Multiple sequence alignment - TraesCS4B01G110800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G110800 chr4B 100.000 3657 0 0 1 3657 124495699 124499355 0.000000e+00 6754
1 TraesCS4B01G110800 chr4B 79.160 619 108 16 4 609 591915191 591914581 3.400000e-110 409
2 TraesCS4B01G110800 chr4D 95.439 2894 112 11 772 3656 87945177 87948059 0.000000e+00 4595
3 TraesCS4B01G110800 chr4A 91.708 3039 176 34 321 3303 500628985 500632003 0.000000e+00 4146
4 TraesCS4B01G110800 chr4A 89.757 371 22 5 3302 3656 500632072 500632442 9.250000e-126 460
5 TraesCS4B01G110800 chr6D 81.097 693 107 15 8 690 386650538 386649860 1.930000e-147 532
6 TraesCS4B01G110800 chr7D 81.908 608 92 12 6 598 232488670 232489274 7.050000e-137 497
7 TraesCS4B01G110800 chr1D 81.833 611 89 16 4 598 221022760 221022156 9.120000e-136 494
8 TraesCS4B01G110800 chr1D 82.286 525 90 3 52 574 479489822 479490345 5.570000e-123 451
9 TraesCS4B01G110800 chr1D 80.231 607 99 13 4 598 414270679 414270082 1.560000e-118 436
10 TraesCS4B01G110800 chr2D 81.229 602 92 10 4 604 73464428 73463847 1.990000e-127 466
11 TraesCS4B01G110800 chr3D 79.608 613 110 6 4 604 120634113 120633504 3.380000e-115 425
12 TraesCS4B01G110800 chr3B 79.667 600 102 12 14 597 406910404 406909809 7.310000e-112 414
13 TraesCS4B01G110800 chr3B 82.278 158 26 1 8 165 34032901 34032746 6.370000e-28 135
14 TraesCS4B01G110800 chr3B 81.595 163 30 0 4 166 471604743 471604905 6.370000e-28 135
15 TraesCS4B01G110800 chr7A 78.155 618 114 15 1 604 121555621 121556231 1.240000e-99 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G110800 chr4B 124495699 124499355 3656 False 6754 6754 100.0000 1 3657 1 chr4B.!!$F1 3656
1 TraesCS4B01G110800 chr4B 591914581 591915191 610 True 409 409 79.1600 4 609 1 chr4B.!!$R1 605
2 TraesCS4B01G110800 chr4D 87945177 87948059 2882 False 4595 4595 95.4390 772 3656 1 chr4D.!!$F1 2884
3 TraesCS4B01G110800 chr4A 500628985 500632442 3457 False 2303 4146 90.7325 321 3656 2 chr4A.!!$F1 3335
4 TraesCS4B01G110800 chr6D 386649860 386650538 678 True 532 532 81.0970 8 690 1 chr6D.!!$R1 682
5 TraesCS4B01G110800 chr7D 232488670 232489274 604 False 497 497 81.9080 6 598 1 chr7D.!!$F1 592
6 TraesCS4B01G110800 chr1D 221022156 221022760 604 True 494 494 81.8330 4 598 1 chr1D.!!$R1 594
7 TraesCS4B01G110800 chr1D 479489822 479490345 523 False 451 451 82.2860 52 574 1 chr1D.!!$F1 522
8 TraesCS4B01G110800 chr1D 414270082 414270679 597 True 436 436 80.2310 4 598 1 chr1D.!!$R2 594
9 TraesCS4B01G110800 chr2D 73463847 73464428 581 True 466 466 81.2290 4 604 1 chr2D.!!$R1 600
10 TraesCS4B01G110800 chr3D 120633504 120634113 609 True 425 425 79.6080 4 604 1 chr3D.!!$R1 600
11 TraesCS4B01G110800 chr3B 406909809 406910404 595 True 414 414 79.6670 14 597 1 chr3B.!!$R2 583
12 TraesCS4B01G110800 chr7A 121555621 121556231 610 False 374 374 78.1550 1 604 1 chr7A.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 788 0.249238 CTGGCTATCGTGCTCTCCAC 60.249 60.0 0.0 0.0 41.15 4.02 F
1984 2084 0.262876 GAATGGGAATGGGAAGGCCT 59.737 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2256 2356 0.310543 CAGCCTTGCGTGCACTTTTA 59.689 50.000 16.19 0.0 0.00 1.52 R
3069 3174 2.458620 TGGCATCAATCCAAGAATGCA 58.541 42.857 8.28 0.0 36.82 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.787567 GGAGGTGGAGTAGCGAGCC 61.788 68.421 0.00 0.00 0.00 4.70
45 46 2.441410 CCTCCTCGCTCATATCTAGCA 58.559 52.381 7.24 0.00 40.08 3.49
74 75 1.073897 GCCACCCAGTCAGCTTCTT 59.926 57.895 0.00 0.00 0.00 2.52
165 202 1.315257 CGGAGGGGTGCAATTCTTGG 61.315 60.000 0.00 0.00 0.00 3.61
169 206 1.595093 GGGGTGCAATTCTTGGTCGG 61.595 60.000 0.00 0.00 0.00 4.79
170 207 0.893727 GGGTGCAATTCTTGGTCGGT 60.894 55.000 0.00 0.00 0.00 4.69
176 213 2.034053 GCAATTCTTGGTCGGTGTTTGA 59.966 45.455 0.00 0.00 0.00 2.69
244 283 3.123804 GTGTAATGTCGATCCGCTCATT 58.876 45.455 0.00 0.00 36.18 2.57
260 299 0.951525 CATTAACGGACGTGTGGCCA 60.952 55.000 0.00 0.00 0.00 5.36
291 331 3.733960 GGCTTCCACGCGGGTTTC 61.734 66.667 12.47 0.00 38.11 2.78
404 445 3.063084 GAGAGGTCGTGTCCGCCT 61.063 66.667 0.00 0.00 41.29 5.52
446 487 3.109547 CGCGCTCTACAACGGCAA 61.110 61.111 5.56 0.00 0.00 4.52
461 502 2.706636 GCAAGAATGCGGGCATCTA 58.293 52.632 6.61 0.00 43.83 1.98
535 579 1.302511 GGTCAGAAGCGGGCTTGAA 60.303 57.895 11.17 0.00 36.26 2.69
536 580 1.301677 GGTCAGAAGCGGGCTTGAAG 61.302 60.000 11.17 0.66 36.26 3.02
557 601 1.683441 GGTCCGGACTCCCACAAAT 59.317 57.895 32.52 0.00 0.00 2.32
610 672 1.489070 CGCGTCCAAACCGTGTTGTA 61.489 55.000 0.00 0.00 0.00 2.41
634 696 1.327764 GATGGCTTCCGTGATTCGAAC 59.672 52.381 0.00 0.00 42.86 3.95
636 698 1.338674 TGGCTTCCGTGATTCGAACAT 60.339 47.619 0.00 0.00 42.86 2.71
650 712 1.467543 CGAACATCACGATCCAGACGT 60.468 52.381 0.00 0.00 44.83 4.34
651 713 2.223180 CGAACATCACGATCCAGACGTA 60.223 50.000 0.00 0.00 42.07 3.57
654 716 2.688446 ACATCACGATCCAGACGTATGT 59.312 45.455 9.66 0.00 42.07 2.29
666 728 4.081862 CCAGACGTATGTAGGAGGTTTGAA 60.082 45.833 9.66 0.00 0.00 2.69
675 737 2.032071 AGGTTTGAAGGTCGGCGG 59.968 61.111 7.21 0.00 0.00 6.13
684 746 1.392710 AAGGTCGGCGGTGGAGATAG 61.393 60.000 7.21 0.00 0.00 2.08
688 750 2.797278 CGGCGGTGGAGATAGCCTT 61.797 63.158 0.00 0.00 46.85 4.35
689 751 1.461091 CGGCGGTGGAGATAGCCTTA 61.461 60.000 0.00 0.00 46.85 2.69
690 752 0.977395 GGCGGTGGAGATAGCCTTAT 59.023 55.000 0.00 0.00 45.67 1.73
691 753 1.338200 GGCGGTGGAGATAGCCTTATG 60.338 57.143 0.00 0.00 45.67 1.90
701 763 7.225734 GTGGAGATAGCCTTATGAGAAAAGAAC 59.774 40.741 0.00 0.00 0.00 3.01
703 765 7.440856 GGAGATAGCCTTATGAGAAAAGAACTG 59.559 40.741 0.00 0.00 0.00 3.16
709 771 2.276732 TGAGAAAAGAACTGGCCCTG 57.723 50.000 0.00 0.00 0.00 4.45
726 788 0.249238 CTGGCTATCGTGCTCTCCAC 60.249 60.000 0.00 0.00 41.15 4.02
734 796 3.695606 TGCTCTCCACCTCGGCAC 61.696 66.667 0.00 0.00 33.14 5.01
769 834 0.381445 GCATGGCACGTGCATATTCA 59.619 50.000 38.60 27.40 44.36 2.57
770 835 1.861202 GCATGGCACGTGCATATTCAC 60.861 52.381 38.60 21.40 44.36 3.18
850 950 3.801068 TTGGGAAGTTGGCGGTGGG 62.801 63.158 0.00 0.00 0.00 4.61
885 985 2.515996 TAGAACGCCGGCTCCCTTTG 62.516 60.000 26.68 9.51 0.00 2.77
892 992 2.751837 GGCTCCCTTTGCCTTCCG 60.752 66.667 0.00 0.00 46.38 4.30
894 994 2.041115 GCTCCCTTTGCCTTCCGTC 61.041 63.158 0.00 0.00 0.00 4.79
919 1019 1.065199 TGTCTGCCCATTGACCATCTC 60.065 52.381 0.00 0.00 32.67 2.75
923 1023 1.288633 TGCCCATTGACCATCTCCATT 59.711 47.619 0.00 0.00 0.00 3.16
945 1045 1.280066 CACAACTGCCAACAACTTGC 58.720 50.000 0.00 0.00 0.00 4.01
958 1058 4.632538 ACAACTTGCTCCAACTTACAAC 57.367 40.909 0.00 0.00 0.00 3.32
1021 1121 0.890996 GAGCTGAAACACAGGGTGGG 60.891 60.000 0.00 0.00 45.82 4.61
1257 1357 2.123077 CTCGCCTCCATCCTCCCT 60.123 66.667 0.00 0.00 0.00 4.20
1273 1373 4.075793 CTCCCGAGGTCTCCCCCA 62.076 72.222 0.00 0.00 0.00 4.96
1278 1378 3.003763 GAGGTCTCCCCCAGCGTT 61.004 66.667 0.00 0.00 0.00 4.84
1410 1510 1.878656 GCCACTGGCTCTACGACACT 61.879 60.000 13.28 0.00 46.69 3.55
1479 1579 1.225376 CGCTCCTCTCGTCGCTCTAT 61.225 60.000 0.00 0.00 0.00 1.98
1930 2030 1.657162 AGGTGGAGGAAGGGGATTCTA 59.343 52.381 0.00 0.00 38.07 2.10
1954 2054 1.431488 CTCCATGTCGCCATTGTCCG 61.431 60.000 0.00 0.00 0.00 4.79
1984 2084 0.262876 GAATGGGAATGGGAAGGCCT 59.737 55.000 0.00 0.00 0.00 5.19
2033 2133 2.848679 TGGAGACAGCAGTGGCCA 60.849 61.111 0.00 0.00 42.56 5.36
2058 2158 1.196012 GTGGTAAGGAGGAGGAGGTG 58.804 60.000 0.00 0.00 0.00 4.00
2471 2571 3.738982 TGTCACTGAAATGTCGACCAAT 58.261 40.909 14.12 0.00 0.00 3.16
2615 2716 9.734984 AACTTGCCTTATGTAGTTATGTTACTT 57.265 29.630 0.00 0.00 0.00 2.24
2688 2789 3.008485 GGTGAGGAGATTCAGTTGGAGTT 59.992 47.826 0.00 0.00 0.00 3.01
2758 2859 7.890515 TGTTTGTCCATGTATTTCTTGCAATA 58.109 30.769 0.00 0.00 0.00 1.90
2881 2985 2.489938 ATGTACAACGATGCAAGGGT 57.510 45.000 0.00 0.00 0.00 4.34
2923 3027 4.895668 AGGGTTACAGGTTGATTCGTAA 57.104 40.909 0.00 0.00 0.00 3.18
2949 3053 8.895737 ACTACTCAGTTTCTGATAGTTAGTAGC 58.104 37.037 17.14 0.00 39.92 3.58
2952 3056 8.194104 ACTCAGTTTCTGATAGTTAGTAGCATG 58.806 37.037 0.00 0.00 39.92 4.06
3018 3123 0.625316 TCCAGGGACATGTTGGATGG 59.375 55.000 12.78 12.29 36.13 3.51
3058 3163 8.316640 TGATTCTTCTTTCTGCTTTCTTCTAC 57.683 34.615 0.00 0.00 0.00 2.59
3068 3173 5.828328 TCTGCTTTCTTCTACGGAGATATCA 59.172 40.000 0.00 0.00 0.00 2.15
3069 3174 6.491745 TCTGCTTTCTTCTACGGAGATATCAT 59.508 38.462 0.00 0.00 0.00 2.45
3431 3606 7.154435 TGATCGTTTAGCACTTAGTCTACTT 57.846 36.000 0.00 0.00 0.00 2.24
3442 3630 7.558081 AGCACTTAGTCTACTTGATCATCAGTA 59.442 37.037 0.00 1.40 0.00 2.74
3556 3747 9.941664 CCATATAGTTCACAAATCAATCTTCAC 57.058 33.333 0.00 0.00 0.00 3.18
3567 3758 6.741992 AATCAATCTTCACGACTGCATTTA 57.258 33.333 0.00 0.00 0.00 1.40
3577 3768 5.291858 TCACGACTGCATTTACTGATTGATC 59.708 40.000 0.00 0.00 0.00 2.92
3585 3776 6.261603 TGCATTTACTGATTGATCATGGAGTC 59.738 38.462 0.00 0.00 36.02 3.36
3588 3779 6.550938 TTACTGATTGATCATGGAGTCTGT 57.449 37.500 0.00 3.81 36.02 3.41
3594 3785 6.156775 TGATTGATCATGGAGTCTGTTCCTTA 59.843 38.462 0.00 0.00 38.12 2.69
3614 3805 8.958119 TCCTTACTGGCTTTTAATATAGTGTG 57.042 34.615 0.00 0.00 35.26 3.82
3632 3823 2.288186 TGTGAATTTTCGTTGCGCTGTA 59.712 40.909 9.73 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.439701 TACTCCACCTCCCTCGCG 60.440 66.667 0.00 0.00 0.00 5.87
26 27 2.423185 CCTGCTAGATATGAGCGAGGAG 59.577 54.545 13.78 0.00 43.19 3.69
67 68 0.398318 AGTTCTCCGGCAAAGAAGCT 59.602 50.000 4.39 3.36 33.57 3.74
74 75 0.320771 GAAGAGCAGTTCTCCGGCAA 60.321 55.000 0.00 0.00 42.90 4.52
169 206 7.368059 CCCTCTATTTAAACAAGGTCAAACAC 58.632 38.462 10.06 0.00 0.00 3.32
170 207 6.015772 GCCCTCTATTTAAACAAGGTCAAACA 60.016 38.462 10.06 0.00 0.00 2.83
176 213 5.820947 CGTATGCCCTCTATTTAAACAAGGT 59.179 40.000 10.06 0.00 0.00 3.50
225 264 4.143597 CGTTAATGAGCGGATCGACATTAC 60.144 45.833 14.37 10.96 37.37 1.89
244 283 2.149803 CTCTGGCCACACGTCCGTTA 62.150 60.000 0.00 0.00 0.00 3.18
260 299 4.621747 CGTGGAAGCCAAGAAATCTACTCT 60.622 45.833 0.00 0.00 35.05 3.24
291 331 1.261989 CGCATTCAAACGCCTTCATG 58.738 50.000 0.00 0.00 0.00 3.07
369 410 2.110967 CACTGCCTCCGCCATTGAG 61.111 63.158 0.00 0.00 0.00 3.02
404 445 1.243342 CCACATTGAAGGCGGCTCAA 61.243 55.000 13.70 17.97 37.22 3.02
446 487 1.301244 CGCTAGATGCCCGCATTCT 60.301 57.895 3.24 5.45 36.70 2.40
458 499 2.361992 TTCCCGTCTGGCGCTAGA 60.362 61.111 20.57 20.57 39.71 2.43
461 502 3.764466 CTCTTCCCGTCTGGCGCT 61.764 66.667 7.64 0.00 39.71 5.92
535 579 3.975591 TGGGAGTCCGGACCGACT 61.976 66.667 30.82 16.47 45.86 4.18
536 580 3.756727 GTGGGAGTCCGGACCGAC 61.757 72.222 30.82 19.63 35.24 4.79
557 601 1.682849 CGGAGACAAACATGGGGGA 59.317 57.895 0.00 0.00 0.00 4.81
627 689 3.448686 GTCTGGATCGTGATGTTCGAAT 58.551 45.455 0.00 0.00 40.61 3.34
629 691 1.202143 CGTCTGGATCGTGATGTTCGA 60.202 52.381 0.00 0.00 41.45 3.71
630 692 1.191944 CGTCTGGATCGTGATGTTCG 58.808 55.000 0.00 0.00 0.00 3.95
634 696 3.355626 ACATACGTCTGGATCGTGATG 57.644 47.619 5.87 0.00 41.62 3.07
636 698 2.876550 CCTACATACGTCTGGATCGTGA 59.123 50.000 5.87 0.00 41.62 4.35
650 712 3.449737 CCGACCTTCAAACCTCCTACATA 59.550 47.826 0.00 0.00 0.00 2.29
651 713 2.236395 CCGACCTTCAAACCTCCTACAT 59.764 50.000 0.00 0.00 0.00 2.29
654 716 0.611714 GCCGACCTTCAAACCTCCTA 59.388 55.000 0.00 0.00 0.00 2.94
666 728 1.828660 CTATCTCCACCGCCGACCT 60.829 63.158 0.00 0.00 0.00 3.85
675 737 6.821388 TCTTTTCTCATAAGGCTATCTCCAC 58.179 40.000 0.00 0.00 0.00 4.02
684 746 3.129462 GGCCAGTTCTTTTCTCATAAGGC 59.871 47.826 0.00 0.00 37.69 4.35
688 750 3.308402 CCAGGGCCAGTTCTTTTCTCATA 60.308 47.826 6.18 0.00 0.00 2.15
689 751 2.556114 CCAGGGCCAGTTCTTTTCTCAT 60.556 50.000 6.18 0.00 0.00 2.90
690 752 1.202927 CCAGGGCCAGTTCTTTTCTCA 60.203 52.381 6.18 0.00 0.00 3.27
691 753 1.539157 CCAGGGCCAGTTCTTTTCTC 58.461 55.000 6.18 0.00 0.00 2.87
701 763 2.109799 CACGATAGCCAGGGCCAG 59.890 66.667 6.18 0.00 43.17 4.85
703 765 3.816367 GAGCACGATAGCCAGGGCC 62.816 68.421 6.70 0.00 43.17 5.80
709 771 1.068250 GGTGGAGAGCACGATAGCC 59.932 63.158 0.00 0.00 42.67 3.93
726 788 3.441496 AAAAATATGCATGTGCCGAGG 57.559 42.857 10.16 0.00 41.18 4.63
748 813 1.872952 GAATATGCACGTGCCATGCTA 59.127 47.619 35.72 18.09 43.77 3.49
758 823 5.545658 AAAAGTACTGGTGAATATGCACG 57.454 39.130 7.78 0.00 39.66 5.34
825 923 1.613437 CGCCAACTTCCCAATTTCAGT 59.387 47.619 0.00 0.00 0.00 3.41
885 985 2.507324 GACAGCTCGACGGAAGGC 60.507 66.667 0.00 0.00 0.00 4.35
945 1045 3.054361 AGGGGCTATGTTGTAAGTTGGAG 60.054 47.826 0.00 0.00 0.00 3.86
958 1058 0.463833 GTGTTTCGGGAGGGGCTATG 60.464 60.000 0.00 0.00 0.00 2.23
1021 1121 2.352032 CGTCCTCTCTCCCACCCAC 61.352 68.421 0.00 0.00 0.00 4.61
1194 1294 1.686110 GACGGACTCCCACCAGGAT 60.686 63.158 0.00 0.00 46.33 3.24
1450 1550 2.042843 GAGGAGCGGGAGGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
1581 1681 1.074775 GGGGACATGGACAAGCACA 59.925 57.895 0.00 0.00 0.00 4.57
1954 2054 0.464373 TTCCCATTCTCAGCATCGGC 60.464 55.000 0.00 0.00 41.61 5.54
1984 2084 3.843422 TCTTTGCCAATTCTTCCTCCAA 58.157 40.909 0.00 0.00 0.00 3.53
2033 2133 3.777522 CTCCTCCTCCTTACCACAATTCT 59.222 47.826 0.00 0.00 0.00 2.40
2091 2191 1.298993 CCTCATCACTGGCTGCAGT 59.701 57.895 16.64 0.17 35.49 4.40
2133 2233 0.323725 CCTCCATTGGGTTCAGTGGG 60.324 60.000 2.09 0.60 46.84 4.61
2256 2356 0.310543 CAGCCTTGCGTGCACTTTTA 59.689 50.000 16.19 0.00 0.00 1.52
2294 2394 3.067833 GCTACCATTATTCCGGAAGCTC 58.932 50.000 23.47 0.47 0.00 4.09
2731 2832 5.163513 GCAAGAAATACATGGACAAACAGG 58.836 41.667 0.00 0.00 0.00 4.00
2758 2859 4.063689 CAGAACATCTTCAAGTGCAGAGT 58.936 43.478 0.00 0.00 0.00 3.24
2859 2963 3.055385 ACCCTTGCATCGTTGTACATAGT 60.055 43.478 0.00 0.00 0.00 2.12
2861 2965 3.266636 CACCCTTGCATCGTTGTACATA 58.733 45.455 0.00 0.00 0.00 2.29
2881 2985 8.028652 ACCCTTCTTTTGATCATTTTTAACCA 57.971 30.769 0.00 0.00 0.00 3.67
2923 3027 8.895737 GCTACTAACTATCAGAAACTGAGTAGT 58.104 37.037 16.84 15.86 44.08 2.73
2949 3053 4.025015 GCAAGTAGCAACTCAATCCATG 57.975 45.455 0.00 0.00 44.79 3.66
2952 3056 5.751028 CTACTAGCAAGTAGCAACTCAATCC 59.249 44.000 0.00 0.00 46.53 3.01
3018 3123 7.446001 AGAAGAATCAGAACCAATTTCAGAC 57.554 36.000 0.00 0.00 36.57 3.51
3058 3163 4.572909 TCCAAGAATGCATGATATCTCCG 58.427 43.478 0.00 0.00 0.00 4.63
3068 3173 3.035363 TGGCATCAATCCAAGAATGCAT 58.965 40.909 8.28 0.00 36.82 3.96
3069 3174 2.458620 TGGCATCAATCCAAGAATGCA 58.541 42.857 8.28 0.00 36.82 3.96
3143 3248 6.054941 AGGTTGGCAAGAAAATTTGGTAAAG 58.945 36.000 0.00 0.00 0.00 1.85
3190 3295 2.653115 GGCAAAGCCCAGACTTGC 59.347 61.111 0.00 0.00 44.06 4.01
3431 3606 5.737860 ACAATCAAGCTGTACTGATGATCA 58.262 37.500 16.36 0.00 30.76 2.92
3442 3630 5.263599 TCCAATCCATAACAATCAAGCTGT 58.736 37.500 0.00 0.00 0.00 4.40
3556 3747 5.723492 TGATCAATCAGTAAATGCAGTCG 57.277 39.130 0.00 0.00 32.11 4.18
3567 3758 5.426504 GAACAGACTCCATGATCAATCAGT 58.573 41.667 0.00 1.14 40.64 3.41
3577 3768 3.866651 CCAGTAAGGAACAGACTCCATG 58.133 50.000 0.00 0.00 41.22 3.66
3585 3776 9.614792 ACTATATTAAAAGCCAGTAAGGAACAG 57.385 33.333 0.00 0.00 41.22 3.16
3588 3779 9.391006 CACACTATATTAAAAGCCAGTAAGGAA 57.609 33.333 0.00 0.00 41.22 3.36
3614 3805 2.911120 TGTACAGCGCAACGAAAATTC 58.089 42.857 11.47 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.