Multiple sequence alignment - TraesCS4B01G107100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G107100 chr4B 100.000 2528 0 0 1 2528 117004600 117007127 0.000000e+00 4669.0
1 TraesCS4B01G107100 chr4B 97.342 903 23 1 1626 2528 117012605 117013506 0.000000e+00 1533.0
2 TraesCS4B01G107100 chr4B 94.358 904 48 3 1626 2528 659310831 659309930 0.000000e+00 1384.0
3 TraesCS4B01G107100 chr4D 96.281 995 27 5 566 1554 82566631 82567621 0.000000e+00 1624.0
4 TraesCS4B01G107100 chr4D 79.750 400 38 26 40 435 82564073 82564433 1.500000e-62 250.0
5 TraesCS4B01G107100 chr4D 78.846 208 26 12 52 245 32419331 32419128 9.500000e-25 124.0
6 TraesCS4B01G107100 chr4D 90.698 43 3 1 340 381 461576786 461576744 3.510000e-04 56.5
7 TraesCS4B01G107100 chr2B 94.807 905 45 2 1625 2528 495243417 495244320 0.000000e+00 1410.0
8 TraesCS4B01G107100 chr2B 85.246 61 7 2 323 382 752479717 752479776 7.550000e-06 62.1
9 TraesCS4B01G107100 chr2B 100.000 30 0 0 350 379 634179982 634180011 3.510000e-04 56.5
10 TraesCS4B01G107100 chr7B 94.807 905 44 3 1626 2528 270146996 270146093 0.000000e+00 1408.0
11 TraesCS4B01G107100 chr7B 94.807 905 44 3 1626 2528 270153888 270152985 0.000000e+00 1408.0
12 TraesCS4B01G107100 chr7B 94.469 904 46 4 1626 2528 208351201 208350301 0.000000e+00 1389.0
13 TraesCS4B01G107100 chr7B 94.358 904 48 3 1626 2528 379422089 379422990 0.000000e+00 1384.0
14 TraesCS4B01G107100 chr5B 94.696 905 45 3 1626 2528 315338862 315339765 0.000000e+00 1402.0
15 TraesCS4B01G107100 chr3B 94.267 907 49 3 1624 2528 131596203 131597108 0.000000e+00 1384.0
16 TraesCS4B01G107100 chr3B 88.235 51 5 1 515 565 540372886 540372935 2.720000e-05 60.2
17 TraesCS4B01G107100 chr3B 100.000 28 0 0 354 381 700365703 700365676 5.000000e-03 52.8
18 TraesCS4B01G107100 chr1D 78.689 183 28 5 62 240 468962795 468962620 7.390000e-21 111.0
19 TraesCS4B01G107100 chr6A 76.847 203 30 9 52 240 277339446 277339247 5.760000e-17 99.0
20 TraesCS4B01G107100 chr3D 75.728 206 33 12 52 244 589732146 589732347 1.250000e-13 87.9
21 TraesCS4B01G107100 chr3D 96.970 33 0 1 349 381 363595730 363595761 1.000000e-03 54.7
22 TraesCS4B01G107100 chr7D 77.483 151 21 10 48 186 32722473 32722324 7.500000e-11 78.7
23 TraesCS4B01G107100 chr7D 100.000 33 0 0 348 380 118244924 118244892 7.550000e-06 62.1
24 TraesCS4B01G107100 chr3A 80.189 106 16 4 142 245 514232422 514232320 9.700000e-10 75.0
25 TraesCS4B01G107100 chr3A 93.750 48 3 0 515 562 445012611 445012658 3.490000e-09 73.1
26 TraesCS4B01G107100 chr6D 92.000 50 3 1 515 564 38034886 38034838 4.510000e-08 69.4
27 TraesCS4B01G107100 chr6D 89.796 49 4 1 515 563 416254315 416254268 7.550000e-06 62.1
28 TraesCS4B01G107100 chr5D 90.196 51 4 1 515 565 413387084 413387035 5.840000e-07 65.8
29 TraesCS4B01G107100 chrUn 90.698 43 3 1 340 381 100172400 100172358 3.510000e-04 56.5
30 TraesCS4B01G107100 chr2A 100.000 30 0 0 350 379 245703735 245703706 3.510000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G107100 chr4B 117004600 117007127 2527 False 4669 4669 100.0000 1 2528 1 chr4B.!!$F1 2527
1 TraesCS4B01G107100 chr4B 117012605 117013506 901 False 1533 1533 97.3420 1626 2528 1 chr4B.!!$F2 902
2 TraesCS4B01G107100 chr4B 659309930 659310831 901 True 1384 1384 94.3580 1626 2528 1 chr4B.!!$R1 902
3 TraesCS4B01G107100 chr4D 82564073 82567621 3548 False 937 1624 88.0155 40 1554 2 chr4D.!!$F1 1514
4 TraesCS4B01G107100 chr2B 495243417 495244320 903 False 1410 1410 94.8070 1625 2528 1 chr2B.!!$F1 903
5 TraesCS4B01G107100 chr7B 270146093 270146996 903 True 1408 1408 94.8070 1626 2528 1 chr7B.!!$R2 902
6 TraesCS4B01G107100 chr7B 270152985 270153888 903 True 1408 1408 94.8070 1626 2528 1 chr7B.!!$R3 902
7 TraesCS4B01G107100 chr7B 208350301 208351201 900 True 1389 1389 94.4690 1626 2528 1 chr7B.!!$R1 902
8 TraesCS4B01G107100 chr7B 379422089 379422990 901 False 1384 1384 94.3580 1626 2528 1 chr7B.!!$F1 902
9 TraesCS4B01G107100 chr5B 315338862 315339765 903 False 1402 1402 94.6960 1626 2528 1 chr5B.!!$F1 902
10 TraesCS4B01G107100 chr3B 131596203 131597108 905 False 1384 1384 94.2670 1624 2528 1 chr3B.!!$F1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 380 0.042131 TGTTATGGGACGGAGGGAGT 59.958 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 3631 0.039617 TGCGTGCAGGTATTTGTTGC 60.04 50.0 8.4 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.917541 TGTTAAGCTCGTGAAAGTTAAGG 57.082 39.130 0.00 0.00 0.00 2.69
25 26 4.212636 TGTTAAGCTCGTGAAAGTTAAGGC 59.787 41.667 0.00 0.00 0.00 4.35
26 27 2.841442 AGCTCGTGAAAGTTAAGGCT 57.159 45.000 0.00 0.00 0.00 4.58
27 28 2.689646 AGCTCGTGAAAGTTAAGGCTC 58.310 47.619 0.00 0.00 0.00 4.70
28 29 1.390463 GCTCGTGAAAGTTAAGGCTCG 59.610 52.381 0.00 0.00 0.00 5.03
29 30 1.390463 CTCGTGAAAGTTAAGGCTCGC 59.610 52.381 0.00 0.00 0.00 5.03
30 31 0.442699 CGTGAAAGTTAAGGCTCGCC 59.557 55.000 0.00 0.00 0.00 5.54
42 43 0.179119 GGCTCGCCTCGTTAAGCTTA 60.179 55.000 0.86 0.86 35.12 3.09
113 114 5.520288 TCACTAATGATCTAAAACGAGCTGC 59.480 40.000 0.00 0.00 0.00 5.25
137 138 8.508062 TGCTCGTGAAATTTATTAGCTTGTTTA 58.492 29.630 0.00 0.00 0.00 2.01
171 172 4.701651 AGCTGAGATCAATGATTGGCTA 57.298 40.909 5.20 0.00 0.00 3.93
187 188 7.988737 TGATTGGCTATGTTCATTAAGAAGTG 58.011 34.615 0.00 0.00 36.78 3.16
188 189 7.611467 TGATTGGCTATGTTCATTAAGAAGTGT 59.389 33.333 0.00 0.00 36.78 3.55
204 205 5.210715 AGAAGTGTACGTGAGTTTAACGAG 58.789 41.667 0.00 0.00 46.40 4.18
205 206 3.303406 AGTGTACGTGAGTTTAACGAGC 58.697 45.455 0.00 0.00 46.40 5.03
213 214 2.426024 TGAGTTTAACGAGCCGAGCTAT 59.574 45.455 1.50 0.00 39.88 2.97
215 216 3.187700 AGTTTAACGAGCCGAGCTATTG 58.812 45.455 1.50 0.00 39.88 1.90
216 217 3.119245 AGTTTAACGAGCCGAGCTATTGA 60.119 43.478 1.50 0.00 39.88 2.57
217 218 3.513680 TTAACGAGCCGAGCTATTGAA 57.486 42.857 1.50 0.00 39.88 2.69
218 219 2.604046 AACGAGCCGAGCTATTGAAT 57.396 45.000 1.50 0.00 39.88 2.57
219 220 1.858091 ACGAGCCGAGCTATTGAATG 58.142 50.000 1.50 0.00 39.88 2.67
220 221 0.510359 CGAGCCGAGCTATTGAATGC 59.490 55.000 0.00 0.00 39.88 3.56
221 222 1.871408 CGAGCCGAGCTATTGAATGCT 60.871 52.381 2.55 2.55 39.88 3.79
249 250 1.867865 CTCGTGAGCTATCGAGTGCTA 59.132 52.381 23.28 0.00 45.37 3.49
256 257 4.882427 TGAGCTATCGAGTGCTAGTTAAGT 59.118 41.667 13.76 0.00 39.91 2.24
263 264 3.436496 GAGTGCTAGTTAAGTTCGCGAT 58.564 45.455 10.88 0.00 0.00 4.58
267 268 5.008811 AGTGCTAGTTAAGTTCGCGATCTAT 59.991 40.000 19.35 12.13 0.00 1.98
284 285 3.686016 TCTATGAGCTTTTGGTTCACCC 58.314 45.455 0.00 0.00 37.96 4.61
285 286 2.683211 ATGAGCTTTTGGTTCACCCT 57.317 45.000 0.00 0.00 37.96 4.34
286 287 1.981256 TGAGCTTTTGGTTCACCCTC 58.019 50.000 0.00 0.00 30.30 4.30
289 290 1.494721 AGCTTTTGGTTCACCCTCTCA 59.505 47.619 0.00 0.00 34.29 3.27
290 291 2.108952 AGCTTTTGGTTCACCCTCTCAT 59.891 45.455 0.00 0.00 34.29 2.90
291 292 2.489722 GCTTTTGGTTCACCCTCTCATC 59.510 50.000 0.00 0.00 34.29 2.92
292 293 2.879103 TTTGGTTCACCCTCTCATCC 57.121 50.000 0.00 0.00 34.29 3.51
293 294 2.044793 TTGGTTCACCCTCTCATCCT 57.955 50.000 0.00 0.00 34.29 3.24
301 304 1.062810 ACCCTCTCATCCTCTACACCC 60.063 57.143 0.00 0.00 0.00 4.61
306 309 1.101635 TCATCCTCTACACCCGCTCG 61.102 60.000 0.00 0.00 0.00 5.03
350 353 9.840427 TTCTTCTAACAATTATAGCTTGCAAAC 57.160 29.630 0.00 0.00 0.00 2.93
351 354 8.175069 TCTTCTAACAATTATAGCTTGCAAACG 58.825 33.333 0.00 0.00 0.00 3.60
352 355 7.603963 TCTAACAATTATAGCTTGCAAACGA 57.396 32.000 0.00 0.00 0.00 3.85
353 356 8.208718 TCTAACAATTATAGCTTGCAAACGAT 57.791 30.769 0.00 0.02 0.00 3.73
354 357 8.335356 TCTAACAATTATAGCTTGCAAACGATC 58.665 33.333 0.00 0.00 0.00 3.69
356 359 7.088589 ACAATTATAGCTTGCAAACGATCTT 57.911 32.000 0.00 0.00 0.00 2.40
359 362 9.110617 CAATTATAGCTTGCAAACGATCTTATG 57.889 33.333 0.00 0.00 0.00 1.90
361 364 6.683974 ATAGCTTGCAAACGATCTTATGTT 57.316 33.333 0.00 0.00 0.00 2.71
363 366 6.683974 AGCTTGCAAACGATCTTATGTTAT 57.316 33.333 0.00 0.00 0.00 1.89
365 368 5.682862 GCTTGCAAACGATCTTATGTTATGG 59.317 40.000 0.00 0.00 0.00 2.74
366 369 5.749596 TGCAAACGATCTTATGTTATGGG 57.250 39.130 0.00 0.00 0.00 4.00
367 370 5.432645 TGCAAACGATCTTATGTTATGGGA 58.567 37.500 0.00 0.00 0.00 4.37
368 371 5.295787 TGCAAACGATCTTATGTTATGGGAC 59.704 40.000 0.00 0.00 0.00 4.46
369 372 5.558273 GCAAACGATCTTATGTTATGGGACG 60.558 44.000 0.00 0.00 0.00 4.79
370 373 4.252971 ACGATCTTATGTTATGGGACGG 57.747 45.455 0.00 0.00 0.00 4.79
371 374 3.893200 ACGATCTTATGTTATGGGACGGA 59.107 43.478 0.00 0.00 0.00 4.69
372 375 4.022242 ACGATCTTATGTTATGGGACGGAG 60.022 45.833 0.00 0.00 0.00 4.63
373 376 4.618460 CGATCTTATGTTATGGGACGGAGG 60.618 50.000 0.00 0.00 0.00 4.30
375 378 2.779429 TATGTTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
376 379 1.424638 ATGTTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
377 380 0.042131 TGTTATGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
378 381 1.288633 TGTTATGGGACGGAGGGAGTA 59.711 52.381 0.00 0.00 0.00 2.59
379 382 2.090943 TGTTATGGGACGGAGGGAGTAT 60.091 50.000 0.00 0.00 0.00 2.12
380 383 2.970640 GTTATGGGACGGAGGGAGTATT 59.029 50.000 0.00 0.00 0.00 1.89
381 384 4.154942 GTTATGGGACGGAGGGAGTATTA 58.845 47.826 0.00 0.00 0.00 0.98
382 385 2.376695 TGGGACGGAGGGAGTATTAG 57.623 55.000 0.00 0.00 0.00 1.73
383 386 1.572415 TGGGACGGAGGGAGTATTAGT 59.428 52.381 0.00 0.00 0.00 2.24
384 387 1.962100 GGGACGGAGGGAGTATTAGTG 59.038 57.143 0.00 0.00 0.00 2.74
385 388 2.664015 GGACGGAGGGAGTATTAGTGT 58.336 52.381 0.00 0.00 0.00 3.55
386 389 2.361438 GGACGGAGGGAGTATTAGTGTG 59.639 54.545 0.00 0.00 0.00 3.82
387 390 3.285484 GACGGAGGGAGTATTAGTGTGA 58.715 50.000 0.00 0.00 0.00 3.58
396 399 5.519206 GGGAGTATTAGTGTGATCGTGTTTC 59.481 44.000 0.00 0.00 0.00 2.78
429 432 4.524714 TGTTCAACTGGTTTTTGAGGTTCA 59.475 37.500 0.00 0.00 34.50 3.18
435 438 6.844097 ACTGGTTTTTGAGGTTCAGTAAAA 57.156 33.333 0.00 0.00 34.24 1.52
436 439 7.234661 ACTGGTTTTTGAGGTTCAGTAAAAA 57.765 32.000 0.00 0.00 34.24 1.94
458 461 6.724893 AAAAATTATACATGCCCTACCCAC 57.275 37.500 0.00 0.00 0.00 4.61
459 462 5.396057 AAATTATACATGCCCTACCCACA 57.604 39.130 0.00 0.00 0.00 4.17
460 463 3.849563 TTATACATGCCCTACCCACAC 57.150 47.619 0.00 0.00 0.00 3.82
461 464 1.893315 ATACATGCCCTACCCACACT 58.107 50.000 0.00 0.00 0.00 3.55
462 465 2.553911 TACATGCCCTACCCACACTA 57.446 50.000 0.00 0.00 0.00 2.74
470 1386 6.368779 TGCCCTACCCACACTATATTTATC 57.631 41.667 0.00 0.00 0.00 1.75
473 1389 5.105064 CCCTACCCACACTATATTTATCCGG 60.105 48.000 0.00 0.00 0.00 5.14
493 1409 8.830915 ATCCGGTTCTGACTATATCATATCTT 57.169 34.615 0.00 0.00 36.48 2.40
494 1410 8.282455 TCCGGTTCTGACTATATCATATCTTC 57.718 38.462 0.00 0.00 36.48 2.87
495 1411 7.339721 TCCGGTTCTGACTATATCATATCTTCC 59.660 40.741 0.00 0.00 36.48 3.46
496 1412 7.122799 CCGGTTCTGACTATATCATATCTTCCA 59.877 40.741 0.00 0.00 36.48 3.53
513 1429 6.964807 TCTTCCATATTTCATTCCACATGG 57.035 37.500 0.00 0.00 35.33 3.66
516 1432 5.210430 TCCATATTTCATTCCACATGGCTT 58.790 37.500 0.00 0.00 34.26 4.35
517 1433 5.069383 TCCATATTTCATTCCACATGGCTTG 59.931 40.000 0.00 0.00 34.26 4.01
518 1434 5.069383 CCATATTTCATTCCACATGGCTTGA 59.931 40.000 7.45 0.00 34.44 3.02
519 1435 6.407187 CCATATTTCATTCCACATGGCTTGAA 60.407 38.462 7.45 9.85 35.48 2.69
520 1436 4.952071 TTTCATTCCACATGGCTTGAAA 57.048 36.364 17.29 17.29 40.32 2.69
521 1437 5.486735 TTTCATTCCACATGGCTTGAAAT 57.513 34.783 17.29 1.82 39.06 2.17
522 1438 6.602410 TTTCATTCCACATGGCTTGAAATA 57.398 33.333 17.29 4.54 39.06 1.40
523 1439 6.602410 TTCATTCCACATGGCTTGAAATAA 57.398 33.333 7.45 0.00 34.85 1.40
526 1442 5.389859 TTCCACATGGCTTGAAATAAGTG 57.610 39.130 7.45 0.00 34.44 3.16
528 2542 3.763360 CCACATGGCTTGAAATAAGTGGA 59.237 43.478 7.45 0.00 46.12 4.02
538 2552 8.994170 GGCTTGAAATAAGTGGATAGTTATCTC 58.006 37.037 0.00 0.00 32.53 2.75
613 2683 9.403110 CAGCAGATACATAGAAAATATTTTGCC 57.597 33.333 17.98 4.97 0.00 4.52
633 2705 3.514645 CCATCAAACAGTGCCTAAATGC 58.485 45.455 0.00 0.00 0.00 3.56
645 2717 1.889829 CCTAAATGCGTGTTTTCCCCA 59.110 47.619 0.00 0.00 0.00 4.96
646 2718 2.094752 CCTAAATGCGTGTTTTCCCCAG 60.095 50.000 0.00 0.00 0.00 4.45
690 2763 2.202663 TGCTGACGCAGATCGAGC 60.203 61.111 10.46 0.00 42.25 5.03
704 2777 1.300620 CGAGCGGTCCAACTTCACA 60.301 57.895 9.39 0.00 0.00 3.58
785 2858 4.378774 CTCAATCCTATCAGCCAGAACAG 58.621 47.826 0.00 0.00 0.00 3.16
786 2859 2.877168 CAATCCTATCAGCCAGAACAGC 59.123 50.000 0.00 0.00 0.00 4.40
787 2860 1.871418 TCCTATCAGCCAGAACAGCT 58.129 50.000 0.00 0.00 42.70 4.24
808 2881 2.366584 CCGCACATGCACGCAAAAG 61.367 57.895 4.49 0.00 42.21 2.27
809 2882 1.658102 CGCACATGCACGCAAAAGT 60.658 52.632 4.49 0.00 42.21 2.66
903 2979 1.800586 CACCAACCTGTCACGATGAAG 59.199 52.381 0.00 0.00 0.00 3.02
1015 3091 2.359797 CCATGGCCATCCACCACA 59.640 61.111 17.61 0.00 46.92 4.17
1115 3191 4.771356 CGACATCGTGACGGCGGT 62.771 66.667 13.24 0.00 32.33 5.68
1224 3300 1.583967 CATCGACGACGCTCTCACC 60.584 63.158 0.00 0.00 39.58 4.02
1266 3342 4.899239 GTCATCGGGAGGGCGCAG 62.899 72.222 10.83 0.00 0.00 5.18
1326 3402 2.789917 CTCAGCGCCAACATGCTC 59.210 61.111 2.29 0.00 40.03 4.26
1410 3486 4.021925 GTCAGGGAGCTGCCGGTT 62.022 66.667 22.83 0.97 37.63 4.44
1487 3563 1.888172 CGTACAACGCCACCACCAA 60.888 57.895 0.00 0.00 33.65 3.67
1533 3609 2.742372 CTGCACGTGTAGGCACCC 60.742 66.667 24.15 2.19 42.39 4.61
1554 3630 0.299300 GCGCGCACGTACATTGATTA 59.701 50.000 29.10 0.00 42.83 1.75
1555 3631 1.653679 GCGCGCACGTACATTGATTAG 60.654 52.381 29.10 0.00 42.83 1.73
1556 3632 1.653679 CGCGCACGTACATTGATTAGC 60.654 52.381 8.75 0.00 33.53 3.09
1557 3633 1.326245 GCGCACGTACATTGATTAGCA 59.674 47.619 0.30 0.00 0.00 3.49
1558 3634 2.222931 GCGCACGTACATTGATTAGCAA 60.223 45.455 0.30 0.00 41.53 3.91
1559 3635 3.342269 CGCACGTACATTGATTAGCAAC 58.658 45.455 0.00 0.00 39.78 4.17
1560 3636 3.181525 CGCACGTACATTGATTAGCAACA 60.182 43.478 0.00 0.00 39.78 3.33
1561 3637 4.667922 CGCACGTACATTGATTAGCAACAA 60.668 41.667 0.00 0.00 39.78 2.83
1562 3638 5.150683 GCACGTACATTGATTAGCAACAAA 58.849 37.500 0.00 0.00 39.78 2.83
1563 3639 5.799936 GCACGTACATTGATTAGCAACAAAT 59.200 36.000 0.00 0.00 39.78 2.32
1564 3640 6.964370 GCACGTACATTGATTAGCAACAAATA 59.036 34.615 0.00 0.00 39.78 1.40
1565 3641 7.044966 GCACGTACATTGATTAGCAACAAATAC 60.045 37.037 0.00 0.00 39.78 1.89
1566 3642 7.428183 CACGTACATTGATTAGCAACAAATACC 59.572 37.037 0.00 0.00 39.78 2.73
1567 3643 7.335924 ACGTACATTGATTAGCAACAAATACCT 59.664 33.333 0.00 0.00 39.78 3.08
1568 3644 7.639850 CGTACATTGATTAGCAACAAATACCTG 59.360 37.037 0.00 0.00 39.78 4.00
1569 3645 6.332630 ACATTGATTAGCAACAAATACCTGC 58.667 36.000 0.00 0.00 39.78 4.85
1570 3646 5.973899 TTGATTAGCAACAAATACCTGCA 57.026 34.783 0.00 0.00 38.58 4.41
1571 3647 5.309323 TGATTAGCAACAAATACCTGCAC 57.691 39.130 0.00 0.00 38.58 4.57
1572 3648 3.822594 TTAGCAACAAATACCTGCACG 57.177 42.857 0.00 0.00 38.58 5.34
1573 3649 0.240945 AGCAACAAATACCTGCACGC 59.759 50.000 0.00 0.00 38.58 5.34
1574 3650 0.039617 GCAACAAATACCTGCACGCA 60.040 50.000 0.00 0.00 36.09 5.24
1575 3651 1.685302 CAACAAATACCTGCACGCAC 58.315 50.000 0.00 0.00 0.00 5.34
1576 3652 0.237235 AACAAATACCTGCACGCACG 59.763 50.000 0.00 0.00 0.00 5.34
1577 3653 0.882927 ACAAATACCTGCACGCACGT 60.883 50.000 0.00 0.00 0.00 4.49
1578 3654 0.237235 CAAATACCTGCACGCACGTT 59.763 50.000 0.00 0.00 0.00 3.99
1579 3655 0.515564 AAATACCTGCACGCACGTTC 59.484 50.000 0.00 0.00 0.00 3.95
1580 3656 1.296056 AATACCTGCACGCACGTTCC 61.296 55.000 0.00 0.00 0.00 3.62
1583 3659 3.767230 CTGCACGCACGTTCCGAG 61.767 66.667 11.82 5.56 0.00 4.63
1586 3662 2.126071 CACGCACGTTCCGAGGAT 60.126 61.111 11.82 0.00 0.00 3.24
1587 3663 2.158959 CACGCACGTTCCGAGGATC 61.159 63.158 11.82 0.00 0.00 3.36
1588 3664 2.582498 CGCACGTTCCGAGGATCC 60.582 66.667 2.48 2.48 0.00 3.36
1589 3665 2.202892 GCACGTTCCGAGGATCCC 60.203 66.667 8.55 0.00 0.00 3.85
1590 3666 2.104331 CACGTTCCGAGGATCCCG 59.896 66.667 8.55 11.78 0.00 5.14
1591 3667 3.834799 ACGTTCCGAGGATCCCGC 61.835 66.667 8.55 0.00 0.00 6.13
1592 3668 4.587189 CGTTCCGAGGATCCCGCC 62.587 72.222 8.55 0.00 0.00 6.13
1593 3669 4.587189 GTTCCGAGGATCCCGCCG 62.587 72.222 8.55 9.90 0.00 6.46
1594 3670 4.826404 TTCCGAGGATCCCGCCGA 62.826 66.667 17.20 8.34 0.00 5.54
1595 3671 4.826404 TCCGAGGATCCCGCCGAA 62.826 66.667 17.20 0.00 0.00 4.30
1596 3672 3.616721 CCGAGGATCCCGCCGAAT 61.617 66.667 17.20 0.00 0.00 3.34
1597 3673 2.049063 CGAGGATCCCGCCGAATC 60.049 66.667 8.55 0.00 0.00 2.52
1598 3674 2.049063 GAGGATCCCGCCGAATCG 60.049 66.667 8.55 0.00 0.00 3.34
1608 3684 2.436646 CCGAATCGGCTGCCACTT 60.437 61.111 20.29 10.96 41.17 3.16
1609 3685 2.753966 CCGAATCGGCTGCCACTTG 61.754 63.158 20.29 5.75 41.17 3.16
1610 3686 2.486966 GAATCGGCTGCCACTTGC 59.513 61.111 20.29 0.00 41.77 4.01
1611 3687 3.056313 GAATCGGCTGCCACTTGCC 62.056 63.158 20.29 0.00 45.25 4.52
1652 3728 1.226773 CCCGATTCGACCGTACACC 60.227 63.158 7.83 0.00 0.00 4.16
1669 3745 6.017523 CCGTACACCAATCATACATGCAAATA 60.018 38.462 0.00 0.00 0.00 1.40
1700 3776 0.902531 GATCAGGGACTCACGGGAAA 59.097 55.000 0.00 0.00 34.60 3.13
1712 3788 5.253330 ACTCACGGGAAAATATCACAACAT 58.747 37.500 0.00 0.00 0.00 2.71
1792 3871 5.423610 AGGGCTCAAATACATAGCTCGATAT 59.576 40.000 0.00 0.00 41.74 1.63
1922 4004 2.245287 CCTGGGACCTCCTAACTACTCT 59.755 54.545 0.00 0.00 36.20 3.24
1969 4051 1.105167 CATCCATCAGCGGTGGCATT 61.105 55.000 15.67 0.00 43.41 3.56
1971 4053 0.254462 TCCATCAGCGGTGGCATTTA 59.746 50.000 15.67 0.00 43.41 1.40
1983 4065 1.077005 TGGCATTTAGCTCCAAGGGTT 59.923 47.619 0.00 0.00 44.79 4.11
2273 4356 6.648879 ACAAGCATGTTGTAACATTAAGGT 57.351 33.333 7.48 0.87 46.95 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.363473 CCTTAACTTTCACGAGCTTAACAAG 58.637 40.000 0.00 0.00 0.00 3.16
1 2 5.277634 GCCTTAACTTTCACGAGCTTAACAA 60.278 40.000 0.00 0.00 0.00 2.83
2 3 4.212636 GCCTTAACTTTCACGAGCTTAACA 59.787 41.667 0.00 0.00 0.00 2.41
3 4 4.451435 AGCCTTAACTTTCACGAGCTTAAC 59.549 41.667 0.00 0.00 0.00 2.01
4 5 4.638304 AGCCTTAACTTTCACGAGCTTAA 58.362 39.130 0.00 0.00 0.00 1.85
5 6 4.243270 GAGCCTTAACTTTCACGAGCTTA 58.757 43.478 0.00 0.00 0.00 3.09
6 7 3.067833 GAGCCTTAACTTTCACGAGCTT 58.932 45.455 0.00 0.00 0.00 3.74
7 8 2.689646 GAGCCTTAACTTTCACGAGCT 58.310 47.619 0.00 0.00 0.00 4.09
8 9 1.390463 CGAGCCTTAACTTTCACGAGC 59.610 52.381 0.00 0.00 0.00 5.03
9 10 1.390463 GCGAGCCTTAACTTTCACGAG 59.610 52.381 0.00 0.00 0.00 4.18
10 11 1.425412 GCGAGCCTTAACTTTCACGA 58.575 50.000 0.00 0.00 0.00 4.35
11 12 0.442699 GGCGAGCCTTAACTTTCACG 59.557 55.000 6.90 0.00 0.00 4.35
12 13 1.809684 AGGCGAGCCTTAACTTTCAC 58.190 50.000 11.42 0.00 45.70 3.18
23 24 0.179119 TAAGCTTAACGAGGCGAGCC 60.179 55.000 2.97 5.89 35.79 4.70
24 25 1.854227 ATAAGCTTAACGAGGCGAGC 58.146 50.000 10.85 0.00 35.42 5.03
25 26 5.562705 CTTAATAAGCTTAACGAGGCGAG 57.437 43.478 10.85 0.00 0.00 5.03
167 168 6.534079 ACGTACACTTCTTAATGAACATAGCC 59.466 38.462 0.00 0.00 0.00 3.93
171 172 7.152645 ACTCACGTACACTTCTTAATGAACAT 58.847 34.615 0.00 0.00 0.00 2.71
187 188 1.645751 CGGCTCGTTAAACTCACGTAC 59.354 52.381 0.00 0.00 38.81 3.67
188 189 1.535028 TCGGCTCGTTAAACTCACGTA 59.465 47.619 0.00 0.00 38.81 3.57
230 231 1.867865 CTAGCACTCGATAGCTCACGA 59.132 52.381 14.13 13.07 42.05 4.35
231 232 1.600013 ACTAGCACTCGATAGCTCACG 59.400 52.381 14.13 0.00 42.05 4.35
232 233 3.701532 AACTAGCACTCGATAGCTCAC 57.298 47.619 14.13 0.00 42.05 3.51
233 234 4.882427 ACTTAACTAGCACTCGATAGCTCA 59.118 41.667 14.13 2.77 42.05 4.26
234 235 5.427036 ACTTAACTAGCACTCGATAGCTC 57.573 43.478 14.13 0.00 42.05 4.09
235 236 5.504337 CGAACTTAACTAGCACTCGATAGCT 60.504 44.000 14.95 14.95 44.55 3.32
236 237 4.671516 CGAACTTAACTAGCACTCGATAGC 59.328 45.833 1.30 1.30 34.32 2.97
237 238 4.671516 GCGAACTTAACTAGCACTCGATAG 59.328 45.833 0.00 0.00 37.15 2.08
238 239 4.595116 GCGAACTTAACTAGCACTCGATA 58.405 43.478 0.00 0.00 0.00 2.92
239 240 3.436496 GCGAACTTAACTAGCACTCGAT 58.564 45.455 0.00 0.00 0.00 3.59
240 241 2.726989 CGCGAACTTAACTAGCACTCGA 60.727 50.000 0.00 0.00 0.00 4.04
241 242 1.578023 CGCGAACTTAACTAGCACTCG 59.422 52.381 0.00 0.00 0.00 4.18
249 250 4.036971 AGCTCATAGATCGCGAACTTAACT 59.963 41.667 24.31 11.76 0.00 2.24
256 257 2.866156 CCAAAAGCTCATAGATCGCGAA 59.134 45.455 15.24 0.00 0.00 4.70
263 264 3.330701 AGGGTGAACCAAAAGCTCATAGA 59.669 43.478 1.16 0.00 43.89 1.98
267 268 1.494721 AGAGGGTGAACCAAAAGCTCA 59.505 47.619 1.16 0.00 43.89 4.26
284 285 0.671251 GCGGGTGTAGAGGATGAGAG 59.329 60.000 0.00 0.00 0.00 3.20
285 286 0.259065 AGCGGGTGTAGAGGATGAGA 59.741 55.000 0.00 0.00 0.00 3.27
286 287 0.671251 GAGCGGGTGTAGAGGATGAG 59.329 60.000 0.00 0.00 0.00 2.90
289 290 2.491022 GCGAGCGGGTGTAGAGGAT 61.491 63.158 0.00 0.00 0.00 3.24
290 291 3.138798 GCGAGCGGGTGTAGAGGA 61.139 66.667 0.00 0.00 0.00 3.71
291 292 2.501223 TTTGCGAGCGGGTGTAGAGG 62.501 60.000 0.00 0.00 0.00 3.69
292 293 1.080093 TTTGCGAGCGGGTGTAGAG 60.080 57.895 0.00 0.00 0.00 2.43
293 294 1.373748 GTTTGCGAGCGGGTGTAGA 60.374 57.895 0.00 0.00 0.00 2.59
301 304 1.016130 AGGATGAGTGTTTGCGAGCG 61.016 55.000 0.00 0.00 0.00 5.03
306 309 7.150783 AGAAGAAATAAGGATGAGTGTTTGC 57.849 36.000 0.00 0.00 0.00 3.68
338 341 6.683974 AACATAAGATCGTTTGCAAGCTAT 57.316 33.333 11.70 5.86 0.00 2.97
341 344 5.682862 CCATAACATAAGATCGTTTGCAAGC 59.317 40.000 2.75 2.75 0.00 4.01
342 345 6.038161 TCCCATAACATAAGATCGTTTGCAAG 59.962 38.462 0.00 0.00 0.00 4.01
343 346 5.883115 TCCCATAACATAAGATCGTTTGCAA 59.117 36.000 0.00 0.00 0.00 4.08
344 347 5.295787 GTCCCATAACATAAGATCGTTTGCA 59.704 40.000 0.00 0.00 0.00 4.08
345 348 5.558273 CGTCCCATAACATAAGATCGTTTGC 60.558 44.000 0.00 0.00 0.00 3.68
346 349 5.050363 CCGTCCCATAACATAAGATCGTTTG 60.050 44.000 0.00 0.00 0.00 2.93
347 350 5.054477 CCGTCCCATAACATAAGATCGTTT 58.946 41.667 0.00 0.00 0.00 3.60
348 351 4.342951 TCCGTCCCATAACATAAGATCGTT 59.657 41.667 0.00 0.00 0.00 3.85
349 352 3.893200 TCCGTCCCATAACATAAGATCGT 59.107 43.478 0.00 0.00 0.00 3.73
350 353 4.486090 CTCCGTCCCATAACATAAGATCG 58.514 47.826 0.00 0.00 0.00 3.69
351 354 4.322801 CCCTCCGTCCCATAACATAAGATC 60.323 50.000 0.00 0.00 0.00 2.75
352 355 3.583086 CCCTCCGTCCCATAACATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
353 356 2.969950 CCCTCCGTCCCATAACATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
354 357 2.969950 TCCCTCCGTCCCATAACATAAG 59.030 50.000 0.00 0.00 0.00 1.73
356 359 2.090943 ACTCCCTCCGTCCCATAACATA 60.091 50.000 0.00 0.00 0.00 2.29
359 362 2.077687 TACTCCCTCCGTCCCATAAC 57.922 55.000 0.00 0.00 0.00 1.89
361 364 3.400322 ACTAATACTCCCTCCGTCCCATA 59.600 47.826 0.00 0.00 0.00 2.74
363 366 1.572415 ACTAATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
365 368 2.361438 CACACTAATACTCCCTCCGTCC 59.639 54.545 0.00 0.00 0.00 4.79
366 369 3.285484 TCACACTAATACTCCCTCCGTC 58.715 50.000 0.00 0.00 0.00 4.79
367 370 3.377253 TCACACTAATACTCCCTCCGT 57.623 47.619 0.00 0.00 0.00 4.69
368 371 3.058155 CGATCACACTAATACTCCCTCCG 60.058 52.174 0.00 0.00 0.00 4.63
369 372 3.890147 ACGATCACACTAATACTCCCTCC 59.110 47.826 0.00 0.00 0.00 4.30
370 373 4.338682 ACACGATCACACTAATACTCCCTC 59.661 45.833 0.00 0.00 0.00 4.30
371 374 4.279145 ACACGATCACACTAATACTCCCT 58.721 43.478 0.00 0.00 0.00 4.20
372 375 4.650754 ACACGATCACACTAATACTCCC 57.349 45.455 0.00 0.00 0.00 4.30
373 376 5.519206 GGAAACACGATCACACTAATACTCC 59.481 44.000 0.00 0.00 0.00 3.85
375 378 6.100004 CAGGAAACACGATCACACTAATACT 58.900 40.000 0.00 0.00 0.00 2.12
376 379 5.867716 ACAGGAAACACGATCACACTAATAC 59.132 40.000 0.00 0.00 0.00 1.89
377 380 6.032956 ACAGGAAACACGATCACACTAATA 57.967 37.500 0.00 0.00 0.00 0.98
378 381 4.894784 ACAGGAAACACGATCACACTAAT 58.105 39.130 0.00 0.00 0.00 1.73
379 382 4.330944 ACAGGAAACACGATCACACTAA 57.669 40.909 0.00 0.00 0.00 2.24
380 383 5.654603 ATACAGGAAACACGATCACACTA 57.345 39.130 0.00 0.00 0.00 2.74
381 384 2.910688 ACAGGAAACACGATCACACT 57.089 45.000 0.00 0.00 0.00 3.55
382 385 6.903883 ATAATACAGGAAACACGATCACAC 57.096 37.500 0.00 0.00 0.00 3.82
383 386 6.876789 ACAATAATACAGGAAACACGATCACA 59.123 34.615 0.00 0.00 0.00 3.58
384 387 7.303634 ACAATAATACAGGAAACACGATCAC 57.696 36.000 0.00 0.00 0.00 3.06
385 388 7.604545 TGAACAATAATACAGGAAACACGATCA 59.395 33.333 0.00 0.00 0.00 2.92
386 389 7.970384 TGAACAATAATACAGGAAACACGATC 58.030 34.615 0.00 0.00 0.00 3.69
387 390 7.915293 TGAACAATAATACAGGAAACACGAT 57.085 32.000 0.00 0.00 0.00 3.73
396 399 8.977505 CAAAAACCAGTTGAACAATAATACAGG 58.022 33.333 0.00 0.00 0.00 4.00
435 438 6.097696 GTGTGGGTAGGGCATGTATAATTTTT 59.902 38.462 0.00 0.00 0.00 1.94
436 439 5.596772 GTGTGGGTAGGGCATGTATAATTTT 59.403 40.000 0.00 0.00 0.00 1.82
437 440 5.103686 AGTGTGGGTAGGGCATGTATAATTT 60.104 40.000 0.00 0.00 0.00 1.82
438 441 4.415512 AGTGTGGGTAGGGCATGTATAATT 59.584 41.667 0.00 0.00 0.00 1.40
439 442 3.980698 AGTGTGGGTAGGGCATGTATAAT 59.019 43.478 0.00 0.00 0.00 1.28
440 443 3.389866 AGTGTGGGTAGGGCATGTATAA 58.610 45.455 0.00 0.00 0.00 0.98
441 444 3.054779 AGTGTGGGTAGGGCATGTATA 57.945 47.619 0.00 0.00 0.00 1.47
442 445 1.893315 AGTGTGGGTAGGGCATGTAT 58.107 50.000 0.00 0.00 0.00 2.29
443 446 2.553911 TAGTGTGGGTAGGGCATGTA 57.446 50.000 0.00 0.00 0.00 2.29
444 447 1.893315 ATAGTGTGGGTAGGGCATGT 58.107 50.000 0.00 0.00 0.00 3.21
445 448 4.640771 AATATAGTGTGGGTAGGGCATG 57.359 45.455 0.00 0.00 0.00 4.06
446 449 6.069615 GGATAAATATAGTGTGGGTAGGGCAT 60.070 42.308 0.00 0.00 0.00 4.40
447 450 5.249852 GGATAAATATAGTGTGGGTAGGGCA 59.750 44.000 0.00 0.00 0.00 5.36
449 452 5.105064 CCGGATAAATATAGTGTGGGTAGGG 60.105 48.000 0.00 0.00 0.00 3.53
450 453 5.482878 ACCGGATAAATATAGTGTGGGTAGG 59.517 44.000 9.46 0.00 0.00 3.18
451 454 6.600882 ACCGGATAAATATAGTGTGGGTAG 57.399 41.667 9.46 0.00 0.00 3.18
452 455 6.783977 AGAACCGGATAAATATAGTGTGGGTA 59.216 38.462 9.46 0.00 0.00 3.69
453 456 5.605488 AGAACCGGATAAATATAGTGTGGGT 59.395 40.000 9.46 0.00 0.00 4.51
455 458 6.645415 GTCAGAACCGGATAAATATAGTGTGG 59.355 42.308 9.46 0.00 0.00 4.17
456 459 7.434492 AGTCAGAACCGGATAAATATAGTGTG 58.566 38.462 9.46 0.00 0.00 3.82
457 460 7.598759 AGTCAGAACCGGATAAATATAGTGT 57.401 36.000 9.46 0.00 0.00 3.55
470 1386 7.122799 TGGAAGATATGATATAGTCAGAACCGG 59.877 40.741 0.00 0.00 40.92 5.28
493 1409 4.806892 AGCCATGTGGAATGAAATATGGA 58.193 39.130 2.55 0.00 37.79 3.41
494 1410 5.069383 TCAAGCCATGTGGAATGAAATATGG 59.931 40.000 2.55 0.00 38.42 2.74
495 1411 6.151663 TCAAGCCATGTGGAATGAAATATG 57.848 37.500 2.55 0.00 37.39 1.78
496 1412 6.795144 TTCAAGCCATGTGGAATGAAATAT 57.205 33.333 13.94 0.00 37.93 1.28
499 1415 4.952071 TTTCAAGCCATGTGGAATGAAA 57.048 36.364 19.80 19.80 43.04 2.69
500 1416 6.211184 ACTTATTTCAAGCCATGTGGAATGAA 59.789 34.615 12.88 12.88 38.59 2.57
502 1418 5.808540 CACTTATTTCAAGCCATGTGGAATG 59.191 40.000 2.55 0.89 37.39 2.67
503 1419 5.105228 CCACTTATTTCAAGCCATGTGGAAT 60.105 40.000 2.55 0.00 44.40 3.01
504 1420 4.220382 CCACTTATTTCAAGCCATGTGGAA 59.780 41.667 2.55 0.00 44.40 3.53
505 1421 3.763360 CCACTTATTTCAAGCCATGTGGA 59.237 43.478 2.55 0.00 44.40 4.02
506 1422 3.763360 TCCACTTATTTCAAGCCATGTGG 59.237 43.478 0.00 0.00 43.39 4.17
507 1423 5.587388 ATCCACTTATTTCAAGCCATGTG 57.413 39.130 0.00 0.00 0.00 3.21
509 1425 6.949352 ACTATCCACTTATTTCAAGCCATG 57.051 37.500 0.00 0.00 0.00 3.66
511 1427 8.494433 AGATAACTATCCACTTATTTCAAGCCA 58.506 33.333 0.00 0.00 33.17 4.75
512 1428 8.910351 AGATAACTATCCACTTATTTCAAGCC 57.090 34.615 0.00 0.00 33.17 4.35
513 1429 9.547753 TGAGATAACTATCCACTTATTTCAAGC 57.452 33.333 0.00 0.00 33.17 4.01
560 2574 6.709018 CCTTACGGTGGGATGAATATTTTT 57.291 37.500 0.00 0.00 0.00 1.94
613 2683 3.173599 CGCATTTAGGCACTGTTTGATG 58.826 45.455 0.00 0.00 41.52 3.07
622 2694 2.324860 GGAAAACACGCATTTAGGCAC 58.675 47.619 0.00 0.00 0.00 5.01
623 2695 1.271102 GGGAAAACACGCATTTAGGCA 59.729 47.619 0.00 0.00 0.00 4.75
633 2705 3.684788 CAGATACTTCTGGGGAAAACACG 59.315 47.826 0.00 0.00 44.78 4.49
645 2717 5.715070 GCCATAATAGCGTCAGATACTTCT 58.285 41.667 0.00 0.00 0.00 2.85
689 2762 1.606668 TCAATTGTGAAGTTGGACCGC 59.393 47.619 5.13 0.00 0.00 5.68
690 2763 2.350772 GCTCAATTGTGAAGTTGGACCG 60.351 50.000 11.59 0.00 31.88 4.79
704 2777 2.159282 CGGTAGGAGTACGTGCTCAATT 60.159 50.000 30.60 19.12 37.24 2.32
808 2881 5.970592 TCGATCCATTGATCCATGAGATAC 58.029 41.667 8.32 4.15 43.82 2.24
809 2882 6.803366 ATCGATCCATTGATCCATGAGATA 57.197 37.500 8.32 0.00 43.82 1.98
859 2935 4.891727 CGGGGCCGATGGTTCTCG 62.892 72.222 0.00 0.00 42.83 4.04
878 2954 4.228567 TGACAGGTTGGTGCGCGA 62.229 61.111 12.10 0.00 0.00 5.87
903 2979 5.405571 TCGAGATGTTTTGTAGAAAGTGCTC 59.594 40.000 0.00 0.00 0.00 4.26
1266 3342 1.141234 CGCGAAGAGGTAGAACCCC 59.859 63.158 0.00 0.00 39.75 4.95
1326 3402 4.697756 TGCTTCCCCGCCGTGAAG 62.698 66.667 8.70 8.70 40.72 3.02
1434 3510 3.164269 CCGTATCCAGCAGCCCCT 61.164 66.667 0.00 0.00 0.00 4.79
1437 3513 3.866582 AGGCCGTATCCAGCAGCC 61.867 66.667 0.00 0.00 44.20 4.85
1487 3563 3.240134 ATCTGGAGCACGGCGTTGT 62.240 57.895 11.19 0.00 0.00 3.32
1533 3609 4.844065 CAATGTACGTGCGCGCGG 62.844 66.667 41.57 25.92 42.83 6.46
1554 3630 0.240945 GCGTGCAGGTATTTGTTGCT 59.759 50.000 8.40 0.00 0.00 3.91
1555 3631 0.039617 TGCGTGCAGGTATTTGTTGC 60.040 50.000 8.40 0.00 0.00 4.17
1556 3632 1.685302 GTGCGTGCAGGTATTTGTTG 58.315 50.000 8.40 0.00 0.00 3.33
1557 3633 0.237235 CGTGCGTGCAGGTATTTGTT 59.763 50.000 8.40 0.00 0.00 2.83
1558 3634 0.882927 ACGTGCGTGCAGGTATTTGT 60.883 50.000 17.57 1.62 42.28 2.83
1559 3635 0.237235 AACGTGCGTGCAGGTATTTG 59.763 50.000 19.09 1.01 43.11 2.32
1560 3636 0.515564 GAACGTGCGTGCAGGTATTT 59.484 50.000 19.09 5.44 43.11 1.40
1561 3637 1.296056 GGAACGTGCGTGCAGGTATT 61.296 55.000 19.09 6.14 43.11 1.89
1562 3638 1.740296 GGAACGTGCGTGCAGGTAT 60.740 57.895 19.09 10.38 43.11 2.73
1563 3639 2.356553 GGAACGTGCGTGCAGGTA 60.357 61.111 19.09 0.00 43.11 3.08
1576 3652 4.587189 CGGCGGGATCCTCGGAAC 62.587 72.222 19.88 7.25 0.00 3.62
1577 3653 4.826404 TCGGCGGGATCCTCGGAA 62.826 66.667 19.88 3.38 0.00 4.30
1578 3654 4.826404 TTCGGCGGGATCCTCGGA 62.826 66.667 19.88 14.63 0.00 4.55
1579 3655 3.575351 GATTCGGCGGGATCCTCGG 62.575 68.421 19.88 12.94 0.00 4.63
1580 3656 2.049063 GATTCGGCGGGATCCTCG 60.049 66.667 12.58 14.49 0.00 4.63
1581 3657 2.049063 CGATTCGGCGGGATCCTC 60.049 66.667 12.58 3.79 0.00 3.71
1592 3668 2.787249 CAAGTGGCAGCCGATTCG 59.213 61.111 7.03 0.00 0.00 3.34
1593 3669 2.486966 GCAAGTGGCAGCCGATTC 59.513 61.111 7.03 0.00 43.97 2.52
1606 3682 3.932580 TAGACGCACGCTGGGCAAG 62.933 63.158 3.82 0.00 33.10 4.01
1607 3683 3.309436 ATAGACGCACGCTGGGCAA 62.309 57.895 3.82 0.00 33.10 4.52
1608 3684 3.770040 ATAGACGCACGCTGGGCA 61.770 61.111 3.82 0.00 33.10 5.36
1609 3685 3.264897 CATAGACGCACGCTGGGC 61.265 66.667 0.00 0.00 33.10 5.36
1610 3686 2.167219 CACATAGACGCACGCTGGG 61.167 63.158 0.00 0.00 36.28 4.45
1611 3687 1.153842 TCACATAGACGCACGCTGG 60.154 57.895 0.00 0.00 0.00 4.85
1612 3688 1.991430 GTCACATAGACGCACGCTG 59.009 57.895 0.00 0.00 37.53 5.18
1613 3689 4.478195 GTCACATAGACGCACGCT 57.522 55.556 0.00 0.00 37.53 5.07
1620 3696 1.030457 ATCGGGGTCGTCACATAGAC 58.970 55.000 0.00 0.00 44.02 2.59
1621 3697 1.679680 GAATCGGGGTCGTCACATAGA 59.320 52.381 0.00 0.00 37.69 1.98
1622 3698 1.599667 CGAATCGGGGTCGTCACATAG 60.600 57.143 0.00 0.00 37.69 2.23
1632 3708 1.678635 TGTACGGTCGAATCGGGGT 60.679 57.895 1.76 1.16 0.00 4.95
1669 3745 4.219115 AGTCCCTGATCTTGATCGTACAT 58.781 43.478 6.19 0.00 0.00 2.29
1792 3871 0.966179 TGCTTCCGCTGACTCTTGTA 59.034 50.000 0.00 0.00 36.97 2.41
1922 4004 4.047059 GAGGCCGTCGACGACCAA 62.047 66.667 38.51 0.00 44.65 3.67
1969 4051 1.440618 TGGTGAACCCTTGGAGCTAA 58.559 50.000 0.00 0.00 34.29 3.09
1971 4053 0.329596 GATGGTGAACCCTTGGAGCT 59.670 55.000 0.00 0.00 34.29 4.09
2273 4356 1.566703 AGTCGAGGAAGGATCTCTGGA 59.433 52.381 0.00 0.00 0.00 3.86
2356 4439 7.834881 AACGGATGTTCAGACTTATATCCTA 57.165 36.000 0.00 0.00 30.83 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.