59.935 47.619 0.00 0.00 0.00 2.27
838 927 4.127171 GACTTTGACTGCTGACTAACCAA 58.873 43.478 0.00 0.00 0.00 3.67
842 931 4.345257 AGGAAGACTTTGACTGCTGACTAA 59.655 41.667 0.00 0.00 0.00 2.24
876 965 2.462503 GCGGATTGCGGTTGACTAA 58.537 52.632 0.00 0.00 0.00 2.24
980 1075 3.717294 CTGCAGGGCCGGGTAACT 61.717 66.667 5.57 0.00 0.00 2.24
1005 1100 1.669115 CAGCGCTTGGTACACAGCT 60.669 57.895 7.50 4.76 41.81 4.24
1007 1102 3.566261 CCAGCGCTTGGTACACAG 58.434 61.111 7.50 0.00 42.41 3.66
1134 1229 0.397254 AGATTGGGAGGGACGACGAT 60.397 55.000 0.00 0.00 0.00 3.73
1802 1897 5.796424 AGTGAAATGATTTGCAAGAAGGT 57.204 34.783 0.00 0.00 0.00 3.50
1818 1913 7.219917 CGCAAAATGTAAACTCTTGAAGTGAAA 59.780 33.333 0.77 0.00 38.58 2.69
1827 1922 4.870363 ACATGCGCAAAATGTAAACTCTT 58.130 34.783 17.11 0.00 36.50 2.85
1834 1929 4.443725 CACTGAAAACATGCGCAAAATGTA 59.556 37.500 17.11 0.00 37.27 2.29
1874 1985 3.187842 GTGCTCTAAAAGGTTTACGGGTG 59.812 47.826 0.00 0.00 0.00 4.61
1953 2064 2.093341 AGGCGGCGGATCTTTTAAACTA 60.093 45.455 9.78 0.00 0.00 2.24
1954 2065 1.092348 GGCGGCGGATCTTTTAAACT 58.908 50.000 9.78 0.00 0.00 2.66
1955 2066 1.092348 AGGCGGCGGATCTTTTAAAC 58.908 50.000 9.78 0.00 0.00 2.01
1956 2067 2.557317 CTAGGCGGCGGATCTTTTAAA 58.443 47.619 9.78 0.00 0.00 1.52
1957 2068 1.808891 GCTAGGCGGCGGATCTTTTAA 60.809 52.381 9.78 0.00 0.00 1.52
1958 2069 0.249741 GCTAGGCGGCGGATCTTTTA 60.250 55.000 9.78 0.00 0.00 1.52
1959 2070 1.523938 GCTAGGCGGCGGATCTTTT 60.524 57.895 9.78 0.00 0.00 2.27
1960 2071 2.109181 GCTAGGCGGCGGATCTTT 59.891 61.111 9.78 0.00 0.00 2.52
1970 2081 7.698087 GTCATATCTGATAGCTCGCTAGGCG 62.698 52.000 5.52 5.52 42.92 5.52
1971 2082 3.629855 TCATATCTGATAGCTCGCTAGGC 59.370 47.826 4.81 0.56 31.45 3.93
1972 2083 4.637977 TGTCATATCTGATAGCTCGCTAGG 59.362 45.833 4.81 0.00 32.98 3.02
1973 2084 5.123027 TGTGTCATATCTGATAGCTCGCTAG 59.877 44.000 4.81 0.00 32.98 3.42
1974 2085 5.003804 TGTGTCATATCTGATAGCTCGCTA 58.996 41.667 0.53 0.53 32.98 4.26
1975 2086 3.823304 TGTGTCATATCTGATAGCTCGCT 59.177 43.478 3.48 0.00 32.98 4.93
1976 2087 4.166187 TGTGTCATATCTGATAGCTCGC 57.834 45.455 3.48 3.73 32.98 5.03
1977 2088 5.061933 GCATTGTGTCATATCTGATAGCTCG 59.938 44.000 3.48 0.00 32.98 5.03
1978 2089 5.930569 TGCATTGTGTCATATCTGATAGCTC 59.069 40.000 3.48 0.00 32.98 4.09
1979 2090 5.861727 TGCATTGTGTCATATCTGATAGCT 58.138 37.500 3.48 0.00 32.98 3.32
1980 2091 6.369005 GTTGCATTGTGTCATATCTGATAGC 58.631 40.000 3.48 0.00 32.98 2.97
1981 2092 6.201615 ACGTTGCATTGTGTCATATCTGATAG 59.798 38.462 3.48 0.00 32.98 2.08
1982 2093 6.048509 ACGTTGCATTGTGTCATATCTGATA 58.951 36.000 0.00 0.00 32.98 2.15
1983 2094 4.877823 ACGTTGCATTGTGTCATATCTGAT 59.122 37.500 0.00 0.00 32.98 2.90
1984 2095 4.252878 ACGTTGCATTGTGTCATATCTGA 58.747 39.130 0.00 0.00 0.00 3.27
1985 2096 4.330894 AGACGTTGCATTGTGTCATATCTG 59.669 41.667 9.75 0.00 33.83 2.90
1986 2097 4.507710 AGACGTTGCATTGTGTCATATCT 58.492 39.130 9.75 0.00 33.83 1.98
1987 2098 4.864916 AGACGTTGCATTGTGTCATATC 57.135 40.909 9.75 0.00 33.83 1.63
1988 2099 5.412594 AGAAAGACGTTGCATTGTGTCATAT 59.587 36.000 9.75 0.00 33.83 1.78
1989 2100 4.754618 AGAAAGACGTTGCATTGTGTCATA 59.245 37.500 9.75 0.00 33.83 2.15
1990 2101 3.565482 AGAAAGACGTTGCATTGTGTCAT 59.435 39.130 9.75 0.00 33.83 3.06
1991 2102 2.942376 AGAAAGACGTTGCATTGTGTCA 59.058 40.909 9.75 0.00 33.83 3.58
1992 2103 3.248602 AGAGAAAGACGTTGCATTGTGTC 59.751 43.478 0.00 0.00 0.00 3.67
1993 2104 3.206150 AGAGAAAGACGTTGCATTGTGT 58.794 40.909 0.00 0.00 0.00 3.72
1994 2105 3.885484 AGAGAAAGACGTTGCATTGTG 57.115 42.857 0.00 0.00 0.00 3.33
1995 2106 3.746492 GGTAGAGAAAGACGTTGCATTGT 59.254 43.478 0.00 0.00 0.00 2.71
1996 2107 3.997021 AGGTAGAGAAAGACGTTGCATTG 59.003 43.478 0.00 0.00 0.00 2.82
1997 2108 4.273148 AGGTAGAGAAAGACGTTGCATT 57.727 40.909 0.00 0.00 0.00 3.56
1998 2109 3.963428 AGGTAGAGAAAGACGTTGCAT 57.037 42.857 0.00 0.00 0.00 3.96
1999 2110 3.390135 CAAGGTAGAGAAAGACGTTGCA 58.610 45.455 0.00 0.00 35.43 4.08
2001 2112 3.390135 TGCAAGGTAGAGAAAGACGTTG 58.610 45.455 0.00 0.00 41.87 4.10
2002 2113 3.746045 TGCAAGGTAGAGAAAGACGTT 57.254 42.857 0.00 0.00 0.00 3.99
2003 2114 3.181469 TGTTGCAAGGTAGAGAAAGACGT 60.181 43.478 0.00 0.00 0.00 4.34
2004 2115 3.390135 TGTTGCAAGGTAGAGAAAGACG 58.610 45.455 0.00 0.00 0.00 4.18
2005 2116 5.278022 CCTTTGTTGCAAGGTAGAGAAAGAC 60.278 44.000 0.00 0.00 0.00 3.01
2006 2117 4.821805 CCTTTGTTGCAAGGTAGAGAAAGA 59.178 41.667 0.00 0.00 0.00 2.52
2007 2118 4.580580 ACCTTTGTTGCAAGGTAGAGAAAG 59.419 41.667 6.00 1.64 46.87 2.62
2008 2119 4.532834 ACCTTTGTTGCAAGGTAGAGAAA 58.467 39.130 6.00 0.00 46.87 2.52
2009 2120 4.164843 ACCTTTGTTGCAAGGTAGAGAA 57.835 40.909 6.00 0.00 46.87 2.87
2010 2121 3.857157 ACCTTTGTTGCAAGGTAGAGA 57.143 42.857 6.00 0.00 46.87 3.10
2016 2127 3.063861 GCAAAAAGACCTTTGTTGCAAGG 59.936 43.478 22.35 0.00 41.09 3.61
2017 2128 3.242059 CGCAAAAAGACCTTTGTTGCAAG 60.242 43.478 24.33 14.88 41.26 4.01
2018 2129 2.670414 CGCAAAAAGACCTTTGTTGCAA 59.330 40.909 24.33 0.00 41.26 4.08
2019 2130 2.266554 CGCAAAAAGACCTTTGTTGCA 58.733 42.857 24.33 0.00 41.26 4.08
2020 2131 1.592543 CCGCAAAAAGACCTTTGTTGC 59.407 47.619 19.97 19.97 39.81 4.17
2021 2132 3.157932 TCCGCAAAAAGACCTTTGTTG 57.842 42.857 0.00 4.94 38.35 3.33
2022 2133 3.878160 TTCCGCAAAAAGACCTTTGTT 57.122 38.095 0.00 0.00 38.35 2.83
2023 2134 3.878160 TTTCCGCAAAAAGACCTTTGT 57.122 38.095 0.00 0.00 38.35 2.83
2024 2135 7.290118 CAAATATTTCCGCAAAAAGACCTTTG 58.710 34.615 0.00 0.00 38.97 2.77
2025 2136 6.073276 GCAAATATTTCCGCAAAAAGACCTTT 60.073 34.615 0.00 0.00 0.00 3.11
2026 2137 5.408299 GCAAATATTTCCGCAAAAAGACCTT 59.592 36.000 0.00 0.00 0.00 3.50
2027 2138 4.929211 GCAAATATTTCCGCAAAAAGACCT 59.071 37.500 0.00 0.00 0.00 3.85
2028 2139 4.688413 TGCAAATATTTCCGCAAAAAGACC 59.312 37.500 9.98 0.00 0.00 3.85
2029 2140 5.837586 TGCAAATATTTCCGCAAAAAGAC 57.162 34.783 9.98 0.00 0.00 3.01
2030 2141 5.107683 CGTTGCAAATATTTCCGCAAAAAGA 60.108 36.000 21.07 3.59 45.19 2.52
2031 2142 5.072169 CGTTGCAAATATTTCCGCAAAAAG 58.928 37.500 21.07 14.27 45.19 2.27
2032 2143 4.084328 CCGTTGCAAATATTTCCGCAAAAA 60.084 37.500 21.07 4.17 45.19 1.94
2033 2144 3.430218 CCGTTGCAAATATTTCCGCAAAA 59.570 39.130 21.07 4.74 45.19 2.44
2034 2145 2.989840 CCGTTGCAAATATTTCCGCAAA 59.010 40.909 21.07 8.49 45.19 3.68
2035 2146 2.229062 TCCGTTGCAAATATTTCCGCAA 59.771 40.909 17.42 17.42 41.79 4.85
2036 2147 1.813178 TCCGTTGCAAATATTTCCGCA 59.187 42.857 0.00 8.66 0.00 5.69
2037 2148 2.450160 CTCCGTTGCAAATATTTCCGC 58.550 47.619 0.00 0.58 0.00 5.54
2038 2149 2.422127 ACCTCCGTTGCAAATATTTCCG 59.578 45.455 0.00 0.00 0.00 4.30
2039 2150 4.450082 AACCTCCGTTGCAAATATTTCC 57.550 40.909 0.00 0.00 0.00 3.13
2040 2151 6.560711 ACATAACCTCCGTTGCAAATATTTC 58.439 36.000 0.00 0.00 33.17 2.17
2041 2152 6.524101 ACATAACCTCCGTTGCAAATATTT 57.476 33.333 0.00 0.00 33.17 1.40
2042 2153 6.071616 ACAACATAACCTCCGTTGCAAATATT 60.072 34.615 0.00 0.00 42.98 1.28
2043 2154 5.417580 ACAACATAACCTCCGTTGCAAATAT 59.582 36.000 0.00 0.00 42.98 1.28
2044 2155 4.762765 ACAACATAACCTCCGTTGCAAATA 59.237 37.500 0.00 0.00 42.98 1.40
2045 2156 3.572255 ACAACATAACCTCCGTTGCAAAT 59.428 39.130 0.00 0.00 42.98 2.32
2046 2157 2.952978 ACAACATAACCTCCGTTGCAAA 59.047 40.909 0.00 0.00 42.98 3.68
2047 2158 2.292016 CACAACATAACCTCCGTTGCAA 59.708 45.455 0.00 0.00 42.98 4.08
2048 2159 1.876799 CACAACATAACCTCCGTTGCA 59.123 47.619 0.00 0.00 42.98 4.08
2049 2160 1.401018 GCACAACATAACCTCCGTTGC 60.401 52.381 0.00 0.00 42.98 4.17
2050 2161 2.151202 AGCACAACATAACCTCCGTTG 58.849 47.619 0.00 0.00 44.38 4.10
2051 2162 2.038557 AGAGCACAACATAACCTCCGTT 59.961 45.455 0.00 0.00 35.90 4.44
2052 2163 1.623811 AGAGCACAACATAACCTCCGT 59.376 47.619 0.00 0.00 0.00 4.69
2053 2164 2.386661 AGAGCACAACATAACCTCCG 57.613 50.000 0.00 0.00 0.00 4.63
2054 2165 5.453567 AAAAAGAGCACAACATAACCTCC 57.546 39.130 0.00 0.00 0.00 4.30
2080 2191 3.988379 ATCTCGCAACACAAACATGTT 57.012 38.095 4.92 4.92 43.67 2.71
2081 2192 3.988379 AATCTCGCAACACAAACATGT 57.012 38.095 0.00 0.00 0.00 3.21
2082 2193 5.640218 AAAAATCTCGCAACACAAACATG 57.360 34.783 0.00 0.00 0.00 3.21
2105 2216 4.574013 GCAACATGTCCCATGTTTCAAAAA 59.426 37.500 17.45 0.00 39.94 1.94
2106 2217 4.125703 GCAACATGTCCCATGTTTCAAAA 58.874 39.130 17.45 0.00 39.94 2.44
2107 2218 3.133542 TGCAACATGTCCCATGTTTCAAA 59.866 39.130 17.45 4.07 39.94 2.69
2108 2219 2.697229 TGCAACATGTCCCATGTTTCAA 59.303 40.909 17.45 6.10 39.94 2.69
2109 2220 2.296752 CTGCAACATGTCCCATGTTTCA 59.703 45.455 17.45 17.33 39.94 2.69
2110 2221 2.557924 TCTGCAACATGTCCCATGTTTC 59.442 45.455 17.45 14.19 39.94 2.78
2111 2222 2.596346 TCTGCAACATGTCCCATGTTT 58.404 42.857 17.45 3.80 39.94 2.83
2112 2223 2.291209 TCTGCAACATGTCCCATGTT 57.709 45.000 15.00 15.00 42.38 2.71
2113 2224 2.519771 ATCTGCAACATGTCCCATGT 57.480 45.000 0.00 4.08 0.00 3.21
2114 2225 3.880047 AAATCTGCAACATGTCCCATG 57.120 42.857 0.00 2.77 0.00 3.66
2115 2226 4.895668 AAAAATCTGCAACATGTCCCAT 57.104 36.364 0.00 0.00 0.00 4.00
2143 2254 5.779529 AAATCTGCAACAAGACTCATGTT 57.220 34.783 0.00 0.00 41.50 2.71
2144 2255 5.779529 AAAATCTGCAACAAGACTCATGT 57.220 34.783 0.00 0.00 0.00 3.21
2165 2276 2.362397 TCAACAGCGCCCATGTTAAAAA 59.638 40.909 12.49 0.00 38.80 1.94
2166 2277 1.957177 TCAACAGCGCCCATGTTAAAA 59.043 42.857 12.49 0.73 38.80 1.52
2167 2278 1.610363 TCAACAGCGCCCATGTTAAA 58.390 45.000 12.49 2.91 38.80 1.52
2168 2279 1.610363 TTCAACAGCGCCCATGTTAA 58.390 45.000 12.49 0.00 38.80 2.01
2169 2280 1.742831 GATTCAACAGCGCCCATGTTA 59.257 47.619 12.49 0.26 38.80 2.41
2170 2281 0.527565 GATTCAACAGCGCCCATGTT 59.472 50.000 2.29 5.59 41.47 2.71
2171 2282 0.322816 AGATTCAACAGCGCCCATGT 60.323 50.000 2.29 0.00 0.00 3.21
2172 2283 1.600957 CTAGATTCAACAGCGCCCATG 59.399 52.381 2.29 0.00 0.00 3.66
2173 2284 1.959042 CTAGATTCAACAGCGCCCAT 58.041 50.000 2.29 0.00 0.00 4.00
2174 2285 0.744414 GCTAGATTCAACAGCGCCCA 60.744 55.000 2.29 0.00 0.00 5.36
2175 2286 1.440145 GGCTAGATTCAACAGCGCCC 61.440 60.000 2.29 0.00 36.12 6.13
2176 2287 0.462759 AGGCTAGATTCAACAGCGCC 60.463 55.000 2.29 0.00 36.12 6.53
2177 2288 0.933796 GAGGCTAGATTCAACAGCGC 59.066 55.000 0.00 0.00 36.12 5.92
2178 2289 2.200067 CAGAGGCTAGATTCAACAGCG 58.800 52.381 0.00 0.00 36.12 5.18
2179 2290 2.093235 ACCAGAGGCTAGATTCAACAGC 60.093 50.000 0.00 0.00 34.48 4.40
2180 2291 3.736433 CGACCAGAGGCTAGATTCAACAG 60.736 52.174 0.00 0.00 0.00 3.16
2181 2292 2.166459 CGACCAGAGGCTAGATTCAACA 59.834 50.000 0.00 0.00 0.00 3.33
2182 2293 2.482142 CCGACCAGAGGCTAGATTCAAC 60.482 54.545 0.00 0.00 0.00 3.18
2183 2294 1.757118 CCGACCAGAGGCTAGATTCAA 59.243 52.381 0.00 0.00 0.00 2.69
2184 2295 1.342076 ACCGACCAGAGGCTAGATTCA 60.342 52.381 0.00 0.00 0.00 2.57
2185 2296 1.404843 ACCGACCAGAGGCTAGATTC 58.595 55.000 0.00 0.00 0.00 2.52
2186 2297 1.867363 AACCGACCAGAGGCTAGATT 58.133 50.000 0.00 0.00 0.00 2.40
2187 2298 1.482593 CAAACCGACCAGAGGCTAGAT 59.517 52.381 0.00 0.00 0.00 1.98
2188 2299 0.895530 CAAACCGACCAGAGGCTAGA 59.104 55.000 0.00 0.00 0.00 2.43
2189 2300 0.741221 GCAAACCGACCAGAGGCTAG 60.741 60.000 0.00 0.00 0.00 3.42
2190 2301 1.295423 GCAAACCGACCAGAGGCTA 59.705 57.895 0.00 0.00 0.00 3.93
2191 2302 2.032681 GCAAACCGACCAGAGGCT 59.967 61.111 0.00 0.00 0.00 4.58
2192 2303 1.896660 TTGCAAACCGACCAGAGGC 60.897 57.895 0.00 0.00 0.00 4.70
2193 2304 1.949257 GTTGCAAACCGACCAGAGG 59.051 57.895 0.00 0.00 42.21 3.69
2204 2315 2.080654 AACTAGCCCCTTGTTGCAAA 57.919 45.000 0.00 0.00 29.39 3.68
2205 2316 1.960689 GAAACTAGCCCCTTGTTGCAA 59.039 47.619 0.00 0.00 30.79 4.08
2206 2317 1.133637 TGAAACTAGCCCCTTGTTGCA 60.134 47.619 0.00 0.00 33.66 4.08
2207 2318 1.541588 CTGAAACTAGCCCCTTGTTGC 59.458 52.381 0.00 0.00 30.79 4.17
2208 2319 3.140325 TCTGAAACTAGCCCCTTGTTG 57.860 47.619 0.00 0.00 30.79 3.33
2209 2320 3.487372 GTTCTGAAACTAGCCCCTTGTT 58.513 45.455 0.00 0.00 31.53 2.83
2210 2321 2.224793 GGTTCTGAAACTAGCCCCTTGT 60.225 50.000 0.00 0.00 35.61 3.16
2211 2322 2.437413 GGTTCTGAAACTAGCCCCTTG 58.563 52.381 0.00 0.00 35.61 3.61
2212 2323 1.354705 GGGTTCTGAAACTAGCCCCTT 59.645 52.381 5.29 0.00 35.61 3.95
2213 2324 0.992695 GGGTTCTGAAACTAGCCCCT 59.007 55.000 5.29 0.00 35.61 4.79
2214 2325 0.992695 AGGGTTCTGAAACTAGCCCC 59.007 55.000 5.29 4.50 36.86 5.80
2215 2326 2.881111 AAGGGTTCTGAAACTAGCCC 57.119 50.000 5.29 5.22 35.61 5.19
2216 2327 4.583073 TCAAAAAGGGTTCTGAAACTAGCC 59.417 41.667 5.29 0.00 35.61 3.93
2217 2328 5.767816 TCAAAAAGGGTTCTGAAACTAGC 57.232 39.130 5.29 0.00 35.61 3.42
2222 2333 6.597280 CCATTGTTTCAAAAAGGGTTCTGAAA 59.403 34.615 0.00 0.00 35.88 2.69
2223 2334 6.070538 TCCATTGTTTCAAAAAGGGTTCTGAA 60.071 34.615 0.00 0.00 0.00 3.02
2224 2335 5.423610 TCCATTGTTTCAAAAAGGGTTCTGA 59.576 36.000 0.00 0.00 0.00 3.27
2225 2336 5.669477 TCCATTGTTTCAAAAAGGGTTCTG 58.331 37.500 0.00 0.00 0.00 3.02
2226 2337 5.948742 TCCATTGTTTCAAAAAGGGTTCT 57.051 34.783 0.00 0.00 0.00 3.01
2227 2338 6.287525 TGATCCATTGTTTCAAAAAGGGTTC 58.712 36.000 0.00 0.00 0.00 3.62
2228 2339 6.126796 ACTGATCCATTGTTTCAAAAAGGGTT 60.127 34.615 0.00 0.00 0.00 4.11
2229 2340 5.366477 ACTGATCCATTGTTTCAAAAAGGGT 59.634 36.000 0.00 0.00 0.00 4.34
2230 2341 5.857268 ACTGATCCATTGTTTCAAAAAGGG 58.143 37.500 0.00 0.00 0.00 3.95
2231 2342 7.790823 AAACTGATCCATTGTTTCAAAAAGG 57.209 32.000 0.00 0.00 29.16 3.11
2238 2349 6.015940 ACCTTCTGAAACTGATCCATTGTTTC 60.016 38.462 16.68 16.68 45.51 2.78
2239 2350 5.835280 ACCTTCTGAAACTGATCCATTGTTT 59.165 36.000 0.00 0.00 36.73 2.83
2240 2351 5.242393 CACCTTCTGAAACTGATCCATTGTT 59.758 40.000 0.00 0.00 0.00 2.83
2241 2352 4.763793 CACCTTCTGAAACTGATCCATTGT 59.236 41.667 0.00 0.00 0.00 2.71
2242 2353 4.157289 CCACCTTCTGAAACTGATCCATTG 59.843 45.833 0.00 0.00 0.00 2.82
2243 2354 4.043310 TCCACCTTCTGAAACTGATCCATT 59.957 41.667 0.00 0.00 0.00 3.16
2244 2355 3.588842 TCCACCTTCTGAAACTGATCCAT 59.411 43.478 0.00 0.00 0.00 3.41
2245 2356 2.978978 TCCACCTTCTGAAACTGATCCA 59.021 45.455 0.00 0.00 0.00 3.41
2246 2357 3.703001 TCCACCTTCTGAAACTGATCC 57.297 47.619 0.00 0.00 0.00 3.36
2247 2358 5.734720 TGTATCCACCTTCTGAAACTGATC 58.265 41.667 0.00 0.00 0.00 2.92
2248 2359 5.338708 CCTGTATCCACCTTCTGAAACTGAT 60.339 44.000 0.00 0.00 0.00 2.90
2249 2360 4.020218 CCTGTATCCACCTTCTGAAACTGA 60.020 45.833 0.00 0.00 0.00 3.41
2250 2361 4.020218 TCCTGTATCCACCTTCTGAAACTG 60.020 45.833 0.00 0.00 0.00 3.16
2251 2362 4.168101 TCCTGTATCCACCTTCTGAAACT 58.832 43.478 0.00 0.00 0.00 2.66
2252 2363 4.020128 ACTCCTGTATCCACCTTCTGAAAC 60.020 45.833 0.00 0.00 0.00 2.78
2253 2364 4.168101 ACTCCTGTATCCACCTTCTGAAA 58.832 43.478 0.00 0.00 0.00 2.69
2254 2365 3.791320 ACTCCTGTATCCACCTTCTGAA 58.209 45.455 0.00 0.00 0.00 3.02
2255 2366 3.474798 ACTCCTGTATCCACCTTCTGA 57.525 47.619 0.00 0.00 0.00 3.27
2256 2367 3.369892 CCAACTCCTGTATCCACCTTCTG 60.370 52.174 0.00 0.00 0.00 3.02
2257 2368 2.840651 CCAACTCCTGTATCCACCTTCT 59.159 50.000 0.00 0.00 0.00 2.85
2258 2369 2.681097 GCCAACTCCTGTATCCACCTTC 60.681 54.545 0.00 0.00 0.00 3.46
2259 2370 1.282157 GCCAACTCCTGTATCCACCTT 59.718 52.381 0.00 0.00 0.00 3.50
2260 2371 0.912486 GCCAACTCCTGTATCCACCT 59.088 55.000 0.00 0.00 0.00 4.00
2261 2372 0.912486 AGCCAACTCCTGTATCCACC 59.088 55.000 0.00 0.00 0.00 4.61
2262 2373 2.317530 GAGCCAACTCCTGTATCCAC 57.682 55.000 0.00 0.00 36.90 4.02
2272 2383 1.067821 CAGATAGTCGGGAGCCAACTC 59.932 57.143 0.00 0.00 42.66 3.01
2273 2384 1.115467 CAGATAGTCGGGAGCCAACT 58.885 55.000 0.00 0.00 0.00 3.16
2274 2385 1.112113 TCAGATAGTCGGGAGCCAAC 58.888 55.000 0.00 0.00 0.00 3.77
2275 2386 2.088104 ATCAGATAGTCGGGAGCCAA 57.912 50.000 0.00 0.00 0.00 4.52
2276 2387 2.088104 AATCAGATAGTCGGGAGCCA 57.912 50.000 0.00 0.00 0.00 4.75
2277 2388 3.827302 TCTTAATCAGATAGTCGGGAGCC 59.173 47.826 0.00 0.00 0.00 4.70
2278 2389 4.617298 GCTCTTAATCAGATAGTCGGGAGC 60.617 50.000 0.00 0.00 36.27 4.70
2279 2390 4.082463 GGCTCTTAATCAGATAGTCGGGAG 60.082 50.000 0.00 0.00 0.00 4.30
2280 2391 3.827302 GGCTCTTAATCAGATAGTCGGGA 59.173 47.826 0.00 0.00 0.00 5.14
2281 2392 3.056465 GGGCTCTTAATCAGATAGTCGGG 60.056 52.174 0.00 0.00 0.00 5.14
2282 2393 3.574396 TGGGCTCTTAATCAGATAGTCGG 59.426 47.826 0.00 0.00 0.00 4.79
2283 2394 4.855715 TGGGCTCTTAATCAGATAGTCG 57.144 45.455 0.00 0.00 0.00 4.18
2284 2395 6.603940 AGATGGGCTCTTAATCAGATAGTC 57.396 41.667 0.00 0.00 0.00 2.59
2285 2396 7.309499 CGTTAGATGGGCTCTTAATCAGATAGT 60.309 40.741 0.00 0.00 35.28 2.12
2286 2397 7.032580 CGTTAGATGGGCTCTTAATCAGATAG 58.967 42.308 0.00 0.00 35.28 2.08
2287 2398 6.071334 CCGTTAGATGGGCTCTTAATCAGATA 60.071 42.308 0.00 0.00 35.28 1.98
2288 2399 5.279708 CCGTTAGATGGGCTCTTAATCAGAT 60.280 44.000 0.00 0.00 35.28 2.90
2289 2400 4.039245 CCGTTAGATGGGCTCTTAATCAGA 59.961 45.833 0.00 0.00 35.28 3.27
2290 2401 4.039245 TCCGTTAGATGGGCTCTTAATCAG 59.961 45.833 0.00 0.00 35.28 2.90
2291 2402 3.964688 TCCGTTAGATGGGCTCTTAATCA 59.035 43.478 0.00 0.00 35.28 2.57
2292 2403 4.308265 GTCCGTTAGATGGGCTCTTAATC 58.692 47.826 0.00 0.00 35.28 1.75
2293 2404 3.071167 GGTCCGTTAGATGGGCTCTTAAT 59.929 47.826 0.00 0.00 35.28 1.40
2294 2405 2.433239 GGTCCGTTAGATGGGCTCTTAA 59.567 50.000 0.00 0.00 35.28 1.85
2295 2406 2.037144 GGTCCGTTAGATGGGCTCTTA 58.963 52.381 0.00 0.00 35.28 2.10
2296 2407 0.831307 GGTCCGTTAGATGGGCTCTT 59.169 55.000 0.00 0.00 35.28 2.85
2297 2408 0.032017 AGGTCCGTTAGATGGGCTCT 60.032 55.000 0.00 0.00 38.06 4.09
2298 2409 0.105039 CAGGTCCGTTAGATGGGCTC 59.895 60.000 0.00 0.00 0.00 4.70
2299 2410 1.338136 CCAGGTCCGTTAGATGGGCT 61.338 60.000 0.00 0.00 0.00 5.19
2300 2411 1.146263 CCAGGTCCGTTAGATGGGC 59.854 63.158 0.00 0.00 0.00 5.36
2301 2412 0.753262 CTCCAGGTCCGTTAGATGGG 59.247 60.000 0.00 0.00 0.00 4.00
2302 2413 0.753262 CCTCCAGGTCCGTTAGATGG 59.247 60.000 0.00 0.00 0.00 3.51
2303 2414 0.105039 GCCTCCAGGTCCGTTAGATG 59.895 60.000 0.00 0.00 37.57 2.90
2304 2415 1.392710 CGCCTCCAGGTCCGTTAGAT 61.393 60.000 0.00 0.00 37.57 1.98
2305 2416 2.050350 CGCCTCCAGGTCCGTTAGA 61.050 63.158 0.00 0.00 37.57 2.10
2306 2417 2.494918 CGCCTCCAGGTCCGTTAG 59.505 66.667 0.00 0.00 37.57 2.34
2307 2418 3.072468 CCGCCTCCAGGTCCGTTA 61.072 66.667 0.00 0.00 37.57 3.18
2327 2438 0.608640 ACCGATCTTGGACCAGTGTC 59.391 55.000 0.00 0.00 40.98 3.67
2328 2439 0.608640 GACCGATCTTGGACCAGTGT 59.391 55.000 0.00 0.00 0.00 3.55
2329 2440 0.458543 CGACCGATCTTGGACCAGTG 60.459 60.000 0.00 0.00 0.00 3.66
2330 2441 1.605058 CCGACCGATCTTGGACCAGT 61.605 60.000 0.00 0.00 0.00 4.00
2331 2442 1.141881 CCGACCGATCTTGGACCAG 59.858 63.158 0.00 0.00 0.00 4.00
2332 2443 1.601419 GACCGACCGATCTTGGACCA 61.601 60.000 0.00 0.00 0.00 4.02
2333 2444 1.141234 GACCGACCGATCTTGGACC 59.859 63.158 0.00 0.00 0.00 4.46
2334 2445 1.226603 CGACCGACCGATCTTGGAC 60.227 63.158 0.00 0.00 0.00 4.02
2335 2446 0.961857 TTCGACCGACCGATCTTGGA 60.962 55.000 0.32 0.00 38.45 3.53
2336 2447 0.525668 CTTCGACCGACCGATCTTGG 60.526 60.000 0.32 0.00 38.45 3.61
2337 2448 0.525668 CCTTCGACCGACCGATCTTG 60.526 60.000 0.32 0.00 38.45 3.02
2338 2449 1.664321 CCCTTCGACCGACCGATCTT 61.664 60.000 0.32 0.00 38.45 2.40
2339 2450 2.119655 CCCTTCGACCGACCGATCT 61.120 63.158 0.32 0.00 38.45 2.75
2340 2451 2.061182 CTCCCTTCGACCGACCGATC 62.061 65.000 0.32 0.00 38.45 3.69
2341 2452 2.044650 TCCCTTCGACCGACCGAT 60.045 61.111 0.32 0.00 38.45 4.18
2342 2453 2.749044 CTCCCTTCGACCGACCGA 60.749 66.667 0.00 0.00 36.70 4.69
2343 2454 3.048941 GACTCCCTTCGACCGACCG 62.049 68.421 0.00 0.00 0.00 4.79
2344 2455 1.321074 ATGACTCCCTTCGACCGACC 61.321 60.000 0.00 0.00 0.00 4.79
2345 2456 0.531200 AATGACTCCCTTCGACCGAC 59.469 55.000 0.00 0.00 0.00 4.79
2346 2457 1.263356 AAATGACTCCCTTCGACCGA 58.737 50.000 0.00 0.00 0.00 4.69
2347 2458 2.094762 AAAATGACTCCCTTCGACCG 57.905 50.000 0.00 0.00 0.00 4.79
2348 2459 3.408634 TGAAAAATGACTCCCTTCGACC 58.591 45.455 0.00 0.00 0.00 4.79
2349 2460 5.875359 ACTATGAAAAATGACTCCCTTCGAC 59.125 40.000 0.00 0.00 0.00 4.20
2350 2461 6.049955 ACTATGAAAAATGACTCCCTTCGA 57.950 37.500 0.00 0.00 0.00 3.71
2351 2462 6.743575 AACTATGAAAAATGACTCCCTTCG 57.256 37.500 0.00 0.00 0.00 3.79
2354 2465 9.588096 AGTTTAAACTATGAAAAATGACTCCCT 57.412 29.630 19.26 0.00 37.52 4.20
2355 2466 9.626045 CAGTTTAAACTATGAAAAATGACTCCC 57.374 33.333 20.15 0.00 37.08 4.30
2363 2474 9.862371 TGCAAACTCAGTTTAAACTATGAAAAA 57.138 25.926 20.15 1.55 37.08 1.94
2364 2475 9.515020 CTGCAAACTCAGTTTAAACTATGAAAA 57.485 29.630 20.15 2.81 37.08 2.29
2365 2476 8.682710 ACTGCAAACTCAGTTTAAACTATGAAA 58.317 29.630 20.15 3.97 44.26 2.69
2366 2477 8.220755 ACTGCAAACTCAGTTTAAACTATGAA 57.779 30.769 20.15 8.61 44.26 2.57
2367 2478 7.801716 ACTGCAAACTCAGTTTAAACTATGA 57.198 32.000 20.15 14.02 44.26 2.15
2368 2479 8.988934 TCTACTGCAAACTCAGTTTAAACTATG 58.011 33.333 20.15 16.79 44.26 2.23
2369 2480 8.989980 GTCTACTGCAAACTCAGTTTAAACTAT 58.010 33.333 20.15 6.81 44.26 2.12
2454 2773 7.107542 AGAAACGATGTTGGGCTACTTAAATA 58.892 34.615 0.00 0.00 0.00 1.40
2493 2812 1.803334 TAGCTTGGCAGTTGTTACCG 58.197 50.000 0.00 0.00 0.00 4.02
2501 2820 4.762251 CCTAGAAAAACTTAGCTTGGCAGT 59.238 41.667 0.00 0.00 0.00 4.40
2549 2868 1.929836 GCAAAACATGCGACCACAAAA 59.070 42.857 0.00 0.00 46.87 2.44
2629 2950 4.512944 ACAACATACTCAACTTCACTGCAG 59.487 41.667 13.48 13.48 0.00 4.41
2700 3021 2.027561 TCTTACATTGTGGAACGGAGGG 60.028 50.000 0.00 0.00 42.39 4.30
2702 3023 2.666508 CGTCTTACATTGTGGAACGGAG 59.333 50.000 0.00 0.00 42.39 4.63
2703 3024 2.036217 ACGTCTTACATTGTGGAACGGA 59.964 45.455 17.79 0.42 42.39 4.69
2704 3025 2.409975 ACGTCTTACATTGTGGAACGG 58.590 47.619 17.79 6.12 42.39 4.44
2705 3026 4.461992 AAACGTCTTACATTGTGGAACG 57.538 40.909 14.21 14.21 42.39 3.95
2748 3069 6.016443 TCCGTCCCATAATGTAAAACGTTTTT 60.016 34.615 29.42 15.16 0.00 1.94
2749 3070 5.472820 TCCGTCCCATAATGTAAAACGTTTT 59.527 36.000 27.65 27.65 0.00 2.43
2750 3071 5.002516 TCCGTCCCATAATGTAAAACGTTT 58.997 37.500 7.96 7.96 0.00 3.60
2751 3072 4.577875 TCCGTCCCATAATGTAAAACGTT 58.422 39.130 0.00 0.00 0.00 3.99
2752 3073 4.186159 CTCCGTCCCATAATGTAAAACGT 58.814 43.478 0.00 0.00 0.00 3.99
2753 3074 3.558418 CCTCCGTCCCATAATGTAAAACG 59.442 47.826 0.00 0.00 0.00 3.60
2754 3075 3.881089 CCCTCCGTCCCATAATGTAAAAC 59.119 47.826 0.00 0.00 0.00 2.43
2755 3076 3.781407 TCCCTCCGTCCCATAATGTAAAA 59.219 43.478 0.00 0.00 0.00 1.52
2756 3077 3.386063 TCCCTCCGTCCCATAATGTAAA 58.614 45.455 0.00 0.00 0.00 2.01
2757 3078 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2758 3079 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2759 3080 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2760 3081 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2761 3082 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2762 3083 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2763 3084 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2764 3085 1.133544 GTAGTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
2765 3086 0.257039 GTAGTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2766 3087 0.550432 AGTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
2767 3088 2.437651 ACTAGTAGTACTCCCTCCGTCC 59.562 54.545 5.96 0.00 0.00 4.79
2768 3089 3.836365 ACTAGTAGTACTCCCTCCGTC 57.164 52.381 5.96 0.00 0.00 4.79
2769 3090 4.551671 TCTACTAGTAGTACTCCCTCCGT 58.448 47.826 25.58 1.26 34.84 4.69
2770 3091 5.743636 ATCTACTAGTAGTACTCCCTCCG 57.256 47.826 25.58 1.03 34.84 4.63
2771 3092 9.859152 TTTTAATCTACTAGTAGTACTCCCTCC 57.141 37.037 25.58 0.00 34.84 4.30
2783 3104 9.480053 TGTGCGTTTAAGTTTTAATCTACTAGT 57.520 29.630 0.00 0.00 0.00 2.57
2784 3105 9.737025 GTGTGCGTTTAAGTTTTAATCTACTAG 57.263 33.333 0.00 0.00 0.00 2.57
2785 3106 9.258826 TGTGTGCGTTTAAGTTTTAATCTACTA 57.741 29.630 0.00 0.00 0.00 1.82
2786 3107 8.145316 TGTGTGCGTTTAAGTTTTAATCTACT 57.855 30.769 0.00 0.00 0.00 2.57
2787 3108 8.944212 ATGTGTGCGTTTAAGTTTTAATCTAC 57.056 30.769 0.00 0.00 0.00 2.59
2799 3120 3.391965 ACCGAACTATGTGTGCGTTTAA 58.608 40.909 0.00 0.00 45.96 1.52
2804 3125 3.697982 TGTATACCGAACTATGTGTGCG 58.302 45.455 0.00 0.00 46.91 5.34
2806 3127 5.050363 GGCATTGTATACCGAACTATGTGTG 60.050 44.000 0.00 0.00 34.09 3.82
2838 3160 4.460263 AGAAATGTGGTGTTTGCTACTGA 58.540 39.130 0.00 0.00 0.00 3.41
2841 3163 4.829064 TGAGAAATGTGGTGTTTGCTAC 57.171 40.909 0.00 0.00 0.00 3.58
2887 3209 8.347004 TCACATATATCCTTTTTGAAGCACAA 57.653 30.769 0.00 0.00 36.65 3.33
2967 3289 1.153066 TTTCACGCTTGCTCCCACA 60.153 52.632 0.00 0.00 0.00 4.17
3165 3487 3.903467 AGCTTTCACCTCCTTTGTTTCT 58.097 40.909 0.00 0.00 0.00 2.52
3237 3559 6.351456 GCCTCTCTACTACCTCTTTCATTGTT 60.351 42.308 0.00 0.00 0.00 2.83
3252 3574 3.230134 CAGCCTATTGAGCCTCTCTACT 58.770 50.000 0.00 0.00 0.00 2.57
3494 3818 3.773119 AGGGTGTAAGACATATTGGTCGT 59.227 43.478 0.00 0.00 42.62 4.34
3624 3950 6.777782 CCTCTAGGGCATATTTTCTTCAGAT 58.222 40.000 0.00 0.00 0.00 2.90
3625 3951 6.179906 CCTCTAGGGCATATTTTCTTCAGA 57.820 41.667 0.00 0.00 0.00 3.27
3796 4122 7.177392 AGGAAACCTTAACCATCTTTGATCAAG 59.823 37.037 8.41 3.62 0.00 3.02
3893 4220 6.982141 ACGATCATTATGCTAAGTTAACGGAA 59.018 34.615 0.00 0.00 0.00 4.30
4005 4336 5.963176 TGTTGTGATGTTTGATAGCACAT 57.037 34.783 0.00 0.00 39.00 3.21
4168 4499 9.649167 GTAACTAACTCCTTAGTCATTTGCTTA 57.351 33.333 0.00 0.00 41.58 3.09
4203 4534 9.582431 CAAGTCTCTTTACTCGTTCCATAATAA 57.418 33.333 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.