Multiple sequence alignment - TraesCS4B01G107800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G107800 chr4B 100.000 5976 0 0 1 5976 117767448 117773423 0.000000e+00 11036.0
1 TraesCS4B01G107800 chr4B 90.819 708 50 5 2 696 323776425 323777130 0.000000e+00 933.0
2 TraesCS4B01G107800 chr4D 93.962 4107 171 35 1909 5976 83135281 83139349 0.000000e+00 6139.0
3 TraesCS4B01G107800 chr4D 87.728 986 45 30 699 1665 83133808 83134736 0.000000e+00 1081.0
4 TraesCS4B01G107800 chr4D 95.327 107 5 0 1751 1857 83135173 83135279 2.860000e-38 171.0
5 TraesCS4B01G107800 chr4A 95.326 3038 94 22 2401 5426 495084346 495087347 0.000000e+00 4780.0
6 TraesCS4B01G107800 chr4A 87.475 1006 56 26 697 1682 495077780 495078735 0.000000e+00 1096.0
7 TraesCS4B01G107800 chr4A 92.578 512 31 3 1752 2260 495078764 495079271 0.000000e+00 728.0
8 TraesCS4B01G107800 chr4A 84.229 279 23 10 5693 5960 495100626 495100894 9.940000e-63 252.0
9 TraesCS4B01G107800 chr4A 91.429 70 5 1 626 694 517622710 517622779 1.770000e-15 95.3
10 TraesCS4B01G107800 chr5A 89.670 697 58 5 1 685 419694181 419694875 0.000000e+00 876.0
11 TraesCS4B01G107800 chr5A 86.272 692 73 8 25 696 456633654 456632965 0.000000e+00 732.0
12 TraesCS4B01G107800 chr7D 90.390 666 45 9 45 696 156900256 156900916 0.000000e+00 857.0
13 TraesCS4B01G107800 chr7D 87.594 532 56 3 21 548 467037823 467038348 5.120000e-170 608.0
14 TraesCS4B01G107800 chr7D 94.444 72 3 1 626 696 484680148 484680077 6.330000e-20 110.0
15 TraesCS4B01G107800 chr6D 86.714 700 72 7 16 696 458772512 458771815 0.000000e+00 758.0
16 TraesCS4B01G107800 chr2D 85.714 700 81 12 12 696 373432010 373431315 0.000000e+00 721.0
17 TraesCS4B01G107800 chr1B 83.051 708 96 9 12 696 140014404 140015110 6.580000e-174 621.0
18 TraesCS4B01G107800 chr2B 84.468 573 73 7 37 595 155080717 155080147 8.750000e-153 551.0
19 TraesCS4B01G107800 chr5B 90.936 342 25 3 1 338 375191869 375192208 7.060000e-124 455.0
20 TraesCS4B01G107800 chr3B 86.494 348 42 2 1 344 248743408 248743754 1.570000e-100 377.0
21 TraesCS4B01G107800 chr3B 85.352 355 46 4 1 350 560068251 560067898 4.400000e-96 363.0
22 TraesCS4B01G107800 chr7B 85.915 355 44 4 1 350 453674963 453675316 2.030000e-99 374.0
23 TraesCS4B01G107800 chrUn 93.056 72 4 1 626 696 89072180 89072109 2.950000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G107800 chr4B 117767448 117773423 5975 False 11036.000000 11036 100.0000 1 5976 1 chr4B.!!$F1 5975
1 TraesCS4B01G107800 chr4B 323776425 323777130 705 False 933.000000 933 90.8190 2 696 1 chr4B.!!$F2 694
2 TraesCS4B01G107800 chr4D 83133808 83139349 5541 False 2463.666667 6139 92.3390 699 5976 3 chr4D.!!$F1 5277
3 TraesCS4B01G107800 chr4A 495084346 495087347 3001 False 4780.000000 4780 95.3260 2401 5426 1 chr4A.!!$F1 3025
4 TraesCS4B01G107800 chr4A 495077780 495079271 1491 False 912.000000 1096 90.0265 697 2260 2 chr4A.!!$F4 1563
5 TraesCS4B01G107800 chr5A 419694181 419694875 694 False 876.000000 876 89.6700 1 685 1 chr5A.!!$F1 684
6 TraesCS4B01G107800 chr5A 456632965 456633654 689 True 732.000000 732 86.2720 25 696 1 chr5A.!!$R1 671
7 TraesCS4B01G107800 chr7D 156900256 156900916 660 False 857.000000 857 90.3900 45 696 1 chr7D.!!$F1 651
8 TraesCS4B01G107800 chr7D 467037823 467038348 525 False 608.000000 608 87.5940 21 548 1 chr7D.!!$F2 527
9 TraesCS4B01G107800 chr6D 458771815 458772512 697 True 758.000000 758 86.7140 16 696 1 chr6D.!!$R1 680
10 TraesCS4B01G107800 chr2D 373431315 373432010 695 True 721.000000 721 85.7140 12 696 1 chr2D.!!$R1 684
11 TraesCS4B01G107800 chr1B 140014404 140015110 706 False 621.000000 621 83.0510 12 696 1 chr1B.!!$F1 684
12 TraesCS4B01G107800 chr2B 155080147 155080717 570 True 551.000000 551 84.4680 37 595 1 chr2B.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 838 0.178068 TATCTCTTGCGGAACTGCCC 59.822 55.0 3.11 0.0 0.00 5.36 F
1008 1074 0.025001 GTCAAACGCCGATGACGATG 59.975 55.0 10.83 0.0 42.66 3.84 F
1575 1653 0.107703 GGATGGATGTTGTCAGCGGA 60.108 55.0 0.00 0.0 0.00 5.54 F
2180 2635 0.392193 CTCGAAATCCTGTGCCTGCT 60.392 55.0 0.00 0.0 0.00 4.24 F
2399 2855 0.877071 CCGCACTGAGCATTCAACTT 59.123 50.0 0.00 0.0 46.13 2.66 F
2609 3065 1.021202 TGCGTGTTTGAACTTCAGGG 58.979 50.0 0.00 0.0 0.00 4.45 F
2610 3066 1.021968 GCGTGTTTGAACTTCAGGGT 58.978 50.0 0.00 0.0 0.00 4.34 F
3272 3731 1.059913 AGACTACTGCAGGCTGGTTT 58.940 50.0 19.93 0.0 43.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 1782 0.331278 AGTGCCGAATCAATTCCCCA 59.669 50.000 0.00 0.00 33.28 4.96 R
1872 2324 0.755698 TACCTGTCCATCTCCCGAGC 60.756 60.000 0.00 0.00 0.00 5.03 R
3311 3770 0.657312 TTCAAGACAGTTGCGCACAG 59.343 50.000 11.12 5.31 0.00 3.66 R
4140 4602 0.394565 GCAAGATGGACGGCCTAGAT 59.605 55.000 9.82 0.00 34.31 1.98 R
4147 4609 2.028420 TGATTGAGCAAGATGGACGG 57.972 50.000 0.00 0.00 0.00 4.79 R
4556 5019 2.927871 GCCGTGATGCTTTGCAGAAATT 60.928 45.455 0.00 0.00 43.65 1.82 R
4625 5088 0.391130 CGATTTGCTTCCCAGACGGA 60.391 55.000 0.00 0.00 39.68 4.69 R
4984 5447 0.035152 TGCCAACCTATGCTCACTGG 60.035 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.889170 TTGGTTGCCATAGGTGCTAA 57.111 45.000 0.00 0.00 31.53 3.09
60 61 6.248433 ACATATTGAGGTGTTTGGTGATTCT 58.752 36.000 0.00 0.00 0.00 2.40
308 322 2.200337 GGCCGAACAAAAGCCCACT 61.200 57.895 0.00 0.00 41.00 4.00
386 400 2.693591 CTGTAAGATCCTAGCAACGGGA 59.306 50.000 0.00 0.00 34.07 5.14
442 456 9.887629 TGATGCACATTGGTATATGAAATTTTT 57.112 25.926 0.00 0.00 0.00 1.94
470 484 5.179555 GCCGGACTATTGATGGTATTCTTTC 59.820 44.000 5.05 0.00 0.00 2.62
472 486 7.667557 CCGGACTATTGATGGTATTCTTTCTA 58.332 38.462 0.00 0.00 0.00 2.10
506 520 6.959639 AACTAAGCAATGAGTTGAGGAAAA 57.040 33.333 0.00 0.00 37.53 2.29
511 525 4.834496 AGCAATGAGTTGAGGAAAATCCAA 59.166 37.500 0.00 0.00 37.53 3.53
553 567 6.670695 AGTTCAAGTAAGCAATGGGAAATT 57.329 33.333 0.00 0.00 0.00 1.82
573 622 9.686683 GGAAATTGCCCATATATAGTTATCACT 57.313 33.333 0.00 0.00 36.99 3.41
645 702 7.448161 ACAAATGAGTGTTGACATCATCCTTAA 59.552 33.333 8.47 0.00 32.59 1.85
650 707 7.284261 TGAGTGTTGACATCATCCTTAAAACAA 59.716 33.333 0.00 0.00 0.00 2.83
651 708 8.006298 AGTGTTGACATCATCCTTAAAACAAA 57.994 30.769 0.00 0.00 0.00 2.83
652 709 7.920682 AGTGTTGACATCATCCTTAAAACAAAC 59.079 33.333 0.00 0.00 0.00 2.93
653 710 7.704472 GTGTTGACATCATCCTTAAAACAAACA 59.296 33.333 0.00 0.00 0.00 2.83
654 711 7.704472 TGTTGACATCATCCTTAAAACAAACAC 59.296 33.333 0.00 0.00 0.00 3.32
655 712 6.434596 TGACATCATCCTTAAAACAAACACG 58.565 36.000 0.00 0.00 0.00 4.49
656 713 5.768317 ACATCATCCTTAAAACAAACACGG 58.232 37.500 0.00 0.00 0.00 4.94
657 714 5.300792 ACATCATCCTTAAAACAAACACGGT 59.699 36.000 0.00 0.00 0.00 4.83
658 715 5.176407 TCATCCTTAAAACAAACACGGTG 57.824 39.130 6.58 6.58 0.00 4.94
659 716 3.423996 TCCTTAAAACAAACACGGTGC 57.576 42.857 8.30 0.00 0.00 5.01
660 717 2.753452 TCCTTAAAACAAACACGGTGCA 59.247 40.909 8.30 0.00 0.00 4.57
661 718 3.192844 TCCTTAAAACAAACACGGTGCAA 59.807 39.130 8.30 0.00 0.00 4.08
662 719 3.927142 CCTTAAAACAAACACGGTGCAAA 59.073 39.130 8.30 0.00 0.00 3.68
663 720 4.568760 CCTTAAAACAAACACGGTGCAAAT 59.431 37.500 8.30 0.00 0.00 2.32
664 721 5.064071 CCTTAAAACAAACACGGTGCAAATT 59.936 36.000 8.30 0.00 0.00 1.82
665 722 6.255887 CCTTAAAACAAACACGGTGCAAATTA 59.744 34.615 8.30 0.00 0.00 1.40
666 723 7.042389 CCTTAAAACAAACACGGTGCAAATTAT 60.042 33.333 8.30 0.00 0.00 1.28
667 724 6.670077 AAAACAAACACGGTGCAAATTATT 57.330 29.167 8.30 0.00 0.00 1.40
668 725 6.670077 AAACAAACACGGTGCAAATTATTT 57.330 29.167 8.30 0.00 0.00 1.40
669 726 6.670077 AACAAACACGGTGCAAATTATTTT 57.330 29.167 8.30 0.00 0.00 1.82
670 727 6.670077 ACAAACACGGTGCAAATTATTTTT 57.330 29.167 8.30 0.00 0.00 1.94
671 728 6.710611 ACAAACACGGTGCAAATTATTTTTC 58.289 32.000 8.30 0.00 0.00 2.29
672 729 5.568747 AACACGGTGCAAATTATTTTTCG 57.431 34.783 8.30 0.00 0.00 3.46
673 730 3.984633 ACACGGTGCAAATTATTTTTCGG 59.015 39.130 8.30 0.00 0.00 4.30
674 731 2.990514 ACGGTGCAAATTATTTTTCGGC 59.009 40.909 0.00 0.00 0.00 5.54
675 732 2.989840 CGGTGCAAATTATTTTTCGGCA 59.010 40.909 0.00 0.00 0.00 5.69
676 733 3.616379 CGGTGCAAATTATTTTTCGGCAT 59.384 39.130 4.23 0.00 31.92 4.40
677 734 4.259770 CGGTGCAAATTATTTTTCGGCATC 60.260 41.667 4.23 3.19 31.92 3.91
678 735 4.629200 GGTGCAAATTATTTTTCGGCATCA 59.371 37.500 6.23 0.00 31.55 3.07
679 736 5.121454 GGTGCAAATTATTTTTCGGCATCAA 59.879 36.000 6.23 0.00 31.55 2.57
680 737 6.242829 GTGCAAATTATTTTTCGGCATCAAG 58.757 36.000 4.23 0.00 31.92 3.02
681 738 5.163874 TGCAAATTATTTTTCGGCATCAAGC 60.164 36.000 0.00 0.00 44.65 4.01
682 739 5.063817 GCAAATTATTTTTCGGCATCAAGCT 59.936 36.000 0.00 0.00 44.79 3.74
683 740 6.402442 GCAAATTATTTTTCGGCATCAAGCTT 60.402 34.615 0.00 0.00 44.79 3.74
684 741 7.520686 CAAATTATTTTTCGGCATCAAGCTTT 58.479 30.769 0.00 0.00 44.79 3.51
685 742 6.651755 ATTATTTTTCGGCATCAAGCTTTG 57.348 33.333 0.00 0.00 44.79 2.77
686 743 1.782044 TTTTCGGCATCAAGCTTTGC 58.218 45.000 13.65 13.65 44.79 3.68
691 748 3.610637 GCATCAAGCTTTGCCCAAA 57.389 47.368 11.37 0.00 41.15 3.28
692 749 1.881591 GCATCAAGCTTTGCCCAAAA 58.118 45.000 11.37 0.00 41.15 2.44
693 750 2.220313 GCATCAAGCTTTGCCCAAAAA 58.780 42.857 11.37 0.00 41.15 1.94
694 751 2.031769 GCATCAAGCTTTGCCCAAAAAC 60.032 45.455 11.37 0.00 41.15 2.43
695 752 3.204526 CATCAAGCTTTGCCCAAAAACA 58.795 40.909 0.00 0.00 0.00 2.83
700 757 3.295973 AGCTTTGCCCAAAAACACTCTA 58.704 40.909 0.00 0.00 0.00 2.43
705 762 4.647424 TGCCCAAAAACACTCTACAAAG 57.353 40.909 0.00 0.00 0.00 2.77
720 777 7.696453 CACTCTACAAAGTCAAACAACGAAATT 59.304 33.333 0.00 0.00 0.00 1.82
721 778 7.908601 ACTCTACAAAGTCAAACAACGAAATTC 59.091 33.333 0.00 0.00 0.00 2.17
723 780 8.455682 TCTACAAAGTCAAACAACGAAATTCTT 58.544 29.630 0.00 0.00 0.00 2.52
725 782 6.530181 ACAAAGTCAAACAACGAAATTCTTCC 59.470 34.615 0.00 0.00 0.00 3.46
726 783 4.844267 AGTCAAACAACGAAATTCTTCCG 58.156 39.130 0.00 0.00 0.00 4.30
780 838 0.178068 TATCTCTTGCGGAACTGCCC 59.822 55.000 3.11 0.00 0.00 5.36
856 914 1.376424 CCTGCGTGACTCTTGCCAT 60.376 57.895 0.00 0.00 0.00 4.40
913 979 0.857311 CCGCATGATTTCGCACGTTC 60.857 55.000 0.00 0.00 0.00 3.95
926 992 2.809601 CGTTCCAGTCTTCGCCCG 60.810 66.667 0.00 0.00 0.00 6.13
950 1016 4.687483 GCTCACATGATTTTGTTTCCTTGG 59.313 41.667 0.00 0.00 0.00 3.61
951 1017 4.630111 TCACATGATTTTGTTTCCTTGGC 58.370 39.130 0.00 0.00 0.00 4.52
952 1018 4.344679 TCACATGATTTTGTTTCCTTGGCT 59.655 37.500 0.00 0.00 0.00 4.75
953 1019 5.058490 CACATGATTTTGTTTCCTTGGCTT 58.942 37.500 0.00 0.00 0.00 4.35
954 1020 5.049954 CACATGATTTTGTTTCCTTGGCTTG 60.050 40.000 0.00 0.00 0.00 4.01
955 1021 5.163322 ACATGATTTTGTTTCCTTGGCTTGA 60.163 36.000 0.00 0.00 0.00 3.02
956 1022 5.549742 TGATTTTGTTTCCTTGGCTTGAT 57.450 34.783 0.00 0.00 0.00 2.57
957 1023 5.927819 TGATTTTGTTTCCTTGGCTTGATT 58.072 33.333 0.00 0.00 0.00 2.57
958 1024 5.759273 TGATTTTGTTTCCTTGGCTTGATTG 59.241 36.000 0.00 0.00 0.00 2.67
959 1025 5.350504 TTTTGTTTCCTTGGCTTGATTGA 57.649 34.783 0.00 0.00 0.00 2.57
960 1026 4.320608 TTGTTTCCTTGGCTTGATTGAC 57.679 40.909 0.00 0.00 0.00 3.18
961 1027 2.293122 TGTTTCCTTGGCTTGATTGACG 59.707 45.455 0.00 0.00 0.00 4.35
1006 1072 1.735198 GGTCAAACGCCGATGACGA 60.735 57.895 16.91 0.00 45.39 4.20
1007 1073 1.082117 GGTCAAACGCCGATGACGAT 61.082 55.000 16.91 0.00 45.39 3.73
1008 1074 0.025001 GTCAAACGCCGATGACGATG 59.975 55.000 10.83 0.00 42.66 3.84
1009 1075 1.296867 CAAACGCCGATGACGATGC 60.297 57.895 0.00 0.00 42.66 3.91
1177 1245 2.505557 GCAAGATTGCGGCAGTGC 60.506 61.111 6.55 6.55 45.11 4.40
1179 1247 3.434319 AAGATTGCGGCAGTGCGG 61.434 61.111 17.70 17.70 37.81 5.69
1180 1248 3.899981 AAGATTGCGGCAGTGCGGA 62.900 57.895 25.23 11.58 37.81 5.54
1181 1249 3.869272 GATTGCGGCAGTGCGGAG 61.869 66.667 25.23 12.56 37.81 4.63
1236 1304 2.418910 CCATCTGAGCCGTCCGAGT 61.419 63.158 0.00 0.00 0.00 4.18
1238 1306 1.077357 ATCTGAGCCGTCCGAGTCT 60.077 57.895 0.00 0.00 0.00 3.24
1239 1307 1.098712 ATCTGAGCCGTCCGAGTCTC 61.099 60.000 0.00 0.00 0.00 3.36
1240 1308 1.747367 CTGAGCCGTCCGAGTCTCT 60.747 63.158 0.00 0.00 0.00 3.10
1242 1310 2.438795 AGCCGTCCGAGTCTCTCC 60.439 66.667 0.00 0.00 0.00 3.71
1245 1313 1.874345 GCCGTCCGAGTCTCTCCAAA 61.874 60.000 0.00 0.00 0.00 3.28
1248 1316 2.353803 CCGTCCGAGTCTCTCCAAATTT 60.354 50.000 0.00 0.00 0.00 1.82
1372 1441 2.358737 CCCGAGTGGAAGTGGTGC 60.359 66.667 0.00 0.00 37.49 5.01
1403 1472 1.003118 CGTTCCTGATTGGGGTCTTGA 59.997 52.381 0.00 0.00 36.20 3.02
1407 1476 4.402616 TCCTGATTGGGGTCTTGATTTT 57.597 40.909 0.00 0.00 36.20 1.82
1442 1511 2.271497 CAGAGGAAGCTGCCCCTG 59.729 66.667 8.06 8.06 31.84 4.45
1493 1562 1.689243 CGGATGGATGGTGAGCTCCA 61.689 60.000 12.15 3.48 45.27 3.86
1494 1563 0.179034 GGATGGATGGTGAGCTCCAC 60.179 60.000 12.15 9.37 44.06 4.02
1504 1582 3.646162 TGGTGAGCTCCACTTTCTTCTTA 59.354 43.478 12.15 0.00 45.03 2.10
1513 1591 6.935208 GCTCCACTTTCTTCTTAAACCTCTAA 59.065 38.462 0.00 0.00 0.00 2.10
1514 1592 7.118535 GCTCCACTTTCTTCTTAAACCTCTAAG 59.881 40.741 0.00 0.00 0.00 2.18
1516 1594 8.491958 TCCACTTTCTTCTTAAACCTCTAAGTT 58.508 33.333 0.00 0.00 31.86 2.66
1517 1595 9.774413 CCACTTTCTTCTTAAACCTCTAAGTTA 57.226 33.333 0.00 0.00 31.86 2.24
1575 1653 0.107703 GGATGGATGTTGTCAGCGGA 60.108 55.000 0.00 0.00 0.00 5.54
1587 1665 2.118513 AGCGGAGGACACAGGTCT 59.881 61.111 0.00 0.00 43.77 3.85
1629 1711 6.515832 ACCTAGTTTGATTTGCCAAAAGAAG 58.484 36.000 0.00 0.00 37.72 2.85
1682 1764 2.118233 TACCATGTGCGCTGTTGGGA 62.118 55.000 21.44 13.91 33.39 4.37
1683 1765 2.048023 CCATGTGCGCTGTTGGGAT 61.048 57.895 9.73 0.00 0.00 3.85
1684 1766 1.597797 CCATGTGCGCTGTTGGGATT 61.598 55.000 9.73 0.00 0.00 3.01
1685 1767 0.457166 CATGTGCGCTGTTGGGATTG 60.457 55.000 9.73 0.00 0.00 2.67
1686 1768 0.608856 ATGTGCGCTGTTGGGATTGA 60.609 50.000 9.73 0.00 0.00 2.57
1687 1769 1.236616 TGTGCGCTGTTGGGATTGAG 61.237 55.000 9.73 0.00 0.00 3.02
1688 1770 1.073025 TGCGCTGTTGGGATTGAGT 59.927 52.632 9.73 0.00 0.00 3.41
1689 1771 1.236616 TGCGCTGTTGGGATTGAGTG 61.237 55.000 9.73 0.00 0.00 3.51
1690 1772 1.503542 CGCTGTTGGGATTGAGTGC 59.496 57.895 0.00 0.00 0.00 4.40
1691 1773 1.503542 GCTGTTGGGATTGAGTGCG 59.496 57.895 0.00 0.00 0.00 5.34
1692 1774 1.926511 GCTGTTGGGATTGAGTGCGG 61.927 60.000 0.00 0.00 0.00 5.69
1693 1775 1.303236 TGTTGGGATTGAGTGCGGG 60.303 57.895 0.00 0.00 0.00 6.13
1694 1776 2.046285 GTTGGGATTGAGTGCGGGG 61.046 63.158 0.00 0.00 0.00 5.73
1695 1777 3.280938 TTGGGATTGAGTGCGGGGG 62.281 63.158 0.00 0.00 0.00 5.40
1728 2179 3.904800 TGATTCGGCACTCTGGATTAA 57.095 42.857 0.00 0.00 0.00 1.40
1729 2180 4.214986 TGATTCGGCACTCTGGATTAAA 57.785 40.909 0.00 0.00 0.00 1.52
1731 2182 5.924356 TGATTCGGCACTCTGGATTAAATA 58.076 37.500 0.00 0.00 0.00 1.40
1732 2183 6.353323 TGATTCGGCACTCTGGATTAAATAA 58.647 36.000 0.00 0.00 0.00 1.40
1733 2184 6.826231 TGATTCGGCACTCTGGATTAAATAAA 59.174 34.615 0.00 0.00 0.00 1.40
1734 2185 6.677781 TTCGGCACTCTGGATTAAATAAAG 57.322 37.500 0.00 0.00 0.00 1.85
1735 2186 5.984725 TCGGCACTCTGGATTAAATAAAGA 58.015 37.500 0.00 0.00 0.00 2.52
1736 2187 6.411376 TCGGCACTCTGGATTAAATAAAGAA 58.589 36.000 0.00 0.00 0.00 2.52
1737 2188 6.538742 TCGGCACTCTGGATTAAATAAAGAAG 59.461 38.462 0.00 0.00 0.00 2.85
1738 2189 6.538742 CGGCACTCTGGATTAAATAAAGAAGA 59.461 38.462 0.00 0.00 0.00 2.87
1739 2190 7.227512 CGGCACTCTGGATTAAATAAAGAAGAT 59.772 37.037 0.00 0.00 0.00 2.40
1740 2191 9.561069 GGCACTCTGGATTAAATAAAGAAGATA 57.439 33.333 0.00 0.00 0.00 1.98
1747 2198 8.796475 TGGATTAAATAAAGAAGATATGCCTGC 58.204 33.333 0.00 0.00 0.00 4.85
1748 2199 8.796475 GGATTAAATAAAGAAGATATGCCTGCA 58.204 33.333 0.00 0.00 0.00 4.41
1841 2293 1.600636 CTGACTTTTCGGGCCTGCA 60.601 57.895 6.73 0.00 0.00 4.41
1857 2309 2.636830 CTGCATACAAGTGGGAGAAGG 58.363 52.381 0.00 0.00 0.00 3.46
1862 2314 0.765510 ACAAGTGGGAGAAGGGTGTC 59.234 55.000 0.00 0.00 0.00 3.67
1919 2374 2.855514 GCTTGCTTGAAACGGGCCA 61.856 57.895 4.39 0.00 0.00 5.36
1920 2375 1.286880 CTTGCTTGAAACGGGCCAG 59.713 57.895 4.39 1.85 0.00 4.85
1921 2376 2.146073 CTTGCTTGAAACGGGCCAGG 62.146 60.000 8.08 0.00 0.00 4.45
1922 2377 2.282180 GCTTGAAACGGGCCAGGA 60.282 61.111 8.08 0.00 0.00 3.86
1931 2386 1.201429 ACGGGCCAGGAAGATCAAGT 61.201 55.000 8.08 0.00 0.00 3.16
2087 2542 1.075536 ACTCGAAAGGCTTTGGGGAAT 59.924 47.619 25.91 4.13 0.00 3.01
2180 2635 0.392193 CTCGAAATCCTGTGCCTGCT 60.392 55.000 0.00 0.00 0.00 4.24
2374 2830 8.870160 TCACATAGCAAAATTATATTTGTGCC 57.130 30.769 15.68 2.81 41.34 5.01
2394 2850 1.863454 CTATGTCCGCACTGAGCATTC 59.137 52.381 0.00 0.00 46.13 2.67
2399 2855 0.877071 CCGCACTGAGCATTCAACTT 59.123 50.000 0.00 0.00 46.13 2.66
2405 2861 4.676924 GCACTGAGCATTCAACTTGTTAAC 59.323 41.667 0.00 0.00 44.79 2.01
2534 2990 1.228367 CACCTGTGGAAGCAGCCTT 60.228 57.895 0.00 0.00 35.28 4.35
2593 3049 8.643752 CCAGGTAAAAATTATTTAACTGTTGCG 58.356 33.333 22.54 12.48 44.20 4.85
2609 3065 1.021202 TGCGTGTTTGAACTTCAGGG 58.979 50.000 0.00 0.00 0.00 4.45
2610 3066 1.021968 GCGTGTTTGAACTTCAGGGT 58.978 50.000 0.00 0.00 0.00 4.34
2625 3081 1.792949 CAGGGTCTTATGCGCGATAAC 59.207 52.381 12.10 1.37 0.00 1.89
2630 3086 3.308866 GGTCTTATGCGCGATAACTTTGT 59.691 43.478 12.10 0.00 0.00 2.83
2894 3350 6.861065 TCTTCAATACCTGAACAAACTCAC 57.139 37.500 0.00 0.00 39.20 3.51
2947 3403 7.865530 TTGCCAGGACCATAGAGTTAATATA 57.134 36.000 0.00 0.00 0.00 0.86
2950 3406 7.678171 TGCCAGGACCATAGAGTTAATATATCA 59.322 37.037 0.00 0.00 0.00 2.15
3212 3669 3.425162 TGTGGCTTTTGGTTGGTTTTT 57.575 38.095 0.00 0.00 0.00 1.94
3272 3731 1.059913 AGACTACTGCAGGCTGGTTT 58.940 50.000 19.93 0.00 43.00 3.27
3346 3805 7.776969 ACTGTCTTGAATACTTGCATAATGGAT 59.223 33.333 0.00 0.00 0.00 3.41
3498 3958 2.685106 TTTCCCATGTTGCCTTACCA 57.315 45.000 0.00 0.00 0.00 3.25
3803 4263 5.046520 TCTGATGCTCAATATCCTCATCCAG 60.047 44.000 0.00 0.00 34.29 3.86
4123 4585 7.545362 AAATAGTTCAGTGAATCATCCTTCG 57.455 36.000 9.18 0.00 0.00 3.79
4140 4602 8.044309 TCATCCTTCGAATAATTTCACCAACTA 58.956 33.333 0.00 0.00 0.00 2.24
4147 4609 7.656137 TCGAATAATTTCACCAACTATCTAGGC 59.344 37.037 0.00 0.00 0.00 3.93
4163 4625 1.377202 GGCCGTCCATCTTGCTCAA 60.377 57.895 0.00 0.00 0.00 3.02
4237 4699 8.529424 TCTTTACCACTTATTCGAAGGATAGA 57.471 34.615 3.35 2.67 0.00 1.98
4526 4989 5.878669 GGGTATCGAATTTAAAGGTGACACT 59.121 40.000 5.39 0.00 0.00 3.55
4556 5019 3.264193 AGATTGGCACATACAACCTCTCA 59.736 43.478 0.00 0.00 39.30 3.27
4625 5088 5.659079 AGTAACTTCGATTGATCTCTCCCTT 59.341 40.000 0.00 0.00 0.00 3.95
4722 5185 0.179119 AGTTGCCGCGTCAGGTATAC 60.179 55.000 4.92 0.00 0.00 1.47
4723 5186 0.458889 GTTGCCGCGTCAGGTATACA 60.459 55.000 4.92 0.00 0.00 2.29
4759 5222 1.986378 CTTCGACGTTACTCCAGCAAG 59.014 52.381 0.00 0.00 0.00 4.01
4855 5318 2.223572 GCTCTTTTGGTGTTGGTCTGTG 60.224 50.000 0.00 0.00 0.00 3.66
4869 5332 4.588899 TGGTCTGTGCTGCATTATTAGTT 58.411 39.130 5.27 0.00 0.00 2.24
4896 5359 0.106918 TTCTTGTGCGTGTTTCCCCT 60.107 50.000 0.00 0.00 0.00 4.79
4897 5360 0.106918 TCTTGTGCGTGTTTCCCCTT 60.107 50.000 0.00 0.00 0.00 3.95
4898 5361 0.030638 CTTGTGCGTGTTTCCCCTTG 59.969 55.000 0.00 0.00 0.00 3.61
4899 5362 0.394488 TTGTGCGTGTTTCCCCTTGA 60.394 50.000 0.00 0.00 0.00 3.02
4900 5363 0.179004 TGTGCGTGTTTCCCCTTGAT 60.179 50.000 0.00 0.00 0.00 2.57
4901 5364 0.958822 GTGCGTGTTTCCCCTTGATT 59.041 50.000 0.00 0.00 0.00 2.57
4902 5365 1.068541 GTGCGTGTTTCCCCTTGATTC 60.069 52.381 0.00 0.00 0.00 2.52
4912 5375 1.633432 CCCCTTGATTCACAGGGTGTA 59.367 52.381 22.09 0.00 43.14 2.90
4983 5446 0.689055 TGTGCCAAGTGATGCTCTCT 59.311 50.000 0.00 0.00 0.00 3.10
4984 5447 1.338484 TGTGCCAAGTGATGCTCTCTC 60.338 52.381 0.00 0.00 0.00 3.20
5049 5512 5.687780 TCACACAATTGATGATAGGATGCT 58.312 37.500 13.59 0.00 0.00 3.79
5064 5527 2.205074 GATGCTCATGTTGTACTCCCG 58.795 52.381 0.00 0.00 0.00 5.14
5065 5528 1.262417 TGCTCATGTTGTACTCCCGA 58.738 50.000 0.00 0.00 0.00 5.14
5101 5564 9.937175 CTTTCGAAGTGAGAGAAAAATAAAGTT 57.063 29.630 0.00 0.00 34.07 2.66
5118 5581 8.861033 AATAAAGTTGCGTACGAGATGTATTA 57.139 30.769 21.65 8.84 35.02 0.98
5119 5582 6.564854 AAAGTTGCGTACGAGATGTATTAC 57.435 37.500 21.65 0.00 35.02 1.89
5269 5735 4.168101 AGAACAGAGGTGGGAATACTGAA 58.832 43.478 0.00 0.00 33.53 3.02
5283 5749 6.349033 GGGAATACTGAAAATTTACGTGCAGT 60.349 38.462 0.00 0.00 39.61 4.40
5307 5776 6.742559 AGTGGTCTTTACCTTCTAGTTGAA 57.257 37.500 0.00 0.00 46.91 2.69
5323 5792 4.610945 AGTTGAAGTTGCTCCAATTTTCG 58.389 39.130 0.00 0.00 0.00 3.46
5339 5808 9.114952 TCCAATTTTCGTATGCTGTTTATATGA 57.885 29.630 0.00 0.00 0.00 2.15
5404 5875 6.649141 CACAACTACTGGAGCATAAACACTTA 59.351 38.462 0.00 0.00 0.00 2.24
5412 5886 6.296026 TGGAGCATAAACACTTACTCTGTTT 58.704 36.000 2.39 2.39 42.94 2.83
5434 5908 7.386573 TGTTTCTCGTTATGCAGTCTATGAAAA 59.613 33.333 0.00 0.00 0.00 2.29
5439 5913 7.471721 TCGTTATGCAGTCTATGAAAATTTGG 58.528 34.615 0.00 0.00 0.00 3.28
5471 5945 2.341846 TGAATCAAAGGTATCGGGCC 57.658 50.000 0.00 0.00 0.00 5.80
5472 5946 1.133915 TGAATCAAAGGTATCGGGCCC 60.134 52.381 13.57 13.57 0.00 5.80
5473 5947 0.179029 AATCAAAGGTATCGGGCCCG 60.179 55.000 39.13 39.13 41.35 6.13
5488 5962 3.227614 GGGCCCGTAACATATGGAATTT 58.772 45.455 5.69 0.00 36.98 1.82
5493 5967 4.578516 CCCGTAACATATGGAATTTCAGCA 59.421 41.667 7.80 0.00 36.98 4.41
5533 6007 6.998074 TGAGATAAAGGTGTTCTTGACATGTT 59.002 34.615 0.00 0.00 41.10 2.71
5539 6013 5.835257 AGGTGTTCTTGACATGTTCATTTG 58.165 37.500 0.00 0.00 41.10 2.32
5542 6016 5.519566 GTGTTCTTGACATGTTCATTTGCAA 59.480 36.000 0.00 0.00 41.10 4.08
5566 6040 2.519771 TCTCCAAATGCATCTTGCCT 57.480 45.000 0.00 0.00 44.23 4.75
5574 6048 0.607217 TGCATCTTGCCTGGTGTCTG 60.607 55.000 0.00 0.00 44.23 3.51
5590 6064 4.053295 GTGTCTGAAGCATGCAACATTTT 58.947 39.130 21.98 3.54 0.00 1.82
5594 6068 2.288334 TGAAGCATGCAACATTTTCGCT 60.288 40.909 21.98 0.00 0.00 4.93
5612 6086 0.608640 CTCTAGTTCGCCACCCTTGT 59.391 55.000 0.00 0.00 0.00 3.16
5631 6105 4.336889 TGTGTCAGAAATCTTTCTCGGT 57.663 40.909 2.21 0.00 45.23 4.69
5637 6111 3.614616 CAGAAATCTTTCTCGGTTCCTCG 59.385 47.826 2.21 0.00 45.23 4.63
5645 6119 1.743958 TCTCGGTTCCTCGATCTTCAC 59.256 52.381 0.00 0.00 38.55 3.18
5698 6172 7.452501 TCCATTTCTTCATTTGGAACATCTTCT 59.547 33.333 0.00 0.00 39.30 2.85
5699 6173 7.544566 CCATTTCTTCATTTGGAACATCTTCTG 59.455 37.037 0.00 0.00 39.30 3.02
5700 6174 6.579666 TTCTTCATTTGGAACATCTTCTGG 57.420 37.500 0.00 0.00 39.30 3.86
5701 6175 5.012239 TCTTCATTTGGAACATCTTCTGGG 58.988 41.667 0.00 0.00 39.30 4.45
5702 6176 3.700538 TCATTTGGAACATCTTCTGGGG 58.299 45.455 0.00 0.00 39.30 4.96
5704 6178 4.290985 TCATTTGGAACATCTTCTGGGGTA 59.709 41.667 0.00 0.00 39.30 3.69
5705 6179 3.713826 TTGGAACATCTTCTGGGGTAC 57.286 47.619 0.00 0.00 39.30 3.34
5706 6180 2.915869 TGGAACATCTTCTGGGGTACT 58.084 47.619 0.00 0.00 0.00 2.73
5707 6181 3.256704 TGGAACATCTTCTGGGGTACTT 58.743 45.455 0.00 0.00 0.00 2.24
5708 6182 3.009033 TGGAACATCTTCTGGGGTACTTG 59.991 47.826 0.00 0.00 0.00 3.16
5732 6210 8.288689 TGACTTTTTGGCTATATTCTTTACCC 57.711 34.615 0.00 0.00 0.00 3.69
5809 6294 2.870035 AAACTTGTGCCTGGGCCACA 62.870 55.000 0.00 10.29 41.09 4.17
5810 6295 2.283388 CTTGTGCCTGGGCCACAT 60.283 61.111 0.00 0.00 41.09 3.21
5811 6296 1.909781 CTTGTGCCTGGGCCACATT 60.910 57.895 0.00 0.00 41.09 2.71
5812 6297 2.162338 CTTGTGCCTGGGCCACATTG 62.162 60.000 0.00 0.00 41.09 2.82
5813 6298 4.073200 GTGCCTGGGCCACATTGC 62.073 66.667 0.00 3.67 41.09 3.56
5847 6332 0.606604 GCGAGGTGAGTCTTTACCCA 59.393 55.000 4.16 0.00 37.70 4.51
5849 6334 1.616865 CGAGGTGAGTCTTTACCCACA 59.383 52.381 0.00 0.00 37.70 4.17
5850 6335 2.609737 CGAGGTGAGTCTTTACCCACAC 60.610 54.545 0.00 0.00 37.70 3.82
5852 6337 3.046374 AGGTGAGTCTTTACCCACACTT 58.954 45.455 0.00 0.00 37.70 3.16
5853 6338 3.071167 AGGTGAGTCTTTACCCACACTTC 59.929 47.826 0.00 0.00 37.70 3.01
5854 6339 3.071167 GGTGAGTCTTTACCCACACTTCT 59.929 47.826 0.00 0.00 0.00 2.85
5936 6431 2.929398 CAACGCTGAAAACAAAAGGCTT 59.071 40.909 0.00 0.00 0.00 4.35
5961 6456 4.315803 CAAGAACAACTATCCCAACGACT 58.684 43.478 0.00 0.00 0.00 4.18
5968 6463 7.141100 ACAACTATCCCAACGACTAATTTTG 57.859 36.000 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.721208 AGAATCACCAAACACCTCAATATGTT 59.279 34.615 0.00 0.00 40.76 2.71
60 61 8.800370 TGGATATTTGTTGCACTACTCATAAA 57.200 30.769 0.00 0.00 0.00 1.40
210 222 9.149466 ATGATCAACATAGTAGCCGGATGCTTA 62.149 40.741 17.42 2.42 42.14 3.09
308 322 2.418368 ATTCATTAGTGGCCGAAGCA 57.582 45.000 0.00 0.00 42.56 3.91
338 352 4.517285 TCAATAATGAGCTTCCTTTCGCT 58.483 39.130 0.00 0.00 39.61 4.93
386 400 0.744414 CGCCGAACCATCTTGTCCAT 60.744 55.000 0.00 0.00 0.00 3.41
442 456 5.755409 ATACCATCAATAGTCCGGCAATA 57.245 39.130 0.00 0.00 0.00 1.90
470 484 9.173939 CTCATTGCTTAGTTTTCAAACACTTAG 57.826 33.333 5.26 0.00 41.30 2.18
472 486 7.547227 ACTCATTGCTTAGTTTTCAAACACTT 58.453 30.769 5.26 0.00 41.30 3.16
506 520 2.198827 TGATGCGAACTTGGTTGGAT 57.801 45.000 0.00 0.00 0.00 3.41
511 525 2.687935 ACTTTGTTGATGCGAACTTGGT 59.312 40.909 0.00 0.00 0.00 3.67
553 567 8.696374 GCTTAGAGTGATAACTATATATGGGCA 58.304 37.037 0.80 0.00 0.00 5.36
573 622 8.885693 ATATATCGGCCATCTATATGCTTAGA 57.114 34.615 2.24 0.00 32.94 2.10
645 702 6.670077 AAATAATTTGCACCGTGTTTGTTT 57.330 29.167 0.00 0.00 0.00 2.83
650 707 4.446051 CCGAAAAATAATTTGCACCGTGTT 59.554 37.500 0.00 0.00 0.00 3.32
651 708 3.984633 CCGAAAAATAATTTGCACCGTGT 59.015 39.130 0.00 0.00 0.00 4.49
652 709 3.181535 GCCGAAAAATAATTTGCACCGTG 60.182 43.478 0.00 0.00 0.00 4.94
653 710 2.990514 GCCGAAAAATAATTTGCACCGT 59.009 40.909 0.00 0.00 0.00 4.83
654 711 2.989840 TGCCGAAAAATAATTTGCACCG 59.010 40.909 0.00 0.00 0.00 4.94
655 712 4.629200 TGATGCCGAAAAATAATTTGCACC 59.371 37.500 0.00 0.00 30.63 5.01
656 713 5.776519 TGATGCCGAAAAATAATTTGCAC 57.223 34.783 0.00 0.00 30.63 4.57
657 714 5.163874 GCTTGATGCCGAAAAATAATTTGCA 60.164 36.000 0.00 0.00 31.89 4.08
658 715 5.063817 AGCTTGATGCCGAAAAATAATTTGC 59.936 36.000 0.00 0.00 44.23 3.68
659 716 6.651755 AGCTTGATGCCGAAAAATAATTTG 57.348 33.333 0.00 0.00 44.23 2.32
660 717 7.520686 CAAAGCTTGATGCCGAAAAATAATTT 58.479 30.769 0.00 0.00 44.23 1.82
661 718 6.402442 GCAAAGCTTGATGCCGAAAAATAATT 60.402 34.615 11.37 0.00 44.23 1.40
662 719 5.063817 GCAAAGCTTGATGCCGAAAAATAAT 59.936 36.000 11.37 0.00 44.23 1.28
663 720 4.388469 GCAAAGCTTGATGCCGAAAAATAA 59.612 37.500 11.37 0.00 44.23 1.40
664 721 3.925913 GCAAAGCTTGATGCCGAAAAATA 59.074 39.130 11.37 0.00 44.23 1.40
665 722 2.738314 GCAAAGCTTGATGCCGAAAAAT 59.262 40.909 11.37 0.00 44.23 1.82
666 723 2.134346 GCAAAGCTTGATGCCGAAAAA 58.866 42.857 11.37 0.00 44.23 1.94
667 724 1.782044 GCAAAGCTTGATGCCGAAAA 58.218 45.000 11.37 0.00 44.23 2.29
668 725 3.495124 GCAAAGCTTGATGCCGAAA 57.505 47.368 11.37 0.00 44.23 3.46
673 730 1.881591 TTTTGGGCAAAGCTTGATGC 58.118 45.000 13.65 13.65 41.82 3.91
674 731 3.002553 GTGTTTTTGGGCAAAGCTTGATG 59.997 43.478 0.00 0.00 0.00 3.07
675 732 3.118298 AGTGTTTTTGGGCAAAGCTTGAT 60.118 39.130 0.00 0.00 0.00 2.57
676 733 2.235898 AGTGTTTTTGGGCAAAGCTTGA 59.764 40.909 0.00 0.00 0.00 3.02
677 734 2.609002 GAGTGTTTTTGGGCAAAGCTTG 59.391 45.455 0.00 0.00 0.00 4.01
678 735 2.501316 AGAGTGTTTTTGGGCAAAGCTT 59.499 40.909 0.00 0.00 0.00 3.74
679 736 2.110578 AGAGTGTTTTTGGGCAAAGCT 58.889 42.857 0.00 0.00 0.00 3.74
680 737 2.602257 AGAGTGTTTTTGGGCAAAGC 57.398 45.000 0.00 0.00 0.00 3.51
681 738 4.647424 TGTAGAGTGTTTTTGGGCAAAG 57.353 40.909 0.00 0.00 0.00 2.77
682 739 5.046950 ACTTTGTAGAGTGTTTTTGGGCAAA 60.047 36.000 0.00 0.00 0.00 3.68
683 740 4.464597 ACTTTGTAGAGTGTTTTTGGGCAA 59.535 37.500 0.00 0.00 0.00 4.52
684 741 4.020543 ACTTTGTAGAGTGTTTTTGGGCA 58.979 39.130 0.00 0.00 0.00 5.36
685 742 4.097286 TGACTTTGTAGAGTGTTTTTGGGC 59.903 41.667 0.00 0.00 0.00 5.36
686 743 5.828299 TGACTTTGTAGAGTGTTTTTGGG 57.172 39.130 0.00 0.00 0.00 4.12
687 744 7.087639 TGTTTGACTTTGTAGAGTGTTTTTGG 58.912 34.615 0.00 0.00 0.00 3.28
688 745 8.424731 GTTGTTTGACTTTGTAGAGTGTTTTTG 58.575 33.333 0.00 0.00 0.00 2.44
689 746 7.325097 CGTTGTTTGACTTTGTAGAGTGTTTTT 59.675 33.333 0.00 0.00 0.00 1.94
690 747 6.799925 CGTTGTTTGACTTTGTAGAGTGTTTT 59.200 34.615 0.00 0.00 0.00 2.43
691 748 6.148150 TCGTTGTTTGACTTTGTAGAGTGTTT 59.852 34.615 0.00 0.00 0.00 2.83
692 749 5.640357 TCGTTGTTTGACTTTGTAGAGTGTT 59.360 36.000 0.00 0.00 0.00 3.32
693 750 5.172934 TCGTTGTTTGACTTTGTAGAGTGT 58.827 37.500 0.00 0.00 0.00 3.55
694 751 5.712217 TCGTTGTTTGACTTTGTAGAGTG 57.288 39.130 0.00 0.00 0.00 3.51
695 752 6.730960 TTTCGTTGTTTGACTTTGTAGAGT 57.269 33.333 0.00 0.00 0.00 3.24
700 757 6.530181 GGAAGAATTTCGTTGTTTGACTTTGT 59.470 34.615 0.00 0.00 33.98 2.83
705 762 3.972502 CCGGAAGAATTTCGTTGTTTGAC 59.027 43.478 0.00 0.00 33.98 3.18
721 778 3.262420 ACATGACGAATCTTTCCGGAAG 58.738 45.455 17.97 11.75 36.67 3.46
723 780 2.418197 GGACATGACGAATCTTTCCGGA 60.418 50.000 0.00 0.00 0.00 5.14
725 782 2.604914 CAGGACATGACGAATCTTTCCG 59.395 50.000 0.00 0.00 0.00 4.30
726 783 2.352960 GCAGGACATGACGAATCTTTCC 59.647 50.000 0.00 0.00 0.00 3.13
780 838 1.202031 GCAATAACGCGGGAGTTGAAG 60.202 52.381 12.47 0.00 35.70 3.02
839 897 1.690283 CGATGGCAAGAGTCACGCAG 61.690 60.000 0.00 0.00 28.11 5.18
926 992 4.525912 AGGAAACAAAATCATGTGAGCC 57.474 40.909 0.00 0.00 32.81 4.70
950 1016 0.373716 CCCGCTAACGTCAATCAAGC 59.626 55.000 0.00 0.00 37.70 4.01
951 1017 1.927174 CTCCCGCTAACGTCAATCAAG 59.073 52.381 0.00 0.00 37.70 3.02
952 1018 2.004583 CTCCCGCTAACGTCAATCAA 57.995 50.000 0.00 0.00 37.70 2.57
953 1019 0.459585 GCTCCCGCTAACGTCAATCA 60.460 55.000 0.00 0.00 37.70 2.57
954 1020 1.480219 CGCTCCCGCTAACGTCAATC 61.480 60.000 0.00 0.00 37.70 2.67
955 1021 1.518572 CGCTCCCGCTAACGTCAAT 60.519 57.895 0.00 0.00 37.70 2.57
956 1022 2.126228 CGCTCCCGCTAACGTCAA 60.126 61.111 0.00 0.00 37.70 3.18
957 1023 3.367743 ACGCTCCCGCTAACGTCA 61.368 61.111 0.00 0.00 38.22 4.35
958 1024 2.578981 GACGCTCCCGCTAACGTC 60.579 66.667 0.00 0.00 46.64 4.34
959 1025 3.048941 GAGACGCTCCCGCTAACGT 62.049 63.158 0.00 0.00 42.27 3.99
960 1026 2.278013 GAGACGCTCCCGCTAACG 60.278 66.667 0.00 0.00 38.22 3.18
961 1027 2.278013 CGAGACGCTCCCGCTAAC 60.278 66.667 2.00 0.00 38.22 2.34
974 1040 0.756294 TTGACCTGGCTTTCACGAGA 59.244 50.000 0.00 0.00 0.00 4.04
975 1041 1.264288 GTTTGACCTGGCTTTCACGAG 59.736 52.381 0.00 0.00 0.00 4.18
980 1046 1.285950 GGCGTTTGACCTGGCTTTC 59.714 57.895 0.00 0.00 0.00 2.62
1171 1239 4.400961 AGAAGGGCTCCGCACTGC 62.401 66.667 0.00 0.00 43.87 4.40
1172 1240 2.125350 GAGAAGGGCTCCGCACTG 60.125 66.667 0.00 0.00 43.87 3.66
1174 1242 2.435059 GTGAGAAGGGCTCCGCAC 60.435 66.667 0.00 0.00 43.26 5.34
1175 1243 3.706373 GGTGAGAAGGGCTCCGCA 61.706 66.667 0.00 0.00 43.26 5.69
1176 1244 3.378399 GAGGTGAGAAGGGCTCCGC 62.378 68.421 0.00 0.00 43.26 5.54
1177 1245 2.726351 GGAGGTGAGAAGGGCTCCG 61.726 68.421 0.00 0.00 43.26 4.63
1179 1247 0.467804 GATGGAGGTGAGAAGGGCTC 59.532 60.000 0.00 0.00 44.21 4.70
1180 1248 0.985490 GGATGGAGGTGAGAAGGGCT 60.985 60.000 0.00 0.00 0.00 5.19
1181 1249 0.985490 AGGATGGAGGTGAGAAGGGC 60.985 60.000 0.00 0.00 0.00 5.19
1182 1250 1.127343 GAGGATGGAGGTGAGAAGGG 58.873 60.000 0.00 0.00 0.00 3.95
1183 1251 1.761784 CAGAGGATGGAGGTGAGAAGG 59.238 57.143 0.00 0.00 0.00 3.46
1184 1252 2.465813 ACAGAGGATGGAGGTGAGAAG 58.534 52.381 0.00 0.00 0.00 2.85
1185 1253 2.630889 ACAGAGGATGGAGGTGAGAA 57.369 50.000 0.00 0.00 0.00 2.87
1186 1254 2.043664 AGAACAGAGGATGGAGGTGAGA 59.956 50.000 0.00 0.00 0.00 3.27
1187 1255 2.465813 AGAACAGAGGATGGAGGTGAG 58.534 52.381 0.00 0.00 0.00 3.51
1188 1256 2.630889 AGAACAGAGGATGGAGGTGA 57.369 50.000 0.00 0.00 0.00 4.02
1189 1257 2.568956 TGAAGAACAGAGGATGGAGGTG 59.431 50.000 0.00 0.00 0.00 4.00
1190 1258 2.569404 GTGAAGAACAGAGGATGGAGGT 59.431 50.000 0.00 0.00 0.00 3.85
1217 1285 2.044352 TCGGACGGCTCAGATGGA 60.044 61.111 0.00 0.00 0.00 3.41
1236 1304 0.695924 TGGCCGGAAATTTGGAGAGA 59.304 50.000 5.05 0.00 0.00 3.10
1238 1306 0.695924 TCTGGCCGGAAATTTGGAGA 59.304 50.000 13.31 0.00 0.00 3.71
1239 1307 1.544724 TTCTGGCCGGAAATTTGGAG 58.455 50.000 25.12 0.00 0.00 3.86
1240 1308 1.824230 CATTCTGGCCGGAAATTTGGA 59.176 47.619 30.31 6.72 0.00 3.53
1242 1310 1.134729 CCCATTCTGGCCGGAAATTTG 60.135 52.381 30.31 22.62 35.79 2.32
1245 1313 1.076044 CCCCATTCTGGCCGGAAAT 60.076 57.895 30.31 15.95 35.79 2.17
1248 1316 4.750695 TCCCCCATTCTGGCCGGA 62.751 66.667 11.27 11.27 35.79 5.14
1269 1338 2.510238 ATGGACTGAAGCGCGCTC 60.510 61.111 36.57 26.35 0.00 5.03
1372 1441 0.601558 TCAGGAACGGAAGAACTCGG 59.398 55.000 0.00 0.00 0.00 4.63
1407 1476 5.068855 TCCTCTGCATCACATCAAACAAAAA 59.931 36.000 0.00 0.00 0.00 1.94
1409 1478 4.143543 TCCTCTGCATCACATCAAACAAA 58.856 39.130 0.00 0.00 0.00 2.83
1410 1479 3.753815 TCCTCTGCATCACATCAAACAA 58.246 40.909 0.00 0.00 0.00 2.83
1412 1481 3.427233 GCTTCCTCTGCATCACATCAAAC 60.427 47.826 0.00 0.00 0.00 2.93
1415 1484 1.558294 AGCTTCCTCTGCATCACATCA 59.442 47.619 0.00 0.00 0.00 3.07
1442 1511 2.554893 GACATCGATGTAGACCTCCTCC 59.445 54.545 30.04 10.58 41.95 4.30
1540 1618 9.775539 AACATCCATCCTCATACATATACTACT 57.224 33.333 0.00 0.00 0.00 2.57
1541 1619 9.809096 CAACATCCATCCTCATACATATACTAC 57.191 37.037 0.00 0.00 0.00 2.73
1543 1621 8.441311 ACAACATCCATCCTCATACATATACT 57.559 34.615 0.00 0.00 0.00 2.12
1544 1622 8.314021 TGACAACATCCATCCTCATACATATAC 58.686 37.037 0.00 0.00 0.00 1.47
1545 1623 8.434589 TGACAACATCCATCCTCATACATATA 57.565 34.615 0.00 0.00 0.00 0.86
1546 1624 7.320384 TGACAACATCCATCCTCATACATAT 57.680 36.000 0.00 0.00 0.00 1.78
1547 1625 6.742363 GCTGACAACATCCATCCTCATACATA 60.742 42.308 0.00 0.00 0.00 2.29
1548 1626 5.618236 CTGACAACATCCATCCTCATACAT 58.382 41.667 0.00 0.00 0.00 2.29
1549 1627 4.684214 GCTGACAACATCCATCCTCATACA 60.684 45.833 0.00 0.00 0.00 2.29
1550 1628 3.812053 GCTGACAACATCCATCCTCATAC 59.188 47.826 0.00 0.00 0.00 2.39
1551 1629 3.493176 CGCTGACAACATCCATCCTCATA 60.493 47.826 0.00 0.00 0.00 2.15
1552 1630 2.744166 CGCTGACAACATCCATCCTCAT 60.744 50.000 0.00 0.00 0.00 2.90
1553 1631 1.405933 CGCTGACAACATCCATCCTCA 60.406 52.381 0.00 0.00 0.00 3.86
1554 1632 1.293924 CGCTGACAACATCCATCCTC 58.706 55.000 0.00 0.00 0.00 3.71
1555 1633 0.107508 CCGCTGACAACATCCATCCT 60.108 55.000 0.00 0.00 0.00 3.24
1556 1634 0.107703 TCCGCTGACAACATCCATCC 60.108 55.000 0.00 0.00 0.00 3.51
1557 1635 1.293924 CTCCGCTGACAACATCCATC 58.706 55.000 0.00 0.00 0.00 3.51
1558 1636 0.107508 CCTCCGCTGACAACATCCAT 60.108 55.000 0.00 0.00 0.00 3.41
1559 1637 1.191489 TCCTCCGCTGACAACATCCA 61.191 55.000 0.00 0.00 0.00 3.41
1575 1653 2.225650 ACCCTGAATAGACCTGTGTCCT 60.226 50.000 0.00 0.00 42.81 3.85
1631 1713 1.525995 AAAGGCAGTCACCACGGTG 60.526 57.895 10.09 10.09 46.64 4.94
1692 1774 0.562674 ATCAATTCCCCATGACCCCC 59.437 55.000 0.00 0.00 0.00 5.40
1693 1775 2.319844 GAATCAATTCCCCATGACCCC 58.680 52.381 0.00 0.00 0.00 4.95
1694 1776 1.956477 CGAATCAATTCCCCATGACCC 59.044 52.381 0.00 0.00 33.28 4.46
1695 1777 1.956477 CCGAATCAATTCCCCATGACC 59.044 52.381 0.00 0.00 33.28 4.02
1696 1778 1.338020 GCCGAATCAATTCCCCATGAC 59.662 52.381 0.00 0.00 33.28 3.06
1697 1779 1.064091 TGCCGAATCAATTCCCCATGA 60.064 47.619 0.00 0.00 33.28 3.07
1698 1780 1.067516 GTGCCGAATCAATTCCCCATG 59.932 52.381 0.00 0.00 33.28 3.66
1699 1781 1.063717 AGTGCCGAATCAATTCCCCAT 60.064 47.619 0.00 0.00 33.28 4.00
1700 1782 0.331278 AGTGCCGAATCAATTCCCCA 59.669 50.000 0.00 0.00 33.28 4.96
1701 1783 1.025041 GAGTGCCGAATCAATTCCCC 58.975 55.000 0.00 0.00 33.28 4.81
1702 1784 1.672881 CAGAGTGCCGAATCAATTCCC 59.327 52.381 0.00 0.00 33.28 3.97
1703 1785 1.672881 CCAGAGTGCCGAATCAATTCC 59.327 52.381 0.00 0.00 33.28 3.01
1757 2209 4.202367 CCAGGTTTCGCCTCCTATATCTTT 60.202 45.833 0.00 0.00 46.96 2.52
1841 2293 2.572104 GACACCCTTCTCCCACTTGTAT 59.428 50.000 0.00 0.00 0.00 2.29
1870 2322 2.764128 TGTCCATCTCCCGAGCCC 60.764 66.667 0.00 0.00 0.00 5.19
1871 2323 2.801631 CCTGTCCATCTCCCGAGCC 61.802 68.421 0.00 0.00 0.00 4.70
1872 2324 0.755698 TACCTGTCCATCTCCCGAGC 60.756 60.000 0.00 0.00 0.00 5.03
1873 2325 1.615883 CATACCTGTCCATCTCCCGAG 59.384 57.143 0.00 0.00 0.00 4.63
1874 2326 1.063190 ACATACCTGTCCATCTCCCGA 60.063 52.381 0.00 0.00 0.00 5.14
1875 2327 1.069204 CACATACCTGTCCATCTCCCG 59.931 57.143 0.00 0.00 31.62 5.14
1876 2328 1.417890 CCACATACCTGTCCATCTCCC 59.582 57.143 0.00 0.00 31.62 4.30
1919 2374 6.693315 TTTTTCGTTTCACTTGATCTTCCT 57.307 33.333 0.00 0.00 0.00 3.36
1920 2375 5.399596 GCTTTTTCGTTTCACTTGATCTTCC 59.600 40.000 0.00 0.00 0.00 3.46
1921 2376 5.399596 GGCTTTTTCGTTTCACTTGATCTTC 59.600 40.000 0.00 0.00 0.00 2.87
1922 2377 5.163561 TGGCTTTTTCGTTTCACTTGATCTT 60.164 36.000 0.00 0.00 0.00 2.40
1931 2386 3.181491 CCTTGTCTGGCTTTTTCGTTTCA 60.181 43.478 0.00 0.00 0.00 2.69
2247 2702 8.484641 TCTATCATTTCATCAGTGTCAAGTTC 57.515 34.615 0.00 0.00 0.00 3.01
2250 2705 8.260270 TGTTCTATCATTTCATCAGTGTCAAG 57.740 34.615 0.00 0.00 0.00 3.02
2362 2818 4.709250 TGCGGACATAGGCACAAATATAA 58.291 39.130 0.00 0.00 33.52 0.98
2374 2830 1.863454 GAATGCTCAGTGCGGACATAG 59.137 52.381 10.52 7.08 46.63 2.23
2385 2841 6.064846 AGTGTTAACAAGTTGAATGCTCAG 57.935 37.500 10.51 0.00 31.69 3.35
2394 2850 7.538678 GCATTCCTGAATAGTGTTAACAAGTTG 59.461 37.037 10.51 0.00 0.00 3.16
2399 2855 5.483811 TCGCATTCCTGAATAGTGTTAACA 58.516 37.500 3.59 3.59 0.00 2.41
2405 2861 4.625028 TCTGATCGCATTCCTGAATAGTG 58.375 43.478 0.00 0.00 0.00 2.74
2593 3049 5.562890 GCATAAGACCCTGAAGTTCAAACAC 60.563 44.000 7.06 0.01 0.00 3.32
2609 3065 4.516092 ACAAAGTTATCGCGCATAAGAC 57.484 40.909 8.75 0.00 0.00 3.01
2610 3066 4.033587 GGAACAAAGTTATCGCGCATAAGA 59.966 41.667 8.75 0.00 0.00 2.10
2894 3350 3.182182 CATACACACTGGTCACGATGAG 58.818 50.000 0.00 0.00 0.00 2.90
2907 3363 2.159448 TGGCAATTAAGCGCATACACAC 60.159 45.455 11.47 0.00 34.64 3.82
3212 3669 1.996086 GGGCCAAACTACCCTGCTA 59.004 57.895 4.39 0.00 43.36 3.49
3272 3731 4.072131 GTTTCTTGCTGGTCACCTATTGA 58.928 43.478 0.00 0.00 0.00 2.57
3311 3770 0.657312 TTCAAGACAGTTGCGCACAG 59.343 50.000 11.12 5.31 0.00 3.66
3498 3958 8.062065 TGAAAATTTATGAGGGCGTAAAATCT 57.938 30.769 0.00 0.00 38.56 2.40
3560 4020 4.040706 AGGTGCACCAACAATTTCATCAAT 59.959 37.500 36.39 8.02 38.89 2.57
3900 4360 1.683385 GTTTCAGTGCAGAAGGCCTTT 59.317 47.619 21.54 6.91 43.89 3.11
4101 4563 6.471233 TCGAAGGATGATTCACTGAACTAT 57.529 37.500 0.00 0.00 0.00 2.12
4123 4585 7.095187 CGGCCTAGATAGTTGGTGAAATTATTC 60.095 40.741 0.00 0.00 36.04 1.75
4140 4602 0.394565 GCAAGATGGACGGCCTAGAT 59.605 55.000 9.82 0.00 34.31 1.98
4147 4609 2.028420 TGATTGAGCAAGATGGACGG 57.972 50.000 0.00 0.00 0.00 4.79
4225 4687 4.631377 CACACTGCAAATCTATCCTTCGAA 59.369 41.667 0.00 0.00 0.00 3.71
4237 4699 3.016031 TGTCTGTGAACACACTGCAAAT 58.984 40.909 3.39 0.00 36.21 2.32
4556 5019 2.927871 GCCGTGATGCTTTGCAGAAATT 60.928 45.455 0.00 0.00 43.65 1.82
4625 5088 0.391130 CGATTTGCTTCCCAGACGGA 60.391 55.000 0.00 0.00 39.68 4.69
4662 5125 6.039717 CCTTCAGAGTTCAACAATTCCTTTGA 59.960 38.462 0.00 0.00 38.76 2.69
4722 5185 2.359975 GGCGGGGTTCCAGACTTG 60.360 66.667 0.00 0.00 0.00 3.16
4723 5186 2.125766 GAAGGCGGGGTTCCAGACTT 62.126 60.000 4.90 4.90 37.53 3.01
4855 5318 7.762382 AGAAGTTTACCAACTAATAATGCAGC 58.238 34.615 0.00 0.00 42.89 5.25
4869 5332 2.634600 ACACGCACAAGAAGTTTACCA 58.365 42.857 0.00 0.00 0.00 3.25
4896 5359 4.979335 TGTGATTACACCCTGTGAATCAA 58.021 39.130 16.37 9.43 45.40 2.57
4897 5360 4.632327 TGTGATTACACCCTGTGAATCA 57.368 40.909 13.27 13.27 45.40 2.57
4898 5361 5.473504 ACTTTGTGATTACACCCTGTGAATC 59.526 40.000 0.49 6.79 45.40 2.52
4899 5362 5.385198 ACTTTGTGATTACACCCTGTGAAT 58.615 37.500 0.49 0.00 45.40 2.57
4900 5363 4.787551 ACTTTGTGATTACACCCTGTGAA 58.212 39.130 0.49 0.00 45.40 3.18
4901 5364 4.102524 AGACTTTGTGATTACACCCTGTGA 59.897 41.667 0.49 0.00 45.40 3.58
4902 5365 4.214119 CAGACTTTGTGATTACACCCTGTG 59.786 45.833 0.00 0.00 45.40 3.66
4912 5375 6.962182 TCCATTAGGATCAGACTTTGTGATT 58.038 36.000 0.00 0.00 39.61 2.57
4983 5446 0.253044 GCCAACCTATGCTCACTGGA 59.747 55.000 0.00 0.00 0.00 3.86
4984 5447 0.035152 TGCCAACCTATGCTCACTGG 60.035 55.000 0.00 0.00 0.00 4.00
5049 5512 3.973206 ATTGTCGGGAGTACAACATGA 57.027 42.857 0.00 0.00 39.51 3.07
5064 5527 7.971168 TCTCTCACTTCGAAAGATCTTATTGTC 59.029 37.037 8.75 1.45 41.60 3.18
5065 5528 7.831753 TCTCTCACTTCGAAAGATCTTATTGT 58.168 34.615 8.75 1.44 41.60 2.71
5101 5564 3.059393 CCTCGTAATACATCTCGTACGCA 60.059 47.826 11.24 0.00 39.27 5.24
5118 5581 4.020573 TGGATAACAAACACTCATCCTCGT 60.021 41.667 0.00 0.00 36.83 4.18
5119 5582 4.503910 TGGATAACAAACACTCATCCTCG 58.496 43.478 0.00 0.00 36.83 4.63
5184 5650 9.423061 GTTTTGGTTCATTGCTAGAAAATACAT 57.577 29.630 0.00 0.00 0.00 2.29
5186 5652 9.129209 GAGTTTTGGTTCATTGCTAGAAAATAC 57.871 33.333 0.00 0.00 0.00 1.89
5187 5653 8.020819 CGAGTTTTGGTTCATTGCTAGAAAATA 58.979 33.333 0.00 0.00 0.00 1.40
5188 5654 6.863126 CGAGTTTTGGTTCATTGCTAGAAAAT 59.137 34.615 0.00 0.00 0.00 1.82
5269 5735 4.638304 AGACCACTACTGCACGTAAATTT 58.362 39.130 0.00 0.00 0.00 1.82
5307 5776 3.758554 AGCATACGAAAATTGGAGCAACT 59.241 39.130 0.00 0.00 0.00 3.16
5339 5808 4.022935 TGCTGAGCGAAACATGAATTCTTT 60.023 37.500 7.05 0.00 0.00 2.52
5346 5815 2.095617 CACAATGCTGAGCGAAACATGA 60.096 45.455 0.00 0.00 0.00 3.07
5355 5826 5.684626 GCACTAAATAATCACAATGCTGAGC 59.315 40.000 0.00 0.00 0.00 4.26
5404 5875 4.021894 AGACTGCATAACGAGAAACAGAGT 60.022 41.667 0.00 0.00 0.00 3.24
5412 5886 8.390354 CAAATTTTCATAGACTGCATAACGAGA 58.610 33.333 0.00 0.00 0.00 4.04
5469 5943 4.556699 GCTGAAATTCCATATGTTACGGGC 60.557 45.833 1.24 0.00 0.00 6.13
5471 5945 5.749596 TGCTGAAATTCCATATGTTACGG 57.250 39.130 1.24 0.00 0.00 4.02
5472 5946 6.634035 CACATGCTGAAATTCCATATGTTACG 59.366 38.462 1.24 0.00 0.00 3.18
5473 5947 7.706159 TCACATGCTGAAATTCCATATGTTAC 58.294 34.615 1.24 0.00 0.00 2.50
5488 5962 5.997129 TCTCAATGTACTTTTCACATGCTGA 59.003 36.000 0.00 0.00 36.74 4.26
5493 5967 9.520515 ACCTTTATCTCAATGTACTTTTCACAT 57.479 29.630 0.00 0.00 38.25 3.21
5563 6037 1.930908 GCATGCTTCAGACACCAGGC 61.931 60.000 11.37 0.00 0.00 4.85
5566 6040 0.953727 GTTGCATGCTTCAGACACCA 59.046 50.000 20.33 0.00 0.00 4.17
5574 6048 2.331194 AGCGAAAATGTTGCATGCTTC 58.669 42.857 20.33 11.81 0.00 3.86
5590 6064 2.707849 GGGTGGCGAACTAGAGCGA 61.708 63.158 11.95 2.49 0.00 4.93
5594 6068 0.320374 CACAAGGGTGGCGAACTAGA 59.680 55.000 0.00 0.00 41.45 2.43
5612 6086 4.040461 AGGAACCGAGAAAGATTTCTGACA 59.960 41.667 12.38 0.00 46.84 3.58
5631 6105 3.694566 TCTGATTCGTGAAGATCGAGGAA 59.305 43.478 0.00 0.00 38.52 3.36
5637 6111 5.595885 TGATCCTTCTGATTCGTGAAGATC 58.404 41.667 16.09 15.47 41.38 2.75
5645 6119 7.081526 ACTTGAAAATGATCCTTCTGATTCG 57.918 36.000 0.00 0.00 32.41 3.34
5698 6172 2.091555 AGCCAAAAAGTCAAGTACCCCA 60.092 45.455 0.00 0.00 0.00 4.96
5699 6173 2.594131 AGCCAAAAAGTCAAGTACCCC 58.406 47.619 0.00 0.00 0.00 4.95
5700 6174 7.556635 AGAATATAGCCAAAAAGTCAAGTACCC 59.443 37.037 0.00 0.00 0.00 3.69
5701 6175 8.507524 AGAATATAGCCAAAAAGTCAAGTACC 57.492 34.615 0.00 0.00 0.00 3.34
5705 6179 9.788960 GGTAAAGAATATAGCCAAAAAGTCAAG 57.211 33.333 0.00 0.00 0.00 3.02
5706 6180 8.745590 GGGTAAAGAATATAGCCAAAAAGTCAA 58.254 33.333 0.00 0.00 40.01 3.18
5707 6181 7.891183 TGGGTAAAGAATATAGCCAAAAAGTCA 59.109 33.333 2.22 0.00 45.28 3.41
5708 6182 8.288689 TGGGTAAAGAATATAGCCAAAAAGTC 57.711 34.615 2.22 0.00 45.28 3.01
5732 6210 7.982919 TGGAATAGGCTGAATTGAAATGAAATG 59.017 33.333 0.00 0.00 0.00 2.32
5744 6222 3.019564 GCACAGTTGGAATAGGCTGAAT 58.980 45.455 0.00 0.00 33.57 2.57
5813 6298 3.197790 CGCGGCCACATTCTCTGG 61.198 66.667 2.24 0.00 0.00 3.86
5814 6299 2.125552 TCGCGGCCACATTCTCTG 60.126 61.111 6.13 0.00 0.00 3.35
5815 6300 2.185350 CTCGCGGCCACATTCTCT 59.815 61.111 6.13 0.00 0.00 3.10
5816 6301 2.892425 CCTCGCGGCCACATTCTC 60.892 66.667 6.13 0.00 0.00 2.87
5817 6302 3.706373 ACCTCGCGGCCACATTCT 61.706 61.111 6.13 0.00 0.00 2.40
5847 6332 0.261696 AAAAGGCACCCCAGAAGTGT 59.738 50.000 0.00 0.00 37.56 3.55
5849 6334 0.261696 ACAAAAGGCACCCCAGAAGT 59.738 50.000 0.00 0.00 0.00 3.01
5850 6335 1.069049 CAACAAAAGGCACCCCAGAAG 59.931 52.381 0.00 0.00 0.00 2.85
5852 6337 0.032615 ACAACAAAAGGCACCCCAGA 60.033 50.000 0.00 0.00 0.00 3.86
5853 6338 0.104671 CACAACAAAAGGCACCCCAG 59.895 55.000 0.00 0.00 0.00 4.45
5854 6339 0.324738 TCACAACAAAAGGCACCCCA 60.325 50.000 0.00 0.00 0.00 4.96
5892 6387 1.136502 CGTCTTGTTTGCTTCGAGCTC 60.137 52.381 2.73 2.73 42.97 4.09
5919 6414 4.053469 TGGTAAGCCTTTTGTTTTCAGC 57.947 40.909 0.00 0.00 35.27 4.26
5936 6431 4.283978 TCGTTGGGATAGTTGTTCTTGGTA 59.716 41.667 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.