Multiple sequence alignment - TraesCS4B01G111200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G111200 chr4B 100.000 8995 0 0 1 8995 124754359 124745365 0.000000e+00 16611
1 TraesCS4B01G111200 chr4B 90.341 176 11 4 4049 4221 549841736 549841908 9.090000e-55 226
2 TraesCS4B01G111200 chr4B 89.773 176 12 4 4049 4221 499224482 499224654 4.230000e-53 220
3 TraesCS4B01G111200 chr4D 97.173 3254 80 5 5020 8261 88129274 88126021 0.000000e+00 5489
4 TraesCS4B01G111200 chr4D 95.080 2988 113 20 616 3591 88133491 88130526 0.000000e+00 4673
5 TraesCS4B01G111200 chr4D 96.491 399 13 1 1 398 88134197 88133799 0.000000e+00 658
6 TraesCS4B01G111200 chr4D 95.422 415 12 4 8581 8994 88126016 88125608 0.000000e+00 654
7 TraesCS4B01G111200 chr4D 92.308 468 23 3 3603 4069 88129832 88129377 0.000000e+00 652
8 TraesCS4B01G111200 chr4D 93.103 203 11 2 411 612 88133662 88133462 2.460000e-75 294
9 TraesCS4B01G111200 chr4D 92.857 154 11 0 4068 4221 89423899 89424052 3.270000e-54 224
10 TraesCS4B01G111200 chr4D 92.308 156 12 0 4066 4221 334164554 334164399 1.180000e-53 222
11 TraesCS4B01G111200 chr4D 91.250 160 13 1 4062 4221 34661522 34661680 5.470000e-52 217
12 TraesCS4B01G111200 chr4D 91.195 159 13 1 4064 4222 386984833 386984676 1.970000e-51 215
13 TraesCS4B01G111200 chr4D 90.909 154 14 0 4068 4221 23422598 23422445 3.290000e-49 207
14 TraesCS4B01G111200 chr4D 90.909 154 14 0 4068 4221 117421352 117421199 3.290000e-49 207
15 TraesCS4B01G111200 chr4D 89.571 163 16 1 4060 4221 326379862 326380024 1.180000e-48 206
16 TraesCS4B01G111200 chr4D 88.000 175 18 3 4050 4221 12520322 12520148 4.260000e-48 204
17 TraesCS4B01G111200 chr4D 98.182 110 2 0 4224 4333 88129380 88129271 9.220000e-45 193
18 TraesCS4B01G111200 chr4A 96.723 3265 94 7 5020 8276 500908258 500904999 0.000000e+00 5424
19 TraesCS4B01G111200 chr4A 94.901 1314 50 7 2287 3592 500910821 500909517 0.000000e+00 2039
20 TraesCS4B01G111200 chr4A 94.184 1324 72 5 857 2177 500912145 500910824 0.000000e+00 2013
21 TraesCS4B01G111200 chr4A 95.823 407 15 2 1 405 500954619 500954213 0.000000e+00 656
22 TraesCS4B01G111200 chr4A 95.567 406 17 1 1 405 500940471 500940066 0.000000e+00 649
23 TraesCS4B01G111200 chr4A 95.320 406 15 3 1 405 500958746 500958344 7.610000e-180 641
24 TraesCS4B01G111200 chr4A 90.850 459 25 6 3603 4058 500908763 500908319 4.650000e-167 599
25 TraesCS4B01G111200 chr4A 91.084 415 27 6 8581 8994 500905002 500904597 3.670000e-153 553
26 TraesCS4B01G111200 chr4A 92.611 203 14 1 411 612 500912813 500912611 3.180000e-74 291
27 TraesCS4B01G111200 chr4A 96.023 176 3 2 625 800 500912631 500912460 5.320000e-72 283
28 TraesCS4B01G111200 chr3B 91.453 702 43 9 4325 5017 425570546 425571239 0.000000e+00 948
29 TraesCS4B01G111200 chr3B 90.909 176 10 4 4049 4221 674989953 674990125 1.950000e-56 231
30 TraesCS4B01G111200 chr6D 89.855 690 56 7 4334 5017 433137152 433137833 0.000000e+00 874
31 TraesCS4B01G111200 chr6D 92.208 154 11 1 4068 4221 431160828 431160676 5.470000e-52 217
32 TraesCS4B01G111200 chr6D 91.558 154 13 0 4068 4221 145462463 145462616 7.070000e-51 213
33 TraesCS4B01G111200 chr2B 89.580 691 53 12 4334 5017 480967285 480967963 0.000000e+00 859
34 TraesCS4B01G111200 chr2B 88.761 694 62 8 4334 5021 788106813 788107496 0.000000e+00 835
35 TraesCS4B01G111200 chr2B 89.071 183 14 6 4049 4227 437125150 437124970 1.180000e-53 222
36 TraesCS4B01G111200 chr2A 89.260 689 60 9 4330 5017 256916915 256916240 0.000000e+00 850
37 TraesCS4B01G111200 chr2A 88.571 700 65 7 4334 5026 633453151 633452460 0.000000e+00 835
38 TraesCS4B01G111200 chr2A 90.173 173 15 1 4066 4236 39164707 39164535 3.270000e-54 224
39 TraesCS4B01G111200 chr7A 89.162 692 59 9 4334 5017 575730546 575729863 0.000000e+00 848
40 TraesCS4B01G111200 chr5A 89.146 691 54 12 4334 5016 113773131 113772454 0.000000e+00 841
41 TraesCS4B01G111200 chr5A 95.938 320 12 1 8270 8588 549204330 549204649 1.340000e-142 518
42 TraesCS4B01G111200 chr5A 91.018 167 14 1 4068 4234 320214405 320214240 3.270000e-54 224
43 TraesCS4B01G111200 chr5B 89.001 691 58 11 4334 5017 682066359 682067038 0.000000e+00 839
44 TraesCS4B01G111200 chr5B 96.226 318 12 0 8267 8584 288646191 288645874 1.030000e-143 521
45 TraesCS4B01G111200 chr5B 96.190 315 12 0 8272 8586 69282635 69282949 4.820000e-142 516
46 TraesCS4B01G111200 chr5B 90.909 176 10 4 4049 4221 566789657 566789485 1.950000e-56 231
47 TraesCS4B01G111200 chr5B 90.751 173 10 4 4049 4218 48622447 48622616 9.090000e-55 226
48 TraesCS4B01G111200 chr7D 97.428 311 8 0 8274 8584 539382081 539381771 1.720000e-146 531
49 TraesCS4B01G111200 chr2D 95.975 323 11 1 8272 8592 213697307 213696985 2.880000e-144 523
50 TraesCS4B01G111200 chr1A 97.078 308 9 0 8277 8584 540723172 540722865 3.720000e-143 520
51 TraesCS4B01G111200 chr1A 90.798 163 13 2 4068 4228 39438838 39439000 5.470000e-52 217
52 TraesCS4B01G111200 chr1A 86.957 184 17 7 4063 4244 283855515 283855693 5.510000e-47 200
53 TraesCS4B01G111200 chr6A 95.639 321 14 0 8266 8586 588602113 588602433 4.820000e-142 516
54 TraesCS4B01G111200 chr6A 96.190 315 12 0 8269 8583 600261229 600260915 4.820000e-142 516
55 TraesCS4B01G111200 chr6A 96.190 315 11 1 8269 8583 600126667 600126980 1.730000e-141 514
56 TraesCS4B01G111200 chr6A 90.909 165 13 2 4068 4230 101317236 101317400 4.230000e-53 220
57 TraesCS4B01G111200 chr3D 93.082 159 10 1 4062 4220 87926166 87926009 1.950000e-56 231
58 TraesCS4B01G111200 chr1B 90.230 174 11 4 4049 4219 446082653 446082483 1.180000e-53 222
59 TraesCS4B01G111200 chr1B 89.071 183 13 5 4049 4227 106955840 106955661 4.230000e-53 220
60 TraesCS4B01G111200 chr1B 89.773 176 12 4 4049 4221 610318532 610318360 4.230000e-53 220
61 TraesCS4B01G111200 chr1B 91.772 158 12 1 4064 4221 70500442 70500598 1.520000e-52 219
62 TraesCS4B01G111200 chr1B 89.595 173 12 4 4049 4218 497735430 497735599 1.970000e-51 215
63 TraesCS4B01G111200 chr1B 89.205 176 12 5 4049 4221 355947481 355947310 7.070000e-51 213
64 TraesCS4B01G111200 chr1B 89.595 173 10 5 4049 4218 446426339 446426506 7.070000e-51 213
65 TraesCS4B01G111200 chrUn 90.173 173 11 4 4049 4218 86671297 86671466 4.230000e-53 220
66 TraesCS4B01G111200 chrUn 89.809 157 16 0 4065 4221 141680743 141680899 1.530000e-47 202
67 TraesCS4B01G111200 chrUn 89.103 156 16 1 4066 4221 34210752 34210906 9.220000e-45 193
68 TraesCS4B01G111200 chrUn 88.961 154 17 0 4068 4221 41734376 41734223 3.310000e-44 191
69 TraesCS4B01G111200 chrUn 87.209 172 17 5 4068 4237 81477639 81477807 3.310000e-44 191
70 TraesCS4B01G111200 chrUn 88.961 154 17 0 4068 4221 96473984 96474137 3.310000e-44 191
71 TraesCS4B01G111200 chrUn 88.961 154 17 0 4068 4221 127140023 127140176 3.310000e-44 191
72 TraesCS4B01G111200 chrUn 86.982 169 19 3 4068 4233 51489137 51488969 4.290000e-43 187
73 TraesCS4B01G111200 chrUn 86.747 166 20 2 4058 4221 86970673 86970838 5.550000e-42 183
74 TraesCS4B01G111200 chr1D 92.208 154 12 0 4068 4221 443117355 443117202 1.520000e-52 219
75 TraesCS4B01G111200 chr1D 88.506 174 18 2 4065 4236 141521759 141521932 9.150000e-50 209
76 TraesCS4B01G111200 chr7B 89.655 174 12 4 4049 4219 444539469 444539639 5.470000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G111200 chr4B 124745365 124754359 8994 True 16611.000000 16611 100.000000 1 8995 1 chr4B.!!$R1 8994
1 TraesCS4B01G111200 chr4D 88125608 88134197 8589 True 1801.857143 5489 95.394143 1 8994 7 chr4D.!!$R6 8993
2 TraesCS4B01G111200 chr4A 500904597 500912813 8216 True 1600.285714 5424 93.768000 411 8994 7 chr4A.!!$R2 8583
3 TraesCS4B01G111200 chr4A 500954213 500958746 4533 True 648.500000 656 95.571500 1 405 2 chr4A.!!$R3 404
4 TraesCS4B01G111200 chr3B 425570546 425571239 693 False 948.000000 948 91.453000 4325 5017 1 chr3B.!!$F1 692
5 TraesCS4B01G111200 chr6D 433137152 433137833 681 False 874.000000 874 89.855000 4334 5017 1 chr6D.!!$F2 683
6 TraesCS4B01G111200 chr2B 480967285 480967963 678 False 859.000000 859 89.580000 4334 5017 1 chr2B.!!$F1 683
7 TraesCS4B01G111200 chr2B 788106813 788107496 683 False 835.000000 835 88.761000 4334 5021 1 chr2B.!!$F2 687
8 TraesCS4B01G111200 chr2A 256916240 256916915 675 True 850.000000 850 89.260000 4330 5017 1 chr2A.!!$R2 687
9 TraesCS4B01G111200 chr2A 633452460 633453151 691 True 835.000000 835 88.571000 4334 5026 1 chr2A.!!$R3 692
10 TraesCS4B01G111200 chr7A 575729863 575730546 683 True 848.000000 848 89.162000 4334 5017 1 chr7A.!!$R1 683
11 TraesCS4B01G111200 chr5A 113772454 113773131 677 True 841.000000 841 89.146000 4334 5016 1 chr5A.!!$R1 682
12 TraesCS4B01G111200 chr5B 682066359 682067038 679 False 839.000000 839 89.001000 4334 5017 1 chr5B.!!$F3 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 1922 0.266152 TCCATCTCTCCTCCCCTTCC 59.734 60.000 0.00 0.00 0.00 3.46 F
838 1924 0.267356 CATCTCTCCTCCCCTTCCCT 59.733 60.000 0.00 0.00 0.00 4.20 F
1961 3307 0.463654 GCCAAGTCGCCATCCATGTA 60.464 55.000 0.00 0.00 0.00 2.29 F
2382 3730 0.889186 GTGGGTGCCGAAGTTGTGAT 60.889 55.000 0.00 0.00 0.00 3.06 F
4051 6326 0.104304 AAGGTCACCACGAGTCACAC 59.896 55.000 0.00 0.00 0.00 3.82 F
4298 6573 1.186200 TCGGTTGAGGTCCTCATGAG 58.814 55.000 22.45 16.24 40.39 2.90 F
4920 7208 2.202892 GAGCAATCGGGTCGGGTC 60.203 66.667 0.00 0.00 33.78 4.46 F
6248 9059 2.029623 GGCTACCTGATTACTCCGACA 58.970 52.381 0.00 0.00 0.00 4.35 F
7248 10059 2.146342 AGCTGTGTTGACGAGATTTGG 58.854 47.619 0.00 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 3077 0.166597 CACAATGCAGGTACAGTGCG 59.833 55.000 13.12 3.92 44.35 5.34 R
2028 3375 0.252467 AGACCTGGCTCTAGCACCTT 60.252 55.000 4.07 0.00 44.36 3.50 R
2968 4422 1.854743 CTGTTATCGACGTGGCAGATG 59.145 52.381 0.00 0.00 0.00 2.90 R
4213 6488 1.134228 ACAAACTACACCCCGTTCCT 58.866 50.000 0.00 0.00 0.00 3.36 R
5582 8393 0.392998 CAAGGGAATCCTCACGGTGG 60.393 60.000 8.50 0.00 44.07 4.61 R
5601 8412 2.768769 GGAGGGTAGACCAGGGCC 60.769 72.222 0.00 0.00 43.89 5.80 R
6547 9358 0.741221 CCCAGCGAGTACTTTGAGGC 60.741 60.000 0.00 0.00 0.00 4.70 R
7300 10111 0.040499 GGCCAAACCTACCCAATCCA 59.960 55.000 0.00 0.00 34.51 3.41 R
8809 12040 0.611618 ATGGAAATGAAGCCGTGGCA 60.612 50.000 14.29 0.00 44.88 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 244 3.552699 CGAGAGACTACTACGGAGACAAG 59.447 52.174 0.00 0.00 0.00 3.16
254 256 2.806745 CGGAGACAAGCCTCAAACTTGA 60.807 50.000 10.26 0.00 45.99 3.02
401 403 3.005554 GCATGTGTCTTGTAGCATGAGT 58.994 45.455 0.00 0.00 40.61 3.41
405 407 6.648310 GCATGTGTCTTGTAGCATGAGTATAT 59.352 38.462 0.00 0.00 40.61 0.86
406 408 7.814587 GCATGTGTCTTGTAGCATGAGTATATA 59.185 37.037 0.00 0.00 40.61 0.86
407 409 9.866798 CATGTGTCTTGTAGCATGAGTATATAT 57.133 33.333 0.00 0.00 40.61 0.86
444 571 1.843851 CTAATGGGGTAGGCTTGGTCA 59.156 52.381 0.00 0.00 0.00 4.02
453 580 4.137543 GGTAGGCTTGGTCATATTTGAGG 58.862 47.826 0.00 0.00 30.85 3.86
529 1615 8.301720 TCATCTGAAATTTCCTCAACTGATTTG 58.698 33.333 15.48 0.00 36.42 2.32
609 1695 6.900194 TCTTTGGAGAAAAGGAAAGAAGAGA 58.100 36.000 0.00 0.00 44.69 3.10
610 1696 7.346471 TCTTTGGAGAAAAGGAAAGAAGAGAA 58.654 34.615 0.00 0.00 44.69 2.87
611 1697 6.944234 TTGGAGAAAAGGAAAGAAGAGAAC 57.056 37.500 0.00 0.00 0.00 3.01
612 1698 5.377478 TGGAGAAAAGGAAAGAAGAGAACC 58.623 41.667 0.00 0.00 0.00 3.62
613 1699 5.132816 TGGAGAAAAGGAAAGAAGAGAACCT 59.867 40.000 0.00 0.00 0.00 3.50
614 1700 6.065374 GGAGAAAAGGAAAGAAGAGAACCTT 58.935 40.000 0.00 0.00 41.83 3.50
687 1773 1.648720 CGTATTCGCATGGGCTTGG 59.351 57.895 4.59 0.00 38.10 3.61
834 1920 2.158081 GGTATCCATCTCTCCTCCCCTT 60.158 54.545 0.00 0.00 0.00 3.95
835 1921 2.414250 ATCCATCTCTCCTCCCCTTC 57.586 55.000 0.00 0.00 0.00 3.46
836 1922 0.266152 TCCATCTCTCCTCCCCTTCC 59.734 60.000 0.00 0.00 0.00 3.46
837 1923 0.766288 CCATCTCTCCTCCCCTTCCC 60.766 65.000 0.00 0.00 0.00 3.97
838 1924 0.267356 CATCTCTCCTCCCCTTCCCT 59.733 60.000 0.00 0.00 0.00 4.20
881 2225 0.963225 GGTCTCCGGATTCTCTAGCC 59.037 60.000 3.57 0.00 0.00 3.93
882 2226 0.963225 GTCTCCGGATTCTCTAGCCC 59.037 60.000 3.57 0.00 0.00 5.19
911 2256 4.475135 GGCAGTTCCCTCCGGCTC 62.475 72.222 0.00 0.00 0.00 4.70
1171 2516 0.763652 ATGGAGCGCATGAGGATTCT 59.236 50.000 11.47 0.00 0.00 2.40
1224 2569 7.545265 TCTGTTGAAGAAGAAACAAACATTTGG 59.455 33.333 9.09 0.00 35.71 3.28
1296 2641 6.096282 GGGGCTGCTTTATTGTTAACTCAATA 59.904 38.462 7.22 1.05 38.68 1.90
1299 2644 8.190784 GGCTGCTTTATTGTTAACTCAATATGT 58.809 33.333 7.22 0.00 39.17 2.29
1324 2669 1.202348 GAATTGAGGAAAACTGCCCGG 59.798 52.381 0.00 0.00 0.00 5.73
1435 2781 2.544685 GCAGATGCACTAGTGTACCTG 58.455 52.381 26.36 26.36 41.59 4.00
1696 3042 6.022251 GCAACTCGAATGTTTAATGAATGTCG 60.022 38.462 0.00 0.00 0.00 4.35
1731 3077 8.000780 ACTGGGCTATTTTTCTGATGATTTAC 57.999 34.615 0.00 0.00 0.00 2.01
1780 3126 3.586174 ACTATGGCCAGCAGATGTCATAT 59.414 43.478 21.00 0.00 0.00 1.78
1795 3141 7.585210 CAGATGTCATATGAATAACGCACTTTG 59.415 37.037 7.07 0.00 0.00 2.77
1906 3252 7.977818 TGTATTTCTATATGCATCTCACCCTT 58.022 34.615 0.19 0.00 0.00 3.95
1907 3253 7.879677 TGTATTTCTATATGCATCTCACCCTTG 59.120 37.037 0.19 0.00 0.00 3.61
1933 3279 3.898482 ACCCCCTAACATGAGTTTATGC 58.102 45.455 0.00 0.00 39.15 3.14
1961 3307 0.463654 GCCAAGTCGCCATCCATGTA 60.464 55.000 0.00 0.00 0.00 2.29
1962 3308 1.586422 CCAAGTCGCCATCCATGTAG 58.414 55.000 0.00 0.00 0.00 2.74
1980 3327 8.428852 TCCATGTAGCTATTATTGCTTCTGTTA 58.571 33.333 6.46 0.00 41.46 2.41
2028 3375 7.170828 CGCTAACCATAAAGTCATATGCAAGTA 59.829 37.037 0.00 0.00 32.93 2.24
2031 3378 7.807977 ACCATAAAGTCATATGCAAGTAAGG 57.192 36.000 0.00 0.00 32.93 2.69
2034 3381 5.567138 AAAGTCATATGCAAGTAAGGTGC 57.433 39.130 0.00 0.00 42.55 5.01
2051 3398 1.599047 GCTAGAGCCAGGTCTTGCA 59.401 57.895 22.39 0.00 42.68 4.08
2086 3433 1.484038 ACATGTTTGGTGTGTGCCTT 58.516 45.000 0.00 0.00 0.00 4.35
2232 3580 7.694886 TGCACGTATCTAGAATTATCTATCCG 58.305 38.462 0.00 0.00 37.52 4.18
2353 3701 2.700371 TCATCACCTGAATAGCATCCGT 59.300 45.455 0.00 0.00 0.00 4.69
2382 3730 0.889186 GTGGGTGCCGAAGTTGTGAT 60.889 55.000 0.00 0.00 0.00 3.06
2439 3787 6.423001 GCGATAGTTAGGGTGGTAATTAACTG 59.577 42.308 1.50 0.00 37.07 3.16
2581 3930 1.821216 ACCTTGGTATGCCAGTTTCG 58.179 50.000 1.75 0.00 46.91 3.46
2718 4071 7.340232 TCTTGATAATAATGGCTGCACTTCTTT 59.660 33.333 0.50 0.00 0.00 2.52
2830 4281 1.118838 AGTGCAGCTCTCACTATCCC 58.881 55.000 14.61 0.00 42.45 3.85
2968 4422 2.740055 CACGTCAGACTGGCTGGC 60.740 66.667 11.28 8.10 45.82 4.85
3101 4557 2.288666 TGGTCTGTCTTGTTGTTCTGC 58.711 47.619 0.00 0.00 0.00 4.26
3111 4567 5.297029 GTCTTGTTGTTCTGCTCTTTACCTT 59.703 40.000 0.00 0.00 0.00 3.50
3347 4803 1.215423 ACTGGTTTGCTTCTGAAGGGT 59.785 47.619 18.38 0.00 0.00 4.34
3435 4891 9.813080 GTAACTCTTACAAGAATTTACAGCAAG 57.187 33.333 13.41 0.00 35.57 4.01
3436 4892 8.451908 AACTCTTACAAGAATTTACAGCAAGT 57.548 30.769 0.00 0.00 34.03 3.16
3437 4893 8.089115 ACTCTTACAAGAATTTACAGCAAGTC 57.911 34.615 0.00 0.00 34.03 3.01
3438 4894 7.715249 ACTCTTACAAGAATTTACAGCAAGTCA 59.285 33.333 0.00 0.00 34.03 3.41
3439 4895 8.087982 TCTTACAAGAATTTACAGCAAGTCAG 57.912 34.615 0.00 0.00 30.73 3.51
3440 4896 5.113502 ACAAGAATTTACAGCAAGTCAGC 57.886 39.130 0.00 0.00 0.00 4.26
3441 4897 4.580167 ACAAGAATTTACAGCAAGTCAGCA 59.420 37.500 0.00 0.00 36.85 4.41
3442 4898 5.067674 ACAAGAATTTACAGCAAGTCAGCAA 59.932 36.000 0.00 0.00 36.85 3.91
3443 4899 5.972107 AGAATTTACAGCAAGTCAGCAAT 57.028 34.783 0.00 0.00 36.85 3.56
3592 5048 3.510360 GCCTTAGAGTCAGTCACCTAACA 59.490 47.826 0.00 0.00 0.00 2.41
3593 5049 4.021368 GCCTTAGAGTCAGTCACCTAACAA 60.021 45.833 0.00 0.00 0.00 2.83
3594 5050 5.510861 GCCTTAGAGTCAGTCACCTAACAAA 60.511 44.000 0.00 0.00 0.00 2.83
3595 5051 6.522054 CCTTAGAGTCAGTCACCTAACAAAA 58.478 40.000 0.00 0.00 0.00 2.44
3596 5052 6.647067 CCTTAGAGTCAGTCACCTAACAAAAG 59.353 42.308 0.00 0.00 0.00 2.27
3597 5053 5.871396 AGAGTCAGTCACCTAACAAAAGA 57.129 39.130 0.00 0.00 0.00 2.52
3598 5054 5.848406 AGAGTCAGTCACCTAACAAAAGAG 58.152 41.667 0.00 0.00 0.00 2.85
3599 5055 5.364157 AGAGTCAGTCACCTAACAAAAGAGT 59.636 40.000 0.00 0.00 0.00 3.24
3600 5056 5.990668 AGTCAGTCACCTAACAAAAGAGTT 58.009 37.500 0.00 0.00 35.55 3.01
3601 5057 6.415573 AGTCAGTCACCTAACAAAAGAGTTT 58.584 36.000 0.00 0.00 33.07 2.66
3705 5978 4.599047 ACCAGTCTGAGAAAAGAGTCTG 57.401 45.455 0.00 0.00 0.00 3.51
3780 6054 3.530149 CCCCCTATGGTTTTCTTTCCCTA 59.470 47.826 0.00 0.00 0.00 3.53
3781 6055 4.170053 CCCCCTATGGTTTTCTTTCCCTAT 59.830 45.833 0.00 0.00 0.00 2.57
3801 6075 1.358725 GCATTCGCAGTTCCTACGCA 61.359 55.000 0.00 0.00 38.36 5.24
3823 6097 4.831155 CAGAACAGGGAATGATAATGCCAT 59.169 41.667 0.00 0.00 0.00 4.40
3877 6152 3.169908 TGTACTGGTGCAGGAGTTCATA 58.830 45.455 2.96 0.00 35.51 2.15
3885 6160 6.480763 TGGTGCAGGAGTTCATATTTTTCTA 58.519 36.000 0.00 0.00 0.00 2.10
3947 6222 3.995199 GCTGGTAGCATTGCATCTACTA 58.005 45.455 11.91 11.63 41.89 1.82
3974 6249 4.198530 TGCACTGTTTGATCTCTGTTTGA 58.801 39.130 0.00 0.00 0.00 2.69
3975 6250 4.823442 TGCACTGTTTGATCTCTGTTTGAT 59.177 37.500 0.00 0.00 0.00 2.57
3976 6251 5.049198 TGCACTGTTTGATCTCTGTTTGATC 60.049 40.000 0.00 0.00 40.34 2.92
3977 6252 5.180868 GCACTGTTTGATCTCTGTTTGATCT 59.819 40.000 0.00 0.00 40.51 2.75
3978 6253 6.620303 GCACTGTTTGATCTCTGTTTGATCTC 60.620 42.308 0.00 0.00 40.51 2.75
3979 6254 6.649973 CACTGTTTGATCTCTGTTTGATCTCT 59.350 38.462 0.00 0.00 40.51 3.10
3980 6255 6.649973 ACTGTTTGATCTCTGTTTGATCTCTG 59.350 38.462 0.00 0.00 40.51 3.35
3981 6256 6.528321 TGTTTGATCTCTGTTTGATCTCTGT 58.472 36.000 0.00 0.00 40.51 3.41
3982 6257 6.994496 TGTTTGATCTCTGTTTGATCTCTGTT 59.006 34.615 0.00 0.00 40.51 3.16
3983 6258 7.500227 TGTTTGATCTCTGTTTGATCTCTGTTT 59.500 33.333 0.00 0.00 40.51 2.83
3984 6259 8.993121 GTTTGATCTCTGTTTGATCTCTGTTTA 58.007 33.333 0.00 0.00 40.51 2.01
4042 6317 7.823745 ATTGGATTTATCATAAGGTCACCAC 57.176 36.000 0.00 0.00 0.00 4.16
4051 6326 0.104304 AAGGTCACCACGAGTCACAC 59.896 55.000 0.00 0.00 0.00 3.82
4065 6340 5.815740 ACGAGTCACACACTTTCTGTTTTAT 59.184 36.000 0.00 0.00 34.41 1.40
4066 6341 6.129393 CGAGTCACACACTTTCTGTTTTATG 58.871 40.000 0.00 0.00 34.41 1.90
4067 6342 6.238103 CGAGTCACACACTTTCTGTTTTATGT 60.238 38.462 0.00 0.00 34.41 2.29
4068 6343 7.042992 CGAGTCACACACTTTCTGTTTTATGTA 60.043 37.037 0.00 0.00 34.41 2.29
4069 6344 7.916552 AGTCACACACTTTCTGTTTTATGTAC 58.083 34.615 0.00 0.00 26.56 2.90
4070 6345 7.769044 AGTCACACACTTTCTGTTTTATGTACT 59.231 33.333 0.00 0.00 26.56 2.73
4071 6346 8.062448 GTCACACACTTTCTGTTTTATGTACTC 58.938 37.037 0.00 0.00 0.00 2.59
4072 6347 7.225931 TCACACACTTTCTGTTTTATGTACTCC 59.774 37.037 0.00 0.00 0.00 3.85
4073 6348 6.485648 ACACACTTTCTGTTTTATGTACTCCC 59.514 38.462 0.00 0.00 0.00 4.30
4074 6349 6.710744 CACACTTTCTGTTTTATGTACTCCCT 59.289 38.462 0.00 0.00 0.00 4.20
4075 6350 6.935208 ACACTTTCTGTTTTATGTACTCCCTC 59.065 38.462 0.00 0.00 0.00 4.30
4076 6351 7.162082 CACTTTCTGTTTTATGTACTCCCTCT 58.838 38.462 0.00 0.00 0.00 3.69
4077 6352 7.118390 CACTTTCTGTTTTATGTACTCCCTCTG 59.882 40.741 0.00 0.00 0.00 3.35
4078 6353 6.681729 TTCTGTTTTATGTACTCCCTCTGT 57.318 37.500 0.00 0.00 0.00 3.41
4079 6354 6.681729 TCTGTTTTATGTACTCCCTCTGTT 57.318 37.500 0.00 0.00 0.00 3.16
4080 6355 6.698380 TCTGTTTTATGTACTCCCTCTGTTC 58.302 40.000 0.00 0.00 0.00 3.18
4081 6356 5.801380 TGTTTTATGTACTCCCTCTGTTCC 58.199 41.667 0.00 0.00 0.00 3.62
4082 6357 5.546499 TGTTTTATGTACTCCCTCTGTTCCT 59.454 40.000 0.00 0.00 0.00 3.36
4083 6358 6.727231 TGTTTTATGTACTCCCTCTGTTCCTA 59.273 38.462 0.00 0.00 0.00 2.94
4084 6359 7.236019 TGTTTTATGTACTCCCTCTGTTCCTAA 59.764 37.037 0.00 0.00 0.00 2.69
4085 6360 7.801893 TTTATGTACTCCCTCTGTTCCTAAA 57.198 36.000 0.00 0.00 0.00 1.85
4086 6361 7.989947 TTATGTACTCCCTCTGTTCCTAAAT 57.010 36.000 0.00 0.00 0.00 1.40
4087 6362 9.496710 TTTATGTACTCCCTCTGTTCCTAAATA 57.503 33.333 0.00 0.00 0.00 1.40
4088 6363 9.670442 TTATGTACTCCCTCTGTTCCTAAATAT 57.330 33.333 0.00 0.00 0.00 1.28
4090 6365 8.707796 TGTACTCCCTCTGTTCCTAAATATAG 57.292 38.462 0.00 0.00 0.00 1.31
4115 6390 9.667107 AGGTCGTTTTAGAGATTTCAATATGAA 57.333 29.630 0.00 0.00 34.03 2.57
4116 6391 9.704098 GGTCGTTTTAGAGATTTCAATATGAAC 57.296 33.333 0.00 0.00 35.89 3.18
4125 6400 9.698309 AGAGATTTCAATATGAACTACATACGG 57.302 33.333 0.00 0.00 43.12 4.02
4126 6401 9.692749 GAGATTTCAATATGAACTACATACGGA 57.307 33.333 0.00 0.00 43.12 4.69
4129 6404 9.778741 ATTTCAATATGAACTACATACGGATGT 57.221 29.630 19.12 19.12 43.12 3.06
4138 6413 9.729281 TGAACTACATACGGATGTATATAGACA 57.271 33.333 20.64 12.87 45.42 3.41
4173 6448 8.739972 AGTGTAGATTCACTCTTTTTGTTTTGT 58.260 29.630 0.00 0.00 44.07 2.83
4174 6449 9.997482 GTGTAGATTCACTCTTTTTGTTTTGTA 57.003 29.630 0.00 0.00 35.28 2.41
4181 6456 9.997482 TTCACTCTTTTTGTTTTGTATGTAGTC 57.003 29.630 0.00 0.00 0.00 2.59
4182 6457 8.617809 TCACTCTTTTTGTTTTGTATGTAGTCC 58.382 33.333 0.00 0.00 0.00 3.85
4183 6458 8.402472 CACTCTTTTTGTTTTGTATGTAGTCCA 58.598 33.333 0.00 0.00 0.00 4.02
4184 6459 9.131791 ACTCTTTTTGTTTTGTATGTAGTCCAT 57.868 29.630 0.00 0.00 37.58 3.41
4190 6465 9.521841 TTTGTTTTGTATGTAGTCCATATTGGA 57.478 29.630 0.00 0.00 45.98 3.53
4205 6480 8.324191 TCCATATTGGAATGTCTAAAGAGACT 57.676 34.615 6.64 0.00 46.93 3.24
4206 6481 8.772250 TCCATATTGGAATGTCTAAAGAGACTT 58.228 33.333 6.64 0.00 46.93 3.01
4221 6496 9.694137 CTAAAGAGACTTATATTTAGGAACGGG 57.306 37.037 0.00 0.00 33.55 5.28
4222 6497 6.667558 AGAGACTTATATTTAGGAACGGGG 57.332 41.667 0.00 0.00 0.00 5.73
4298 6573 1.186200 TCGGTTGAGGTCCTCATGAG 58.814 55.000 22.45 16.24 40.39 2.90
4412 6687 2.373169 TCCATGAAGACAGTCTTTGCCT 59.627 45.455 17.19 0.00 36.73 4.75
4454 6730 6.678568 TGGGTGAAAAATTGTGTCCATATT 57.321 33.333 0.00 0.00 0.00 1.28
4594 6877 4.387862 AGGCTTCACTTATTGTAAACGTCG 59.612 41.667 0.00 0.00 0.00 5.12
4920 7208 2.202892 GAGCAATCGGGTCGGGTC 60.203 66.667 0.00 0.00 33.78 4.46
5017 7828 4.078922 TCCATGGGTAAAATTGCCATCCTA 60.079 41.667 13.02 0.00 34.27 2.94
5062 7873 3.815401 ACTTCTTTGCGTACATTGCTTCT 59.185 39.130 0.00 0.00 0.00 2.85
5067 7878 3.038788 TGCGTACATTGCTTCTTCTGA 57.961 42.857 0.00 0.00 0.00 3.27
5222 8033 3.118149 TGCAGATTGGTCACTCAGCATAT 60.118 43.478 4.75 0.00 30.08 1.78
5582 8393 8.928733 ACAATTGCTGAATCATATTTGTCAAAC 58.071 29.630 5.05 0.00 0.00 2.93
5716 8527 6.524101 TTTGGCCAATAAGGTAATGACTTC 57.476 37.500 21.26 0.00 40.61 3.01
5757 8568 6.292596 GCTGCATTGTAGTTGCTCTTATCTAC 60.293 42.308 3.64 0.00 40.77 2.59
5993 8804 5.053145 GCGACTCATTTCTTGATAGGATGT 58.947 41.667 0.00 0.00 32.72 3.06
6037 8848 2.325583 GGACTTCATCCGGTTATGCA 57.674 50.000 0.00 0.00 37.88 3.96
6157 8968 3.669536 AGAAACTAAGAGCAGAACCAGC 58.330 45.455 0.00 0.00 0.00 4.85
6248 9059 2.029623 GGCTACCTGATTACTCCGACA 58.970 52.381 0.00 0.00 0.00 4.35
6329 9140 4.950050 AGTGCGCTACTTAGAAGCATTAT 58.050 39.130 9.73 0.00 40.08 1.28
6450 9261 2.869192 CGGCTTCTATTTCAGAGCTTCC 59.131 50.000 0.00 0.00 33.83 3.46
6634 9445 2.945668 GACAACTCAAAGTCTTGCCAGT 59.054 45.455 0.00 0.00 32.14 4.00
6746 9557 6.401047 TCCAGGACATATTACTTCTAACGG 57.599 41.667 0.00 0.00 0.00 4.44
6748 9559 6.040166 TCCAGGACATATTACTTCTAACGGTC 59.960 42.308 0.00 0.00 0.00 4.79
6754 9565 4.789012 ATTACTTCTAACGGTCGTTGGA 57.211 40.909 16.17 16.17 42.40 3.53
7051 9862 7.383102 TGATCATCAAAAAGAGGAAGCTTAC 57.617 36.000 0.00 0.00 40.90 2.34
7139 9950 5.105310 AGCTTGTCCAGTATGAGATTACGTT 60.105 40.000 0.00 0.00 39.69 3.99
7248 10059 2.146342 AGCTGTGTTGACGAGATTTGG 58.854 47.619 0.00 0.00 0.00 3.28
7300 10111 4.986034 GCTGTTGGCCGTTTATTTAAAAGT 59.014 37.500 0.00 0.00 34.27 2.66
7357 10580 2.721090 GTCGATTGTTTTCTTGCTGTGC 59.279 45.455 0.00 0.00 0.00 4.57
7367 10590 3.540314 TCTTGCTGTGCCATTTGTTTT 57.460 38.095 0.00 0.00 0.00 2.43
7369 10592 4.619973 TCTTGCTGTGCCATTTGTTTTAG 58.380 39.130 0.00 0.00 0.00 1.85
7376 10599 5.753744 TGTGCCATTTGTTTTAGTTACGAG 58.246 37.500 0.00 0.00 0.00 4.18
7537 10761 5.568482 TGATGAAGTTTGTTGTTTCTGTCG 58.432 37.500 0.00 0.00 0.00 4.35
7586 10813 4.705023 TGAATCTCGATCTGGAACTACACA 59.295 41.667 0.00 0.00 0.00 3.72
7608 10835 5.524646 ACAAAGGATGCACAACAAGATTTTG 59.475 36.000 0.00 0.00 40.24 2.44
7681 10909 5.280215 CCAGTAGAACCTCTTTCTCCACAAT 60.280 44.000 0.00 0.00 44.02 2.71
7789 11020 5.506686 ACTTGCTTCTTCCTGAGAAAAAC 57.493 39.130 0.00 0.00 43.56 2.43
7952 11183 0.036875 CAACCCTTCTCACCCCAGAC 59.963 60.000 0.00 0.00 0.00 3.51
7962 11193 1.156736 CACCCCAGACGACATGTTTC 58.843 55.000 0.00 0.00 0.00 2.78
8160 11391 6.659824 ACTCGTATAATTTCCACCCTCATTT 58.340 36.000 0.00 0.00 0.00 2.32
8197 11428 4.767908 TCAGAATATAAGATCCAGCCCCT 58.232 43.478 0.00 0.00 0.00 4.79
8224 11455 4.220724 TCGACCCAGTATTTAGGCTGTAT 58.779 43.478 0.00 0.00 0.00 2.29
8268 11499 5.666969 TGTCTGCAATACAAGTACACAAC 57.333 39.130 0.00 0.00 0.00 3.32
8272 11503 6.413818 GTCTGCAATACAAGTACACAACAAAC 59.586 38.462 0.00 0.00 0.00 2.93
8273 11504 6.317642 TCTGCAATACAAGTACACAACAAACT 59.682 34.615 0.00 0.00 0.00 2.66
8274 11505 7.496263 TCTGCAATACAAGTACACAACAAACTA 59.504 33.333 0.00 0.00 0.00 2.24
8275 11506 7.986562 TGCAATACAAGTACACAACAAACTAA 58.013 30.769 0.00 0.00 0.00 2.24
8276 11507 8.126074 TGCAATACAAGTACACAACAAACTAAG 58.874 33.333 0.00 0.00 0.00 2.18
8277 11508 7.589954 GCAATACAAGTACACAACAAACTAAGG 59.410 37.037 0.00 0.00 0.00 2.69
8278 11509 5.494632 ACAAGTACACAACAAACTAAGGC 57.505 39.130 0.00 0.00 0.00 4.35
8279 11510 4.337274 ACAAGTACACAACAAACTAAGGCC 59.663 41.667 0.00 0.00 0.00 5.19
8280 11511 4.432980 AGTACACAACAAACTAAGGCCT 57.567 40.909 0.00 0.00 0.00 5.19
8281 11512 4.386711 AGTACACAACAAACTAAGGCCTC 58.613 43.478 5.23 0.00 0.00 4.70
8282 11513 2.583143 ACACAACAAACTAAGGCCTCC 58.417 47.619 5.23 0.00 0.00 4.30
8283 11514 2.174854 ACACAACAAACTAAGGCCTCCT 59.825 45.455 5.23 0.00 33.87 3.69
8284 11515 3.222603 CACAACAAACTAAGGCCTCCTT 58.777 45.455 5.23 3.40 46.63 3.36
8285 11516 3.636764 CACAACAAACTAAGGCCTCCTTT 59.363 43.478 5.23 0.46 41.69 3.11
8286 11517 3.636764 ACAACAAACTAAGGCCTCCTTTG 59.363 43.478 20.46 20.46 41.69 2.77
8287 11518 2.876581 ACAAACTAAGGCCTCCTTTGG 58.123 47.619 23.60 11.80 41.69 3.28
8288 11519 2.177016 ACAAACTAAGGCCTCCTTTGGT 59.823 45.455 23.60 12.30 41.69 3.67
8289 11520 3.230976 CAAACTAAGGCCTCCTTTGGTT 58.769 45.455 5.23 1.01 44.45 3.67
8290 11521 3.612795 AACTAAGGCCTCCTTTGGTTT 57.387 42.857 5.23 0.00 41.69 3.27
8291 11522 4.734843 AACTAAGGCCTCCTTTGGTTTA 57.265 40.909 5.23 0.00 41.69 2.01
8292 11523 4.302559 ACTAAGGCCTCCTTTGGTTTAG 57.697 45.455 5.23 2.88 41.69 1.85
8293 11524 3.914435 ACTAAGGCCTCCTTTGGTTTAGA 59.086 43.478 5.23 0.00 41.69 2.10
8294 11525 3.441500 AAGGCCTCCTTTGGTTTAGAG 57.558 47.619 5.23 0.00 41.69 2.43
8295 11526 2.041755 AAGGCCTCCTTTGGTTTAGAGG 59.958 50.000 5.23 0.43 41.69 3.69
8302 11533 6.749923 CTCCTTTGGTTTAGAGGAATCTTG 57.250 41.667 0.00 0.00 39.00 3.02
8303 11534 6.200878 TCCTTTGGTTTAGAGGAATCTTGT 57.799 37.500 0.00 0.00 36.67 3.16
8304 11535 7.324388 TCCTTTGGTTTAGAGGAATCTTGTA 57.676 36.000 0.00 0.00 36.67 2.41
8305 11536 7.394816 TCCTTTGGTTTAGAGGAATCTTGTAG 58.605 38.462 0.00 0.00 36.67 2.74
8306 11537 6.599638 CCTTTGGTTTAGAGGAATCTTGTAGG 59.400 42.308 0.00 0.00 32.11 3.18
8307 11538 6.945636 TTGGTTTAGAGGAATCTTGTAGGA 57.054 37.500 0.00 0.00 0.00 2.94
8308 11539 6.945636 TGGTTTAGAGGAATCTTGTAGGAA 57.054 37.500 0.00 0.00 0.00 3.36
8309 11540 7.510675 TGGTTTAGAGGAATCTTGTAGGAAT 57.489 36.000 0.00 0.00 0.00 3.01
8310 11541 7.928873 TGGTTTAGAGGAATCTTGTAGGAATT 58.071 34.615 0.00 0.00 0.00 2.17
8311 11542 8.390921 TGGTTTAGAGGAATCTTGTAGGAATTT 58.609 33.333 0.00 0.00 0.00 1.82
8312 11543 8.894731 GGTTTAGAGGAATCTTGTAGGAATTTC 58.105 37.037 0.00 0.00 0.00 2.17
8313 11544 9.449719 GTTTAGAGGAATCTTGTAGGAATTTCA 57.550 33.333 0.00 0.00 0.00 2.69
8317 11548 8.435982 AGAGGAATCTTGTAGGAATTTCATAGG 58.564 37.037 0.00 0.00 0.00 2.57
8318 11549 8.337118 AGGAATCTTGTAGGAATTTCATAGGA 57.663 34.615 0.00 0.00 0.00 2.94
8319 11550 8.953665 AGGAATCTTGTAGGAATTTCATAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
8355 11586 6.360370 GGAAAAATTCCTTTAGAGCCCTTT 57.640 37.500 1.86 0.00 46.57 3.11
8356 11587 6.166279 GGAAAAATTCCTTTAGAGCCCTTTG 58.834 40.000 1.86 0.00 46.57 2.77
8357 11588 5.745312 AAAATTCCTTTAGAGCCCTTTGG 57.255 39.130 0.00 0.00 0.00 3.28
8358 11589 4.404185 AATTCCTTTAGAGCCCTTTGGT 57.596 40.909 0.00 0.00 0.00 3.67
8359 11590 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
8360 11591 3.895704 TCCTTTAGAGCCCTTTGGTTT 57.104 42.857 0.00 0.00 0.00 3.27
8361 11592 3.496331 TCCTTTAGAGCCCTTTGGTTTG 58.504 45.455 0.00 0.00 0.00 2.93
8362 11593 3.117284 TCCTTTAGAGCCCTTTGGTTTGT 60.117 43.478 0.00 0.00 0.00 2.83
8363 11594 4.105057 TCCTTTAGAGCCCTTTGGTTTGTA 59.895 41.667 0.00 0.00 0.00 2.41
8364 11595 4.459337 CCTTTAGAGCCCTTTGGTTTGTAG 59.541 45.833 0.00 0.00 0.00 2.74
8365 11596 2.586648 AGAGCCCTTTGGTTTGTAGG 57.413 50.000 0.00 0.00 0.00 3.18
8366 11597 2.062636 AGAGCCCTTTGGTTTGTAGGA 58.937 47.619 0.00 0.00 0.00 2.94
8367 11598 2.445525 AGAGCCCTTTGGTTTGTAGGAA 59.554 45.455 0.00 0.00 0.00 3.36
8368 11599 3.076032 AGAGCCCTTTGGTTTGTAGGAAT 59.924 43.478 0.00 0.00 0.00 3.01
8369 11600 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
8370 11601 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
8371 11602 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
8372 11603 4.156477 CCCTTTGGTTTGTAGGAATGGAA 58.844 43.478 0.00 0.00 0.00 3.53
8373 11604 4.777366 CCCTTTGGTTTGTAGGAATGGAAT 59.223 41.667 0.00 0.00 0.00 3.01
8374 11605 5.105351 CCCTTTGGTTTGTAGGAATGGAATC 60.105 44.000 0.00 0.00 0.00 2.52
8375 11606 5.105351 CCTTTGGTTTGTAGGAATGGAATCC 60.105 44.000 0.00 0.00 39.96 3.01
8389 11620 7.922382 GGAATGGAATCCTATTCTTATGGAGA 58.078 38.462 17.55 0.00 36.50 3.71
8390 11621 8.386264 GGAATGGAATCCTATTCTTATGGAGAA 58.614 37.037 17.55 0.00 41.18 2.87
8391 11622 9.799106 GAATGGAATCCTATTCTTATGGAGAAA 57.201 33.333 13.51 0.00 46.90 2.52
8394 11625 9.799106 TGGAATCCTATTCTTATGGAGAAATTC 57.201 33.333 0.00 3.64 46.90 2.17
8399 11630 9.230477 TCCTATTCTTATGGAGAAATTCTTCCT 57.770 33.333 0.00 0.00 46.90 3.36
8404 11635 8.805145 TCTTATGGAGAAATTCTTCCTATCCT 57.195 34.615 0.00 0.00 31.28 3.24
8405 11636 8.875168 TCTTATGGAGAAATTCTTCCTATCCTC 58.125 37.037 0.00 0.00 31.28 3.71
8406 11637 5.896073 TGGAGAAATTCTTCCTATCCTCC 57.104 43.478 0.00 0.00 39.38 4.30
8407 11638 5.288687 TGGAGAAATTCTTCCTATCCTCCA 58.711 41.667 0.00 0.00 44.48 3.86
8408 11639 5.131142 TGGAGAAATTCTTCCTATCCTCCAC 59.869 44.000 0.00 0.00 42.58 4.02
8409 11640 5.131142 GGAGAAATTCTTCCTATCCTCCACA 59.869 44.000 0.00 0.00 38.91 4.17
8410 11641 6.183361 GGAGAAATTCTTCCTATCCTCCACAT 60.183 42.308 0.00 0.00 38.91 3.21
8411 11642 7.218314 AGAAATTCTTCCTATCCTCCACATT 57.782 36.000 0.00 0.00 31.28 2.71
8412 11643 7.646884 AGAAATTCTTCCTATCCTCCACATTT 58.353 34.615 0.00 0.00 31.28 2.32
8413 11644 7.777440 AGAAATTCTTCCTATCCTCCACATTTC 59.223 37.037 0.00 0.00 31.28 2.17
8414 11645 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
8415 11646 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
8416 11647 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
8417 11648 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
8418 11649 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
8419 11650 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
8420 11651 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
8421 11652 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
8422 11653 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
8423 11654 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
8426 11657 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
8427 11658 8.966868 TCCTCCACATTTCATAGGAAAATAAAC 58.033 33.333 6.65 0.00 45.52 2.01
8428 11659 8.748412 CCTCCACATTTCATAGGAAAATAAACA 58.252 33.333 6.65 0.00 45.52 2.83
8438 11669 9.793259 TCATAGGAAAATAAACATTAGCCTAGG 57.207 33.333 3.67 3.67 31.03 3.02
8439 11670 6.961360 AGGAAAATAAACATTAGCCTAGGC 57.039 37.500 27.19 27.19 42.33 3.93
8474 11705 7.592885 AAATCCTATGATGTGAATCAAAGGG 57.407 36.000 0.00 0.00 33.83 3.95
8475 11706 4.464008 TCCTATGATGTGAATCAAAGGGC 58.536 43.478 0.00 0.00 33.83 5.19
8476 11707 4.079844 TCCTATGATGTGAATCAAAGGGCA 60.080 41.667 0.00 0.00 33.83 5.36
8477 11708 4.831155 CCTATGATGTGAATCAAAGGGCAT 59.169 41.667 0.00 0.00 33.83 4.40
8478 11709 4.931661 ATGATGTGAATCAAAGGGCATC 57.068 40.909 4.45 4.45 33.83 3.91
8479 11710 3.972133 TGATGTGAATCAAAGGGCATCT 58.028 40.909 10.68 0.00 35.22 2.90
8480 11711 3.949754 TGATGTGAATCAAAGGGCATCTC 59.050 43.478 10.68 0.00 35.22 2.75
8481 11712 2.726821 TGTGAATCAAAGGGCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
8482 11713 2.309755 TGTGAATCAAAGGGCATCTCCT 59.690 45.455 0.00 0.00 39.17 3.69
8491 11722 4.445557 AAGGGCATCTCCTTTCCTATTC 57.554 45.455 0.00 0.00 44.14 1.75
8492 11723 2.713708 AGGGCATCTCCTTTCCTATTCC 59.286 50.000 0.00 0.00 32.13 3.01
8493 11724 2.713708 GGGCATCTCCTTTCCTATTCCT 59.286 50.000 0.00 0.00 34.39 3.36
8494 11725 3.910627 GGGCATCTCCTTTCCTATTCCTA 59.089 47.826 0.00 0.00 34.39 2.94
8495 11726 4.263112 GGGCATCTCCTTTCCTATTCCTAC 60.263 50.000 0.00 0.00 34.39 3.18
8496 11727 4.595350 GGCATCTCCTTTCCTATTCCTACT 59.405 45.833 0.00 0.00 0.00 2.57
8497 11728 5.279758 GGCATCTCCTTTCCTATTCCTACTC 60.280 48.000 0.00 0.00 0.00 2.59
8498 11729 5.305644 GCATCTCCTTTCCTATTCCTACTCA 59.694 44.000 0.00 0.00 0.00 3.41
8499 11730 6.013812 GCATCTCCTTTCCTATTCCTACTCAT 60.014 42.308 0.00 0.00 0.00 2.90
8500 11731 7.179338 GCATCTCCTTTCCTATTCCTACTCATA 59.821 40.741 0.00 0.00 0.00 2.15
8501 11732 8.748412 CATCTCCTTTCCTATTCCTACTCATAG 58.252 40.741 0.00 0.00 0.00 2.23
8538 11769 9.911788 ACATGTTATCTCATTTCCTATGACTTT 57.088 29.630 0.00 0.00 0.00 2.66
8540 11771 8.964476 TGTTATCTCATTTCCTATGACTTTCC 57.036 34.615 0.00 0.00 0.00 3.13
8541 11772 8.772250 TGTTATCTCATTTCCTATGACTTTCCT 58.228 33.333 0.00 0.00 0.00 3.36
8546 11777 8.432805 TCTCATTTCCTATGACTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
8547 11778 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
8548 11779 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
8549 11780 9.495572 CATTTCCTATGACTTTCCTATTCCTAC 57.504 37.037 0.00 0.00 0.00 3.18
8550 11781 6.896021 TCCTATGACTTTCCTATTCCTACG 57.104 41.667 0.00 0.00 0.00 3.51
8551 11782 6.607970 TCCTATGACTTTCCTATTCCTACGA 58.392 40.000 0.00 0.00 0.00 3.43
8552 11783 7.239438 TCCTATGACTTTCCTATTCCTACGAT 58.761 38.462 0.00 0.00 0.00 3.73
8553 11784 7.728981 TCCTATGACTTTCCTATTCCTACGATT 59.271 37.037 0.00 0.00 0.00 3.34
8554 11785 8.368668 CCTATGACTTTCCTATTCCTACGATTT 58.631 37.037 0.00 0.00 0.00 2.17
8555 11786 9.765795 CTATGACTTTCCTATTCCTACGATTTT 57.234 33.333 0.00 0.00 0.00 1.82
8556 11787 8.664211 ATGACTTTCCTATTCCTACGATTTTC 57.336 34.615 0.00 0.00 0.00 2.29
8557 11788 7.046033 TGACTTTCCTATTCCTACGATTTTCC 58.954 38.462 0.00 0.00 0.00 3.13
8558 11789 7.093024 TGACTTTCCTATTCCTACGATTTTCCT 60.093 37.037 0.00 0.00 0.00 3.36
8559 11790 8.315220 ACTTTCCTATTCCTACGATTTTCCTA 57.685 34.615 0.00 0.00 0.00 2.94
8560 11791 8.202811 ACTTTCCTATTCCTACGATTTTCCTAC 58.797 37.037 0.00 0.00 0.00 3.18
8561 11792 6.661304 TCCTATTCCTACGATTTTCCTACC 57.339 41.667 0.00 0.00 0.00 3.18
8562 11793 5.541484 TCCTATTCCTACGATTTTCCTACCC 59.459 44.000 0.00 0.00 0.00 3.69
8563 11794 5.543020 CCTATTCCTACGATTTTCCTACCCT 59.457 44.000 0.00 0.00 0.00 4.34
8564 11795 6.723052 CCTATTCCTACGATTTTCCTACCCTA 59.277 42.308 0.00 0.00 0.00 3.53
8565 11796 7.399478 CCTATTCCTACGATTTTCCTACCCTAT 59.601 40.741 0.00 0.00 0.00 2.57
8566 11797 6.415206 TTCCTACGATTTTCCTACCCTATG 57.585 41.667 0.00 0.00 0.00 2.23
8567 11798 5.708544 TCCTACGATTTTCCTACCCTATGA 58.291 41.667 0.00 0.00 0.00 2.15
8568 11799 6.138263 TCCTACGATTTTCCTACCCTATGAA 58.862 40.000 0.00 0.00 0.00 2.57
8569 11800 6.612456 TCCTACGATTTTCCTACCCTATGAAA 59.388 38.462 0.00 0.00 0.00 2.69
8570 11801 6.704937 CCTACGATTTTCCTACCCTATGAAAC 59.295 42.308 0.00 0.00 0.00 2.78
8571 11802 6.057321 ACGATTTTCCTACCCTATGAAACA 57.943 37.500 0.00 0.00 0.00 2.83
8572 11803 6.478129 ACGATTTTCCTACCCTATGAAACAA 58.522 36.000 0.00 0.00 0.00 2.83
8573 11804 6.943718 ACGATTTTCCTACCCTATGAAACAAA 59.056 34.615 0.00 0.00 0.00 2.83
8574 11805 7.120726 ACGATTTTCCTACCCTATGAAACAAAG 59.879 37.037 0.00 0.00 0.00 2.77
8575 11806 7.415206 CGATTTTCCTACCCTATGAAACAAAGG 60.415 40.741 0.00 0.00 0.00 3.11
8576 11807 6.457159 TTTCCTACCCTATGAAACAAAGGA 57.543 37.500 0.00 0.00 31.64 3.36
8577 11808 5.693769 TCCTACCCTATGAAACAAAGGAG 57.306 43.478 0.00 0.00 31.64 3.69
8578 11809 4.473559 TCCTACCCTATGAAACAAAGGAGG 59.526 45.833 0.00 0.00 31.64 4.30
8579 11810 3.087370 ACCCTATGAAACAAAGGAGGC 57.913 47.619 0.00 0.00 31.64 4.70
8616 11847 4.759516 CCAAACGTGGCAAATACTAACT 57.240 40.909 0.00 0.00 38.35 2.24
8617 11848 5.116069 CCAAACGTGGCAAATACTAACTT 57.884 39.130 0.00 0.00 38.35 2.66
8619 11850 6.081693 CCAAACGTGGCAAATACTAACTTAC 58.918 40.000 0.00 0.00 38.35 2.34
8620 11851 6.293516 CCAAACGTGGCAAATACTAACTTACA 60.294 38.462 0.00 0.00 38.35 2.41
8621 11852 6.864360 AACGTGGCAAATACTAACTTACAA 57.136 33.333 0.00 0.00 0.00 2.41
8626 11857 7.148474 CGTGGCAAATACTAACTTACAATGAGT 60.148 37.037 0.00 0.00 0.00 3.41
8809 12040 3.007182 CCTGAAACTTCCAAATGCACCAT 59.993 43.478 0.00 0.00 0.00 3.55
8892 12123 2.493675 TCTCTGGAGAATCTTGGTGTCG 59.506 50.000 0.00 0.00 33.91 4.35
8968 12199 2.549282 CCACACGCGCACACTTAC 59.451 61.111 5.73 0.00 0.00 2.34
8974 12205 0.031585 ACGCGCACACTTACTGAAGA 59.968 50.000 5.73 0.00 36.45 2.87
8975 12206 0.710567 CGCGCACACTTACTGAAGAG 59.289 55.000 8.75 0.00 36.45 2.85
8976 12207 0.440371 GCGCACACTTACTGAAGAGC 59.560 55.000 0.30 0.00 36.45 4.09
8977 12208 1.783284 CGCACACTTACTGAAGAGCA 58.217 50.000 0.00 0.00 36.45 4.26
8978 12209 2.135139 CGCACACTTACTGAAGAGCAA 58.865 47.619 0.00 0.00 36.45 3.91
8979 12210 2.543848 CGCACACTTACTGAAGAGCAAA 59.456 45.455 0.00 0.00 36.45 3.68
8989 12220 7.550906 ACTTACTGAAGAGCAAAATAGATGGAC 59.449 37.037 0.00 0.00 36.45 4.02
8994 12225 5.441718 AGAGCAAAATAGATGGACCAAGA 57.558 39.130 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 256 6.382919 TTTCTTAATACCACCTAGCCAACT 57.617 37.500 0.00 0.00 0.00 3.16
405 407 6.485313 CCATTAGCGAGGTATTGGTGAAAATA 59.515 38.462 12.49 0.00 0.00 1.40
406 408 5.299279 CCATTAGCGAGGTATTGGTGAAAAT 59.701 40.000 12.49 0.00 0.00 1.82
407 409 4.638421 CCATTAGCGAGGTATTGGTGAAAA 59.362 41.667 12.49 0.00 0.00 2.29
408 410 4.196193 CCATTAGCGAGGTATTGGTGAAA 58.804 43.478 12.49 0.00 0.00 2.69
409 411 3.433031 CCCATTAGCGAGGTATTGGTGAA 60.433 47.826 16.88 0.00 0.00 3.18
619 1705 9.639601 GTTCTCTTCTTTCCTTTTTCTCAAAAA 57.360 29.630 0.00 0.00 37.99 1.94
620 1706 9.025041 AGTTCTCTTCTTTCCTTTTTCTCAAAA 57.975 29.630 0.00 0.00 0.00 2.44
621 1707 8.462016 CAGTTCTCTTCTTTCCTTTTTCTCAAA 58.538 33.333 0.00 0.00 0.00 2.69
622 1708 7.829211 TCAGTTCTCTTCTTTCCTTTTTCTCAA 59.171 33.333 0.00 0.00 0.00 3.02
623 1709 7.338710 TCAGTTCTCTTCTTTCCTTTTTCTCA 58.661 34.615 0.00 0.00 0.00 3.27
624 1710 7.793927 TCAGTTCTCTTCTTTCCTTTTTCTC 57.206 36.000 0.00 0.00 0.00 2.87
625 1711 7.777440 ACATCAGTTCTCTTCTTTCCTTTTTCT 59.223 33.333 0.00 0.00 0.00 2.52
626 1712 7.935520 ACATCAGTTCTCTTCTTTCCTTTTTC 58.064 34.615 0.00 0.00 0.00 2.29
627 1713 7.888250 ACATCAGTTCTCTTCTTTCCTTTTT 57.112 32.000 0.00 0.00 0.00 1.94
628 1714 7.682981 GCAACATCAGTTCTCTTCTTTCCTTTT 60.683 37.037 0.00 0.00 35.28 2.27
629 1715 6.238869 GCAACATCAGTTCTCTTCTTTCCTTT 60.239 38.462 0.00 0.00 35.28 3.11
630 1716 5.240403 GCAACATCAGTTCTCTTCTTTCCTT 59.760 40.000 0.00 0.00 35.28 3.36
631 1717 4.759183 GCAACATCAGTTCTCTTCTTTCCT 59.241 41.667 0.00 0.00 35.28 3.36
632 1718 4.759183 AGCAACATCAGTTCTCTTCTTTCC 59.241 41.667 0.00 0.00 35.28 3.13
633 1719 5.938438 AGCAACATCAGTTCTCTTCTTTC 57.062 39.130 0.00 0.00 35.28 2.62
634 1720 6.705863 AAAGCAACATCAGTTCTCTTCTTT 57.294 33.333 0.00 0.00 35.28 2.52
635 1721 6.096001 ACAAAAGCAACATCAGTTCTCTTCTT 59.904 34.615 0.00 0.00 35.28 2.52
636 1722 5.591877 ACAAAAGCAACATCAGTTCTCTTCT 59.408 36.000 0.00 0.00 35.28 2.85
637 1723 5.825507 ACAAAAGCAACATCAGTTCTCTTC 58.174 37.500 0.00 0.00 35.28 2.87
638 1724 5.841957 ACAAAAGCAACATCAGTTCTCTT 57.158 34.783 0.00 0.00 35.28 2.85
639 1725 6.551385 CTACAAAAGCAACATCAGTTCTCT 57.449 37.500 0.00 0.00 35.28 3.10
687 1773 5.969435 CGTTTTAGTTCAGTCTTTGGTTTCC 59.031 40.000 0.00 0.00 0.00 3.13
808 1894 3.161866 GAGGAGAGATGGATACCACCTC 58.838 54.545 4.12 4.12 35.60 3.85
871 2215 1.049289 GGTGACCGGGGCTAGAGAAT 61.049 60.000 6.32 0.00 0.00 2.40
1126 2471 8.175069 TCATCAAAAATTACGCACTGATACTTC 58.825 33.333 0.00 0.00 0.00 3.01
1171 2516 2.290641 TGCTGGAGGCGGAAAATTCTAA 60.291 45.455 0.00 0.00 45.43 2.10
1224 2569 2.358939 TTACTTCGGTTCGGAAGCTC 57.641 50.000 16.87 0.00 45.78 4.09
1296 2641 7.154656 GGCAGTTTTCCTCAATTCTTTTACAT 58.845 34.615 0.00 0.00 0.00 2.29
1299 2644 5.278758 CGGGCAGTTTTCCTCAATTCTTTTA 60.279 40.000 0.00 0.00 0.00 1.52
1435 2781 1.153208 CTCCAGAGTGCCTGCATCC 60.153 63.158 0.00 0.00 41.57 3.51
1504 2850 1.737355 TTTCCAAGCTGCACACTGCC 61.737 55.000 1.02 0.00 44.23 4.85
1590 2936 4.373156 ACAGGGCAAGTTGTAGATTTCT 57.627 40.909 4.48 0.00 0.00 2.52
1696 3042 6.318900 AGAAAAATAGCCCAGTAATGCTACAC 59.681 38.462 0.00 0.00 42.43 2.90
1731 3077 0.166597 CACAATGCAGGTACAGTGCG 59.833 55.000 13.12 3.92 44.35 5.34
1818 3164 6.238022 GGCTTGCCTACTAACTTAATACAACG 60.238 42.308 4.11 0.00 0.00 4.10
1821 3167 6.155565 TCTGGCTTGCCTACTAACTTAATACA 59.844 38.462 13.18 0.00 0.00 2.29
1906 3252 6.645884 AAACTCATGTTAGGGGGTTATACA 57.354 37.500 0.00 0.00 34.96 2.29
1907 3253 7.174426 GCATAAACTCATGTTAGGGGGTTATAC 59.826 40.741 0.00 0.00 34.96 1.47
1946 3292 1.704641 TAGCTACATGGATGGCGACT 58.295 50.000 0.00 0.00 0.00 4.18
1961 3307 7.775093 TGGATGTTAACAGAAGCAATAATAGCT 59.225 33.333 14.65 0.00 45.97 3.32
1962 3308 7.930217 TGGATGTTAACAGAAGCAATAATAGC 58.070 34.615 14.65 0.00 0.00 2.97
1980 3327 4.593956 GAAGAAAGGGTGAGATGGATGTT 58.406 43.478 0.00 0.00 0.00 2.71
2028 3375 0.252467 AGACCTGGCTCTAGCACCTT 60.252 55.000 4.07 0.00 44.36 3.50
2031 3378 0.742635 GCAAGACCTGGCTCTAGCAC 60.743 60.000 4.07 0.00 44.36 4.40
2034 3381 2.093288 TGATTGCAAGACCTGGCTCTAG 60.093 50.000 4.94 0.00 0.00 2.43
2051 3398 6.764085 CCAAACATGTATTGGCATCATTGATT 59.236 34.615 19.85 0.00 40.78 2.57
2086 3433 1.456518 CAGGAGCCCGAGGAGATCA 60.457 63.158 0.00 0.00 0.00 2.92
2245 3593 4.617959 TCTACGGCTGTTATACATTGAGC 58.382 43.478 1.99 0.00 0.00 4.26
2251 3599 4.459390 TTGCTTCTACGGCTGTTATACA 57.541 40.909 1.99 0.00 0.00 2.29
2382 3730 5.717078 ACTTTCACTATGAACTACGACCA 57.283 39.130 0.00 0.00 35.89 4.02
2439 3787 6.985188 TCAATAGGCAGTACTTCAACAATC 57.015 37.500 0.00 0.00 0.00 2.67
2581 3930 1.608283 GGCCCACTTCACAGTACTCAC 60.608 57.143 0.00 0.00 0.00 3.51
2616 3965 8.615705 TCCTTATTCTAGCATCCTGTATCTCTA 58.384 37.037 0.00 0.00 0.00 2.43
2968 4422 1.854743 CTGTTATCGACGTGGCAGATG 59.145 52.381 0.00 0.00 0.00 2.90
3027 4482 7.837863 TCCCTGTTTCTATAGTAAGACACAAG 58.162 38.462 0.00 0.00 36.14 3.16
3028 4483 7.786046 TCCCTGTTTCTATAGTAAGACACAA 57.214 36.000 0.00 0.00 36.14 3.33
3101 4557 8.865090 AGATACATCAGGTGATAAGGTAAAGAG 58.135 37.037 0.00 0.00 32.63 2.85
3111 4567 5.736207 GCGAACACAGATACATCAGGTGATA 60.736 44.000 16.25 0.00 37.61 2.15
3398 4854 6.314400 TCTTGTAAGAGTTACGTTGCAAGTTT 59.686 34.615 20.79 0.00 43.15 2.66
3404 4860 8.277713 TGTAAATTCTTGTAAGAGTTACGTTGC 58.722 33.333 16.81 0.00 38.67 4.17
3435 4891 4.392940 ACATCTAGGCCATAATTGCTGAC 58.607 43.478 5.01 0.00 0.00 3.51
3436 4892 4.712051 ACATCTAGGCCATAATTGCTGA 57.288 40.909 5.01 0.00 0.00 4.26
3437 4893 5.300034 TGAAACATCTAGGCCATAATTGCTG 59.700 40.000 5.01 0.00 0.00 4.41
3438 4894 5.448654 TGAAACATCTAGGCCATAATTGCT 58.551 37.500 5.01 0.00 0.00 3.91
3439 4895 5.772825 TGAAACATCTAGGCCATAATTGC 57.227 39.130 5.01 0.00 0.00 3.56
3440 4896 8.174733 AGATTGAAACATCTAGGCCATAATTG 57.825 34.615 5.01 0.00 0.00 2.32
3441 4897 8.773033 AAGATTGAAACATCTAGGCCATAATT 57.227 30.769 5.01 0.00 0.00 1.40
3442 4898 8.000709 TGAAGATTGAAACATCTAGGCCATAAT 58.999 33.333 5.01 0.00 0.00 1.28
3443 4899 7.345691 TGAAGATTGAAACATCTAGGCCATAA 58.654 34.615 5.01 0.00 0.00 1.90
3592 5048 8.638873 CCCCTATGTAAAAACTCAAACTCTTTT 58.361 33.333 0.00 0.00 0.00 2.27
3593 5049 8.002459 TCCCCTATGTAAAAACTCAAACTCTTT 58.998 33.333 0.00 0.00 0.00 2.52
3594 5050 7.523415 TCCCCTATGTAAAAACTCAAACTCTT 58.477 34.615 0.00 0.00 0.00 2.85
3595 5051 7.086685 TCCCCTATGTAAAAACTCAAACTCT 57.913 36.000 0.00 0.00 0.00 3.24
3596 5052 7.610305 TCATCCCCTATGTAAAAACTCAAACTC 59.390 37.037 0.00 0.00 36.89 3.01
3597 5053 7.466804 TCATCCCCTATGTAAAAACTCAAACT 58.533 34.615 0.00 0.00 36.89 2.66
3598 5054 7.696992 TCATCCCCTATGTAAAAACTCAAAC 57.303 36.000 0.00 0.00 36.89 2.93
3599 5055 8.748412 CATTCATCCCCTATGTAAAAACTCAAA 58.252 33.333 0.00 0.00 36.89 2.69
3600 5056 7.341769 CCATTCATCCCCTATGTAAAAACTCAA 59.658 37.037 0.00 0.00 36.89 3.02
3601 5057 6.833416 CCATTCATCCCCTATGTAAAAACTCA 59.167 38.462 0.00 0.00 36.89 3.41
3801 6075 4.524802 TGGCATTATCATTCCCTGTTCT 57.475 40.909 0.00 0.00 0.00 3.01
3823 6097 6.017192 TGCATTTTTCAACGAAGAGAGAATCA 60.017 34.615 0.00 0.00 37.82 2.57
3893 6168 6.861055 GTGACCAACACGTATTTTGATGATTT 59.139 34.615 5.52 0.00 39.78 2.17
3908 6183 2.149722 AGCATGAGCAGTGACCAACAC 61.150 52.381 0.00 0.00 45.49 3.32
3947 6222 5.987098 ACAGAGATCAAACAGTGCAGATAT 58.013 37.500 0.00 0.00 0.00 1.63
3974 6249 5.500234 TGCAAGCCACTAATAAACAGAGAT 58.500 37.500 0.00 0.00 0.00 2.75
3975 6250 4.905429 TGCAAGCCACTAATAAACAGAGA 58.095 39.130 0.00 0.00 0.00 3.10
3976 6251 5.124457 ACATGCAAGCCACTAATAAACAGAG 59.876 40.000 0.00 0.00 0.00 3.35
3977 6252 5.009631 ACATGCAAGCCACTAATAAACAGA 58.990 37.500 0.00 0.00 0.00 3.41
3978 6253 5.314923 ACATGCAAGCCACTAATAAACAG 57.685 39.130 0.00 0.00 0.00 3.16
3979 6254 5.336372 GGAACATGCAAGCCACTAATAAACA 60.336 40.000 0.00 0.00 0.00 2.83
3980 6255 5.102313 GGAACATGCAAGCCACTAATAAAC 58.898 41.667 0.00 0.00 0.00 2.01
3981 6256 4.159506 GGGAACATGCAAGCCACTAATAAA 59.840 41.667 0.00 0.00 0.00 1.40
3982 6257 3.699038 GGGAACATGCAAGCCACTAATAA 59.301 43.478 0.00 0.00 0.00 1.40
3983 6258 3.053693 AGGGAACATGCAAGCCACTAATA 60.054 43.478 0.00 0.00 0.00 0.98
3984 6259 2.102578 GGGAACATGCAAGCCACTAAT 58.897 47.619 0.00 0.00 0.00 1.73
4042 6317 4.600012 AAAACAGAAAGTGTGTGACTCG 57.400 40.909 0.00 0.00 40.26 4.18
4051 6326 7.118390 CAGAGGGAGTACATAAAACAGAAAGTG 59.882 40.741 0.00 0.00 0.00 3.16
4065 6340 8.707796 CTATATTTAGGAACAGAGGGAGTACA 57.292 38.462 0.00 0.00 0.00 2.90
4089 6364 9.667107 TTCATATTGAAATCTCTAAAACGACCT 57.333 29.630 0.00 0.00 32.71 3.85
4090 6365 9.704098 GTTCATATTGAAATCTCTAAAACGACC 57.296 33.333 0.00 0.00 38.22 4.79
4099 6374 9.698309 CCGTATGTAGTTCATATTGAAATCTCT 57.302 33.333 0.00 0.00 38.22 3.10
4100 6375 9.692749 TCCGTATGTAGTTCATATTGAAATCTC 57.307 33.333 0.00 0.00 38.22 2.75
4103 6378 9.778741 ACATCCGTATGTAGTTCATATTGAAAT 57.221 29.630 0.00 0.00 44.66 2.17
4148 6423 8.911247 ACAAAACAAAAAGAGTGAATCTACAC 57.089 30.769 0.00 0.00 37.23 2.90
4155 6430 9.997482 GACTACATACAAAACAAAAAGAGTGAA 57.003 29.630 0.00 0.00 0.00 3.18
4156 6431 8.617809 GGACTACATACAAAACAAAAAGAGTGA 58.382 33.333 0.00 0.00 0.00 3.41
4157 6432 8.402472 TGGACTACATACAAAACAAAAAGAGTG 58.598 33.333 0.00 0.00 0.00 3.51
4158 6433 8.514330 TGGACTACATACAAAACAAAAAGAGT 57.486 30.769 0.00 0.00 0.00 3.24
4164 6439 9.521841 TCCAATATGGACTACATACAAAACAAA 57.478 29.630 0.00 0.00 42.67 2.83
4195 6470 9.694137 CCCGTTCCTAAATATAAGTCTCTTTAG 57.306 37.037 0.00 0.00 33.16 1.85
4196 6471 8.645110 CCCCGTTCCTAAATATAAGTCTCTTTA 58.355 37.037 0.00 0.00 0.00 1.85
4197 6472 7.126879 ACCCCGTTCCTAAATATAAGTCTCTTT 59.873 37.037 0.00 0.00 0.00 2.52
4198 6473 6.614496 ACCCCGTTCCTAAATATAAGTCTCTT 59.386 38.462 0.00 0.00 0.00 2.85
4199 6474 6.041751 CACCCCGTTCCTAAATATAAGTCTCT 59.958 42.308 0.00 0.00 0.00 3.10
4200 6475 6.183360 ACACCCCGTTCCTAAATATAAGTCTC 60.183 42.308 0.00 0.00 0.00 3.36
4201 6476 5.664457 ACACCCCGTTCCTAAATATAAGTCT 59.336 40.000 0.00 0.00 0.00 3.24
4202 6477 5.922053 ACACCCCGTTCCTAAATATAAGTC 58.078 41.667 0.00 0.00 0.00 3.01
4203 6478 5.963214 ACACCCCGTTCCTAAATATAAGT 57.037 39.130 0.00 0.00 0.00 2.24
4204 6479 7.059202 ACTACACCCCGTTCCTAAATATAAG 57.941 40.000 0.00 0.00 0.00 1.73
4205 6480 7.436320 AACTACACCCCGTTCCTAAATATAA 57.564 36.000 0.00 0.00 0.00 0.98
4206 6481 7.092935 ACAAACTACACCCCGTTCCTAAATATA 60.093 37.037 0.00 0.00 0.00 0.86
4207 6482 5.963214 AACTACACCCCGTTCCTAAATAT 57.037 39.130 0.00 0.00 0.00 1.28
4208 6483 5.012975 ACAAACTACACCCCGTTCCTAAATA 59.987 40.000 0.00 0.00 0.00 1.40
4209 6484 4.202493 ACAAACTACACCCCGTTCCTAAAT 60.202 41.667 0.00 0.00 0.00 1.40
4210 6485 3.136260 ACAAACTACACCCCGTTCCTAAA 59.864 43.478 0.00 0.00 0.00 1.85
4211 6486 2.705127 ACAAACTACACCCCGTTCCTAA 59.295 45.455 0.00 0.00 0.00 2.69
4212 6487 2.328319 ACAAACTACACCCCGTTCCTA 58.672 47.619 0.00 0.00 0.00 2.94
4213 6488 1.134228 ACAAACTACACCCCGTTCCT 58.866 50.000 0.00 0.00 0.00 3.36
4214 6489 2.037641 ACTACAAACTACACCCCGTTCC 59.962 50.000 0.00 0.00 0.00 3.62
4215 6490 3.062042 CACTACAAACTACACCCCGTTC 58.938 50.000 0.00 0.00 0.00 3.95
4216 6491 2.435437 ACACTACAAACTACACCCCGTT 59.565 45.455 0.00 0.00 0.00 4.44
4217 6492 2.041701 ACACTACAAACTACACCCCGT 58.958 47.619 0.00 0.00 0.00 5.28
4218 6493 2.825861 ACACTACAAACTACACCCCG 57.174 50.000 0.00 0.00 0.00 5.73
4219 6494 4.879197 AGTACACTACAAACTACACCCC 57.121 45.455 0.00 0.00 0.00 4.95
4220 6495 5.464389 CACAAGTACACTACAAACTACACCC 59.536 44.000 0.00 0.00 0.00 4.61
4221 6496 6.044682 ACACAAGTACACTACAAACTACACC 58.955 40.000 0.00 0.00 0.00 4.16
4222 6497 7.529880 AACACAAGTACACTACAAACTACAC 57.470 36.000 0.00 0.00 0.00 2.90
4332 6607 1.620524 CCTGACCCATTGCCATCCTTT 60.621 52.381 0.00 0.00 0.00 3.11
4489 6765 8.561536 TTTATATGTCTTGAGAGGACCCAATA 57.438 34.615 0.00 0.00 33.22 1.90
4557 6834 2.069776 AGCCTAGCTTGCCACAAGA 58.930 52.632 11.38 0.00 33.89 3.02
4632 6915 5.588958 TGACTCGTCATTCTCATTCTCAT 57.411 39.130 0.00 0.00 34.14 2.90
4773 7061 7.883391 TGTCCCACTTCAATTTTACACTTTA 57.117 32.000 0.00 0.00 0.00 1.85
4788 7076 1.202806 CCACAGTCACATGTCCCACTT 60.203 52.381 0.00 0.00 0.00 3.16
5062 7873 6.978080 GGCAAAACTAACTGTGAATTTCAGAA 59.022 34.615 15.27 0.00 36.81 3.02
5067 7878 7.913674 TTTTGGCAAAACTAACTGTGAATTT 57.086 28.000 20.81 0.00 0.00 1.82
5162 7973 4.473199 GTTCAAAAGGTTCCTCGCATAAC 58.527 43.478 0.00 0.00 0.00 1.89
5222 8033 1.203001 GGTCCAAGTGGGGAATCAACA 60.203 52.381 0.00 0.00 39.05 3.33
5582 8393 0.392998 CAAGGGAATCCTCACGGTGG 60.393 60.000 8.50 0.00 44.07 4.61
5601 8412 2.768769 GGAGGGTAGACCAGGGCC 60.769 72.222 0.00 0.00 43.89 5.80
5757 8568 5.120053 AACAAAAGGTTTCGTGCTTGAAAAG 59.880 36.000 5.66 0.00 41.75 2.27
6029 8840 3.128589 TGAGGATTTTTCGCTGCATAACC 59.871 43.478 0.00 0.00 0.00 2.85
6037 8848 2.820197 GGGAGTTTGAGGATTTTTCGCT 59.180 45.455 0.00 0.00 0.00 4.93
6157 8968 4.261072 GCCATCATACTTTCAGACAGCATG 60.261 45.833 0.00 0.00 46.00 4.06
6248 9059 3.194116 CCTACTTTGCCATCATGTGCTTT 59.806 43.478 0.00 0.00 0.00 3.51
6329 9140 4.323792 CCCATCTTTTGCTCCTCTGTCTAA 60.324 45.833 0.00 0.00 0.00 2.10
6450 9261 3.693085 ACAGAGCATTTGCACCATAGAAG 59.307 43.478 5.20 0.00 45.16 2.85
6547 9358 0.741221 CCCAGCGAGTACTTTGAGGC 60.741 60.000 0.00 0.00 0.00 4.70
6746 9557 3.997021 CCAGCCAAGATATATCCAACGAC 59.003 47.826 9.18 0.00 0.00 4.34
6748 9559 2.744202 GCCAGCCAAGATATATCCAACG 59.256 50.000 9.18 0.00 0.00 4.10
6754 9565 4.718961 AGTTTTCGCCAGCCAAGATATAT 58.281 39.130 0.00 0.00 0.00 0.86
7051 9862 1.821216 ACTTAAGTTGCATGTCCCCG 58.179 50.000 1.12 0.00 0.00 5.73
7139 9950 3.454858 ACCCTTCTCCAAGAGCTTGATA 58.545 45.455 11.61 0.00 42.93 2.15
7248 10059 2.104792 TGATACTCAAGGCCAGGTATGC 59.895 50.000 5.01 3.51 0.00 3.14
7300 10111 0.040499 GGCCAAACCTACCCAATCCA 59.960 55.000 0.00 0.00 34.51 3.41
7357 10580 6.077838 GTGAGCTCGTAACTAAAACAAATGG 58.922 40.000 9.64 0.00 0.00 3.16
7367 10590 4.579454 AACAACTGTGAGCTCGTAACTA 57.421 40.909 9.64 0.00 0.00 2.24
7369 10592 4.271687 CAAAACAACTGTGAGCTCGTAAC 58.728 43.478 9.64 2.20 0.00 2.50
7376 10599 1.843992 CAGGCAAAACAACTGTGAGC 58.156 50.000 0.00 0.00 0.00 4.26
7586 10813 5.916318 TCAAAATCTTGTTGTGCATCCTTT 58.084 33.333 0.00 0.00 33.94 3.11
7608 10835 8.475331 TCTAGACAGTTCCAATAAAACGAATC 57.525 34.615 0.00 0.00 0.00 2.52
7745 10973 2.623878 TCTTTAGTGGTTGGTTGCGA 57.376 45.000 0.00 0.00 0.00 5.10
7789 11020 5.660864 ACAAACAGGGATTTGGGTTATATGG 59.339 40.000 3.52 0.00 42.74 2.74
7952 11183 5.153513 CCCAACATTAACTGAAACATGTCG 58.846 41.667 0.00 0.00 0.00 4.35
7962 11193 3.355378 TGGATGAGCCCAACATTAACTG 58.645 45.455 0.00 0.00 34.97 3.16
8020 11251 4.665833 TGCTACTGTACCGATAAGCAAT 57.334 40.909 9.78 0.00 37.05 3.56
8160 11391 9.083422 CTTATATTCTGATACAACCTCCTGAGA 57.917 37.037 0.00 0.00 0.00 3.27
8197 11428 2.169769 CCTAAATACTGGGTCGAAGCCA 59.830 50.000 5.81 5.81 38.74 4.75
8250 11481 6.443934 AGTTTGTTGTGTACTTGTATTGCA 57.556 33.333 0.00 0.00 0.00 4.08
8268 11499 2.876581 ACCAAAGGAGGCCTTAGTTTG 58.123 47.619 20.62 20.62 43.92 2.93
8272 11503 4.518249 CTCTAAACCAAAGGAGGCCTTAG 58.482 47.826 6.77 0.67 43.92 2.18
8273 11504 3.265995 CCTCTAAACCAAAGGAGGCCTTA 59.734 47.826 6.77 0.00 43.92 2.69
8275 11506 1.636003 CCTCTAAACCAAAGGAGGCCT 59.364 52.381 3.86 3.86 38.82 5.19
8276 11507 1.633945 TCCTCTAAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 43.46 5.19
8277 11508 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
8278 11509 5.443230 AGATTCCTCTAAACCAAAGGAGG 57.557 43.478 0.00 0.00 44.69 4.30
8279 11510 6.241645 ACAAGATTCCTCTAAACCAAAGGAG 58.758 40.000 0.00 0.00 40.21 3.69
8280 11511 6.200878 ACAAGATTCCTCTAAACCAAAGGA 57.799 37.500 0.00 0.00 37.42 3.36
8281 11512 6.599638 CCTACAAGATTCCTCTAAACCAAAGG 59.400 42.308 0.00 0.00 0.00 3.11
8282 11513 7.394816 TCCTACAAGATTCCTCTAAACCAAAG 58.605 38.462 0.00 0.00 0.00 2.77
8283 11514 7.324388 TCCTACAAGATTCCTCTAAACCAAA 57.676 36.000 0.00 0.00 0.00 3.28
8284 11515 6.945636 TCCTACAAGATTCCTCTAAACCAA 57.054 37.500 0.00 0.00 0.00 3.67
8285 11516 6.945636 TTCCTACAAGATTCCTCTAAACCA 57.054 37.500 0.00 0.00 0.00 3.67
8286 11517 8.809468 AAATTCCTACAAGATTCCTCTAAACC 57.191 34.615 0.00 0.00 0.00 3.27
8287 11518 9.449719 TGAAATTCCTACAAGATTCCTCTAAAC 57.550 33.333 0.00 0.00 0.00 2.01
8291 11522 8.435982 CCTATGAAATTCCTACAAGATTCCTCT 58.564 37.037 0.00 0.00 0.00 3.69
8292 11523 8.432805 TCCTATGAAATTCCTACAAGATTCCTC 58.567 37.037 0.00 0.00 0.00 3.71
8293 11524 8.337118 TCCTATGAAATTCCTACAAGATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
8332 11563 9.104410 ACCAAAGGGCTCTAAAGGAATTTTTCC 62.104 40.741 5.94 0.00 44.02 3.13
8333 11564 6.166279 CCAAAGGGCTCTAAAGGAATTTTTC 58.834 40.000 0.00 0.00 0.00 2.29
8334 11565 5.606749 ACCAAAGGGCTCTAAAGGAATTTTT 59.393 36.000 5.94 0.00 37.90 1.94
8335 11566 5.155161 ACCAAAGGGCTCTAAAGGAATTTT 58.845 37.500 5.94 0.00 37.90 1.82
8336 11567 4.752063 ACCAAAGGGCTCTAAAGGAATTT 58.248 39.130 5.94 0.00 37.90 1.82
8337 11568 4.404185 ACCAAAGGGCTCTAAAGGAATT 57.596 40.909 5.94 0.00 37.90 2.17
8338 11569 4.404185 AACCAAAGGGCTCTAAAGGAAT 57.596 40.909 5.94 0.00 37.90 3.01
8339 11570 3.895041 CAAACCAAAGGGCTCTAAAGGAA 59.105 43.478 5.94 0.00 37.90 3.36
8340 11571 3.117284 ACAAACCAAAGGGCTCTAAAGGA 60.117 43.478 5.94 0.00 37.90 3.36
8341 11572 3.230976 ACAAACCAAAGGGCTCTAAAGG 58.769 45.455 0.00 0.00 37.90 3.11
8342 11573 4.459337 CCTACAAACCAAAGGGCTCTAAAG 59.541 45.833 0.00 0.00 37.90 1.85
8343 11574 4.105057 TCCTACAAACCAAAGGGCTCTAAA 59.895 41.667 0.00 0.00 37.90 1.85
8344 11575 3.653836 TCCTACAAACCAAAGGGCTCTAA 59.346 43.478 0.00 0.00 37.90 2.10
8345 11576 3.253220 TCCTACAAACCAAAGGGCTCTA 58.747 45.455 0.00 0.00 37.90 2.43
8346 11577 2.062636 TCCTACAAACCAAAGGGCTCT 58.937 47.619 0.00 0.00 37.90 4.09
8347 11578 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
8348 11579 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
8349 11580 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
8350 11581 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
8351 11582 5.105351 GGATTCCATTCCTACAAACCAAAGG 60.105 44.000 0.00 0.00 32.68 3.11
8352 11583 5.716703 AGGATTCCATTCCTACAAACCAAAG 59.283 40.000 5.29 0.00 44.50 2.77
8353 11584 5.650283 AGGATTCCATTCCTACAAACCAAA 58.350 37.500 5.29 0.00 44.50 3.28
8354 11585 5.269554 AGGATTCCATTCCTACAAACCAA 57.730 39.130 5.29 0.00 44.50 3.67
8355 11586 4.946160 AGGATTCCATTCCTACAAACCA 57.054 40.909 5.29 0.00 44.50 3.67
8364 11595 7.922382 TCTCCATAAGAATAGGATTCCATTCC 58.078 38.462 17.23 0.00 32.61 3.01
8365 11596 9.799106 TTTCTCCATAAGAATAGGATTCCATTC 57.201 33.333 5.29 11.49 43.50 2.67
8368 11599 9.799106 GAATTTCTCCATAAGAATAGGATTCCA 57.201 33.333 5.29 0.00 43.50 3.53
8373 11604 9.230477 AGGAAGAATTTCTCCATAAGAATAGGA 57.770 33.333 13.77 0.00 43.50 2.94
8378 11609 9.230477 AGGATAGGAAGAATTTCTCCATAAGAA 57.770 33.333 13.77 0.00 42.35 2.52
8379 11610 8.805145 AGGATAGGAAGAATTTCTCCATAAGA 57.195 34.615 13.77 0.00 31.06 2.10
8380 11611 8.100164 GGAGGATAGGAAGAATTTCTCCATAAG 58.900 40.741 13.77 0.00 39.30 1.73
8381 11612 7.572485 TGGAGGATAGGAAGAATTTCTCCATAA 59.428 37.037 13.77 3.90 42.91 1.90
8382 11613 7.082316 TGGAGGATAGGAAGAATTTCTCCATA 58.918 38.462 13.77 0.00 42.91 2.74
8383 11614 5.913534 TGGAGGATAGGAAGAATTTCTCCAT 59.086 40.000 13.77 0.00 42.91 3.41
8384 11615 5.131142 GTGGAGGATAGGAAGAATTTCTCCA 59.869 44.000 13.77 0.00 44.77 3.86
8385 11616 5.131142 TGTGGAGGATAGGAAGAATTTCTCC 59.869 44.000 0.00 3.47 39.77 3.71
8386 11617 6.240549 TGTGGAGGATAGGAAGAATTTCTC 57.759 41.667 0.00 0.00 33.68 2.87
8387 11618 6.838401 ATGTGGAGGATAGGAAGAATTTCT 57.162 37.500 0.00 0.00 33.68 2.52
8388 11619 7.557719 TGAAATGTGGAGGATAGGAAGAATTTC 59.442 37.037 0.00 0.00 33.19 2.17
8389 11620 7.413446 TGAAATGTGGAGGATAGGAAGAATTT 58.587 34.615 0.00 0.00 0.00 1.82
8390 11621 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
8391 11622 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
8392 11623 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
8393 11624 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
8394 11625 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
8395 11626 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
8396 11627 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
8397 11628 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
8398 11629 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
8400 11631 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
8401 11632 8.966868 GTTTATTTTCCTATGAAATGTGGAGGA 58.033 33.333 0.00 0.00 40.08 3.71
8402 11633 8.748412 TGTTTATTTTCCTATGAAATGTGGAGG 58.252 33.333 0.00 0.00 40.08 4.30
8412 11643 9.793259 CCTAGGCTAATGTTTATTTTCCTATGA 57.207 33.333 0.00 0.00 33.00 2.15
8413 11644 8.515414 GCCTAGGCTAATGTTTATTTTCCTATG 58.485 37.037 27.17 0.00 38.26 2.23
8414 11645 8.637196 GCCTAGGCTAATGTTTATTTTCCTAT 57.363 34.615 27.17 0.00 38.26 2.57
8416 11647 6.961360 GCCTAGGCTAATGTTTATTTTCCT 57.039 37.500 27.17 0.00 38.26 3.36
8455 11686 5.768662 AGATGCCCTTTGATTCACATCATAG 59.231 40.000 13.54 1.71 39.28 2.23
8456 11687 5.698104 AGATGCCCTTTGATTCACATCATA 58.302 37.500 13.54 0.00 39.28 2.15
8457 11688 4.543689 AGATGCCCTTTGATTCACATCAT 58.456 39.130 13.54 2.83 39.28 2.45
8458 11689 3.949754 GAGATGCCCTTTGATTCACATCA 59.050 43.478 13.54 0.00 37.67 3.07
8459 11690 3.317430 GGAGATGCCCTTTGATTCACATC 59.683 47.826 6.23 6.23 35.31 3.06
8460 11691 3.053095 AGGAGATGCCCTTTGATTCACAT 60.053 43.478 0.00 0.00 37.37 3.21
8461 11692 2.309755 AGGAGATGCCCTTTGATTCACA 59.690 45.455 0.00 0.00 37.37 3.58
8462 11693 3.010200 AGGAGATGCCCTTTGATTCAC 57.990 47.619 0.00 0.00 37.37 3.18
8463 11694 3.744940 AAGGAGATGCCCTTTGATTCA 57.255 42.857 0.00 0.00 43.68 2.57
8471 11702 2.713708 GGAATAGGAAAGGAGATGCCCT 59.286 50.000 0.00 0.00 38.42 5.19
8472 11703 2.713708 AGGAATAGGAAAGGAGATGCCC 59.286 50.000 0.00 0.00 37.37 5.36
8473 11704 4.595350 AGTAGGAATAGGAAAGGAGATGCC 59.405 45.833 0.00 0.00 0.00 4.40
8474 11705 5.305644 TGAGTAGGAATAGGAAAGGAGATGC 59.694 44.000 0.00 0.00 0.00 3.91
8475 11706 6.985653 TGAGTAGGAATAGGAAAGGAGATG 57.014 41.667 0.00 0.00 0.00 2.90
8476 11707 8.893563 CTATGAGTAGGAATAGGAAAGGAGAT 57.106 38.462 0.00 0.00 0.00 2.75
8512 11743 9.911788 AAAGTCATAGGAAATGAGATAACATGT 57.088 29.630 0.00 0.00 0.00 3.21
8514 11745 9.566432 GGAAAGTCATAGGAAATGAGATAACAT 57.434 33.333 0.00 0.00 0.00 2.71
8515 11746 8.772250 AGGAAAGTCATAGGAAATGAGATAACA 58.228 33.333 0.00 0.00 0.00 2.41
8520 11751 8.432805 GGAATAGGAAAGTCATAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
8521 11752 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
8522 11753 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
8523 11754 9.495572 GTAGGAATAGGAAAGTCATAGGAAATG 57.504 37.037 0.00 0.00 0.00 2.32
8524 11755 8.368668 CGTAGGAATAGGAAAGTCATAGGAAAT 58.631 37.037 0.00 0.00 0.00 2.17
8525 11756 7.562454 TCGTAGGAATAGGAAAGTCATAGGAAA 59.438 37.037 0.00 0.00 0.00 3.13
8526 11757 7.064866 TCGTAGGAATAGGAAAGTCATAGGAA 58.935 38.462 0.00 0.00 0.00 3.36
8527 11758 6.607970 TCGTAGGAATAGGAAAGTCATAGGA 58.392 40.000 0.00 0.00 0.00 2.94
8528 11759 6.896021 TCGTAGGAATAGGAAAGTCATAGG 57.104 41.667 0.00 0.00 0.00 2.57
8529 11760 9.765795 AAAATCGTAGGAATAGGAAAGTCATAG 57.234 33.333 0.00 0.00 0.00 2.23
8530 11761 9.760077 GAAAATCGTAGGAATAGGAAAGTCATA 57.240 33.333 0.00 0.00 0.00 2.15
8531 11762 7.715686 GGAAAATCGTAGGAATAGGAAAGTCAT 59.284 37.037 0.00 0.00 0.00 3.06
8532 11763 7.046033 GGAAAATCGTAGGAATAGGAAAGTCA 58.954 38.462 0.00 0.00 0.00 3.41
8533 11764 7.273712 AGGAAAATCGTAGGAATAGGAAAGTC 58.726 38.462 0.00 0.00 0.00 3.01
8534 11765 7.196637 AGGAAAATCGTAGGAATAGGAAAGT 57.803 36.000 0.00 0.00 0.00 2.66
8535 11766 7.656542 GGTAGGAAAATCGTAGGAATAGGAAAG 59.343 40.741 0.00 0.00 0.00 2.62
8536 11767 7.419403 GGGTAGGAAAATCGTAGGAATAGGAAA 60.419 40.741 0.00 0.00 0.00 3.13
8537 11768 6.042437 GGGTAGGAAAATCGTAGGAATAGGAA 59.958 42.308 0.00 0.00 0.00 3.36
8538 11769 5.541484 GGGTAGGAAAATCGTAGGAATAGGA 59.459 44.000 0.00 0.00 0.00 2.94
8539 11770 5.543020 AGGGTAGGAAAATCGTAGGAATAGG 59.457 44.000 0.00 0.00 0.00 2.57
8540 11771 6.667558 AGGGTAGGAAAATCGTAGGAATAG 57.332 41.667 0.00 0.00 0.00 1.73
8541 11772 7.951806 TCATAGGGTAGGAAAATCGTAGGAATA 59.048 37.037 0.00 0.00 0.00 1.75
8542 11773 6.785963 TCATAGGGTAGGAAAATCGTAGGAAT 59.214 38.462 0.00 0.00 0.00 3.01
8543 11774 6.138263 TCATAGGGTAGGAAAATCGTAGGAA 58.862 40.000 0.00 0.00 0.00 3.36
8544 11775 5.708544 TCATAGGGTAGGAAAATCGTAGGA 58.291 41.667 0.00 0.00 0.00 2.94
8545 11776 6.415206 TTCATAGGGTAGGAAAATCGTAGG 57.585 41.667 0.00 0.00 0.00 3.18
8546 11777 7.270047 TGTTTCATAGGGTAGGAAAATCGTAG 58.730 38.462 0.00 0.00 39.73 3.51
8547 11778 7.185318 TGTTTCATAGGGTAGGAAAATCGTA 57.815 36.000 0.00 0.00 39.73 3.43
8548 11779 6.057321 TGTTTCATAGGGTAGGAAAATCGT 57.943 37.500 0.00 0.00 39.73 3.73
8549 11780 6.995511 TTGTTTCATAGGGTAGGAAAATCG 57.004 37.500 0.00 0.00 39.73 3.34
8550 11781 7.614192 TCCTTTGTTTCATAGGGTAGGAAAATC 59.386 37.037 6.45 0.00 39.73 2.17
8551 11782 7.475299 TCCTTTGTTTCATAGGGTAGGAAAAT 58.525 34.615 6.45 0.00 39.73 1.82
8552 11783 6.854578 TCCTTTGTTTCATAGGGTAGGAAAA 58.145 36.000 6.45 0.00 39.73 2.29
8553 11784 6.457159 TCCTTTGTTTCATAGGGTAGGAAA 57.543 37.500 6.45 0.00 36.27 3.13
8554 11785 5.045140 CCTCCTTTGTTTCATAGGGTAGGAA 60.045 44.000 6.45 0.00 32.41 3.36
8555 11786 4.473559 CCTCCTTTGTTTCATAGGGTAGGA 59.526 45.833 6.45 0.00 32.41 2.94
8556 11787 4.781934 CCTCCTTTGTTTCATAGGGTAGG 58.218 47.826 6.45 3.98 34.20 3.18
8557 11788 4.200092 GCCTCCTTTGTTTCATAGGGTAG 58.800 47.826 6.45 0.00 34.20 3.18
8558 11789 3.053917 GGCCTCCTTTGTTTCATAGGGTA 60.054 47.826 0.00 0.00 34.20 3.69
8559 11790 2.291605 GGCCTCCTTTGTTTCATAGGGT 60.292 50.000 0.00 0.00 34.20 4.34
8560 11791 2.024941 AGGCCTCCTTTGTTTCATAGGG 60.025 50.000 0.00 0.00 34.20 3.53
8561 11792 3.372440 AGGCCTCCTTTGTTTCATAGG 57.628 47.619 0.00 0.92 34.61 2.57
8562 11793 5.710099 TGTTTAGGCCTCCTTTGTTTCATAG 59.290 40.000 9.68 0.00 34.61 2.23
8563 11794 5.636123 TGTTTAGGCCTCCTTTGTTTCATA 58.364 37.500 9.68 0.00 34.61 2.15
8564 11795 4.479158 TGTTTAGGCCTCCTTTGTTTCAT 58.521 39.130 9.68 0.00 34.61 2.57
8565 11796 3.888930 CTGTTTAGGCCTCCTTTGTTTCA 59.111 43.478 9.68 0.00 34.61 2.69
8566 11797 4.023107 GTCTGTTTAGGCCTCCTTTGTTTC 60.023 45.833 9.68 0.00 34.61 2.78
8567 11798 3.889538 GTCTGTTTAGGCCTCCTTTGTTT 59.110 43.478 9.68 0.00 34.61 2.83
8568 11799 3.117663 TGTCTGTTTAGGCCTCCTTTGTT 60.118 43.478 9.68 0.00 34.61 2.83
8569 11800 2.441750 TGTCTGTTTAGGCCTCCTTTGT 59.558 45.455 9.68 0.00 34.61 2.83
8570 11801 3.140325 TGTCTGTTTAGGCCTCCTTTG 57.860 47.619 9.68 0.00 34.61 2.77
8571 11802 3.876309 TTGTCTGTTTAGGCCTCCTTT 57.124 42.857 9.68 0.00 34.61 3.11
8572 11803 3.562176 CCATTGTCTGTTTAGGCCTCCTT 60.562 47.826 9.68 0.00 34.61 3.36
8573 11804 2.025887 CCATTGTCTGTTTAGGCCTCCT 60.026 50.000 9.68 0.00 37.71 3.69
8574 11805 2.369394 CCATTGTCTGTTTAGGCCTCC 58.631 52.381 9.68 0.00 0.00 4.30
8575 11806 1.745653 GCCATTGTCTGTTTAGGCCTC 59.254 52.381 9.68 0.00 36.17 4.70
8576 11807 1.839424 GCCATTGTCTGTTTAGGCCT 58.161 50.000 11.78 11.78 36.17 5.19
8578 11809 1.544724 TGGCCATTGTCTGTTTAGGC 58.455 50.000 0.00 0.00 41.29 3.93
8579 11810 3.611530 CGTTTGGCCATTGTCTGTTTAGG 60.612 47.826 6.09 0.00 0.00 2.69
8809 12040 0.611618 ATGGAAATGAAGCCGTGGCA 60.612 50.000 14.29 0.00 44.88 4.92
8892 12123 6.292703 GCATGCTTGATAAAAGGAAATGATGC 60.293 38.462 11.37 0.00 0.00 3.91
8968 12199 5.188434 TGGTCCATCTATTTTGCTCTTCAG 58.812 41.667 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.