Multiple sequence alignment - TraesCS4B01G110500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G110500 chr4B 100.000 4132 0 0 1 4132 124016809 124020940 0.000000e+00 7631.0
1 TraesCS4B01G110500 chr4B 97.059 34 1 0 3497 3530 78607582 78607549 1.600000e-04 58.4
2 TraesCS4B01G110500 chr4B 97.059 34 1 0 3497 3530 78607884 78607851 1.600000e-04 58.4
3 TraesCS4B01G110500 chr4B 100.000 31 0 0 3500 3530 173038525 173038495 1.600000e-04 58.4
4 TraesCS4B01G110500 chr4D 93.240 1287 41 15 734 2007 87713953 87715206 0.000000e+00 1853.0
5 TraesCS4B01G110500 chr4D 91.375 1229 69 19 2107 3329 87715207 87716404 0.000000e+00 1648.0
6 TraesCS4B01G110500 chr4D 90.359 612 34 12 3532 4126 87716621 87717224 0.000000e+00 780.0
7 TraesCS4B01G110500 chr4D 85.047 107 11 3 2004 2110 91240121 91240222 2.030000e-18 104.0
8 TraesCS4B01G110500 chr4A 91.705 1314 65 23 709 2005 500349383 500350669 0.000000e+00 1783.0
9 TraesCS4B01G110500 chr4A 91.000 1200 69 17 2108 3281 500350667 500351853 0.000000e+00 1581.0
10 TraesCS4B01G110500 chr4A 90.785 803 41 11 3341 4132 500351855 500352635 0.000000e+00 1042.0
11 TraesCS4B01G110500 chr4A 93.258 178 10 2 536 712 12399601 12399777 1.140000e-65 261.0
12 TraesCS4B01G110500 chr4A 87.558 217 24 3 198 412 500348694 500348909 8.870000e-62 248.0
13 TraesCS4B01G110500 chr4A 90.909 110 9 1 536 645 723512982 723512874 3.330000e-31 147.0
14 TraesCS4B01G110500 chr4A 90.476 42 4 0 3449 3490 621792774 621792733 5.770000e-04 56.5
15 TraesCS4B01G110500 chr5B 92.905 296 21 0 1370 1665 207577667 207577962 8.210000e-117 431.0
16 TraesCS4B01G110500 chr5B 83.658 257 27 5 1371 1627 11061134 11061375 1.160000e-55 228.0
17 TraesCS4B01G110500 chr5B 90.654 107 6 3 1034 1139 207577345 207577448 5.570000e-29 139.0
18 TraesCS4B01G110500 chr5B 84.483 116 12 6 2004 2113 319352878 319352763 4.370000e-20 110.0
19 TraesCS4B01G110500 chr5B 100.000 34 0 0 3497 3530 299602340 299602307 3.450000e-06 63.9
20 TraesCS4B01G110500 chr5A 92.230 296 23 0 1370 1665 244450135 244449840 1.780000e-113 420.0
21 TraesCS4B01G110500 chr5A 82.051 195 17 8 536 713 428660167 428660360 2.570000e-32 150.0
22 TraesCS4B01G110500 chr5A 90.654 107 6 3 1034 1139 244450457 244450354 5.570000e-29 139.0
23 TraesCS4B01G110500 chr5A 80.693 202 17 5 536 718 377937162 377937360 2.000000e-28 137.0
24 TraesCS4B01G110500 chr5A 84.545 110 14 2 2004 2110 362189630 362189739 5.650000e-19 106.0
25 TraesCS4B01G110500 chr5A 80.128 156 12 10 578 715 559075235 559075389 9.450000e-17 99.0
26 TraesCS4B01G110500 chr1D 92.177 294 23 0 1371 1664 7921310 7921017 2.300000e-112 416.0
27 TraesCS4B01G110500 chr1D 97.143 35 0 1 3497 3531 444347478 444347511 1.600000e-04 58.4
28 TraesCS4B01G110500 chr1D 96.970 33 1 0 3498 3530 97132506 97132538 5.770000e-04 56.5
29 TraesCS4B01G110500 chr1B 92.177 294 23 0 1371 1664 10113708 10113415 2.300000e-112 416.0
30 TraesCS4B01G110500 chr1B 94.737 57 3 0 1057 1113 10114115 10114059 5.690000e-14 89.8
31 TraesCS4B01G110500 chr1B 96.875 32 1 0 3498 3529 130540284 130540253 2.000000e-03 54.7
32 TraesCS4B01G110500 chr5D 91.892 296 24 0 1370 1665 204871866 204871571 8.260000e-112 414.0
33 TraesCS4B01G110500 chr5D 86.979 192 16 4 533 717 565093898 565094087 1.510000e-49 207.0
34 TraesCS4B01G110500 chr5D 86.735 196 7 2 536 713 558926542 558926348 2.520000e-47 200.0
35 TraesCS4B01G110500 chr5D 92.632 95 5 2 1034 1128 204872185 204872093 7.210000e-28 135.0
36 TraesCS4B01G110500 chr5D 85.047 107 12 1 2004 2110 59942842 59942944 5.650000e-19 106.0
37 TraesCS4B01G110500 chr5D 100.000 33 0 0 3498 3530 265961943 265961911 1.240000e-05 62.1
38 TraesCS4B01G110500 chr5D 96.970 33 1 0 3497 3529 252615797 252615829 5.770000e-04 56.5
39 TraesCS4B01G110500 chr5D 100.000 30 0 0 3449 3478 547049969 547049998 5.770000e-04 56.5
40 TraesCS4B01G110500 chr5D 96.970 33 0 1 494 526 330717373 330717404 2.000000e-03 54.7
41 TraesCS4B01G110500 chr1A 91.809 293 24 0 1372 1664 9589136 9588844 3.840000e-110 409.0
42 TraesCS4B01G110500 chr1A 83.756 197 15 4 536 715 575470614 575470418 1.980000e-38 171.0
43 TraesCS4B01G110500 chr1A 85.185 108 11 3 1057 1161 9589279 9589174 5.650000e-19 106.0
44 TraesCS4B01G110500 chr1A 97.222 36 0 1 3496 3530 472082202 472082237 4.460000e-05 60.2
45 TraesCS4B01G110500 chr1A 94.444 36 2 0 3495 3530 414628997 414628962 5.770000e-04 56.5
46 TraesCS4B01G110500 chr1A 96.970 33 0 1 494 526 552265383 552265352 2.000000e-03 54.7
47 TraesCS4B01G110500 chr6B 89.655 174 12 6 536 708 696097709 696097541 2.500000e-52 217.0
48 TraesCS4B01G110500 chr6B 86.598 194 8 2 536 712 563531746 563531938 9.060000e-47 198.0
49 TraesCS4B01G110500 chr6B 88.000 100 7 4 619 715 674952910 674952813 3.380000e-21 113.0
50 TraesCS4B01G110500 chr6A 89.535 172 16 1 547 718 520317961 520317792 2.500000e-52 217.0
51 TraesCS4B01G110500 chr6A 80.100 201 17 6 541 721 117713736 117713933 1.210000e-25 128.0
52 TraesCS4B01G110500 chr6A 97.059 34 0 1 493 526 582803447 582803479 5.770000e-04 56.5
53 TraesCS4B01G110500 chr3B 87.435 191 7 2 536 710 823549331 823549520 1.950000e-48 204.0
54 TraesCS4B01G110500 chr3B 88.696 115 8 2 2003 2116 248580832 248580722 7.210000e-28 135.0
55 TraesCS4B01G110500 chr3B 100.000 29 0 0 416 444 807354222 807354194 2.000000e-03 54.7
56 TraesCS4B01G110500 chr3B 100.000 28 0 0 408 435 394962779 394962806 7.000000e-03 52.8
57 TraesCS4B01G110500 chr2A 87.113 194 7 12 536 712 485091649 485091457 1.950000e-48 204.0
58 TraesCS4B01G110500 chr2A 94.595 37 1 1 490 526 665927 665892 5.770000e-04 56.5
59 TraesCS4B01G110500 chr7B 86.294 197 9 8 533 712 113163671 113163866 9.060000e-47 198.0
60 TraesCS4B01G110500 chr7B 85.052 194 11 10 536 712 676265880 676265688 9.120000e-42 182.0
61 TraesCS4B01G110500 chr7B 87.037 108 13 1 2004 2110 569938192 569938085 2.020000e-23 121.0
62 TraesCS4B01G110500 chr7B 100.000 29 0 0 494 522 676265950 676265922 2.000000e-03 54.7
63 TraesCS4B01G110500 chr3D 83.708 178 23 6 539 712 484734327 484734152 3.310000e-36 163.0
64 TraesCS4B01G110500 chr3A 83.648 159 22 3 561 716 420834531 420834374 3.330000e-31 147.0
65 TraesCS4B01G110500 chr7A 87.963 108 8 5 2003 2110 516148406 516148304 5.610000e-24 122.0
66 TraesCS4B01G110500 chr7A 80.447 179 18 7 551 712 10420280 10420458 2.020000e-23 121.0
67 TraesCS4B01G110500 chr7A 85.345 116 10 5 2003 2118 61865523 61865631 3.380000e-21 113.0
68 TraesCS4B01G110500 chr7A 96.970 33 0 1 494 526 717281564 717281533 2.000000e-03 54.7
69 TraesCS4B01G110500 chr2B 85.849 106 11 4 2006 2110 275316226 275316328 4.370000e-20 110.0
70 TraesCS4B01G110500 chr2B 100.000 34 0 0 3497 3530 399941867 399941900 3.450000e-06 63.9
71 TraesCS4B01G110500 chr2B 83.582 67 7 3 386 449 87166974 87166909 4.460000e-05 60.2
72 TraesCS4B01G110500 chr2D 100.000 34 0 0 3497 3530 331763022 331763055 3.450000e-06 63.9
73 TraesCS4B01G110500 chr6D 97.059 34 1 0 3497 3530 420734847 420734814 1.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G110500 chr4B 124016809 124020940 4131 False 7631.0 7631 100.0000 1 4132 1 chr4B.!!$F1 4131
1 TraesCS4B01G110500 chr4D 87713953 87717224 3271 False 1427.0 1853 91.6580 734 4126 3 chr4D.!!$F2 3392
2 TraesCS4B01G110500 chr4A 500348694 500352635 3941 False 1163.5 1783 90.2620 198 4132 4 chr4A.!!$F2 3934
3 TraesCS4B01G110500 chr5B 207577345 207577962 617 False 285.0 431 91.7795 1034 1665 2 chr5B.!!$F2 631
4 TraesCS4B01G110500 chr5A 244449840 244450457 617 True 279.5 420 91.4420 1034 1665 2 chr5A.!!$R1 631
5 TraesCS4B01G110500 chr1B 10113415 10114115 700 True 252.9 416 93.4570 1057 1664 2 chr1B.!!$R2 607
6 TraesCS4B01G110500 chr5D 204871571 204872185 614 True 274.5 414 92.2620 1034 1665 2 chr5D.!!$R3 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.188587 TCCCGACATCTAGGATGGCT 59.811 55.0 11.00 0.00 0.00 4.75 F
165 166 0.319728 CCCGACATCTAGGATGGCTG 59.680 60.0 11.00 5.07 0.00 4.85 F
166 167 0.320247 CCGACATCTAGGATGGCTGC 60.320 60.0 11.00 0.00 0.00 5.25 F
339 341 0.323451 GGGTCAAAGCCTTTCCGGAT 60.323 55.0 4.15 0.00 31.81 4.18 F
1679 2339 0.444260 GGTAAAGACGCAGCAGCTTC 59.556 55.0 0.00 0.00 39.16 3.86 F
2019 2687 1.002069 TGGTACTCCCTCCGTCCTAA 58.998 55.0 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1035 1431 0.171455 ACCGACGACATCTTGCTCTC 59.829 55.000 0.00 0.00 0.00 3.20 R
1349 2006 0.863144 ACGAAACCGGTCAAATCGTG 59.137 50.000 26.43 8.73 44.20 4.35 R
2000 2668 1.002069 TTAGGACGGAGGGAGTACCA 58.998 55.000 0.00 0.00 43.89 3.25 R
2091 2759 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44 R
2637 3330 1.194218 GTGCAGCCCCCATACAAAAT 58.806 50.000 0.00 0.00 0.00 1.82 R
3784 4583 1.691976 ACAGTGAAACAGTGGATCGGA 59.308 47.619 0.00 0.00 41.43 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.845781 AACAGAGAAGCAGGAACTTGA 57.154 42.857 0.00 0.00 34.60 3.02
22 23 4.363991 AACAGAGAAGCAGGAACTTGAT 57.636 40.909 0.00 0.00 34.60 2.57
23 24 3.672808 ACAGAGAAGCAGGAACTTGATG 58.327 45.455 0.00 0.00 34.60 3.07
24 25 2.419324 CAGAGAAGCAGGAACTTGATGC 59.581 50.000 0.00 0.00 34.60 3.91
30 31 3.648339 GCAGGAACTTGATGCTTTGAA 57.352 42.857 0.00 0.00 34.60 2.69
31 32 4.184079 GCAGGAACTTGATGCTTTGAAT 57.816 40.909 0.00 0.00 34.60 2.57
32 33 5.314923 GCAGGAACTTGATGCTTTGAATA 57.685 39.130 0.00 0.00 34.60 1.75
33 34 5.899299 GCAGGAACTTGATGCTTTGAATAT 58.101 37.500 0.00 0.00 34.60 1.28
34 35 5.975939 GCAGGAACTTGATGCTTTGAATATC 59.024 40.000 0.00 0.00 34.60 1.63
35 36 6.501781 CAGGAACTTGATGCTTTGAATATCC 58.498 40.000 0.00 0.00 34.60 2.59
36 37 5.297776 AGGAACTTGATGCTTTGAATATCCG 59.702 40.000 0.00 0.00 27.25 4.18
37 38 4.558538 ACTTGATGCTTTGAATATCCGC 57.441 40.909 0.00 0.00 0.00 5.54
38 39 3.002656 ACTTGATGCTTTGAATATCCGCG 59.997 43.478 0.00 0.00 0.00 6.46
39 40 2.560504 TGATGCTTTGAATATCCGCGT 58.439 42.857 4.92 0.00 0.00 6.01
40 41 2.543848 TGATGCTTTGAATATCCGCGTC 59.456 45.455 4.92 0.00 37.20 5.19
41 42 2.309528 TGCTTTGAATATCCGCGTCT 57.690 45.000 4.92 0.00 0.00 4.18
42 43 1.933181 TGCTTTGAATATCCGCGTCTG 59.067 47.619 4.92 0.00 0.00 3.51
43 44 2.201732 GCTTTGAATATCCGCGTCTGA 58.798 47.619 4.92 0.00 0.00 3.27
44 45 2.607635 GCTTTGAATATCCGCGTCTGAA 59.392 45.455 4.92 0.00 0.00 3.02
45 46 3.544244 GCTTTGAATATCCGCGTCTGAAC 60.544 47.826 4.92 0.00 0.00 3.18
46 47 2.218953 TGAATATCCGCGTCTGAACC 57.781 50.000 4.92 0.00 0.00 3.62
47 48 1.202486 TGAATATCCGCGTCTGAACCC 60.202 52.381 4.92 0.00 0.00 4.11
48 49 1.068741 GAATATCCGCGTCTGAACCCT 59.931 52.381 4.92 0.00 0.00 4.34
49 50 0.674534 ATATCCGCGTCTGAACCCTC 59.325 55.000 4.92 0.00 0.00 4.30
50 51 1.389609 TATCCGCGTCTGAACCCTCC 61.390 60.000 4.92 0.00 0.00 4.30
51 52 3.691342 CCGCGTCTGAACCCTCCA 61.691 66.667 4.92 0.00 0.00 3.86
52 53 2.432628 CGCGTCTGAACCCTCCAC 60.433 66.667 0.00 0.00 0.00 4.02
53 54 2.047179 GCGTCTGAACCCTCCACC 60.047 66.667 0.00 0.00 0.00 4.61
54 55 2.879233 GCGTCTGAACCCTCCACCA 61.879 63.158 0.00 0.00 0.00 4.17
55 56 1.983224 CGTCTGAACCCTCCACCAT 59.017 57.895 0.00 0.00 0.00 3.55
56 57 1.191535 CGTCTGAACCCTCCACCATA 58.808 55.000 0.00 0.00 0.00 2.74
57 58 1.553248 CGTCTGAACCCTCCACCATAA 59.447 52.381 0.00 0.00 0.00 1.90
58 59 2.418746 CGTCTGAACCCTCCACCATAAG 60.419 54.545 0.00 0.00 0.00 1.73
59 60 2.092914 GTCTGAACCCTCCACCATAAGG 60.093 54.545 0.00 0.00 42.21 2.69
60 61 2.196595 CTGAACCCTCCACCATAAGGA 58.803 52.381 0.00 0.00 38.69 3.36
61 62 2.780010 CTGAACCCTCCACCATAAGGAT 59.220 50.000 0.00 0.00 38.69 3.24
62 63 2.509548 TGAACCCTCCACCATAAGGATG 59.490 50.000 0.00 0.00 38.69 3.51
70 71 3.379650 CCATAAGGATGGCGTCGTT 57.620 52.632 17.64 17.64 46.30 3.85
71 72 1.663695 CCATAAGGATGGCGTCGTTT 58.336 50.000 18.58 9.61 46.30 3.60
72 73 2.014128 CCATAAGGATGGCGTCGTTTT 58.986 47.619 18.58 9.28 46.30 2.43
73 74 2.031683 CCATAAGGATGGCGTCGTTTTC 59.968 50.000 18.58 0.00 46.30 2.29
74 75 2.459060 TAAGGATGGCGTCGTTTTCA 57.541 45.000 18.58 0.00 36.42 2.69
75 76 1.821216 AAGGATGGCGTCGTTTTCAT 58.179 45.000 8.76 0.00 31.16 2.57
76 77 2.684001 AGGATGGCGTCGTTTTCATA 57.316 45.000 0.00 0.00 0.00 2.15
77 78 3.194005 AGGATGGCGTCGTTTTCATAT 57.806 42.857 0.00 0.00 0.00 1.78
78 79 3.541632 AGGATGGCGTCGTTTTCATATT 58.458 40.909 0.00 0.00 0.00 1.28
79 80 3.312421 AGGATGGCGTCGTTTTCATATTG 59.688 43.478 0.00 0.00 0.00 1.90
80 81 3.548014 GGATGGCGTCGTTTTCATATTGG 60.548 47.826 0.00 0.00 0.00 3.16
81 82 2.701107 TGGCGTCGTTTTCATATTGGA 58.299 42.857 0.00 0.00 0.00 3.53
82 83 2.675844 TGGCGTCGTTTTCATATTGGAG 59.324 45.455 0.00 0.00 0.00 3.86
83 84 2.031683 GGCGTCGTTTTCATATTGGAGG 59.968 50.000 0.00 0.00 0.00 4.30
84 85 2.676342 GCGTCGTTTTCATATTGGAGGT 59.324 45.455 0.00 0.00 0.00 3.85
85 86 3.485216 GCGTCGTTTTCATATTGGAGGTG 60.485 47.826 0.00 0.00 0.00 4.00
86 87 3.485216 CGTCGTTTTCATATTGGAGGTGC 60.485 47.826 0.00 0.00 0.00 5.01
87 88 2.675844 TCGTTTTCATATTGGAGGTGCG 59.324 45.455 0.00 0.00 0.00 5.34
88 89 2.418628 CGTTTTCATATTGGAGGTGCGT 59.581 45.455 0.00 0.00 0.00 5.24
89 90 3.619483 CGTTTTCATATTGGAGGTGCGTA 59.381 43.478 0.00 0.00 0.00 4.42
90 91 4.093703 CGTTTTCATATTGGAGGTGCGTAA 59.906 41.667 0.00 0.00 0.00 3.18
91 92 5.220777 CGTTTTCATATTGGAGGTGCGTAAT 60.221 40.000 0.00 0.00 0.00 1.89
92 93 6.560711 GTTTTCATATTGGAGGTGCGTAATT 58.439 36.000 0.00 0.00 0.00 1.40
93 94 6.371809 TTTCATATTGGAGGTGCGTAATTC 57.628 37.500 0.00 0.00 0.00 2.17
94 95 5.029807 TCATATTGGAGGTGCGTAATTCA 57.970 39.130 0.00 0.00 0.00 2.57
95 96 5.432645 TCATATTGGAGGTGCGTAATTCAA 58.567 37.500 0.00 0.00 0.00 2.69
96 97 6.061441 TCATATTGGAGGTGCGTAATTCAAT 58.939 36.000 0.00 0.00 0.00 2.57
97 98 4.900635 ATTGGAGGTGCGTAATTCAATC 57.099 40.909 0.00 0.00 0.00 2.67
98 99 3.627395 TGGAGGTGCGTAATTCAATCT 57.373 42.857 0.00 0.00 0.00 2.40
99 100 3.531538 TGGAGGTGCGTAATTCAATCTC 58.468 45.455 0.00 0.00 0.00 2.75
100 101 2.872858 GGAGGTGCGTAATTCAATCTCC 59.127 50.000 0.00 0.00 32.81 3.71
101 102 2.872858 GAGGTGCGTAATTCAATCTCCC 59.127 50.000 0.00 0.00 0.00 4.30
102 103 1.597663 GGTGCGTAATTCAATCTCCCG 59.402 52.381 0.00 0.00 0.00 5.14
103 104 1.003866 GTGCGTAATTCAATCTCCCGC 60.004 52.381 0.00 0.00 40.02 6.13
104 105 1.295792 GCGTAATTCAATCTCCCGCA 58.704 50.000 0.00 0.00 39.45 5.69
105 106 1.668751 GCGTAATTCAATCTCCCGCAA 59.331 47.619 0.00 0.00 39.45 4.85
106 107 2.290641 GCGTAATTCAATCTCCCGCAAT 59.709 45.455 0.00 0.00 39.45 3.56
107 108 3.496884 GCGTAATTCAATCTCCCGCAATA 59.503 43.478 0.00 0.00 39.45 1.90
108 109 4.024387 GCGTAATTCAATCTCCCGCAATAA 60.024 41.667 0.00 0.00 39.45 1.40
109 110 5.679906 CGTAATTCAATCTCCCGCAATAAG 58.320 41.667 0.00 0.00 0.00 1.73
110 111 5.465390 CGTAATTCAATCTCCCGCAATAAGA 59.535 40.000 0.00 0.00 0.00 2.10
111 112 6.147821 CGTAATTCAATCTCCCGCAATAAGAT 59.852 38.462 0.00 0.00 0.00 2.40
112 113 5.954296 ATTCAATCTCCCGCAATAAGATG 57.046 39.130 0.00 0.00 30.35 2.90
113 114 3.743521 TCAATCTCCCGCAATAAGATGG 58.256 45.455 0.00 0.00 30.35 3.51
114 115 2.816087 CAATCTCCCGCAATAAGATGGG 59.184 50.000 0.00 0.00 43.36 4.00
117 118 3.763671 CCGCAATAAGATGGGGGC 58.236 61.111 2.70 0.00 46.59 5.80
118 119 1.152777 CCGCAATAAGATGGGGGCA 60.153 57.895 2.70 0.00 46.59 5.36
119 120 0.540365 CCGCAATAAGATGGGGGCAT 60.540 55.000 2.70 0.00 46.59 4.40
120 121 1.271871 CCGCAATAAGATGGGGGCATA 60.272 52.381 2.70 0.00 46.59 3.14
121 122 2.621407 CCGCAATAAGATGGGGGCATAT 60.621 50.000 2.70 0.00 46.59 1.78
122 123 3.091545 CGCAATAAGATGGGGGCATATT 58.908 45.455 0.00 0.00 0.00 1.28
123 124 3.129287 CGCAATAAGATGGGGGCATATTC 59.871 47.826 0.00 0.00 0.00 1.75
124 125 3.448660 GCAATAAGATGGGGGCATATTCC 59.551 47.826 0.00 0.00 0.00 3.01
125 126 4.026052 CAATAAGATGGGGGCATATTCCC 58.974 47.826 1.01 1.01 45.80 3.97
138 139 3.820557 CATATTCCCCTAATATGCCCCG 58.179 50.000 5.15 0.00 46.40 5.73
139 140 0.331616 ATTCCCCTAATATGCCCCGC 59.668 55.000 0.00 0.00 0.00 6.13
140 141 1.063070 TTCCCCTAATATGCCCCGCA 61.063 55.000 0.00 0.00 44.86 5.69
152 153 4.776322 CCCGCATGCTTCCCGACA 62.776 66.667 17.13 0.00 0.00 4.35
153 154 2.514592 CCGCATGCTTCCCGACAT 60.515 61.111 17.13 0.00 0.00 3.06
154 155 2.537560 CCGCATGCTTCCCGACATC 61.538 63.158 17.13 0.00 0.00 3.06
155 156 1.522355 CGCATGCTTCCCGACATCT 60.522 57.895 17.13 0.00 0.00 2.90
156 157 0.249447 CGCATGCTTCCCGACATCTA 60.249 55.000 17.13 0.00 0.00 1.98
157 158 1.506493 GCATGCTTCCCGACATCTAG 58.494 55.000 11.37 0.00 0.00 2.43
158 159 1.875576 GCATGCTTCCCGACATCTAGG 60.876 57.143 11.37 0.00 0.00 3.02
159 160 1.688735 CATGCTTCCCGACATCTAGGA 59.311 52.381 0.00 0.00 0.00 2.94
160 161 2.088104 TGCTTCCCGACATCTAGGAT 57.912 50.000 0.00 0.00 0.00 3.24
161 162 1.688735 TGCTTCCCGACATCTAGGATG 59.311 52.381 6.04 6.04 0.00 3.51
162 163 1.001406 GCTTCCCGACATCTAGGATGG 59.999 57.143 11.46 0.00 0.00 3.51
163 164 1.001406 CTTCCCGACATCTAGGATGGC 59.999 57.143 11.46 7.74 0.00 4.40
164 165 0.188587 TCCCGACATCTAGGATGGCT 59.811 55.000 11.00 0.00 0.00 4.75
165 166 0.319728 CCCGACATCTAGGATGGCTG 59.680 60.000 11.00 5.07 0.00 4.85
166 167 0.320247 CCGACATCTAGGATGGCTGC 60.320 60.000 11.00 0.00 0.00 5.25
167 168 0.390492 CGACATCTAGGATGGCTGCA 59.610 55.000 11.00 0.00 0.00 4.41
168 169 1.202568 CGACATCTAGGATGGCTGCAA 60.203 52.381 11.00 0.00 0.00 4.08
169 170 2.492012 GACATCTAGGATGGCTGCAAG 58.508 52.381 11.46 0.00 0.00 4.01
170 171 2.103771 GACATCTAGGATGGCTGCAAGA 59.896 50.000 11.46 0.00 34.07 3.02
171 172 2.104451 ACATCTAGGATGGCTGCAAGAG 59.896 50.000 11.46 0.00 34.07 2.85
185 186 3.754188 GCAAGAGCATCAACTACCAAG 57.246 47.619 0.00 0.00 41.58 3.61
186 187 3.077359 GCAAGAGCATCAACTACCAAGT 58.923 45.455 0.00 0.00 41.58 3.16
187 188 3.503748 GCAAGAGCATCAACTACCAAGTT 59.496 43.478 0.00 0.00 43.04 2.66
201 202 7.687941 ACTACCAAGTTGAATAGAAATGGTG 57.312 36.000 16.62 0.00 39.82 4.17
202 203 7.231467 ACTACCAAGTTGAATAGAAATGGTGT 58.769 34.615 16.62 0.98 39.82 4.16
227 228 2.365095 GATCACCCTAGCGAACCCCG 62.365 65.000 0.00 0.00 42.21 5.73
248 249 2.064581 GGAGGTGGCGACATAGGGT 61.065 63.158 0.00 0.00 46.14 4.34
250 251 2.029307 GAGGTGGCGACATAGGGTCC 62.029 65.000 0.00 0.00 46.14 4.46
252 253 2.043752 TGGCGACATAGGGTCCGA 60.044 61.111 0.00 0.00 43.95 4.55
270 271 4.693566 GTCCGACTTCACCATTAATGTTGA 59.306 41.667 11.29 11.29 0.00 3.18
271 272 4.935205 TCCGACTTCACCATTAATGTTGAG 59.065 41.667 14.40 11.53 30.78 3.02
272 273 4.437390 CCGACTTCACCATTAATGTTGAGC 60.437 45.833 14.40 8.50 30.78 4.26
308 310 6.040955 CACTAGAAACTAGATGCATACCCTCA 59.959 42.308 0.00 0.00 0.00 3.86
339 341 0.323451 GGGTCAAAGCCTTTCCGGAT 60.323 55.000 4.15 0.00 31.81 4.18
341 343 1.613255 GGTCAAAGCCTTTCCGGATGA 60.613 52.381 4.15 0.13 33.16 2.92
345 347 1.216990 AAGCCTTTCCGGATGAGGAT 58.783 50.000 29.24 23.49 40.48 3.24
350 352 2.298729 CCTTTCCGGATGAGGATCTCTC 59.701 54.545 23.57 0.00 40.48 3.20
363 365 7.089106 TGAGGATCTCTCTCTCAAGATGATA 57.911 40.000 11.12 0.00 42.86 2.15
365 367 7.017452 TGAGGATCTCTCTCTCAAGATGATAGA 59.983 40.741 11.12 0.00 42.86 1.98
370 372 6.024563 TCTCTCTCAAGATGATAGAAGGGT 57.975 41.667 0.00 0.00 30.69 4.34
381 383 4.935578 TGATAGAAGGGTTCAGTCTCTCA 58.064 43.478 0.00 0.00 0.00 3.27
382 384 5.333581 TGATAGAAGGGTTCAGTCTCTCAA 58.666 41.667 0.00 0.00 0.00 3.02
383 385 5.780282 TGATAGAAGGGTTCAGTCTCTCAAA 59.220 40.000 0.00 0.00 0.00 2.69
384 386 6.441924 TGATAGAAGGGTTCAGTCTCTCAAAT 59.558 38.462 0.00 0.00 0.00 2.32
385 387 4.904241 AGAAGGGTTCAGTCTCTCAAATG 58.096 43.478 0.00 0.00 0.00 2.32
398 400 6.097981 AGTCTCTCAAATGTGCTCATATGAGA 59.902 38.462 32.38 14.99 44.74 3.27
412 414 1.195115 ATGAGATAGGGCGTGTGTGT 58.805 50.000 0.00 0.00 0.00 3.72
413 415 1.842052 TGAGATAGGGCGTGTGTGTA 58.158 50.000 0.00 0.00 0.00 2.90
414 416 1.475280 TGAGATAGGGCGTGTGTGTAC 59.525 52.381 0.00 0.00 0.00 2.90
419 423 1.592131 GGGCGTGTGTGTACGTTCA 60.592 57.895 0.00 0.00 45.36 3.18
420 424 0.947180 GGGCGTGTGTGTACGTTCAT 60.947 55.000 0.00 0.00 45.36 2.57
421 425 1.669502 GGGCGTGTGTGTACGTTCATA 60.670 52.381 0.00 0.00 45.36 2.15
423 427 2.587956 GCGTGTGTGTACGTTCATAGA 58.412 47.619 0.00 0.00 45.36 1.98
425 429 3.168963 CGTGTGTGTACGTTCATAGAGG 58.831 50.000 0.00 0.00 39.13 3.69
426 430 3.365666 CGTGTGTGTACGTTCATAGAGGT 60.366 47.826 0.00 0.00 39.13 3.85
436 440 4.705507 ACGTTCATAGAGGTGAGTGTATGT 59.294 41.667 0.00 0.00 0.00 2.29
438 442 4.655762 TCATAGAGGTGAGTGTATGTGC 57.344 45.455 0.00 0.00 0.00 4.57
440 444 4.651045 TCATAGAGGTGAGTGTATGTGCAT 59.349 41.667 0.00 0.00 0.00 3.96
443 447 7.669722 TCATAGAGGTGAGTGTATGTGCATATA 59.330 37.037 0.00 0.00 0.00 0.86
444 448 6.924913 AGAGGTGAGTGTATGTGCATATAT 57.075 37.500 6.43 0.00 0.00 0.86
445 449 7.308450 AGAGGTGAGTGTATGTGCATATATT 57.692 36.000 6.43 0.00 0.00 1.28
446 450 7.157347 AGAGGTGAGTGTATGTGCATATATTG 58.843 38.462 6.43 0.00 0.00 1.90
447 451 7.015584 AGAGGTGAGTGTATGTGCATATATTGA 59.984 37.037 6.43 0.00 0.00 2.57
448 452 7.157347 AGGTGAGTGTATGTGCATATATTGAG 58.843 38.462 6.43 0.00 0.00 3.02
449 453 6.931281 GGTGAGTGTATGTGCATATATTGAGT 59.069 38.462 6.43 0.00 0.00 3.41
451 455 7.439356 GTGAGTGTATGTGCATATATTGAGTGT 59.561 37.037 6.43 0.00 0.00 3.55
453 457 6.931281 AGTGTATGTGCATATATTGAGTGTCC 59.069 38.462 6.43 0.00 0.00 4.02
456 460 6.812879 ATGTGCATATATTGAGTGTCCATG 57.187 37.500 0.00 0.00 0.00 3.66
457 461 5.683681 TGTGCATATATTGAGTGTCCATGT 58.316 37.500 0.00 0.00 0.00 3.21
458 462 5.759763 TGTGCATATATTGAGTGTCCATGTC 59.240 40.000 0.00 0.00 0.00 3.06
461 847 5.106791 GCATATATTGAGTGTCCATGTCTGC 60.107 44.000 0.00 0.00 0.00 4.26
465 851 1.270465 TGAGTGTCCATGTCTGCACTG 60.270 52.381 11.58 0.00 41.59 3.66
502 896 9.990868 ATTTAACATAAATCCAAAGTACTCCCT 57.009 29.630 0.00 0.00 0.00 4.20
503 897 9.816787 TTTAACATAAATCCAAAGTACTCCCTT 57.183 29.630 0.00 0.00 0.00 3.95
504 898 7.939784 AACATAAATCCAAAGTACTCCCTTC 57.060 36.000 0.00 0.00 0.00 3.46
505 899 6.113411 ACATAAATCCAAAGTACTCCCTTCG 58.887 40.000 0.00 0.00 0.00 3.79
506 900 4.635699 AAATCCAAAGTACTCCCTTCGT 57.364 40.909 0.00 0.00 0.00 3.85
507 901 4.635699 AATCCAAAGTACTCCCTTCGTT 57.364 40.909 0.00 0.00 0.00 3.85
508 902 4.635699 ATCCAAAGTACTCCCTTCGTTT 57.364 40.909 0.00 0.00 0.00 3.60
509 903 4.426736 TCCAAAGTACTCCCTTCGTTTT 57.573 40.909 0.00 0.00 0.00 2.43
510 904 4.784177 TCCAAAGTACTCCCTTCGTTTTT 58.216 39.130 0.00 0.00 0.00 1.94
511 905 5.927819 TCCAAAGTACTCCCTTCGTTTTTA 58.072 37.500 0.00 0.00 0.00 1.52
512 906 6.536447 TCCAAAGTACTCCCTTCGTTTTTAT 58.464 36.000 0.00 0.00 0.00 1.40
513 907 6.999871 TCCAAAGTACTCCCTTCGTTTTTATT 59.000 34.615 0.00 0.00 0.00 1.40
514 908 7.503230 TCCAAAGTACTCCCTTCGTTTTTATTT 59.497 33.333 0.00 0.00 0.00 1.40
515 909 8.785946 CCAAAGTACTCCCTTCGTTTTTATTTA 58.214 33.333 0.00 0.00 0.00 1.40
516 910 9.603298 CAAAGTACTCCCTTCGTTTTTATTTAC 57.397 33.333 0.00 0.00 0.00 2.01
517 911 9.565090 AAAGTACTCCCTTCGTTTTTATTTACT 57.435 29.630 0.00 0.00 0.00 2.24
518 912 8.768957 AGTACTCCCTTCGTTTTTATTTACTC 57.231 34.615 0.00 0.00 0.00 2.59
519 913 7.821359 AGTACTCCCTTCGTTTTTATTTACTCC 59.179 37.037 0.00 0.00 0.00 3.85
520 914 5.640783 ACTCCCTTCGTTTTTATTTACTCCG 59.359 40.000 0.00 0.00 0.00 4.63
521 915 4.392754 TCCCTTCGTTTTTATTTACTCCGC 59.607 41.667 0.00 0.00 0.00 5.54
522 916 4.437794 CCCTTCGTTTTTATTTACTCCGCC 60.438 45.833 0.00 0.00 0.00 6.13
523 917 4.154556 CCTTCGTTTTTATTTACTCCGCCA 59.845 41.667 0.00 0.00 0.00 5.69
524 918 5.163693 CCTTCGTTTTTATTTACTCCGCCAT 60.164 40.000 0.00 0.00 0.00 4.40
525 919 6.037391 CCTTCGTTTTTATTTACTCCGCCATA 59.963 38.462 0.00 0.00 0.00 2.74
526 920 6.981762 TCGTTTTTATTTACTCCGCCATAA 57.018 33.333 0.00 0.00 0.00 1.90
527 921 6.774084 TCGTTTTTATTTACTCCGCCATAAC 58.226 36.000 0.00 0.00 0.00 1.89
528 922 6.370994 TCGTTTTTATTTACTCCGCCATAACA 59.629 34.615 0.00 0.00 0.00 2.41
529 923 7.022384 CGTTTTTATTTACTCCGCCATAACAA 58.978 34.615 0.00 0.00 0.00 2.83
530 924 7.537991 CGTTTTTATTTACTCCGCCATAACAAA 59.462 33.333 0.00 0.00 0.00 2.83
531 925 9.361315 GTTTTTATTTACTCCGCCATAACAAAT 57.639 29.630 0.00 0.00 0.00 2.32
532 926 9.575783 TTTTTATTTACTCCGCCATAACAAATC 57.424 29.630 0.00 0.00 0.00 2.17
533 927 5.767816 ATTTACTCCGCCATAACAAATCC 57.232 39.130 0.00 0.00 0.00 3.01
534 928 2.799126 ACTCCGCCATAACAAATCCA 57.201 45.000 0.00 0.00 0.00 3.41
535 929 3.080300 ACTCCGCCATAACAAATCCAA 57.920 42.857 0.00 0.00 0.00 3.53
536 930 3.426615 ACTCCGCCATAACAAATCCAAA 58.573 40.909 0.00 0.00 0.00 3.28
537 931 3.443681 ACTCCGCCATAACAAATCCAAAG 59.556 43.478 0.00 0.00 0.00 2.77
538 932 3.426615 TCCGCCATAACAAATCCAAAGT 58.573 40.909 0.00 0.00 0.00 2.66
539 933 3.829601 TCCGCCATAACAAATCCAAAGTT 59.170 39.130 0.00 0.00 0.00 2.66
540 934 4.282195 TCCGCCATAACAAATCCAAAGTTT 59.718 37.500 0.00 0.00 0.00 2.66
541 935 5.477291 TCCGCCATAACAAATCCAAAGTTTA 59.523 36.000 0.00 0.00 0.00 2.01
542 936 6.153680 TCCGCCATAACAAATCCAAAGTTTAT 59.846 34.615 0.00 0.00 0.00 1.40
543 937 7.339721 TCCGCCATAACAAATCCAAAGTTTATA 59.660 33.333 0.00 0.00 0.00 0.98
544 938 7.976734 CCGCCATAACAAATCCAAAGTTTATAA 59.023 33.333 0.00 0.00 0.00 0.98
545 939 9.360093 CGCCATAACAAATCCAAAGTTTATAAA 57.640 29.630 0.00 0.00 0.00 1.40
610 1004 9.685276 TGTGGAAGTACATTTGATAATGAATCT 57.315 29.630 4.99 0.00 43.12 2.40
637 1031 8.984891 ATGGTGTTGATTTGTTATTGTACATG 57.015 30.769 0.00 0.00 0.00 3.21
638 1032 7.946207 TGGTGTTGATTTGTTATTGTACATGT 58.054 30.769 2.69 2.69 0.00 3.21
639 1033 8.417106 TGGTGTTGATTTGTTATTGTACATGTT 58.583 29.630 2.30 0.00 0.00 2.71
640 1034 9.900710 GGTGTTGATTTGTTATTGTACATGTTA 57.099 29.630 2.30 0.00 0.00 2.41
687 1081 8.459521 TTGACTTTGACCAAAATTAATATGCG 57.540 30.769 0.00 0.00 0.00 4.73
688 1082 7.032580 TGACTTTGACCAAAATTAATATGCGG 58.967 34.615 0.00 0.00 0.00 5.69
689 1083 7.094162 TGACTTTGACCAAAATTAATATGCGGA 60.094 33.333 0.00 0.00 0.00 5.54
690 1084 7.257722 ACTTTGACCAAAATTAATATGCGGAG 58.742 34.615 0.00 0.00 0.00 4.63
691 1085 6.767524 TTGACCAAAATTAATATGCGGAGT 57.232 33.333 0.00 0.00 0.00 3.85
692 1086 7.867305 TTGACCAAAATTAATATGCGGAGTA 57.133 32.000 0.00 0.00 0.00 2.59
693 1087 7.867305 TGACCAAAATTAATATGCGGAGTAA 57.133 32.000 0.00 0.00 0.00 2.24
694 1088 8.282455 TGACCAAAATTAATATGCGGAGTAAA 57.718 30.769 0.00 0.00 0.00 2.01
695 1089 8.908903 TGACCAAAATTAATATGCGGAGTAAAT 58.091 29.630 0.00 0.00 0.00 1.40
703 1097 9.887406 ATTAATATGCGGAGTAAATAAAAACGG 57.113 29.630 0.00 0.00 0.00 4.44
704 1098 7.556733 AATATGCGGAGTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
705 1099 4.932268 TGCGGAGTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
706 1100 3.685756 TGCGGAGTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
707 1101 3.064408 GCGGAGTAAATAAAAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
708 1102 4.506758 CGGAGTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
709 1103 4.569564 CGGAGTAAATAAAAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
710 1104 5.494724 GGAGTAAATAAAAACGGAGGGAGT 58.505 41.667 0.00 0.00 0.00 3.85
711 1105 6.627953 CGGAGTAAATAAAAACGGAGGGAGTA 60.628 42.308 0.00 0.00 0.00 2.59
722 1116 2.299297 CGGAGGGAGTATTAAATCGCCT 59.701 50.000 0.00 0.00 0.00 5.52
723 1117 3.508793 CGGAGGGAGTATTAAATCGCCTA 59.491 47.826 0.00 0.00 0.00 3.93
730 1124 6.378848 GGGAGTATTAAATCGCCTAGAGATCT 59.621 42.308 0.00 0.00 0.00 2.75
731 1125 7.093684 GGGAGTATTAAATCGCCTAGAGATCTT 60.094 40.741 0.00 0.00 0.00 2.40
732 1126 8.308207 GGAGTATTAAATCGCCTAGAGATCTTT 58.692 37.037 0.00 0.00 0.00 2.52
769 1163 1.614996 ATCGCCGTGAGATCTGATCT 58.385 50.000 19.63 19.63 43.70 2.75
847 1241 1.963515 GTGCAAAACCAAGGAGTCCAT 59.036 47.619 12.86 0.00 0.00 3.41
869 1263 4.993905 TCATCGTCACACCTGTATACTTG 58.006 43.478 4.17 1.69 0.00 3.16
903 1299 5.869649 TTTATCAAGATCAGATCGGGTCA 57.130 39.130 8.88 0.00 0.00 4.02
1001 1397 4.459089 GACGAGGCCACCCAGAGC 62.459 72.222 5.01 0.00 0.00 4.09
1035 1431 1.805945 CGCGACCGGAGAAAGAAGG 60.806 63.158 9.46 0.00 0.00 3.46
1149 1548 2.710826 GCCTCTCCTCCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
1150 1549 1.541672 CCTCTCCTCCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1202 1601 7.295952 TCTTACGAAAAGCTGAGATTTCATC 57.704 36.000 0.00 0.00 35.72 2.92
1208 1607 5.502153 AAAGCTGAGATTTCATCAGATGC 57.498 39.130 5.41 0.00 45.80 3.91
1349 2006 1.663173 GCTGGATCCGGCTAGAGAC 59.337 63.158 34.25 7.31 44.39 3.36
1668 2325 3.055819 TGATGCTGGAGTCAGGTAAAGAC 60.056 47.826 0.00 0.00 41.19 3.01
1671 2331 1.272490 CTGGAGTCAGGTAAAGACGCA 59.728 52.381 0.00 0.00 40.84 5.24
1674 2334 0.679505 AGTCAGGTAAAGACGCAGCA 59.320 50.000 0.00 0.00 40.84 4.41
1679 2339 0.444260 GGTAAAGACGCAGCAGCTTC 59.556 55.000 0.00 0.00 39.16 3.86
1689 2349 3.751175 ACGCAGCAGCTTCTATTTGTTTA 59.249 39.130 0.00 0.00 39.10 2.01
1756 2422 1.396996 GTTAGTGCTGTGCATTACGGG 59.603 52.381 0.00 0.00 41.91 5.28
1836 2502 4.669206 TCCAAAACAGACGTGGTTACTA 57.331 40.909 0.00 0.00 29.78 1.82
1905 2573 4.498323 GCTGCAAAGCGAGAATTATTTCTG 59.502 41.667 4.64 0.07 42.34 3.02
1952 2620 6.266323 TCAAGAACGAAATCTCCTAGAATCG 58.734 40.000 11.57 11.57 40.87 3.34
1997 2665 7.320443 TCTGTTTGTAATCCATGCAATCTAC 57.680 36.000 0.00 0.00 33.42 2.59
1998 2666 7.112122 TCTGTTTGTAATCCATGCAATCTACT 58.888 34.615 0.00 0.00 33.42 2.57
1999 2667 8.264347 TCTGTTTGTAATCCATGCAATCTACTA 58.736 33.333 0.00 0.00 33.42 1.82
2000 2668 8.978874 TGTTTGTAATCCATGCAATCTACTAT 57.021 30.769 0.00 0.00 33.42 2.12
2001 2669 8.839343 TGTTTGTAATCCATGCAATCTACTATG 58.161 33.333 0.00 0.00 33.42 2.23
2002 2670 7.984422 TTGTAATCCATGCAATCTACTATGG 57.016 36.000 0.00 0.00 41.09 2.74
2003 2671 7.078249 TGTAATCCATGCAATCTACTATGGT 57.922 36.000 0.00 0.00 40.68 3.55
2004 2672 8.201242 TGTAATCCATGCAATCTACTATGGTA 57.799 34.615 0.00 0.00 40.68 3.25
2005 2673 8.094548 TGTAATCCATGCAATCTACTATGGTAC 58.905 37.037 0.00 0.00 40.68 3.34
2006 2674 6.942163 ATCCATGCAATCTACTATGGTACT 57.058 37.500 0.00 0.00 40.68 2.73
2007 2675 6.346477 TCCATGCAATCTACTATGGTACTC 57.654 41.667 0.00 0.00 40.68 2.59
2008 2676 5.246203 TCCATGCAATCTACTATGGTACTCC 59.754 44.000 0.00 0.00 40.68 3.85
2009 2677 5.482908 CATGCAATCTACTATGGTACTCCC 58.517 45.833 0.00 0.00 0.00 4.30
2010 2678 4.816126 TGCAATCTACTATGGTACTCCCT 58.184 43.478 0.00 0.00 0.00 4.20
2011 2679 4.833380 TGCAATCTACTATGGTACTCCCTC 59.167 45.833 0.00 0.00 0.00 4.30
2012 2680 4.221041 GCAATCTACTATGGTACTCCCTCC 59.779 50.000 0.00 0.00 0.00 4.30
2013 2681 3.784511 TCTACTATGGTACTCCCTCCG 57.215 52.381 0.00 0.00 0.00 4.63
2014 2682 3.051581 TCTACTATGGTACTCCCTCCGT 58.948 50.000 0.00 0.00 0.00 4.69
2015 2683 2.361643 ACTATGGTACTCCCTCCGTC 57.638 55.000 0.00 0.00 0.00 4.79
2016 2684 1.133544 ACTATGGTACTCCCTCCGTCC 60.134 57.143 0.00 0.00 0.00 4.79
2017 2685 1.145325 CTATGGTACTCCCTCCGTCCT 59.855 57.143 0.00 0.00 0.00 3.85
2018 2686 1.229131 ATGGTACTCCCTCCGTCCTA 58.771 55.000 0.00 0.00 0.00 2.94
2019 2687 1.002069 TGGTACTCCCTCCGTCCTAA 58.998 55.000 0.00 0.00 0.00 2.69
2020 2688 1.358787 TGGTACTCCCTCCGTCCTAAA 59.641 52.381 0.00 0.00 0.00 1.85
2021 2689 2.225343 TGGTACTCCCTCCGTCCTAAAA 60.225 50.000 0.00 0.00 0.00 1.52
2022 2690 3.036819 GGTACTCCCTCCGTCCTAAAAT 58.963 50.000 0.00 0.00 0.00 1.82
2023 2691 4.218312 GGTACTCCCTCCGTCCTAAAATA 58.782 47.826 0.00 0.00 0.00 1.40
2024 2692 4.651045 GGTACTCCCTCCGTCCTAAAATAA 59.349 45.833 0.00 0.00 0.00 1.40
2025 2693 5.221402 GGTACTCCCTCCGTCCTAAAATAAG 60.221 48.000 0.00 0.00 0.00 1.73
2026 2694 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
2027 2695 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
2028 2696 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
2029 2697 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
2030 2698 4.161754 CCCTCCGTCCTAAAATAAGTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2031 2699 5.349809 CCTCCGTCCTAAAATAAGTGTCTC 58.650 45.833 0.00 0.00 0.00 3.36
2032 2700 5.105473 CCTCCGTCCTAAAATAAGTGTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
2033 2701 6.349243 TCCGTCCTAAAATAAGTGTCTCAA 57.651 37.500 0.00 0.00 0.00 3.02
2034 2702 6.161381 TCCGTCCTAAAATAAGTGTCTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
2035 2703 6.014840 TCCGTCCTAAAATAAGTGTCTCAACT 60.015 38.462 0.00 0.00 0.00 3.16
2036 2704 6.649557 CCGTCCTAAAATAAGTGTCTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
2037 2705 7.172703 CCGTCCTAAAATAAGTGTCTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
2038 2706 9.199982 CGTCCTAAAATAAGTGTCTCAACTTTA 57.800 33.333 0.00 0.00 40.77 1.85
2079 2747 9.802039 AGCTCTAGTATAAATCTGTACTAAGCT 57.198 33.333 15.41 15.41 38.88 3.74
2087 2755 8.934507 ATAAATCTGTACTAAGCTCAAGACAC 57.065 34.615 3.19 2.09 0.00 3.67
2088 2756 6.597832 AATCTGTACTAAGCTCAAGACACT 57.402 37.500 3.19 0.00 0.00 3.55
2089 2757 6.597832 ATCTGTACTAAGCTCAAGACACTT 57.402 37.500 3.19 0.00 0.00 3.16
2090 2758 7.704578 ATCTGTACTAAGCTCAAGACACTTA 57.295 36.000 3.19 0.00 0.00 2.24
2091 2759 7.704578 TCTGTACTAAGCTCAAGACACTTAT 57.295 36.000 3.19 0.00 0.00 1.73
2092 2760 8.123639 TCTGTACTAAGCTCAAGACACTTATT 57.876 34.615 3.19 0.00 0.00 1.40
2093 2761 8.585881 TCTGTACTAAGCTCAAGACACTTATTT 58.414 33.333 3.19 0.00 0.00 1.40
2094 2762 9.209175 CTGTACTAAGCTCAAGACACTTATTTT 57.791 33.333 3.19 0.00 0.00 1.82
2095 2763 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
2096 2764 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
2097 2765 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
2098 2766 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
2099 2767 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2100 2768 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2101 2769 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2102 2770 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2103 2771 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2104 2772 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2105 2773 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2124 2792 6.570764 CGGAGGGAGTAATAAATAGAGTCAGC 60.571 46.154 0.00 0.00 0.00 4.26
2168 2836 6.371548 TGCTTGTACTTGTGACTATGGAATTC 59.628 38.462 0.00 0.00 0.00 2.17
2174 2842 6.638610 ACTTGTGACTATGGAATTCTCTCTG 58.361 40.000 5.23 0.00 0.00 3.35
2180 2848 7.226325 GTGACTATGGAATTCTCTCTGGATTTG 59.774 40.741 5.23 0.00 0.00 2.32
2181 2849 7.092712 TGACTATGGAATTCTCTCTGGATTTGT 60.093 37.037 5.23 0.00 0.00 2.83
2184 2852 4.937620 TGGAATTCTCTCTGGATTTGTTCG 59.062 41.667 5.23 0.00 0.00 3.95
2191 2859 9.667107 ATTCTCTCTGGATTTGTTCGTAAATTA 57.333 29.630 0.00 0.00 30.78 1.40
2217 2885 5.248870 ACAGAAAACATCACAAAGTGACC 57.751 39.130 1.43 0.00 45.65 4.02
2221 2889 7.285401 ACAGAAAACATCACAAAGTGACCTTAT 59.715 33.333 1.43 0.00 45.65 1.73
2224 2892 9.959749 GAAAACATCACAAAGTGACCTTATTTA 57.040 29.630 1.43 0.00 45.65 1.40
2226 2894 9.744468 AAACATCACAAAGTGACCTTATTTAAC 57.256 29.630 1.43 0.00 45.65 2.01
2227 2895 8.458573 ACATCACAAAGTGACCTTATTTAACA 57.541 30.769 1.43 0.00 45.65 2.41
2228 2896 8.567948 ACATCACAAAGTGACCTTATTTAACAG 58.432 33.333 1.43 0.00 45.65 3.16
2232 2900 9.233232 CACAAAGTGACCTTATTTAACAGTTTC 57.767 33.333 0.00 0.00 35.23 2.78
2308 2976 2.543848 TGCTGCTATTGCGCTTATGTAC 59.456 45.455 9.73 0.00 43.34 2.90
2309 2977 2.096218 GCTGCTATTGCGCTTATGTACC 60.096 50.000 9.73 0.00 43.34 3.34
2322 2990 2.879002 ATGTACCTCTGATGTGAGCG 57.121 50.000 0.00 0.00 33.02 5.03
2324 2992 1.103803 GTACCTCTGATGTGAGCGGA 58.896 55.000 0.00 0.00 33.02 5.54
2328 2996 1.734465 CCTCTGATGTGAGCGGAAAAC 59.266 52.381 0.00 0.00 33.02 2.43
2330 2998 2.414481 CTCTGATGTGAGCGGAAAACAG 59.586 50.000 0.00 0.00 0.00 3.16
2333 3001 1.197721 GATGTGAGCGGAAAACAGTGG 59.802 52.381 0.00 0.00 0.00 4.00
2342 3010 2.252714 GGAAAACAGTGGGGGCATTAA 58.747 47.619 0.00 0.00 0.00 1.40
2347 3015 4.331159 AACAGTGGGGGCATTAACTTAT 57.669 40.909 0.00 0.00 0.00 1.73
2360 3028 7.011016 GGGCATTAACTTATGTTATTGTTTGGC 59.989 37.037 17.63 13.82 39.89 4.52
2368 3036 7.440856 ACTTATGTTATTGTTTGGCCTTTTGTG 59.559 33.333 3.32 0.00 0.00 3.33
2414 3082 6.867662 ACAATAGGAATAGCTGTGTATTGC 57.132 37.500 14.98 5.67 33.18 3.56
2420 3090 6.058183 AGGAATAGCTGTGTATTGCTTAAGG 58.942 40.000 4.29 0.00 37.70 2.69
2445 3115 8.245491 GGCATTTTTCCTGCAATATTTTTGAAT 58.755 29.630 0.00 0.00 41.47 2.57
2446 3116 9.068008 GCATTTTTCCTGCAATATTTTTGAATG 57.932 29.630 0.00 0.00 39.46 2.67
2491 3161 8.840833 TGAAAGTACATGTTCTTGTATAAGCA 57.159 30.769 17.24 6.06 34.76 3.91
2497 3167 7.686438 ACATGTTCTTGTATAAGCATGTGAA 57.314 32.000 18.15 0.00 41.70 3.18
2508 3178 8.833493 TGTATAAGCATGTGAATTGATTCTGAG 58.167 33.333 5.42 0.00 37.67 3.35
2543 3213 8.446489 TTGCAATAAATGTTTAATGTCGACTG 57.554 30.769 17.92 2.22 0.00 3.51
2545 3215 7.536964 TGCAATAAATGTTTAATGTCGACTGTG 59.463 33.333 17.92 0.00 0.00 3.66
2596 3289 6.373186 TGTTAGTCTATGATGTCGTCGATT 57.627 37.500 0.00 0.00 0.00 3.34
2608 3301 4.624015 TGTCGTCGATTAGTGTTTCCTTT 58.376 39.130 0.00 0.00 0.00 3.11
2609 3302 4.446385 TGTCGTCGATTAGTGTTTCCTTTG 59.554 41.667 0.00 0.00 0.00 2.77
2613 3306 4.213482 GTCGATTAGTGTTTCCTTTGCAGT 59.787 41.667 0.00 0.00 0.00 4.40
2689 3382 5.013079 TCCTACAGTTGAATCCAGTGTTGAT 59.987 40.000 0.00 0.00 0.00 2.57
2691 3384 4.074970 ACAGTTGAATCCAGTGTTGATCC 58.925 43.478 0.00 0.00 0.00 3.36
2787 3480 1.821136 GCAGAAGCACTTGCCCTTTAT 59.179 47.619 0.00 0.00 43.38 1.40
3241 3937 4.318974 GCTTTGCTGCTAAACATTTGTTGG 60.319 41.667 0.00 0.00 38.44 3.77
3295 3991 4.493547 CAATTTGGTAACGGCAATGTGAT 58.506 39.130 0.00 0.00 42.51 3.06
3329 4025 8.567948 TGTTTCCTACAAAGTCATTTTCTCATC 58.432 33.333 0.00 0.00 32.64 2.92
3332 4028 7.461749 TCCTACAAAGTCATTTTCTCATCCTT 58.538 34.615 0.00 0.00 0.00 3.36
3333 4029 7.391554 TCCTACAAAGTCATTTTCTCATCCTTG 59.608 37.037 0.00 0.00 0.00 3.61
3334 4030 6.336842 ACAAAGTCATTTTCTCATCCTTGG 57.663 37.500 0.00 0.00 0.00 3.61
3335 4031 5.835280 ACAAAGTCATTTTCTCATCCTTGGT 59.165 36.000 0.00 0.00 0.00 3.67
3336 4032 5.972107 AAGTCATTTTCTCATCCTTGGTG 57.028 39.130 0.00 0.00 0.00 4.17
3337 4033 3.760684 AGTCATTTTCTCATCCTTGGTGC 59.239 43.478 0.00 0.00 0.00 5.01
3338 4034 3.760684 GTCATTTTCTCATCCTTGGTGCT 59.239 43.478 0.00 0.00 0.00 4.40
3339 4035 3.760151 TCATTTTCTCATCCTTGGTGCTG 59.240 43.478 0.00 0.00 0.00 4.41
3340 4036 2.957402 TTTCTCATCCTTGGTGCTGT 57.043 45.000 0.00 0.00 0.00 4.40
3341 4037 2.957402 TTCTCATCCTTGGTGCTGTT 57.043 45.000 0.00 0.00 0.00 3.16
3342 4038 4.365514 TTTCTCATCCTTGGTGCTGTTA 57.634 40.909 0.00 0.00 0.00 2.41
3393 4090 6.859017 ACAATTTACCAACTTTCGTCTGTTT 58.141 32.000 0.00 0.00 0.00 2.83
3415 4112 7.121759 TGTTTACTGTTCTAATACGCTACTCCT 59.878 37.037 0.00 0.00 0.00 3.69
3437 4134 6.765989 TCCTTCCGTTCACAATTATAAGATGG 59.234 38.462 6.14 0.00 0.00 3.51
3439 4136 7.254795 CCTTCCGTTCACAATTATAAGATGGTC 60.255 40.741 6.14 0.00 0.00 4.02
3440 4137 6.884832 TCCGTTCACAATTATAAGATGGTCT 58.115 36.000 6.14 0.00 0.00 3.85
3456 4153 8.774546 AAGATGGTCTACTCTCAGATTAATCA 57.225 34.615 17.56 0.00 0.00 2.57
3459 4156 8.718158 ATGGTCTACTCTCAGATTAATCATCA 57.282 34.615 17.56 0.59 33.75 3.07
3479 4176 9.725019 ATCATCACTGATTTAGTACAAAGTTGA 57.275 29.630 0.00 0.00 39.09 3.18
3492 4189 8.431910 AGTACAAAGTTGAAGAGGGAGTAATA 57.568 34.615 0.00 0.00 0.00 0.98
3660 4451 3.570926 TCCTTGTGTAGCAGTAACTCG 57.429 47.619 0.00 0.00 0.00 4.18
3691 4482 3.009363 TCATGACAGCAAGATTCAGGGAA 59.991 43.478 0.00 0.00 0.00 3.97
3692 4483 2.783135 TGACAGCAAGATTCAGGGAAC 58.217 47.619 0.00 0.00 0.00 3.62
3764 4557 6.968904 GCAATGGTAAATCATCAAGTACACAG 59.031 38.462 0.00 0.00 0.00 3.66
3765 4558 7.362056 GCAATGGTAAATCATCAAGTACACAGT 60.362 37.037 0.00 0.00 0.00 3.55
3797 4608 1.691976 TGTCTGTTCCGATCCACTGTT 59.308 47.619 0.00 0.00 0.00 3.16
3798 4609 2.104111 TGTCTGTTCCGATCCACTGTTT 59.896 45.455 0.00 0.00 0.00 2.83
3799 4610 2.737252 GTCTGTTCCGATCCACTGTTTC 59.263 50.000 0.00 0.00 0.00 2.78
3800 4611 2.367241 TCTGTTCCGATCCACTGTTTCA 59.633 45.455 0.00 0.00 0.00 2.69
3801 4612 2.480419 CTGTTCCGATCCACTGTTTCAC 59.520 50.000 0.00 0.00 0.00 3.18
3802 4613 2.104111 TGTTCCGATCCACTGTTTCACT 59.896 45.455 0.00 0.00 0.00 3.41
3803 4614 2.455674 TCCGATCCACTGTTTCACTG 57.544 50.000 0.00 0.00 0.00 3.66
3804 4615 1.691976 TCCGATCCACTGTTTCACTGT 59.308 47.619 0.00 0.00 0.00 3.55
3845 4656 5.806286 TGAGAAGTTTTGTTCTTGCTAACG 58.194 37.500 0.00 0.00 36.89 3.18
3862 4673 4.381718 GCTAACGAAGGGACACTATCTGTT 60.382 45.833 0.00 0.00 31.03 3.16
3910 4721 5.947663 TGAGGAATTTTGTTCTCCCTAACA 58.052 37.500 0.00 0.00 37.58 2.41
3998 4809 3.535629 CTTGAGGGCAGCGGTGACA 62.536 63.158 23.96 11.00 30.34 3.58
4108 4919 6.735694 GCCTGAAGAACAATTTAGAGCAACAA 60.736 38.462 0.00 0.00 0.00 2.83
4126 4937 7.380536 AGCAACAACACAATACAATCAATCAT 58.619 30.769 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.845781 TCAAGTTCCTGCTTCTCTGTT 57.154 42.857 0.00 0.00 0.00 3.16
2 3 3.672808 CATCAAGTTCCTGCTTCTCTGT 58.327 45.455 0.00 0.00 0.00 3.41
3 4 2.419324 GCATCAAGTTCCTGCTTCTCTG 59.581 50.000 0.00 0.00 33.15 3.35
4 5 2.305343 AGCATCAAGTTCCTGCTTCTCT 59.695 45.455 3.38 0.00 43.44 3.10
5 6 2.709213 AGCATCAAGTTCCTGCTTCTC 58.291 47.619 3.38 0.00 43.44 2.87
6 7 2.875094 AGCATCAAGTTCCTGCTTCT 57.125 45.000 3.38 0.00 43.44 2.85
10 11 3.648339 TTCAAAGCATCAAGTTCCTGC 57.352 42.857 0.00 0.00 36.15 4.85
11 12 6.501781 GGATATTCAAAGCATCAAGTTCCTG 58.498 40.000 0.00 0.00 0.00 3.86
12 13 5.297776 CGGATATTCAAAGCATCAAGTTCCT 59.702 40.000 0.00 0.00 0.00 3.36
13 14 5.514279 CGGATATTCAAAGCATCAAGTTCC 58.486 41.667 0.00 0.00 0.00 3.62
14 15 4.972440 GCGGATATTCAAAGCATCAAGTTC 59.028 41.667 0.00 0.00 0.00 3.01
15 16 4.496341 CGCGGATATTCAAAGCATCAAGTT 60.496 41.667 0.00 0.00 0.00 2.66
16 17 3.002656 CGCGGATATTCAAAGCATCAAGT 59.997 43.478 0.00 0.00 0.00 3.16
17 18 3.002656 ACGCGGATATTCAAAGCATCAAG 59.997 43.478 12.47 0.00 0.00 3.02
18 19 2.942376 ACGCGGATATTCAAAGCATCAA 59.058 40.909 12.47 0.00 0.00 2.57
19 20 2.543848 GACGCGGATATTCAAAGCATCA 59.456 45.455 12.47 0.00 0.00 3.07
20 21 2.802816 AGACGCGGATATTCAAAGCATC 59.197 45.455 12.47 0.00 0.00 3.91
21 22 2.545526 CAGACGCGGATATTCAAAGCAT 59.454 45.455 12.47 0.00 0.00 3.79
22 23 1.933181 CAGACGCGGATATTCAAAGCA 59.067 47.619 12.47 0.00 0.00 3.91
23 24 2.201732 TCAGACGCGGATATTCAAAGC 58.798 47.619 12.47 0.00 0.00 3.51
24 25 3.001330 GGTTCAGACGCGGATATTCAAAG 59.999 47.826 12.47 0.00 0.00 2.77
25 26 2.933906 GGTTCAGACGCGGATATTCAAA 59.066 45.455 12.47 0.00 0.00 2.69
26 27 2.546778 GGTTCAGACGCGGATATTCAA 58.453 47.619 12.47 0.00 0.00 2.69
27 28 1.202486 GGGTTCAGACGCGGATATTCA 60.202 52.381 12.47 0.00 0.00 2.57
28 29 1.068741 AGGGTTCAGACGCGGATATTC 59.931 52.381 12.47 0.00 43.00 1.75
29 30 1.068741 GAGGGTTCAGACGCGGATATT 59.931 52.381 12.47 0.00 43.00 1.28
30 31 0.674534 GAGGGTTCAGACGCGGATAT 59.325 55.000 12.47 0.00 43.00 1.63
31 32 1.389609 GGAGGGTTCAGACGCGGATA 61.390 60.000 12.47 0.00 43.00 2.59
32 33 2.722201 GGAGGGTTCAGACGCGGAT 61.722 63.158 12.47 0.00 43.00 4.18
33 34 3.379445 GGAGGGTTCAGACGCGGA 61.379 66.667 12.47 0.00 43.00 5.54
34 35 3.691342 TGGAGGGTTCAGACGCGG 61.691 66.667 12.47 0.00 43.00 6.46
35 36 2.432628 GTGGAGGGTTCAGACGCG 60.433 66.667 3.53 3.53 43.00 6.01
36 37 2.047179 GGTGGAGGGTTCAGACGC 60.047 66.667 0.00 0.00 38.89 5.19
37 38 1.191535 TATGGTGGAGGGTTCAGACG 58.808 55.000 0.00 0.00 0.00 4.18
38 39 2.092914 CCTTATGGTGGAGGGTTCAGAC 60.093 54.545 0.00 0.00 0.00 3.51
39 40 2.196595 CCTTATGGTGGAGGGTTCAGA 58.803 52.381 0.00 0.00 0.00 3.27
40 41 2.196595 TCCTTATGGTGGAGGGTTCAG 58.803 52.381 0.00 0.00 33.73 3.02
41 42 2.352561 TCCTTATGGTGGAGGGTTCA 57.647 50.000 0.00 0.00 33.73 3.18
42 43 2.158608 CCATCCTTATGGTGGAGGGTTC 60.159 54.545 5.42 0.00 46.88 3.62
43 44 1.852965 CCATCCTTATGGTGGAGGGTT 59.147 52.381 5.42 0.00 46.88 4.11
44 45 1.522900 CCATCCTTATGGTGGAGGGT 58.477 55.000 5.42 0.00 46.88 4.34
53 54 2.675844 TGAAAACGACGCCATCCTTATG 59.324 45.455 0.00 0.00 0.00 1.90
54 55 2.980568 TGAAAACGACGCCATCCTTAT 58.019 42.857 0.00 0.00 0.00 1.73
55 56 2.459060 TGAAAACGACGCCATCCTTA 57.541 45.000 0.00 0.00 0.00 2.69
56 57 1.821216 ATGAAAACGACGCCATCCTT 58.179 45.000 0.00 0.00 0.00 3.36
57 58 2.684001 TATGAAAACGACGCCATCCT 57.316 45.000 0.00 0.00 0.00 3.24
58 59 3.548014 CCAATATGAAAACGACGCCATCC 60.548 47.826 0.00 0.00 0.00 3.51
59 60 3.311322 TCCAATATGAAAACGACGCCATC 59.689 43.478 0.00 0.00 0.00 3.51
60 61 3.275143 TCCAATATGAAAACGACGCCAT 58.725 40.909 0.00 0.00 0.00 4.40
61 62 2.675844 CTCCAATATGAAAACGACGCCA 59.324 45.455 0.00 0.00 0.00 5.69
62 63 2.031683 CCTCCAATATGAAAACGACGCC 59.968 50.000 0.00 0.00 0.00 5.68
63 64 2.676342 ACCTCCAATATGAAAACGACGC 59.324 45.455 0.00 0.00 0.00 5.19
64 65 3.485216 GCACCTCCAATATGAAAACGACG 60.485 47.826 0.00 0.00 0.00 5.12
65 66 3.485216 CGCACCTCCAATATGAAAACGAC 60.485 47.826 0.00 0.00 0.00 4.34
66 67 2.675844 CGCACCTCCAATATGAAAACGA 59.324 45.455 0.00 0.00 0.00 3.85
67 68 2.418628 ACGCACCTCCAATATGAAAACG 59.581 45.455 0.00 0.00 0.00 3.60
68 69 5.554822 TTACGCACCTCCAATATGAAAAC 57.445 39.130 0.00 0.00 0.00 2.43
69 70 6.375736 TGAATTACGCACCTCCAATATGAAAA 59.624 34.615 0.00 0.00 0.00 2.29
70 71 5.883115 TGAATTACGCACCTCCAATATGAAA 59.117 36.000 0.00 0.00 0.00 2.69
71 72 5.432645 TGAATTACGCACCTCCAATATGAA 58.567 37.500 0.00 0.00 0.00 2.57
72 73 5.029807 TGAATTACGCACCTCCAATATGA 57.970 39.130 0.00 0.00 0.00 2.15
73 74 5.749596 TTGAATTACGCACCTCCAATATG 57.250 39.130 0.00 0.00 0.00 1.78
74 75 6.299141 AGATTGAATTACGCACCTCCAATAT 58.701 36.000 0.00 0.00 0.00 1.28
75 76 5.680619 AGATTGAATTACGCACCTCCAATA 58.319 37.500 0.00 0.00 0.00 1.90
76 77 4.526970 AGATTGAATTACGCACCTCCAAT 58.473 39.130 0.00 0.00 0.00 3.16
77 78 3.938963 GAGATTGAATTACGCACCTCCAA 59.061 43.478 0.00 0.00 0.00 3.53
78 79 3.531538 GAGATTGAATTACGCACCTCCA 58.468 45.455 0.00 0.00 0.00 3.86
79 80 2.872858 GGAGATTGAATTACGCACCTCC 59.127 50.000 0.00 0.00 33.17 4.30
80 81 2.872858 GGGAGATTGAATTACGCACCTC 59.127 50.000 0.00 0.00 0.00 3.85
81 82 2.741878 CGGGAGATTGAATTACGCACCT 60.742 50.000 0.00 0.00 0.00 4.00
82 83 1.597663 CGGGAGATTGAATTACGCACC 59.402 52.381 0.00 0.00 0.00 5.01
83 84 1.003866 GCGGGAGATTGAATTACGCAC 60.004 52.381 0.00 0.00 44.32 5.34
84 85 1.295792 GCGGGAGATTGAATTACGCA 58.704 50.000 0.00 0.00 44.32 5.24
85 86 1.295792 TGCGGGAGATTGAATTACGC 58.704 50.000 0.00 0.00 45.05 4.42
86 87 5.465390 TCTTATTGCGGGAGATTGAATTACG 59.535 40.000 0.00 0.00 0.00 3.18
87 88 6.861065 TCTTATTGCGGGAGATTGAATTAC 57.139 37.500 0.00 0.00 0.00 1.89
88 89 6.430925 CCATCTTATTGCGGGAGATTGAATTA 59.569 38.462 0.00 0.00 0.00 1.40
89 90 5.242393 CCATCTTATTGCGGGAGATTGAATT 59.758 40.000 0.00 0.00 0.00 2.17
90 91 4.763793 CCATCTTATTGCGGGAGATTGAAT 59.236 41.667 0.00 0.00 0.00 2.57
91 92 4.136796 CCATCTTATTGCGGGAGATTGAA 58.863 43.478 0.00 0.00 0.00 2.69
92 93 3.496692 CCCATCTTATTGCGGGAGATTGA 60.497 47.826 0.00 0.00 41.62 2.57
93 94 2.816087 CCCATCTTATTGCGGGAGATTG 59.184 50.000 0.00 0.00 41.62 2.67
94 95 2.224867 CCCCATCTTATTGCGGGAGATT 60.225 50.000 0.00 0.00 41.62 2.40
95 96 1.352352 CCCCATCTTATTGCGGGAGAT 59.648 52.381 0.00 0.00 41.62 2.75
96 97 0.764890 CCCCATCTTATTGCGGGAGA 59.235 55.000 0.00 0.00 41.62 3.71
97 98 0.250901 CCCCCATCTTATTGCGGGAG 60.251 60.000 0.00 0.00 41.62 4.30
98 99 1.843421 CCCCCATCTTATTGCGGGA 59.157 57.895 0.00 0.00 41.62 5.14
99 100 1.903404 GCCCCCATCTTATTGCGGG 60.903 63.158 0.00 0.00 37.70 6.13
100 101 0.540365 ATGCCCCCATCTTATTGCGG 60.540 55.000 0.00 0.00 0.00 5.69
101 102 2.198827 TATGCCCCCATCTTATTGCG 57.801 50.000 0.00 0.00 32.85 4.85
102 103 3.448660 GGAATATGCCCCCATCTTATTGC 59.551 47.826 0.00 0.00 32.85 3.56
103 104 4.026052 GGGAATATGCCCCCATCTTATTG 58.974 47.826 7.71 0.00 42.62 1.90
104 105 4.337264 GGGAATATGCCCCCATCTTATT 57.663 45.455 7.71 0.00 42.62 1.40
118 119 2.174854 GCGGGGCATATTAGGGGAATAT 59.825 50.000 0.00 0.00 40.73 1.28
119 120 1.562475 GCGGGGCATATTAGGGGAATA 59.438 52.381 0.00 0.00 34.46 1.75
120 121 0.331616 GCGGGGCATATTAGGGGAAT 59.668 55.000 0.00 0.00 0.00 3.01
121 122 1.063070 TGCGGGGCATATTAGGGGAA 61.063 55.000 0.00 0.00 31.71 3.97
122 123 1.462432 TGCGGGGCATATTAGGGGA 60.462 57.895 0.00 0.00 31.71 4.81
123 124 3.166434 TGCGGGGCATATTAGGGG 58.834 61.111 0.00 0.00 31.71 4.79
135 136 4.776322 TGTCGGGAAGCATGCGGG 62.776 66.667 13.01 1.06 0.00 6.13
136 137 2.514592 ATGTCGGGAAGCATGCGG 60.515 61.111 13.01 0.69 0.00 5.69
137 138 0.249447 TAGATGTCGGGAAGCATGCG 60.249 55.000 13.01 0.00 0.00 4.73
138 139 1.506493 CTAGATGTCGGGAAGCATGC 58.494 55.000 10.51 10.51 0.00 4.06
139 140 1.688735 TCCTAGATGTCGGGAAGCATG 59.311 52.381 0.00 0.00 0.00 4.06
140 141 2.088104 TCCTAGATGTCGGGAAGCAT 57.912 50.000 0.00 0.00 0.00 3.79
141 142 1.688735 CATCCTAGATGTCGGGAAGCA 59.311 52.381 0.00 0.00 32.53 3.91
142 143 1.001406 CCATCCTAGATGTCGGGAAGC 59.999 57.143 4.04 0.00 32.53 3.86
143 144 1.001406 GCCATCCTAGATGTCGGGAAG 59.999 57.143 4.04 0.00 32.53 3.46
144 145 1.048601 GCCATCCTAGATGTCGGGAA 58.951 55.000 4.04 0.00 32.53 3.97
145 146 0.188587 AGCCATCCTAGATGTCGGGA 59.811 55.000 4.04 0.00 0.00 5.14
146 147 0.319728 CAGCCATCCTAGATGTCGGG 59.680 60.000 4.04 0.00 0.00 5.14
147 148 0.320247 GCAGCCATCCTAGATGTCGG 60.320 60.000 4.04 0.00 0.00 4.79
148 149 0.390492 TGCAGCCATCCTAGATGTCG 59.610 55.000 4.04 0.00 0.00 4.35
149 150 2.103771 TCTTGCAGCCATCCTAGATGTC 59.896 50.000 4.04 0.00 0.00 3.06
150 151 2.104451 CTCTTGCAGCCATCCTAGATGT 59.896 50.000 4.04 0.00 0.00 3.06
151 152 2.768698 CTCTTGCAGCCATCCTAGATG 58.231 52.381 0.00 0.00 0.00 2.90
152 153 1.072015 GCTCTTGCAGCCATCCTAGAT 59.928 52.381 0.00 0.00 43.17 1.98
153 154 0.467384 GCTCTTGCAGCCATCCTAGA 59.533 55.000 0.00 0.00 43.17 2.43
154 155 3.003740 GCTCTTGCAGCCATCCTAG 57.996 57.895 0.00 0.00 43.17 3.02
163 164 6.772452 AACTTGGTAGTTGATGCTCTTGCAG 61.772 44.000 0.00 0.00 46.59 4.41
165 166 3.077359 ACTTGGTAGTTGATGCTCTTGC 58.923 45.455 0.00 0.00 40.20 4.01
176 177 7.724061 ACACCATTTCTATTCAACTTGGTAGTT 59.276 33.333 0.00 0.00 45.40 2.24
177 178 7.231467 ACACCATTTCTATTCAACTTGGTAGT 58.769 34.615 0.00 0.00 34.37 2.73
178 179 7.687941 ACACCATTTCTATTCAACTTGGTAG 57.312 36.000 0.00 0.00 34.37 3.18
179 180 9.226606 CTAACACCATTTCTATTCAACTTGGTA 57.773 33.333 0.00 0.00 34.37 3.25
180 181 6.976934 AACACCATTTCTATTCAACTTGGT 57.023 33.333 0.00 0.00 36.46 3.67
181 182 7.362920 CCCTAACACCATTTCTATTCAACTTGG 60.363 40.741 0.00 0.00 0.00 3.61
182 183 7.362920 CCCCTAACACCATTTCTATTCAACTTG 60.363 40.741 0.00 0.00 0.00 3.16
183 184 6.663523 CCCCTAACACCATTTCTATTCAACTT 59.336 38.462 0.00 0.00 0.00 2.66
184 185 6.011981 TCCCCTAACACCATTTCTATTCAACT 60.012 38.462 0.00 0.00 0.00 3.16
185 186 6.184789 TCCCCTAACACCATTTCTATTCAAC 58.815 40.000 0.00 0.00 0.00 3.18
186 187 6.395780 TCCCCTAACACCATTTCTATTCAA 57.604 37.500 0.00 0.00 0.00 2.69
187 188 6.159575 TGATCCCCTAACACCATTTCTATTCA 59.840 38.462 0.00 0.00 0.00 2.57
188 189 6.486993 GTGATCCCCTAACACCATTTCTATTC 59.513 42.308 0.00 0.00 0.00 1.75
189 190 6.365520 GTGATCCCCTAACACCATTTCTATT 58.634 40.000 0.00 0.00 0.00 1.73
190 191 5.941788 GTGATCCCCTAACACCATTTCTAT 58.058 41.667 0.00 0.00 0.00 1.98
191 192 5.367945 GTGATCCCCTAACACCATTTCTA 57.632 43.478 0.00 0.00 0.00 2.10
192 193 4.236527 GTGATCCCCTAACACCATTTCT 57.763 45.455 0.00 0.00 0.00 2.52
229 230 2.417516 CCTATGTCGCCACCTCCG 59.582 66.667 0.00 0.00 0.00 4.63
241 242 1.191535 TGGTGAAGTCGGACCCTATG 58.808 55.000 4.14 0.00 0.00 2.23
270 271 1.835494 TCTAGTGGTAGAACTGCGCT 58.165 50.000 9.73 0.00 31.94 5.92
271 272 2.649331 TTCTAGTGGTAGAACTGCGC 57.351 50.000 0.00 0.00 39.86 6.09
272 273 4.175787 AGTTTCTAGTGGTAGAACTGCG 57.824 45.455 0.00 0.00 43.63 5.18
308 310 2.539302 CTTTGACCCCCAATGGATTGT 58.461 47.619 0.00 0.00 36.06 2.71
339 341 5.385628 TCATCTTGAGAGAGAGATCCTCA 57.614 43.478 12.08 4.66 44.40 3.86
341 343 7.333779 TCTATCATCTTGAGAGAGAGATCCT 57.666 40.000 0.00 0.00 39.53 3.24
345 347 6.126215 ACCCTTCTATCATCTTGAGAGAGAGA 60.126 42.308 2.52 0.00 44.36 3.10
350 352 6.098124 ACTGAACCCTTCTATCATCTTGAGAG 59.902 42.308 0.00 0.00 37.08 3.20
363 365 4.349342 ACATTTGAGAGACTGAACCCTTCT 59.651 41.667 0.00 0.00 0.00 2.85
365 367 4.392940 CACATTTGAGAGACTGAACCCTT 58.607 43.478 0.00 0.00 0.00 3.95
370 372 4.341366 TGAGCACATTTGAGAGACTGAA 57.659 40.909 0.00 0.00 0.00 3.02
381 383 5.251764 GCCCTATCTCATATGAGCACATTT 58.748 41.667 25.27 9.66 41.80 2.32
382 384 4.622457 CGCCCTATCTCATATGAGCACATT 60.622 45.833 25.27 11.15 41.80 2.71
383 385 3.118847 CGCCCTATCTCATATGAGCACAT 60.119 47.826 25.27 16.78 41.80 3.21
384 386 2.232208 CGCCCTATCTCATATGAGCACA 59.768 50.000 25.27 11.01 41.80 4.57
385 387 2.232452 ACGCCCTATCTCATATGAGCAC 59.768 50.000 25.27 10.84 41.80 4.40
398 400 0.604578 AACGTACACACACGCCCTAT 59.395 50.000 0.00 0.00 45.77 2.57
412 414 5.884232 ACATACACTCACCTCTATGAACGTA 59.116 40.000 0.00 0.00 0.00 3.57
413 415 4.705507 ACATACACTCACCTCTATGAACGT 59.294 41.667 0.00 0.00 0.00 3.99
414 416 5.037385 CACATACACTCACCTCTATGAACG 58.963 45.833 0.00 0.00 0.00 3.95
419 423 6.924913 ATATGCACATACACTCACCTCTAT 57.075 37.500 0.00 0.00 0.00 1.98
420 424 8.306761 CAATATATGCACATACACTCACCTCTA 58.693 37.037 0.00 0.00 0.00 2.43
421 425 6.924913 ATATATGCACATACACTCACCTCT 57.075 37.500 0.00 0.00 0.00 3.69
423 427 7.066307 TCAATATATGCACATACACTCACCT 57.934 36.000 0.00 0.00 0.00 4.00
425 429 7.439356 ACACTCAATATATGCACATACACTCAC 59.561 37.037 0.00 0.00 0.00 3.51
426 430 7.500141 ACACTCAATATATGCACATACACTCA 58.500 34.615 0.00 0.00 0.00 3.41
436 440 5.993441 CAGACATGGACACTCAATATATGCA 59.007 40.000 0.00 0.00 0.00 3.96
438 442 5.993441 TGCAGACATGGACACTCAATATATG 59.007 40.000 0.00 0.00 0.00 1.78
440 444 5.359756 GTGCAGACATGGACACTCAATATA 58.640 41.667 0.00 0.00 46.28 0.86
443 447 2.430465 GTGCAGACATGGACACTCAAT 58.570 47.619 0.00 0.00 46.28 2.57
444 448 1.882912 GTGCAGACATGGACACTCAA 58.117 50.000 0.00 0.00 46.28 3.02
445 449 3.612517 GTGCAGACATGGACACTCA 57.387 52.632 0.00 0.00 46.28 3.41
451 455 3.483808 TTAACACAGTGCAGACATGGA 57.516 42.857 0.00 0.00 0.00 3.41
453 457 8.746922 AATAAAATTAACACAGTGCAGACATG 57.253 30.769 0.00 0.00 0.00 3.21
480 866 6.598064 CGAAGGGAGTACTTTGGATTTATGTT 59.402 38.462 0.00 0.00 0.00 2.71
481 867 6.113411 CGAAGGGAGTACTTTGGATTTATGT 58.887 40.000 0.00 0.00 0.00 2.29
497 891 5.446875 GCGGAGTAAATAAAAACGAAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
498 892 4.392754 GCGGAGTAAATAAAAACGAAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
499 893 4.437794 GGCGGAGTAAATAAAAACGAAGGG 60.438 45.833 0.00 0.00 0.00 3.95
500 894 4.154556 TGGCGGAGTAAATAAAAACGAAGG 59.845 41.667 0.00 0.00 0.00 3.46
501 895 5.285798 TGGCGGAGTAAATAAAAACGAAG 57.714 39.130 0.00 0.00 0.00 3.79
502 896 5.883503 ATGGCGGAGTAAATAAAAACGAA 57.116 34.783 0.00 0.00 0.00 3.85
503 897 6.370994 TGTTATGGCGGAGTAAATAAAAACGA 59.629 34.615 0.00 0.00 0.00 3.85
504 898 6.544622 TGTTATGGCGGAGTAAATAAAAACG 58.455 36.000 0.00 0.00 0.00 3.60
505 899 8.745464 TTTGTTATGGCGGAGTAAATAAAAAC 57.255 30.769 0.00 0.00 0.00 2.43
506 900 9.575783 GATTTGTTATGGCGGAGTAAATAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
507 901 8.192110 GGATTTGTTATGGCGGAGTAAATAAAA 58.808 33.333 0.00 0.00 0.00 1.52
508 902 7.339721 TGGATTTGTTATGGCGGAGTAAATAAA 59.660 33.333 0.00 0.00 0.00 1.40
509 903 6.829298 TGGATTTGTTATGGCGGAGTAAATAA 59.171 34.615 0.00 0.00 0.00 1.40
510 904 6.358178 TGGATTTGTTATGGCGGAGTAAATA 58.642 36.000 0.00 0.00 0.00 1.40
511 905 5.197451 TGGATTTGTTATGGCGGAGTAAAT 58.803 37.500 0.00 0.00 0.00 1.40
512 906 4.590918 TGGATTTGTTATGGCGGAGTAAA 58.409 39.130 0.00 0.00 0.00 2.01
513 907 4.223556 TGGATTTGTTATGGCGGAGTAA 57.776 40.909 0.00 0.00 0.00 2.24
514 908 3.916359 TGGATTTGTTATGGCGGAGTA 57.084 42.857 0.00 0.00 0.00 2.59
515 909 2.799126 TGGATTTGTTATGGCGGAGT 57.201 45.000 0.00 0.00 0.00 3.85
516 910 3.443681 ACTTTGGATTTGTTATGGCGGAG 59.556 43.478 0.00 0.00 0.00 4.63
517 911 3.426615 ACTTTGGATTTGTTATGGCGGA 58.573 40.909 0.00 0.00 0.00 5.54
518 912 3.866883 ACTTTGGATTTGTTATGGCGG 57.133 42.857 0.00 0.00 0.00 6.13
519 913 8.918961 TTATAAACTTTGGATTTGTTATGGCG 57.081 30.769 0.00 0.00 0.00 5.69
584 978 9.685276 AGATTCATTATCAAATGTACTTCCACA 57.315 29.630 0.00 0.00 42.66 4.17
611 1005 9.421806 CATGTACAATAACAAATCAACACCATT 57.578 29.630 0.00 0.00 32.02 3.16
612 1006 8.584157 ACATGTACAATAACAAATCAACACCAT 58.416 29.630 0.00 0.00 32.02 3.55
613 1007 7.946207 ACATGTACAATAACAAATCAACACCA 58.054 30.769 0.00 0.00 32.02 4.17
614 1008 8.810652 AACATGTACAATAACAAATCAACACC 57.189 30.769 0.00 0.00 32.02 4.16
661 1055 8.920665 CGCATATTAATTTTGGTCAAAGTCAAA 58.079 29.630 0.00 0.00 0.00 2.69
662 1056 7.543868 CCGCATATTAATTTTGGTCAAAGTCAA 59.456 33.333 0.00 0.00 0.00 3.18
663 1057 7.032580 CCGCATATTAATTTTGGTCAAAGTCA 58.967 34.615 0.00 0.00 0.00 3.41
664 1058 7.254852 TCCGCATATTAATTTTGGTCAAAGTC 58.745 34.615 0.00 0.00 0.00 3.01
665 1059 7.093945 ACTCCGCATATTAATTTTGGTCAAAGT 60.094 33.333 0.00 0.00 0.00 2.66
666 1060 7.257722 ACTCCGCATATTAATTTTGGTCAAAG 58.742 34.615 0.00 0.00 0.00 2.77
667 1061 7.164230 ACTCCGCATATTAATTTTGGTCAAA 57.836 32.000 0.00 0.00 0.00 2.69
668 1062 6.767524 ACTCCGCATATTAATTTTGGTCAA 57.232 33.333 0.00 0.00 0.00 3.18
669 1063 7.867305 TTACTCCGCATATTAATTTTGGTCA 57.133 32.000 0.00 0.00 0.00 4.02
677 1071 9.887406 CCGTTTTTATTTACTCCGCATATTAAT 57.113 29.630 0.00 0.00 0.00 1.40
678 1072 9.107177 TCCGTTTTTATTTACTCCGCATATTAA 57.893 29.630 0.00 0.00 0.00 1.40
679 1073 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
680 1074 7.255001 CCTCCGTTTTTATTTACTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
681 1075 6.204108 CCTCCGTTTTTATTTACTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
682 1076 5.524646 CCTCCGTTTTTATTTACTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
683 1077 4.334481 CCTCCGTTTTTATTTACTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
684 1078 3.685756 CCTCCGTTTTTATTTACTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
685 1079 3.064408 CCCTCCGTTTTTATTTACTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
686 1080 4.506758 TCCCTCCGTTTTTATTTACTCCG 58.493 43.478 0.00 0.00 0.00 4.63
687 1081 5.494724 ACTCCCTCCGTTTTTATTTACTCC 58.505 41.667 0.00 0.00 0.00 3.85
688 1082 8.728337 AATACTCCCTCCGTTTTTATTTACTC 57.272 34.615 0.00 0.00 0.00 2.59
693 1087 8.833493 CGATTTAATACTCCCTCCGTTTTTATT 58.167 33.333 0.00 0.00 0.00 1.40
694 1088 7.041576 GCGATTTAATACTCCCTCCGTTTTTAT 60.042 37.037 0.00 0.00 0.00 1.40
695 1089 6.258507 GCGATTTAATACTCCCTCCGTTTTTA 59.741 38.462 0.00 0.00 0.00 1.52
696 1090 5.065602 GCGATTTAATACTCCCTCCGTTTTT 59.934 40.000 0.00 0.00 0.00 1.94
697 1091 4.573607 GCGATTTAATACTCCCTCCGTTTT 59.426 41.667 0.00 0.00 0.00 2.43
698 1092 4.124970 GCGATTTAATACTCCCTCCGTTT 58.875 43.478 0.00 0.00 0.00 3.60
699 1093 3.493873 GGCGATTTAATACTCCCTCCGTT 60.494 47.826 0.00 0.00 0.00 4.44
700 1094 2.036862 GGCGATTTAATACTCCCTCCGT 59.963 50.000 0.00 0.00 0.00 4.69
701 1095 2.299297 AGGCGATTTAATACTCCCTCCG 59.701 50.000 0.00 0.00 0.00 4.63
702 1096 4.771054 TCTAGGCGATTTAATACTCCCTCC 59.229 45.833 0.00 0.00 0.00 4.30
703 1097 5.711036 TCTCTAGGCGATTTAATACTCCCTC 59.289 44.000 0.00 0.00 0.00 4.30
704 1098 5.642165 TCTCTAGGCGATTTAATACTCCCT 58.358 41.667 0.00 0.00 0.00 4.20
705 1099 5.979288 TCTCTAGGCGATTTAATACTCCC 57.021 43.478 0.00 0.00 0.00 4.30
706 1100 7.399245 AGATCTCTAGGCGATTTAATACTCC 57.601 40.000 0.00 0.00 0.00 3.85
707 1101 9.699703 AAAAGATCTCTAGGCGATTTAATACTC 57.300 33.333 0.00 0.00 0.00 2.59
754 1148 2.889678 TCCATCAGATCAGATCTCACGG 59.110 50.000 10.25 10.43 37.58 4.94
769 1163 2.552315 GCCGTTCTTTTTGTCTCCATCA 59.448 45.455 0.00 0.00 0.00 3.07
847 1241 4.676986 GCAAGTATACAGGTGTGACGATGA 60.677 45.833 5.50 0.00 0.00 2.92
884 1278 2.632028 CCTGACCCGATCTGATCTTGAT 59.368 50.000 15.16 0.00 0.00 2.57
903 1299 2.600731 CTCTCCTCTCCTCGCCCT 59.399 66.667 0.00 0.00 0.00 5.19
949 1345 3.108376 GTTGGTAGGGAGAGGAACAGAT 58.892 50.000 0.00 0.00 0.00 2.90
1001 1397 1.630244 CGCGCTTCTTTCCTGTGGAG 61.630 60.000 5.56 0.00 31.21 3.86
1035 1431 0.171455 ACCGACGACATCTTGCTCTC 59.829 55.000 0.00 0.00 0.00 3.20
1179 1578 7.063898 TCTGATGAAATCTCAGCTTTTCGTAAG 59.936 37.037 8.20 8.20 45.81 2.34
1278 1858 1.891919 GGAACTCGCAGTGCAACCA 60.892 57.895 16.83 0.00 37.80 3.67
1282 1862 2.661537 CACGGAACTCGCAGTGCA 60.662 61.111 16.83 1.35 43.89 4.57
1285 1865 4.681978 GGGCACGGAACTCGCAGT 62.682 66.667 0.00 0.00 43.89 4.40
1349 2006 0.863144 ACGAAACCGGTCAAATCGTG 59.137 50.000 26.43 8.73 44.20 4.35
1448 2105 1.675714 GGCACGATGGACTTCATGACA 60.676 52.381 0.00 0.00 35.97 3.58
1668 2325 2.907910 AACAAATAGAAGCTGCTGCG 57.092 45.000 3.74 0.00 45.42 5.18
1671 2331 6.901081 AAGGTTAAACAAATAGAAGCTGCT 57.099 33.333 0.00 0.00 30.47 4.24
1674 2334 7.444487 AGACGAAAGGTTAAACAAATAGAAGCT 59.556 33.333 0.00 0.00 0.00 3.74
1679 2339 9.166126 GTCAAAGACGAAAGGTTAAACAAATAG 57.834 33.333 0.00 0.00 0.00 1.73
1689 2349 6.263344 GCTTAAAAGTCAAAGACGAAAGGTT 58.737 36.000 0.00 0.00 37.67 3.50
1885 2553 5.631026 TGACAGAAATAATTCTCGCTTTGC 58.369 37.500 0.00 0.00 44.11 3.68
1929 2597 6.037098 ACGATTCTAGGAGATTTCGTTCTTG 58.963 40.000 8.39 0.00 39.08 3.02
1952 2620 7.220030 ACAGAAGGATCCACAATATCATGTAC 58.780 38.462 15.82 0.00 30.84 2.90
1997 2665 1.145325 AGGACGGAGGGAGTACCATAG 59.855 57.143 0.00 0.00 43.89 2.23
1998 2666 1.229131 AGGACGGAGGGAGTACCATA 58.771 55.000 0.00 0.00 43.89 2.74
1999 2667 1.229131 TAGGACGGAGGGAGTACCAT 58.771 55.000 0.00 0.00 43.89 3.55
2000 2668 1.002069 TTAGGACGGAGGGAGTACCA 58.998 55.000 0.00 0.00 43.89 3.25
2001 2669 2.149973 TTTAGGACGGAGGGAGTACC 57.850 55.000 0.00 0.00 40.67 3.34
2002 2670 5.362143 ACTTATTTTAGGACGGAGGGAGTAC 59.638 44.000 0.00 0.00 0.00 2.73
2003 2671 5.361857 CACTTATTTTAGGACGGAGGGAGTA 59.638 44.000 0.00 0.00 0.00 2.59
2004 2672 4.161754 CACTTATTTTAGGACGGAGGGAGT 59.838 45.833 0.00 0.00 0.00 3.85
2005 2673 4.161754 ACACTTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2006 2674 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2007 2675 4.161754 AGACACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2008 2676 5.105473 TGAGACACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 0.00 4.30
2009 2677 5.962433 TGAGACACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 0.00 4.63
2010 2678 5.988310 TGAGACACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 0.00 4.69
2011 2679 6.164176 AGTTGAGACACTTATTTTAGGACGG 58.836 40.000 0.00 0.00 0.00 4.79
2012 2680 7.653767 AAGTTGAGACACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
2053 2721 9.802039 AGCTTAGTACAGATTTATACTAGAGCT 57.198 33.333 15.03 15.03 39.80 4.09
2062 2730 8.754080 AGTGTCTTGAGCTTAGTACAGATTTAT 58.246 33.333 0.00 0.00 0.00 1.40
2063 2731 8.123639 AGTGTCTTGAGCTTAGTACAGATTTA 57.876 34.615 0.00 0.00 0.00 1.40
2064 2732 6.998802 AGTGTCTTGAGCTTAGTACAGATTT 58.001 36.000 0.00 0.00 0.00 2.17
2065 2733 6.597832 AGTGTCTTGAGCTTAGTACAGATT 57.402 37.500 0.00 0.00 0.00 2.40
2066 2734 6.597832 AAGTGTCTTGAGCTTAGTACAGAT 57.402 37.500 0.00 0.00 0.00 2.90
2067 2735 7.704578 ATAAGTGTCTTGAGCTTAGTACAGA 57.295 36.000 0.00 0.00 0.00 3.41
2068 2736 8.764524 AAATAAGTGTCTTGAGCTTAGTACAG 57.235 34.615 0.00 0.00 0.00 2.74
2069 2737 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
2070 2738 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
2071 2739 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
2072 2740 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
2073 2741 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
2074 2742 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2075 2743 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2076 2744 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2077 2745 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2078 2746 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2079 2747 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2080 2748 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2081 2749 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2082 2750 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2083 2751 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2084 2752 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2085 2753 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2086 2754 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2087 2755 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2088 2756 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2089 2757 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2090 2758 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2091 2759 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2092 2760 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2093 2761 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2094 2762 2.852714 TTATTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2095 2763 5.082425 TCTATTTATTACTCCCTCCGTCCC 58.918 45.833 0.00 0.00 0.00 4.46
2096 2764 5.774184 ACTCTATTTATTACTCCCTCCGTCC 59.226 44.000 0.00 0.00 0.00 4.79
2097 2765 6.489361 TGACTCTATTTATTACTCCCTCCGTC 59.511 42.308 0.00 0.00 0.00 4.79
2098 2766 6.371278 TGACTCTATTTATTACTCCCTCCGT 58.629 40.000 0.00 0.00 0.00 4.69
2099 2767 6.570764 GCTGACTCTATTTATTACTCCCTCCG 60.571 46.154 0.00 0.00 0.00 4.63
2100 2768 6.495526 AGCTGACTCTATTTATTACTCCCTCC 59.504 42.308 0.00 0.00 0.00 4.30
2101 2769 7.533289 AGCTGACTCTATTTATTACTCCCTC 57.467 40.000 0.00 0.00 0.00 4.30
2102 2770 9.030452 CATAGCTGACTCTATTTATTACTCCCT 57.970 37.037 0.00 0.00 0.00 4.20
2103 2771 8.808092 ACATAGCTGACTCTATTTATTACTCCC 58.192 37.037 0.00 0.00 0.00 4.30
2104 2772 9.632807 CACATAGCTGACTCTATTTATTACTCC 57.367 37.037 0.00 0.00 0.00 3.85
2124 2792 7.310664 ACAAGCAAGATCATTGAAACACATAG 58.689 34.615 8.52 0.00 0.00 2.23
2134 2802 6.072838 AGTCACAAGTACAAGCAAGATCATTG 60.073 38.462 0.00 0.00 0.00 2.82
2191 2859 7.920682 GGTCACTTTGTGATGTTTTCTGTATTT 59.079 33.333 3.65 0.00 44.63 1.40
2207 2875 9.185680 AGAAACTGTTAAATAAGGTCACTTTGT 57.814 29.630 0.00 0.00 38.14 2.83
2211 2879 8.974060 TGAAGAAACTGTTAAATAAGGTCACT 57.026 30.769 0.00 0.00 0.00 3.41
2292 2960 4.871513 TCAGAGGTACATAAGCGCAATAG 58.128 43.478 11.47 0.00 0.00 1.73
2308 2976 1.734465 GTTTTCCGCTCACATCAGAGG 59.266 52.381 0.00 0.00 36.15 3.69
2309 2977 2.414481 CTGTTTTCCGCTCACATCAGAG 59.586 50.000 0.00 0.00 38.68 3.35
2322 2990 1.931635 TAATGCCCCCACTGTTTTCC 58.068 50.000 0.00 0.00 0.00 3.13
2324 2992 2.970987 AGTTAATGCCCCCACTGTTTT 58.029 42.857 0.00 0.00 0.00 2.43
2328 2996 3.631250 ACATAAGTTAATGCCCCCACTG 58.369 45.455 0.00 0.00 0.00 3.66
2330 2998 6.097696 ACAATAACATAAGTTAATGCCCCCAC 59.902 38.462 5.95 0.00 42.30 4.61
2333 3001 7.494298 CCAAACAATAACATAAGTTAATGCCCC 59.506 37.037 5.95 0.00 42.30 5.80
2342 3010 7.440856 CACAAAAGGCCAAACAATAACATAAGT 59.559 33.333 5.01 0.00 0.00 2.24
2347 3015 5.091261 ACACAAAAGGCCAAACAATAACA 57.909 34.783 5.01 0.00 0.00 2.41
2360 3028 4.703897 TCAGGTCTTACAGACACAAAAGG 58.296 43.478 6.25 0.00 46.79 3.11
2365 3033 8.740123 TTAAAATTTCAGGTCTTACAGACACA 57.260 30.769 6.25 0.00 46.79 3.72
2388 3056 8.836413 GCAATACACAGCTATTCCTATTGTTTA 58.164 33.333 0.00 0.00 0.00 2.01
2391 3059 6.595682 AGCAATACACAGCTATTCCTATTGT 58.404 36.000 0.00 0.00 39.78 2.71
2392 3060 7.502120 AAGCAATACACAGCTATTCCTATTG 57.498 36.000 0.00 0.00 40.90 1.90
2393 3061 9.277783 CTTAAGCAATACACAGCTATTCCTATT 57.722 33.333 0.00 0.00 40.90 1.73
2394 3062 7.880195 CCTTAAGCAATACACAGCTATTCCTAT 59.120 37.037 0.00 0.00 40.90 2.57
2395 3063 7.217200 CCTTAAGCAATACACAGCTATTCCTA 58.783 38.462 0.00 0.00 40.90 2.94
2396 3064 6.058183 CCTTAAGCAATACACAGCTATTCCT 58.942 40.000 0.00 0.00 40.90 3.36
2397 3065 5.278022 GCCTTAAGCAATACACAGCTATTCC 60.278 44.000 0.00 0.00 40.90 3.01
2398 3066 5.752712 GCCTTAAGCAATACACAGCTATTC 58.247 41.667 0.00 0.00 40.90 1.75
2414 3082 8.496707 AAATATTGCAGGAAAAATGCCTTAAG 57.503 30.769 0.00 0.00 43.18 1.85
2420 3090 9.068008 CATTCAAAAATATTGCAGGAAAAATGC 57.932 29.630 0.00 0.00 44.11 3.56
2465 3135 9.448438 TGCTTATACAAGAACATGTACTTTCAT 57.552 29.630 0.00 0.00 38.53 2.57
2466 3136 8.840833 TGCTTATACAAGAACATGTACTTTCA 57.159 30.769 0.00 0.00 38.53 2.69
2484 3154 9.788889 ATCTCAGAATCAATTCACATGCTTATA 57.211 29.630 5.59 0.00 39.23 0.98
2570 3263 7.668525 TCGACGACATCATAGACTAACATAT 57.331 36.000 0.00 0.00 0.00 1.78
2589 3282 3.185594 TGCAAAGGAAACACTAATCGACG 59.814 43.478 0.00 0.00 0.00 5.12
2592 3285 4.749245 ACTGCAAAGGAAACACTAATCG 57.251 40.909 0.00 0.00 0.00 3.34
2637 3330 1.194218 GTGCAGCCCCCATACAAAAT 58.806 50.000 0.00 0.00 0.00 1.82
2691 3384 3.592059 CCTGCAATCAAAATCCACAAGG 58.408 45.455 0.00 0.00 0.00 3.61
2787 3480 1.264045 TGATGCCCACGATGAGACCA 61.264 55.000 0.00 0.00 0.00 4.02
3241 3937 3.456280 TGAATTGCAAGTTTGTGGCTTC 58.544 40.909 4.94 0.91 0.00 3.86
3315 4011 3.760684 GCACCAAGGATGAGAAAATGACT 59.239 43.478 0.00 0.00 0.00 3.41
3318 4014 3.508793 ACAGCACCAAGGATGAGAAAATG 59.491 43.478 0.00 0.00 0.00 2.32
3319 4015 3.771216 ACAGCACCAAGGATGAGAAAAT 58.229 40.909 0.00 0.00 0.00 1.82
3329 4025 2.076863 GCTACACTAACAGCACCAAGG 58.923 52.381 0.00 0.00 37.73 3.61
3336 4032 2.029838 AGCCATGCTACACTAACAGC 57.970 50.000 0.00 0.00 36.99 4.40
3337 4033 6.683974 AAATAAGCCATGCTACACTAACAG 57.316 37.500 0.00 0.00 38.25 3.16
3338 4034 7.461182 AAAAATAAGCCATGCTACACTAACA 57.539 32.000 0.00 0.00 38.25 2.41
3393 4090 6.261826 GGAAGGAGTAGCGTATTAGAACAGTA 59.738 42.308 0.00 0.00 0.00 2.74
3415 4112 7.335627 AGACCATCTTATAATTGTGAACGGAA 58.664 34.615 0.00 0.00 0.00 4.30
3437 4134 8.845227 TCAGTGATGATTAATCTGAGAGTAGAC 58.155 37.037 16.24 1.58 36.15 2.59
3455 4152 9.817365 CTTCAACTTTGTACTAAATCAGTGATG 57.183 33.333 6.34 0.00 38.24 3.07
3456 4153 9.778741 TCTTCAACTTTGTACTAAATCAGTGAT 57.221 29.630 0.00 0.00 38.24 3.06
3459 4156 7.661847 CCCTCTTCAACTTTGTACTAAATCAGT 59.338 37.037 0.00 0.00 41.62 3.41
3553 4340 9.826574 GTACTCCCATCACTGTTATAAAATGTA 57.173 33.333 0.00 0.00 0.00 2.29
3660 4451 6.615264 ATCTTGCTGTCATGATTCACATAC 57.385 37.500 0.00 0.00 37.46 2.39
3764 4557 6.097356 TCGGAACAGACAGTATATTGAACAC 58.903 40.000 1.74 0.00 0.00 3.32
3765 4558 6.275494 TCGGAACAGACAGTATATTGAACA 57.725 37.500 1.74 0.00 0.00 3.18
3784 4583 1.691976 ACAGTGAAACAGTGGATCGGA 59.308 47.619 0.00 0.00 41.43 4.55
3785 4584 2.169832 ACAGTGAAACAGTGGATCGG 57.830 50.000 0.00 0.00 41.43 4.18
3797 4608 5.188327 TGTGTTGTGTTTCAAACAGTGAA 57.812 34.783 2.26 0.00 44.74 3.18
3798 4609 4.837896 TGTGTTGTGTTTCAAACAGTGA 57.162 36.364 2.26 0.00 43.10 3.41
3799 4610 6.971756 TCATATGTGTTGTGTTTCAAACAGTG 59.028 34.615 2.26 0.00 43.10 3.66
3800 4611 7.066887 TCTCATATGTGTTGTGTTTCAAACAGT 59.933 33.333 2.26 0.00 43.10 3.55
3801 4612 7.416817 TCTCATATGTGTTGTGTTTCAAACAG 58.583 34.615 2.26 0.00 43.10 3.16
3802 4613 7.326968 TCTCATATGTGTTGTGTTTCAAACA 57.673 32.000 0.00 0.00 37.81 2.83
3803 4614 7.915397 ACTTCTCATATGTGTTGTGTTTCAAAC 59.085 33.333 1.90 0.00 37.81 2.93
3804 4615 7.995289 ACTTCTCATATGTGTTGTGTTTCAAA 58.005 30.769 1.90 0.00 37.81 2.69
3845 4656 3.515901 AGTGGAACAGATAGTGTCCCTTC 59.484 47.826 0.00 0.00 41.80 3.46
3878 4689 6.974965 AGAACAAAATTCCTCATCTGTGTTC 58.025 36.000 0.00 0.00 42.37 3.18
3910 4721 4.532521 AGCTGTACAGATAGTGTCCCTTTT 59.467 41.667 27.08 0.00 40.94 2.27
4108 4919 5.334319 CACGCATGATTGATTGTATTGTGT 58.666 37.500 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.