Multiple sequence alignment - TraesCS4B01G110200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G110200 chr4B 100.000 5165 0 0 1 5165 123498851 123504015 0.000000e+00 9539
1 TraesCS4B01G110200 chr4B 89.592 980 61 11 797 1773 578033074 578032133 0.000000e+00 1206
2 TraesCS4B01G110200 chr4D 94.528 5190 194 37 1 5165 85995256 86000380 0.000000e+00 7928
3 TraesCS4B01G110200 chr4D 91.848 4367 238 47 325 4653 87544290 87548576 0.000000e+00 5984
4 TraesCS4B01G110200 chr4D 93.510 339 22 0 4824 5162 453136325 453136663 5.970000e-139 505
5 TraesCS4B01G110200 chr4D 87.850 214 15 7 1 204 87543412 87543624 1.860000e-59 241
6 TraesCS4B01G110200 chr4D 94.845 97 2 3 231 326 87543886 87543980 1.160000e-31 148
7 TraesCS4B01G110200 chr4A 93.302 4539 205 41 325 4825 500140976 500145453 0.000000e+00 6606
8 TraesCS4B01G110200 chr4A 87.805 246 20 6 1 237 500140336 500140580 3.940000e-71 279
9 TraesCS4B01G110200 chr4A 94.792 96 3 2 231 326 500140834 500140927 1.160000e-31 148
10 TraesCS4B01G110200 chr7D 95.614 342 15 0 4824 5165 126645858 126645517 2.720000e-152 549
11 TraesCS4B01G110200 chr6D 93.805 339 21 0 4824 5162 459279439 459279777 1.280000e-140 510
12 TraesCS4B01G110200 chr6D 92.754 345 22 1 4824 5165 338139274 338138930 3.590000e-136 496
13 TraesCS4B01G110200 chr6B 93.510 339 22 0 4824 5162 673595214 673595552 5.970000e-139 505
14 TraesCS4B01G110200 chr1D 92.982 342 24 0 4824 5165 202178950 202178609 2.780000e-137 499
15 TraesCS4B01G110200 chr1D 92.690 342 25 0 4824 5165 31276806 31276465 1.290000e-135 494
16 TraesCS4B01G110200 chr6A 92.920 339 24 0 4824 5162 259413269 259413607 1.290000e-135 494
17 TraesCS4B01G110200 chr5D 82.540 441 35 15 1334 1773 21674876 21675275 2.960000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G110200 chr4B 123498851 123504015 5164 False 9539.000000 9539 100.000000 1 5165 1 chr4B.!!$F1 5164
1 TraesCS4B01G110200 chr4B 578032133 578033074 941 True 1206.000000 1206 89.592000 797 1773 1 chr4B.!!$R1 976
2 TraesCS4B01G110200 chr4D 85995256 86000380 5124 False 7928.000000 7928 94.528000 1 5165 1 chr4D.!!$F1 5164
3 TraesCS4B01G110200 chr4D 87543412 87548576 5164 False 2124.333333 5984 91.514333 1 4653 3 chr4D.!!$F3 4652
4 TraesCS4B01G110200 chr4A 500140336 500145453 5117 False 2344.333333 6606 91.966333 1 4825 3 chr4A.!!$F1 4824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 200 1.819288 GACACTGCAGTAGCTGGACTA 59.181 52.381 21.20 0.00 43.24 2.59 F
1005 1605 1.144936 GGAGCTGGGAGGAATGACG 59.855 63.158 0.00 0.00 0.00 4.35 F
1846 2457 0.884704 GCCAGGCACGAGAAGAACAA 60.885 55.000 6.55 0.00 0.00 2.83 F
2654 3265 1.101635 CACCCTCATGGCAGCTGATG 61.102 60.000 20.43 13.56 37.83 3.07 F
3456 4067 0.743701 GCTGAGGATGCAGTGTCAGG 60.744 60.000 18.56 5.91 37.49 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 1800 0.395312 TCTTGGGTTTCACCGTCTCC 59.605 55.000 0.00 0.0 39.83 3.71 R
2584 3195 1.203038 TCTGCAAGGGCCATTTCAAGA 60.203 47.619 6.18 3.4 40.13 3.02 R
3219 3830 0.179225 CAGTGCATTCACCGTTACGC 60.179 55.000 0.00 0.0 44.16 4.42 R
3460 4071 0.598065 GTTGACTCGCCATTGCCTTT 59.402 50.000 0.00 0.0 0.00 3.11 R
4996 5633 0.248843 GCAGAGCTGGCAGAAGTAGT 59.751 55.000 20.86 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 7.040201 TGGGACATAATCAGACGTTACTATACC 60.040 40.741 0.00 0.00 0.00 2.73
81 82 4.985413 TCAGACGTTACTATACCGTTTGG 58.015 43.478 0.00 0.00 37.32 3.28
191 200 1.819288 GACACTGCAGTAGCTGGACTA 59.181 52.381 21.20 0.00 43.24 2.59
237 246 6.079424 TGGTTTTAGAAGGTTGCAATGTAC 57.921 37.500 0.59 0.00 0.00 2.90
427 1006 4.604843 ACATGCACGTGTCATATTCTTG 57.395 40.909 18.38 11.36 0.00 3.02
447 1026 6.208644 TCTTGTAGAAGATTGCAAAAACTGC 58.791 36.000 1.71 2.30 41.36 4.40
523 1102 8.945195 TGCAATATCTGATTTTGATTATCCCT 57.055 30.769 20.35 0.00 0.00 4.20
524 1103 9.370930 TGCAATATCTGATTTTGATTATCCCTT 57.629 29.630 20.35 0.00 0.00 3.95
634 1229 9.225682 TGTTTCCTATCTTTTGGTCCTAGATAT 57.774 33.333 0.00 0.00 32.21 1.63
728 1326 3.375299 GCTTGAATACTGAGGTCGCAATT 59.625 43.478 0.00 0.00 0.00 2.32
729 1327 4.142600 GCTTGAATACTGAGGTCGCAATTT 60.143 41.667 0.00 0.00 0.00 1.82
764 1362 9.398538 ACTTGTCAAAACTGTATGGTTTAGTTA 57.601 29.630 0.00 0.00 38.30 2.24
863 1462 7.509141 TGAATGTGTAGAATTTGCTTCAGAA 57.491 32.000 0.00 0.00 36.24 3.02
864 1463 7.939782 TGAATGTGTAGAATTTGCTTCAGAAA 58.060 30.769 0.00 0.00 36.24 2.52
910 1509 7.477144 TCAGATAATTGCTGGTTATGTAACG 57.523 36.000 9.42 0.00 37.07 3.18
971 1571 4.826274 ACTATTGCCTAGCTCAACTTCA 57.174 40.909 0.00 0.00 0.00 3.02
977 1577 3.565482 TGCCTAGCTCAACTTCACAAAAG 59.435 43.478 0.00 0.00 0.00 2.27
1005 1605 1.144936 GGAGCTGGGAGGAATGACG 59.855 63.158 0.00 0.00 0.00 4.35
1006 1606 1.330655 GGAGCTGGGAGGAATGACGA 61.331 60.000 0.00 0.00 0.00 4.20
1129 1732 3.763360 TCACCTTTGGCAAATACAGGATG 59.237 43.478 19.82 14.11 46.00 3.51
1230 1835 3.005155 CCCAAGAAACTGAAGCAGGAAAG 59.995 47.826 0.00 0.00 35.51 2.62
1264 1869 1.006998 AGCTAACATGGGCAAATGGGA 59.993 47.619 0.00 0.00 31.46 4.37
1266 1871 2.738743 CTAACATGGGCAAATGGGACT 58.261 47.619 0.00 0.00 31.46 3.85
1337 1942 7.601886 CCTTACAAATGTAGGAGATGCTGATAG 59.398 40.741 4.44 0.00 30.14 2.08
1362 1967 5.391416 GCAGGATTCTGTGAAGAGTTTAAGC 60.391 44.000 2.16 0.00 42.78 3.09
1468 2074 6.202570 TGTTGCAGGTATTTTCTTTTTCATGC 59.797 34.615 0.00 0.00 34.10 4.06
1542 2148 7.812690 ATCACTATTGCATCTGCTGAAATTA 57.187 32.000 3.53 0.00 42.66 1.40
1543 2149 7.628769 TCACTATTGCATCTGCTGAAATTAA 57.371 32.000 3.53 0.00 42.66 1.40
1544 2150 7.700505 TCACTATTGCATCTGCTGAAATTAAG 58.299 34.615 3.53 0.00 42.66 1.85
1545 2151 7.553760 TCACTATTGCATCTGCTGAAATTAAGA 59.446 33.333 3.53 0.00 42.66 2.10
1657 2268 8.856153 TGTACTAACCAGAAATTTAGAATGCA 57.144 30.769 0.00 0.00 0.00 3.96
1846 2457 0.884704 GCCAGGCACGAGAAGAACAA 60.885 55.000 6.55 0.00 0.00 2.83
1908 2519 3.540314 ATTGGAGTCTGAGATGTCTGC 57.460 47.619 0.00 0.00 0.00 4.26
1962 2573 1.678123 GCTTGAAGCCTCTGATCTGCA 60.678 52.381 5.74 0.00 34.48 4.41
1972 2583 3.688673 CCTCTGATCTGCAGGAAAAACTC 59.311 47.826 15.13 0.81 44.98 3.01
1990 2601 2.829120 ACTCCAGGTAGCAGAGAAAGAC 59.171 50.000 16.22 0.00 0.00 3.01
2137 2748 3.791973 ATTACAAGAGTCGAGGCAGAG 57.208 47.619 0.00 0.00 0.00 3.35
2239 2850 2.027745 GGAATCTCTGACTGACAGCCAA 60.028 50.000 1.25 0.00 45.38 4.52
2539 3150 1.766496 GCCCTACAGCACCAGGTTATA 59.234 52.381 0.00 0.00 0.00 0.98
2602 3213 1.826720 GATCTTGAAATGGCCCTTGCA 59.173 47.619 0.00 0.00 40.13 4.08
2653 3264 1.226542 CACCCTCATGGCAGCTGAT 59.773 57.895 20.43 0.00 37.83 2.90
2654 3265 1.101635 CACCCTCATGGCAGCTGATG 61.102 60.000 20.43 13.56 37.83 3.07
2767 3378 3.248266 GAAGTCATTGGCATTGCAGTTC 58.752 45.455 11.39 4.55 0.00 3.01
3017 3628 3.670637 GAGGCACAGCTGCGATCCA 62.671 63.158 15.27 0.00 45.31 3.41
3088 3699 2.647299 TGAGGTGCAAAAGGGGAAGATA 59.353 45.455 0.00 0.00 0.00 1.98
3096 3707 4.096984 GCAAAAGGGGAAGATATGTCACAG 59.903 45.833 0.00 0.00 0.00 3.66
3253 3864 2.584418 CTGGAGTCTGATGCGGCG 60.584 66.667 0.51 0.51 0.00 6.46
3378 3989 0.980423 AAGCTCCAGGAGAAGGTGTC 59.020 55.000 21.89 0.00 0.00 3.67
3388 3999 0.962489 AGAAGGTGTCGTCACTGGAG 59.038 55.000 12.42 0.00 43.41 3.86
3439 4050 2.619074 GGTAGAATTCACTGCCAAGGCT 60.619 50.000 12.96 0.00 41.23 4.58
3454 4065 1.196766 AGGCTGAGGATGCAGTGTCA 61.197 55.000 0.00 0.00 38.17 3.58
3456 4067 0.743701 GCTGAGGATGCAGTGTCAGG 60.744 60.000 18.56 5.91 37.49 3.86
3460 4071 0.252421 AGGATGCAGTGTCAGGGAGA 60.252 55.000 0.00 0.00 0.00 3.71
3471 4082 0.323725 TCAGGGAGAAAGGCAATGGC 60.324 55.000 0.00 0.00 40.13 4.40
3487 4098 2.613026 TGGCGAGTCAACTTGAAGAA 57.387 45.000 0.00 0.00 0.00 2.52
3505 4116 1.806542 GAAGCAAATCTGGAACTCGCA 59.193 47.619 0.00 0.00 0.00 5.10
3683 4294 3.882888 CCTGAAGTTCAAGCAGGTAAACA 59.117 43.478 7.06 0.00 43.25 2.83
3699 4310 7.591426 GCAGGTAAACATTTTAGAAGTTGACAG 59.409 37.037 0.00 0.00 29.87 3.51
3744 4363 2.296752 GGTACTTGCTACTAGCCTAGGC 59.703 54.545 27.19 27.19 41.51 3.93
3770 4389 1.699634 GCACCCCTCTCAAGGCATATA 59.300 52.381 0.00 0.00 41.85 0.86
3771 4390 2.307098 GCACCCCTCTCAAGGCATATAT 59.693 50.000 0.00 0.00 41.85 0.86
3794 4413 6.187727 TGGTCTAATCACTCCTGAAACTTT 57.812 37.500 0.00 0.00 0.00 2.66
3814 4433 9.856162 AAACTTTAGAAGTCCCTGTATAACAAA 57.144 29.630 0.00 0.00 41.91 2.83
3843 4462 3.893326 TCATCTTCATCGCAGGAGAAA 57.107 42.857 0.00 0.00 0.00 2.52
4400 5025 4.262164 CCCAGGACAATCTCAAAACAAAGG 60.262 45.833 0.00 0.00 0.00 3.11
4632 5267 4.870426 ACATATGATATCGATGGGAAACGC 59.130 41.667 10.38 0.00 0.00 4.84
4797 5434 3.542712 ATGCAGCTGAAAGTTTACACG 57.457 42.857 20.43 0.00 35.30 4.49
4833 5470 3.764237 TCCAAAAGTTCTACTCCGCTT 57.236 42.857 0.00 0.00 0.00 4.68
4888 5525 1.789576 GCACCCTTCCCCTCCAAGAA 61.790 60.000 0.00 0.00 0.00 2.52
4928 5565 2.290577 ACCTGGGAAGCTCAAGATGTTC 60.291 50.000 0.00 0.00 0.00 3.18
4996 5633 2.975799 GCGTGGCGGGAAGAACAA 60.976 61.111 0.00 0.00 0.00 2.83
5050 5687 4.290942 GAGTCCTCCTCCCATCTTTTCTA 58.709 47.826 0.00 0.00 33.79 2.10
5061 5698 3.433598 CCATCTTTTCTAGGAATGCCCGA 60.434 47.826 0.00 0.00 40.87 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.132521 CAAAGTAAAGCTGAATGTTCCATAAAG 57.867 33.333 0.00 0.00 0.00 1.85
30 31 3.434453 CCCACCAGAAACAGGTCAAAGTA 60.434 47.826 0.00 0.00 37.23 2.24
81 82 5.684184 GTCCGGTTTGTAAGAATGTTTTCAC 59.316 40.000 0.00 0.00 34.08 3.18
191 200 6.319658 CCATATAAACAGGAGCACTCAAACAT 59.680 38.462 0.00 0.00 0.00 2.71
237 246 7.994425 TGAGATAGAGGAAGCAGATAGTAAG 57.006 40.000 0.00 0.00 0.00 2.34
447 1026 5.660864 TCCCCATTTAAAAATAGAAGGCCTG 59.339 40.000 5.69 0.00 0.00 4.85
519 1098 6.012337 TGCCTGATACAATAATCAAAGGGA 57.988 37.500 0.00 0.00 35.51 4.20
520 1099 5.829924 ACTGCCTGATACAATAATCAAAGGG 59.170 40.000 0.00 0.00 35.51 3.95
521 1100 6.543465 TCACTGCCTGATACAATAATCAAAGG 59.457 38.462 0.00 0.00 35.51 3.11
522 1101 7.558161 TCACTGCCTGATACAATAATCAAAG 57.442 36.000 0.00 0.00 35.51 2.77
599 1194 8.536175 ACCAAAAGATAGGAAACAAAAACTTCA 58.464 29.630 0.00 0.00 0.00 3.02
764 1362 9.173021 TCATTGATATAGTCATGGAAACGTTTT 57.827 29.630 15.89 0.00 36.54 2.43
773 1371 7.010830 CGGCATAAGTCATTGATATAGTCATGG 59.989 40.741 0.00 0.00 36.54 3.66
887 1486 6.293407 CCCGTTACATAACCAGCAATTATCTG 60.293 42.308 0.00 1.09 32.69 2.90
910 1509 2.489722 GTGGAAATCAAGCTTGAGACCC 59.510 50.000 31.14 27.61 41.08 4.46
971 1571 0.695347 CTCCCAGCTCCTCCTTTTGT 59.305 55.000 0.00 0.00 0.00 2.83
1005 1605 7.117523 GCATCATCTAATCACTGTACCAGATTC 59.882 40.741 7.53 0.00 35.18 2.52
1006 1606 6.933521 GCATCATCTAATCACTGTACCAGATT 59.066 38.462 0.00 8.83 35.18 2.40
1096 1699 2.799562 GCCAAAGGTGAACAAAGTGAGC 60.800 50.000 0.00 0.00 0.00 4.26
1129 1732 2.689983 CACCAATGGAGATAGGTTTGGC 59.310 50.000 6.16 0.00 40.37 4.52
1195 1800 0.395312 TCTTGGGTTTCACCGTCTCC 59.605 55.000 0.00 0.00 39.83 3.71
1230 1835 6.459298 CCCATGTTAGCTTCTCATTCAATGAC 60.459 42.308 0.00 0.00 35.06 3.06
1264 1869 2.746472 GCTGCGGGGAAGAATCATTAGT 60.746 50.000 0.00 0.00 0.00 2.24
1266 1871 1.211703 TGCTGCGGGGAAGAATCATTA 59.788 47.619 0.00 0.00 0.00 1.90
1302 1907 1.982958 ACATTTGTAAGGACCTCGGGT 59.017 47.619 0.00 0.00 39.44 5.28
1305 1910 4.401519 TCTCCTACATTTGTAAGGACCTCG 59.598 45.833 0.00 0.00 0.00 4.63
1337 1942 2.777832 ACTCTTCACAGAATCCTGCC 57.222 50.000 0.00 0.00 44.16 4.85
1524 2130 7.833786 TCTTTCTTAATTTCAGCAGATGCAAT 58.166 30.769 7.68 0.00 45.16 3.56
1846 2457 1.339151 GCACCACGGATTTTCTCCTCT 60.339 52.381 0.00 0.00 42.47 3.69
1863 2474 1.807142 GGGACTTCTTAGCAACTGCAC 59.193 52.381 4.22 0.00 45.16 4.57
1908 2519 1.860950 CCACGATATTGTTCTGGAGCG 59.139 52.381 0.00 0.00 0.00 5.03
1962 2573 2.979678 TCTGCTACCTGGAGTTTTTCCT 59.020 45.455 0.00 0.00 46.92 3.36
1972 2583 3.244033 CAGTCTTTCTCTGCTACCTGG 57.756 52.381 0.00 0.00 0.00 4.45
1990 2601 3.181477 ACTCGATCTTGAGATCCTTGCAG 60.181 47.826 13.80 6.33 46.16 4.41
2239 2850 3.199508 GCATATGCTCCCCACTATCAGAT 59.800 47.826 20.64 0.00 38.21 2.90
2481 3092 3.230134 GAGATATCTCTGGTCACAGCCT 58.770 50.000 23.06 0.00 44.54 4.58
2539 3150 4.405116 TTCAACCTTTGCTTGCAAATCT 57.595 36.364 19.16 6.54 0.00 2.40
2584 3195 1.203038 TCTGCAAGGGCCATTTCAAGA 60.203 47.619 6.18 3.40 40.13 3.02
2602 3213 3.517100 TGTCAAGCTGATTTCTAGCCTCT 59.483 43.478 0.00 0.00 42.07 3.69
2638 3249 2.194212 GCCATCAGCTGCCATGAGG 61.194 63.158 15.19 8.70 38.99 3.86
2653 3264 1.529010 CAGGTCAACCAGCTTGCCA 60.529 57.895 1.33 0.00 38.89 4.92
2654 3265 2.924105 GCAGGTCAACCAGCTTGCC 61.924 63.158 9.13 0.00 44.12 4.52
2689 3300 1.266718 GCATCTTTGGACTCGTTTGCA 59.733 47.619 0.00 0.00 0.00 4.08
2718 3329 3.935203 ACCATCTAATCGTTCAGCTTGTG 59.065 43.478 0.00 0.00 0.00 3.33
2728 3339 4.282496 ACTTCCTCTCACCATCTAATCGT 58.718 43.478 0.00 0.00 0.00 3.73
2731 3342 6.409005 CCAATGACTTCCTCTCACCATCTAAT 60.409 42.308 0.00 0.00 0.00 1.73
2767 3378 4.212004 TCAACTTCTGCTGACTTTGATTCG 59.788 41.667 10.41 0.00 0.00 3.34
2907 3518 6.126681 TGCATCAATCTTCTCTTCCAAGGATA 60.127 38.462 0.00 0.00 0.00 2.59
2965 3576 2.221906 CTGCCTTTGCCATGTCTGCC 62.222 60.000 0.00 0.00 36.33 4.85
3017 3628 3.197549 AGTTGCCCAATTTCTGTGTTTGT 59.802 39.130 0.00 0.00 0.00 2.83
3088 3699 1.066286 GCCTCAAGCTCTCTGTGACAT 60.066 52.381 0.00 0.00 38.99 3.06
3096 3707 3.866651 TCTATTTGTGCCTCAAGCTCTC 58.133 45.455 0.00 0.00 44.23 3.20
3219 3830 0.179225 CAGTGCATTCACCGTTACGC 60.179 55.000 0.00 0.00 44.16 4.42
3253 3864 4.589374 TCCGAAGAATATTCCCTCTCCTTC 59.411 45.833 11.92 6.57 0.00 3.46
3394 4005 5.803738 AGCAACACACTCTGCTCTTTAAGC 61.804 45.833 0.00 0.00 45.79 3.09
3439 4050 0.545071 TCCCTGACACTGCATCCTCA 60.545 55.000 0.00 0.00 0.00 3.86
3454 4065 1.379044 CGCCATTGCCTTTCTCCCT 60.379 57.895 0.00 0.00 0.00 4.20
3456 4067 0.678048 ACTCGCCATTGCCTTTCTCC 60.678 55.000 0.00 0.00 0.00 3.71
3460 4071 0.598065 GTTGACTCGCCATTGCCTTT 59.402 50.000 0.00 0.00 0.00 3.11
3471 4082 4.536364 TTTGCTTCTTCAAGTTGACTCG 57.464 40.909 4.68 0.00 31.45 4.18
3487 4098 1.896220 TTGCGAGTTCCAGATTTGCT 58.104 45.000 0.00 0.00 0.00 3.91
3505 4116 3.763897 AGCTCACCTTGTTTGTCAGTTTT 59.236 39.130 0.00 0.00 0.00 2.43
3652 4263 3.438434 GCTTGAACTTCAGGTCTCCATTC 59.562 47.826 3.11 0.00 0.00 2.67
3683 4294 5.567423 GCCCAATGCTGTCAACTTCTAAAAT 60.567 40.000 0.00 0.00 36.87 1.82
3699 4310 2.944349 CCATGTTATTTTGGCCCAATGC 59.056 45.455 0.00 0.00 40.16 3.56
3744 4363 1.484240 CCTTGAGAGGGGTGCTTAGAG 59.516 57.143 0.00 0.00 39.55 2.43
3770 4389 6.380079 AAGTTTCAGGAGTGATTAGACCAT 57.620 37.500 0.00 0.00 30.85 3.55
3771 4390 5.825593 AAGTTTCAGGAGTGATTAGACCA 57.174 39.130 0.00 0.00 30.85 4.02
3814 4433 6.049790 CCTGCGATGAAGATGATGATGATAT 58.950 40.000 0.00 0.00 0.00 1.63
3815 4434 5.186409 TCCTGCGATGAAGATGATGATGATA 59.814 40.000 0.00 0.00 0.00 2.15
3816 4435 4.020485 TCCTGCGATGAAGATGATGATGAT 60.020 41.667 0.00 0.00 0.00 2.45
4632 5267 7.741027 ATTTGTGGAATGTATCTCATGCTAG 57.259 36.000 0.00 0.00 36.81 3.42
4928 5565 0.387202 CGAGGTGTAGCATCCAGAGG 59.613 60.000 0.00 0.00 0.00 3.69
4986 5623 3.075148 GGCAGAAGTAGTTGTTCTTCCC 58.925 50.000 0.00 0.00 40.34 3.97
4989 5626 3.142174 GCTGGCAGAAGTAGTTGTTCTT 58.858 45.455 20.86 0.00 31.64 2.52
4996 5633 0.248843 GCAGAGCTGGCAGAAGTAGT 59.751 55.000 20.86 0.00 0.00 2.73
5042 5679 3.492656 CGATCGGGCATTCCTAGAAAAGA 60.493 47.826 7.38 0.00 0.00 2.52
5050 5687 0.687354 AATAGCGATCGGGCATTCCT 59.313 50.000 18.30 5.82 34.64 3.36
5061 5698 0.394565 GTCCAGGCCTGAATAGCGAT 59.605 55.000 34.91 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.