Multiple sequence alignment - TraesCS4B01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G107000 chr4B 100.000 2576 0 0 1 2576 116954200 116956775 0.000000e+00 4758.0
1 TraesCS4B01G107000 chr4B 100.000 30 0 0 1918 1947 451461450 451461421 3.580000e-04 56.5
2 TraesCS4B01G107000 chr4D 88.999 1209 69 33 728 1904 82497689 82496513 0.000000e+00 1437.0
3 TraesCS4B01G107000 chr4D 82.801 657 73 14 1950 2570 93350833 93351485 3.750000e-153 551.0
4 TraesCS4B01G107000 chr4D 80.206 389 44 9 1950 2306 129932559 129932172 7.070000e-66 261.0
5 TraesCS4B01G107000 chr4D 79.817 327 66 0 1240 1566 82558574 82558900 3.310000e-59 239.0
6 TraesCS4B01G107000 chr4D 95.556 45 2 0 1914 1958 484009350 484009394 3.560000e-09 73.1
7 TraesCS4B01G107000 chr4A 92.407 698 43 8 1001 1695 493614079 493614769 0.000000e+00 987.0
8 TraesCS4B01G107000 chrUn 90.349 487 25 7 1 486 116810399 116809934 1.010000e-173 619.0
9 TraesCS4B01G107000 chrUn 85.333 75 9 2 1997 2070 71438388 71438315 2.750000e-10 76.8
10 TraesCS4B01G107000 chrUn 85.333 75 9 2 1997 2070 264417081 264417008 2.750000e-10 76.8
11 TraesCS4B01G107000 chrUn 85.333 75 9 2 1997 2070 295579420 295579347 2.750000e-10 76.8
12 TraesCS4B01G107000 chrUn 97.561 41 0 1 632 672 219505779 219505818 4.600000e-08 69.4
13 TraesCS4B01G107000 chrUn 89.474 57 3 2 1910 1966 361606595 361606542 4.600000e-08 69.4
14 TraesCS4B01G107000 chr7B 90.408 490 17 13 1 486 481825085 481825548 3.640000e-173 617.0
15 TraesCS4B01G107000 chr7B 97.500 80 2 0 1 80 481824963 481825042 1.240000e-28 137.0
16 TraesCS4B01G107000 chr7B 96.154 78 2 1 615 692 641075167 641075243 2.690000e-25 126.0
17 TraesCS4B01G107000 chr7B 100.000 39 0 0 1916 1954 661745302 661745340 3.560000e-09 73.1
18 TraesCS4B01G107000 chr7B 94.872 39 2 0 521 559 481825546 481825584 7.700000e-06 62.1
19 TraesCS4B01G107000 chr5D 87.976 499 57 3 2077 2573 94344746 94345243 1.030000e-163 586.0
20 TraesCS4B01G107000 chr5D 86.561 506 64 4 2073 2575 304159140 304159644 2.900000e-154 555.0
21 TraesCS4B01G107000 chr5D 87.474 479 58 2 2099 2575 416879620 416879142 3.750000e-153 551.0
22 TraesCS4B01G107000 chr5D 87.179 78 9 1 1988 2064 387619020 387619097 1.270000e-13 87.9
23 TraesCS4B01G107000 chr5D 91.525 59 3 2 632 690 535807765 535807821 2.120000e-11 80.5
24 TraesCS4B01G107000 chr5D 93.333 45 0 3 1914 1957 502377909 502377951 2.140000e-06 63.9
25 TraesCS4B01G107000 chr6D 83.105 657 76 10 1950 2573 336516201 336515547 1.340000e-157 566.0
26 TraesCS4B01G107000 chr6D 73.784 370 82 14 2101 2465 143356570 143356929 5.780000e-27 132.0
27 TraesCS4B01G107000 chr2D 86.948 498 62 3 2077 2573 542193439 542193934 8.050000e-155 556.0
28 TraesCS4B01G107000 chr2A 86.454 502 65 3 2077 2576 624373576 624374076 4.850000e-152 547.0
29 TraesCS4B01G107000 chr2A 83.333 126 13 8 578 702 611743627 611743509 2.710000e-20 110.0
30 TraesCS4B01G107000 chr3D 86.546 498 64 3 2074 2569 614583112 614583608 1.740000e-151 545.0
31 TraesCS4B01G107000 chr3A 86.345 498 67 1 2077 2573 464243853 464243356 2.250000e-150 542.0
32 TraesCS4B01G107000 chr3A 93.023 43 2 1 1915 1957 9045093 9045134 7.700000e-06 62.1
33 TraesCS4B01G107000 chr1A 94.937 79 4 0 616 694 467158429 467158507 9.680000e-25 124.0
34 TraesCS4B01G107000 chr7D 98.333 60 1 0 629 688 587861043 587861102 3.510000e-19 106.0
35 TraesCS4B01G107000 chr7D 88.732 71 6 2 2002 2071 567728396 567728327 4.570000e-13 86.1
36 TraesCS4B01G107000 chr6B 94.030 67 4 0 618 684 562486840 562486906 4.530000e-18 102.0
37 TraesCS4B01G107000 chr6B 84.146 82 9 4 632 713 67689350 67689273 2.750000e-10 76.8
38 TraesCS4B01G107000 chr2B 89.157 83 5 3 601 680 104935818 104935899 1.630000e-17 100.0
39 TraesCS4B01G107000 chr5B 80.769 130 15 5 1950 2070 40971137 40971009 2.730000e-15 93.5
40 TraesCS4B01G107000 chr7A 80.315 127 16 4 1950 2067 646700208 646700334 1.270000e-13 87.9
41 TraesCS4B01G107000 chr5A 95.455 44 0 2 1914 1957 631207456 631207497 4.600000e-08 69.4
42 TraesCS4B01G107000 chr1D 92.500 40 2 1 1915 1953 64888120 64888159 3.580000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G107000 chr4B 116954200 116956775 2575 False 4758.000000 4758 100.000 1 2576 1 chr4B.!!$F1 2575
1 TraesCS4B01G107000 chr4D 82496513 82497689 1176 True 1437.000000 1437 88.999 728 1904 1 chr4D.!!$R1 1176
2 TraesCS4B01G107000 chr4D 93350833 93351485 652 False 551.000000 551 82.801 1950 2570 1 chr4D.!!$F2 620
3 TraesCS4B01G107000 chr4A 493614079 493614769 690 False 987.000000 987 92.407 1001 1695 1 chr4A.!!$F1 694
4 TraesCS4B01G107000 chr7B 481824963 481825584 621 False 272.033333 617 94.260 1 559 3 chr7B.!!$F3 558
5 TraesCS4B01G107000 chr5D 304159140 304159644 504 False 555.000000 555 86.561 2073 2575 1 chr5D.!!$F2 502
6 TraesCS4B01G107000 chr6D 336515547 336516201 654 True 566.000000 566 83.105 1950 2573 1 chr6D.!!$R1 623
7 TraesCS4B01G107000 chr2A 624373576 624374076 500 False 547.000000 547 86.454 2077 2576 1 chr2A.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 595 0.036448 TGCGGGTCAATTCGGGTAAA 59.964 50.0 0.0 0.0 0.0 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1854 0.03601 ACTGTAGCACATGAGGCCAC 60.036 55.0 5.01 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 273 4.003788 CACCCCCGTCGCTCTTGT 62.004 66.667 0.00 0.00 0.00 3.16
166 288 1.070758 TCTTGTCACAGGTCTTCAGGC 59.929 52.381 0.00 0.00 0.00 4.85
221 343 1.686587 CTTTTTGGTTCCTTTCCCGCT 59.313 47.619 0.00 0.00 0.00 5.52
390 512 3.499737 CGCGGCGGCAGAGAAAAT 61.500 61.111 15.84 0.00 39.92 1.82
391 513 2.405191 GCGGCGGCAGAGAAAATC 59.595 61.111 9.78 0.00 39.62 2.17
392 514 3.102097 CGGCGGCAGAGAAAATCC 58.898 61.111 10.53 0.00 0.00 3.01
393 515 1.450312 CGGCGGCAGAGAAAATCCT 60.450 57.895 10.53 0.00 0.00 3.24
394 516 1.026718 CGGCGGCAGAGAAAATCCTT 61.027 55.000 10.53 0.00 0.00 3.36
395 517 0.453390 GGCGGCAGAGAAAATCCTTG 59.547 55.000 3.07 0.00 0.00 3.61
396 518 0.179153 GCGGCAGAGAAAATCCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
397 519 0.097674 CGGCAGAGAAAATCCTTGCG 59.902 55.000 0.00 0.00 0.00 4.85
398 520 1.168714 GGCAGAGAAAATCCTTGCGT 58.831 50.000 0.00 0.00 0.00 5.24
399 521 1.541588 GGCAGAGAAAATCCTTGCGTT 59.458 47.619 0.00 0.00 0.00 4.84
400 522 2.414691 GGCAGAGAAAATCCTTGCGTTC 60.415 50.000 0.00 0.00 0.00 3.95
401 523 2.726066 GCAGAGAAAATCCTTGCGTTCG 60.726 50.000 0.00 0.00 0.00 3.95
402 524 2.480419 CAGAGAAAATCCTTGCGTTCGT 59.520 45.455 0.00 0.00 0.00 3.85
403 525 2.480419 AGAGAAAATCCTTGCGTTCGTG 59.520 45.455 0.00 0.00 0.00 4.35
404 526 2.218603 AGAAAATCCTTGCGTTCGTGT 58.781 42.857 0.00 0.00 0.00 4.49
405 527 3.395639 AGAAAATCCTTGCGTTCGTGTA 58.604 40.909 0.00 0.00 0.00 2.90
406 528 3.810941 AGAAAATCCTTGCGTTCGTGTAA 59.189 39.130 0.00 0.00 0.00 2.41
407 529 3.806316 AAATCCTTGCGTTCGTGTAAG 57.194 42.857 0.00 0.00 0.00 2.34
409 531 1.495951 CCTTGCGTTCGTGTAAGGC 59.504 57.895 8.39 1.99 43.30 4.35
410 532 0.949105 CCTTGCGTTCGTGTAAGGCT 60.949 55.000 8.39 0.00 46.70 4.58
411 533 0.865769 CTTGCGTTCGTGTAAGGCTT 59.134 50.000 4.58 4.58 46.70 4.35
412 534 0.584396 TTGCGTTCGTGTAAGGCTTG 59.416 50.000 10.69 0.00 46.70 4.01
413 535 0.531090 TGCGTTCGTGTAAGGCTTGT 60.531 50.000 10.69 0.00 46.70 3.16
414 536 1.269673 TGCGTTCGTGTAAGGCTTGTA 60.270 47.619 10.69 0.00 46.70 2.41
415 537 1.389106 GCGTTCGTGTAAGGCTTGTAG 59.611 52.381 10.69 0.00 43.93 2.74
416 538 1.990563 CGTTCGTGTAAGGCTTGTAGG 59.009 52.381 10.69 4.58 0.00 3.18
417 539 2.352030 CGTTCGTGTAAGGCTTGTAGGA 60.352 50.000 10.69 6.91 0.00 2.94
418 540 3.656559 GTTCGTGTAAGGCTTGTAGGAA 58.343 45.455 10.69 12.30 0.00 3.36
419 541 4.060205 GTTCGTGTAAGGCTTGTAGGAAA 58.940 43.478 10.69 0.00 0.00 3.13
420 542 3.656559 TCGTGTAAGGCTTGTAGGAAAC 58.343 45.455 10.69 0.00 0.00 2.78
421 543 2.410730 CGTGTAAGGCTTGTAGGAAACG 59.589 50.000 10.69 2.43 0.00 3.60
422 544 2.740447 GTGTAAGGCTTGTAGGAAACGG 59.260 50.000 10.69 0.00 0.00 4.44
423 545 2.289819 TGTAAGGCTTGTAGGAAACGGG 60.290 50.000 10.69 0.00 0.00 5.28
424 546 0.769247 AAGGCTTGTAGGAAACGGGT 59.231 50.000 0.00 0.00 0.00 5.28
425 547 0.769247 AGGCTTGTAGGAAACGGGTT 59.231 50.000 0.00 0.00 0.00 4.11
426 548 1.144298 AGGCTTGTAGGAAACGGGTTT 59.856 47.619 0.00 0.00 35.14 3.27
427 549 1.958579 GGCTTGTAGGAAACGGGTTTT 59.041 47.619 0.00 0.00 32.11 2.43
428 550 2.363038 GGCTTGTAGGAAACGGGTTTTT 59.637 45.455 0.00 0.00 32.11 1.94
447 569 5.365403 TTTTTCACTTATGTTGGGCTACG 57.635 39.130 0.00 0.00 0.00 3.51
448 570 2.684001 TCACTTATGTTGGGCTACGG 57.316 50.000 0.00 0.00 0.00 4.02
449 571 1.903860 TCACTTATGTTGGGCTACGGT 59.096 47.619 0.00 0.00 0.00 4.83
450 572 2.006888 CACTTATGTTGGGCTACGGTG 58.993 52.381 0.00 0.00 0.00 4.94
451 573 1.065709 ACTTATGTTGGGCTACGGTGG 60.066 52.381 0.00 0.00 0.00 4.61
452 574 1.208535 CTTATGTTGGGCTACGGTGGA 59.791 52.381 0.00 0.00 0.00 4.02
453 575 0.538118 TATGTTGGGCTACGGTGGAC 59.462 55.000 0.00 0.00 0.00 4.02
454 576 1.198759 ATGTTGGGCTACGGTGGACT 61.199 55.000 0.00 0.00 0.00 3.85
455 577 1.375523 GTTGGGCTACGGTGGACTG 60.376 63.158 0.00 0.00 0.00 3.51
456 578 3.248446 TTGGGCTACGGTGGACTGC 62.248 63.158 0.00 0.00 0.00 4.40
457 579 4.814294 GGGCTACGGTGGACTGCG 62.814 72.222 0.00 0.00 0.00 5.18
458 580 4.814294 GGCTACGGTGGACTGCGG 62.814 72.222 0.00 0.00 0.00 5.69
459 581 4.814294 GCTACGGTGGACTGCGGG 62.814 72.222 0.00 0.00 0.00 6.13
460 582 3.379445 CTACGGTGGACTGCGGGT 61.379 66.667 0.00 0.00 0.00 5.28
461 583 3.352338 CTACGGTGGACTGCGGGTC 62.352 68.421 0.00 0.00 43.79 4.46
463 585 4.308458 CGGTGGACTGCGGGTCAA 62.308 66.667 10.93 0.00 46.16 3.18
464 586 2.351276 GGTGGACTGCGGGTCAAT 59.649 61.111 10.93 0.00 46.16 2.57
465 587 1.303317 GGTGGACTGCGGGTCAATT 60.303 57.895 10.93 0.00 46.16 2.32
466 588 1.305930 GGTGGACTGCGGGTCAATTC 61.306 60.000 10.93 0.00 46.16 2.17
467 589 1.375396 TGGACTGCGGGTCAATTCG 60.375 57.895 10.93 0.00 46.16 3.34
468 590 2.106683 GGACTGCGGGTCAATTCGG 61.107 63.158 10.93 0.00 46.16 4.30
469 591 2.046314 ACTGCGGGTCAATTCGGG 60.046 61.111 0.00 0.00 0.00 5.14
470 592 2.046314 CTGCGGGTCAATTCGGGT 60.046 61.111 0.00 0.00 0.00 5.28
471 593 1.219664 CTGCGGGTCAATTCGGGTA 59.780 57.895 0.00 0.00 0.00 3.69
472 594 0.391927 CTGCGGGTCAATTCGGGTAA 60.392 55.000 0.00 0.00 0.00 2.85
473 595 0.036448 TGCGGGTCAATTCGGGTAAA 59.964 50.000 0.00 0.00 0.00 2.01
474 596 0.448990 GCGGGTCAATTCGGGTAAAC 59.551 55.000 0.00 0.00 0.00 2.01
475 597 1.947212 GCGGGTCAATTCGGGTAAACT 60.947 52.381 0.00 0.00 0.00 2.66
476 598 2.429478 CGGGTCAATTCGGGTAAACTT 58.571 47.619 0.00 0.00 0.00 2.66
477 599 2.815503 CGGGTCAATTCGGGTAAACTTT 59.184 45.455 0.00 0.00 0.00 2.66
478 600 4.002316 CGGGTCAATTCGGGTAAACTTTA 58.998 43.478 0.00 0.00 0.00 1.85
479 601 4.093850 CGGGTCAATTCGGGTAAACTTTAG 59.906 45.833 0.00 0.00 0.00 1.85
480 602 4.397103 GGGTCAATTCGGGTAAACTTTAGG 59.603 45.833 0.00 0.00 0.00 2.69
481 603 4.397103 GGTCAATTCGGGTAAACTTTAGGG 59.603 45.833 0.00 0.00 0.00 3.53
482 604 5.005740 GTCAATTCGGGTAAACTTTAGGGT 58.994 41.667 0.00 0.00 0.00 4.34
483 605 5.474532 GTCAATTCGGGTAAACTTTAGGGTT 59.525 40.000 0.00 0.00 0.00 4.11
484 606 6.016024 GTCAATTCGGGTAAACTTTAGGGTTT 60.016 38.462 0.00 0.00 41.51 3.27
485 607 6.550481 TCAATTCGGGTAAACTTTAGGGTTTT 59.450 34.615 0.00 0.00 39.66 2.43
486 608 6.579666 ATTCGGGTAAACTTTAGGGTTTTC 57.420 37.500 0.00 0.00 39.66 2.29
487 609 4.397420 TCGGGTAAACTTTAGGGTTTTCC 58.603 43.478 7.05 7.05 42.19 3.13
488 610 4.141298 TCGGGTAAACTTTAGGGTTTTCCA 60.141 41.667 14.32 0.00 43.61 3.53
489 611 4.768448 CGGGTAAACTTTAGGGTTTTCCAT 59.232 41.667 14.32 0.00 43.61 3.41
490 612 5.336134 CGGGTAAACTTTAGGGTTTTCCATG 60.336 44.000 14.32 0.00 43.61 3.66
491 613 5.475719 GGTAAACTTTAGGGTTTTCCATGC 58.524 41.667 9.66 0.00 42.35 4.06
492 614 5.011227 GGTAAACTTTAGGGTTTTCCATGCA 59.989 40.000 9.66 0.00 42.35 3.96
493 615 5.622346 AAACTTTAGGGTTTTCCATGCAA 57.378 34.783 0.00 0.00 42.91 4.08
494 616 5.622346 AACTTTAGGGTTTTCCATGCAAA 57.378 34.783 0.00 0.00 42.91 3.68
495 617 5.622346 ACTTTAGGGTTTTCCATGCAAAA 57.378 34.783 0.00 0.00 42.91 2.44
496 618 5.610398 ACTTTAGGGTTTTCCATGCAAAAG 58.390 37.500 0.00 0.00 42.91 2.27
497 619 5.130311 ACTTTAGGGTTTTCCATGCAAAAGT 59.870 36.000 0.00 0.00 42.91 2.66
498 620 3.473923 AGGGTTTTCCATGCAAAAGTG 57.526 42.857 0.00 0.00 42.91 3.16
499 621 1.872952 GGGTTTTCCATGCAAAAGTGC 59.127 47.619 0.00 0.00 46.29 4.40
500 622 1.872952 GGTTTTCCATGCAAAAGTGCC 59.127 47.619 0.00 0.00 44.44 5.01
501 623 2.485302 GGTTTTCCATGCAAAAGTGCCT 60.485 45.455 0.00 0.00 44.44 4.75
502 624 4.598619 GGTTTTCCATGCAAAAGTGCCTG 61.599 47.826 0.00 0.00 44.44 4.85
503 625 6.775558 GGTTTTCCATGCAAAAGTGCCTGA 62.776 45.833 0.00 0.00 46.09 3.86
507 629 4.922791 GCAAAAGTGCCTGACGAC 57.077 55.556 0.00 0.00 45.68 4.34
508 630 1.282875 GCAAAAGTGCCTGACGACC 59.717 57.895 0.00 0.00 45.68 4.79
509 631 1.166531 GCAAAAGTGCCTGACGACCT 61.167 55.000 0.00 0.00 45.68 3.85
510 632 0.868406 CAAAAGTGCCTGACGACCTC 59.132 55.000 0.00 0.00 0.00 3.85
511 633 0.250338 AAAAGTGCCTGACGACCTCC 60.250 55.000 0.00 0.00 0.00 4.30
512 634 1.407656 AAAGTGCCTGACGACCTCCA 61.408 55.000 0.00 0.00 0.00 3.86
513 635 2.048127 GTGCCTGACGACCTCCAC 60.048 66.667 0.00 0.00 0.00 4.02
514 636 3.680786 TGCCTGACGACCTCCACG 61.681 66.667 0.00 0.00 0.00 4.94
515 637 3.681835 GCCTGACGACCTCCACGT 61.682 66.667 0.00 0.00 46.58 4.49
516 638 3.048602 CCTGACGACCTCCACGTT 58.951 61.111 0.00 0.00 43.97 3.99
517 639 1.366366 CCTGACGACCTCCACGTTT 59.634 57.895 0.00 0.00 43.97 3.60
518 640 0.666577 CCTGACGACCTCCACGTTTC 60.667 60.000 0.00 0.00 43.97 2.78
519 641 1.002250 CTGACGACCTCCACGTTTCG 61.002 60.000 0.00 0.00 43.97 3.46
520 642 1.008079 GACGACCTCCACGTTTCGT 60.008 57.895 5.83 5.83 46.90 3.85
521 643 0.595825 GACGACCTCCACGTTTCGTT 60.596 55.000 7.19 0.00 44.40 3.85
522 644 0.595825 ACGACCTCCACGTTTCGTTC 60.596 55.000 0.00 0.00 41.80 3.95
523 645 0.595567 CGACCTCCACGTTTCGTTCA 60.596 55.000 0.00 0.00 38.32 3.18
524 646 1.792006 GACCTCCACGTTTCGTTCAT 58.208 50.000 0.00 0.00 38.32 2.57
525 647 2.669113 CGACCTCCACGTTTCGTTCATA 60.669 50.000 0.00 0.00 38.32 2.15
526 648 2.665052 GACCTCCACGTTTCGTTCATAC 59.335 50.000 0.00 0.00 38.32 2.39
529 651 2.318578 TCCACGTTTCGTTCATACGTC 58.681 47.619 0.00 0.00 45.67 4.34
530 652 2.052891 CCACGTTTCGTTCATACGTCA 58.947 47.619 0.00 0.00 45.67 4.35
531 653 2.664568 CCACGTTTCGTTCATACGTCAT 59.335 45.455 0.00 0.00 45.67 3.06
532 654 3.481306 CCACGTTTCGTTCATACGTCATG 60.481 47.826 0.00 0.00 45.67 3.07
533 655 3.120616 CACGTTTCGTTCATACGTCATGT 59.879 43.478 0.00 0.00 45.67 3.21
534 656 3.737266 ACGTTTCGTTCATACGTCATGTT 59.263 39.130 0.00 0.00 44.32 2.71
535 657 4.209703 ACGTTTCGTTCATACGTCATGTTT 59.790 37.500 0.00 0.00 44.32 2.83
536 658 5.610982 ACGTTTCGTTCATACGTCATGTTTC 60.611 40.000 0.00 0.00 44.32 2.78
537 659 8.450933 ACGTTTCGTTCATACGTCATGTTTCC 62.451 42.308 0.00 0.00 44.32 3.13
539 661 4.921470 CGTTCATACGTCATGTTTCCTT 57.079 40.909 0.00 0.00 42.72 3.36
540 662 4.637968 CGTTCATACGTCATGTTTCCTTG 58.362 43.478 0.00 0.00 42.72 3.61
541 663 4.435518 CGTTCATACGTCATGTTTCCTTGG 60.436 45.833 0.00 0.00 42.72 3.61
542 664 4.280436 TCATACGTCATGTTTCCTTGGT 57.720 40.909 0.00 0.00 35.96 3.67
543 665 4.647611 TCATACGTCATGTTTCCTTGGTT 58.352 39.130 0.00 0.00 35.96 3.67
544 666 5.067273 TCATACGTCATGTTTCCTTGGTTT 58.933 37.500 0.00 0.00 35.96 3.27
545 667 3.708563 ACGTCATGTTTCCTTGGTTTG 57.291 42.857 0.00 0.00 0.00 2.93
546 668 2.223711 ACGTCATGTTTCCTTGGTTTGC 60.224 45.455 0.00 0.00 0.00 3.68
547 669 2.223688 CGTCATGTTTCCTTGGTTTGCA 60.224 45.455 0.00 0.00 0.00 4.08
548 670 3.123050 GTCATGTTTCCTTGGTTTGCAC 58.877 45.455 0.00 0.00 0.00 4.57
549 671 2.762887 TCATGTTTCCTTGGTTTGCACA 59.237 40.909 0.00 0.00 0.00 4.57
550 672 3.196469 TCATGTTTCCTTGGTTTGCACAA 59.804 39.130 0.00 0.00 0.00 3.33
551 673 3.685139 TGTTTCCTTGGTTTGCACAAA 57.315 38.095 0.00 0.00 0.00 2.83
552 674 4.213564 TGTTTCCTTGGTTTGCACAAAT 57.786 36.364 0.00 0.00 32.36 2.32
553 675 5.344743 TGTTTCCTTGGTTTGCACAAATA 57.655 34.783 0.00 0.00 32.36 1.40
554 676 5.923204 TGTTTCCTTGGTTTGCACAAATAT 58.077 33.333 0.00 0.00 32.36 1.28
555 677 7.055667 TGTTTCCTTGGTTTGCACAAATATA 57.944 32.000 0.00 0.00 32.36 0.86
556 678 7.675062 TGTTTCCTTGGTTTGCACAAATATAT 58.325 30.769 0.00 0.00 32.36 0.86
557 679 7.601886 TGTTTCCTTGGTTTGCACAAATATATG 59.398 33.333 0.00 0.00 32.36 1.78
558 680 6.849085 TCCTTGGTTTGCACAAATATATGT 57.151 33.333 0.00 0.00 32.36 2.29
559 681 7.238486 TCCTTGGTTTGCACAAATATATGTT 57.762 32.000 0.00 0.00 32.36 2.71
560 682 7.675062 TCCTTGGTTTGCACAAATATATGTTT 58.325 30.769 0.00 0.00 32.36 2.83
561 683 7.816995 TCCTTGGTTTGCACAAATATATGTTTC 59.183 33.333 0.00 0.00 32.36 2.78
562 684 7.064490 CCTTGGTTTGCACAAATATATGTTTCC 59.936 37.037 0.00 0.00 32.36 3.13
563 685 7.238486 TGGTTTGCACAAATATATGTTTCCT 57.762 32.000 0.00 0.00 32.36 3.36
564 686 7.319646 TGGTTTGCACAAATATATGTTTCCTC 58.680 34.615 0.00 0.00 32.36 3.71
565 687 6.756542 GGTTTGCACAAATATATGTTTCCTCC 59.243 38.462 0.00 0.00 32.36 4.30
566 688 7.319646 GTTTGCACAAATATATGTTTCCTCCA 58.680 34.615 0.00 0.00 32.36 3.86
567 689 7.473735 TTGCACAAATATATGTTTCCTCCAA 57.526 32.000 0.00 0.00 0.00 3.53
568 690 7.473735 TGCACAAATATATGTTTCCTCCAAA 57.526 32.000 0.00 0.00 0.00 3.28
569 691 7.546358 TGCACAAATATATGTTTCCTCCAAAG 58.454 34.615 0.00 0.00 0.00 2.77
570 692 6.980397 GCACAAATATATGTTTCCTCCAAAGG 59.020 38.462 0.00 0.00 44.89 3.11
615 737 6.211664 CGTATAGCAAAATCCTTAAGACGG 57.788 41.667 3.36 0.00 0.00 4.79
616 738 5.176958 CGTATAGCAAAATCCTTAAGACGGG 59.823 44.000 3.36 0.00 0.00 5.28
617 739 3.713826 AGCAAAATCCTTAAGACGGGA 57.286 42.857 3.36 0.00 35.96 5.14
618 740 3.344515 AGCAAAATCCTTAAGACGGGAC 58.655 45.455 3.36 0.00 34.16 4.46
631 753 4.052519 GGGACGAAACAAAGCGGA 57.947 55.556 0.00 0.00 0.00 5.54
632 754 2.323213 GGGACGAAACAAAGCGGAA 58.677 52.632 0.00 0.00 0.00 4.30
633 755 0.040692 GGGACGAAACAAAGCGGAAC 60.041 55.000 0.00 0.00 0.00 3.62
634 756 0.040692 GGACGAAACAAAGCGGAACC 60.041 55.000 0.00 0.00 0.00 3.62
635 757 0.658897 GACGAAACAAAGCGGAACCA 59.341 50.000 0.00 0.00 0.00 3.67
636 758 1.064357 GACGAAACAAAGCGGAACCAA 59.936 47.619 0.00 0.00 0.00 3.67
637 759 1.473278 ACGAAACAAAGCGGAACCAAA 59.527 42.857 0.00 0.00 0.00 3.28
638 760 2.100087 ACGAAACAAAGCGGAACCAAAT 59.900 40.909 0.00 0.00 0.00 2.32
639 761 2.724174 CGAAACAAAGCGGAACCAAATC 59.276 45.455 0.00 0.00 0.00 2.17
640 762 3.712187 GAAACAAAGCGGAACCAAATCA 58.288 40.909 0.00 0.00 0.00 2.57
641 763 3.810310 AACAAAGCGGAACCAAATCAA 57.190 38.095 0.00 0.00 0.00 2.57
642 764 3.369546 ACAAAGCGGAACCAAATCAAG 57.630 42.857 0.00 0.00 0.00 3.02
643 765 2.955660 ACAAAGCGGAACCAAATCAAGA 59.044 40.909 0.00 0.00 0.00 3.02
644 766 3.383185 ACAAAGCGGAACCAAATCAAGAA 59.617 39.130 0.00 0.00 0.00 2.52
645 767 4.039124 ACAAAGCGGAACCAAATCAAGAAT 59.961 37.500 0.00 0.00 0.00 2.40
646 768 5.242838 ACAAAGCGGAACCAAATCAAGAATA 59.757 36.000 0.00 0.00 0.00 1.75
647 769 4.965119 AGCGGAACCAAATCAAGAATAC 57.035 40.909 0.00 0.00 0.00 1.89
648 770 3.694566 AGCGGAACCAAATCAAGAATACC 59.305 43.478 0.00 0.00 0.00 2.73
649 771 3.694566 GCGGAACCAAATCAAGAATACCT 59.305 43.478 0.00 0.00 0.00 3.08
650 772 4.879545 GCGGAACCAAATCAAGAATACCTA 59.120 41.667 0.00 0.00 0.00 3.08
651 773 5.531287 GCGGAACCAAATCAAGAATACCTAT 59.469 40.000 0.00 0.00 0.00 2.57
652 774 6.039382 GCGGAACCAAATCAAGAATACCTATT 59.961 38.462 0.00 0.00 0.00 1.73
653 775 7.639945 CGGAACCAAATCAAGAATACCTATTC 58.360 38.462 0.00 0.00 41.78 1.75
654 776 7.255139 CGGAACCAAATCAAGAATACCTATTCC 60.255 40.741 2.04 0.00 42.29 3.01
655 777 7.014326 GGAACCAAATCAAGAATACCTATTCCC 59.986 40.741 2.04 0.00 42.29 3.97
656 778 7.226059 ACCAAATCAAGAATACCTATTCCCT 57.774 36.000 2.04 0.00 42.29 4.20
657 779 7.652554 ACCAAATCAAGAATACCTATTCCCTT 58.347 34.615 2.04 0.00 42.29 3.95
658 780 8.122481 ACCAAATCAAGAATACCTATTCCCTTT 58.878 33.333 2.04 0.00 42.29 3.11
659 781 9.640952 CCAAATCAAGAATACCTATTCCCTTTA 57.359 33.333 2.04 0.00 42.29 1.85
719 841 7.883391 AGATGTAGATGTAGATAATACCCCG 57.117 40.000 0.00 0.00 0.00 5.73
720 842 5.909621 TGTAGATGTAGATAATACCCCGC 57.090 43.478 0.00 0.00 0.00 6.13
721 843 5.326900 TGTAGATGTAGATAATACCCCGCA 58.673 41.667 0.00 0.00 0.00 5.69
722 844 5.776208 TGTAGATGTAGATAATACCCCGCAA 59.224 40.000 0.00 0.00 0.00 4.85
723 845 5.818678 AGATGTAGATAATACCCCGCAAA 57.181 39.130 0.00 0.00 0.00 3.68
724 846 6.182507 AGATGTAGATAATACCCCGCAAAA 57.817 37.500 0.00 0.00 0.00 2.44
725 847 6.597562 AGATGTAGATAATACCCCGCAAAAA 58.402 36.000 0.00 0.00 0.00 1.94
754 877 5.107337 GCAGCTCTTTTGCTAAAATTTGTCC 60.107 40.000 0.00 0.00 41.98 4.02
774 897 3.970828 CTTTTTAAAGGATTTGCGCCG 57.029 42.857 4.18 0.00 39.63 6.46
777 900 0.523966 TTAAAGGATTTGCGCCGTGG 59.476 50.000 4.18 0.00 39.63 4.94
782 905 1.579429 GATTTGCGCCGTGGAACTT 59.421 52.632 4.18 0.00 31.75 2.66
783 906 0.729140 GATTTGCGCCGTGGAACTTG 60.729 55.000 4.18 0.00 31.75 3.16
788 911 2.027625 CGCCGTGGAACTTGAGGTC 61.028 63.158 0.00 0.00 31.75 3.85
806 929 4.324267 AGGTCTTTGGTGCATACAAGTAC 58.676 43.478 6.84 8.70 0.00 2.73
811 934 7.200455 GTCTTTGGTGCATACAAGTACTTTTT 58.800 34.615 5.07 0.00 0.00 1.94
812 935 7.167468 GTCTTTGGTGCATACAAGTACTTTTTG 59.833 37.037 5.07 5.21 0.00 2.44
814 937 6.458232 TGGTGCATACAAGTACTTTTTGTT 57.542 33.333 5.07 0.00 39.36 2.83
815 938 7.569639 TGGTGCATACAAGTACTTTTTGTTA 57.430 32.000 5.07 0.00 39.36 2.41
816 939 7.644490 TGGTGCATACAAGTACTTTTTGTTAG 58.356 34.615 5.07 0.00 39.36 2.34
817 940 7.499563 TGGTGCATACAAGTACTTTTTGTTAGA 59.500 33.333 5.07 0.00 39.36 2.10
818 941 8.015658 GGTGCATACAAGTACTTTTTGTTAGAG 58.984 37.037 5.07 0.00 39.36 2.43
819 942 8.770828 GTGCATACAAGTACTTTTTGTTAGAGA 58.229 33.333 5.07 0.00 39.36 3.10
858 984 4.748144 CCAGGGAGGTGGCTTGCC 62.748 72.222 4.43 4.43 0.00 4.52
869 996 3.804193 GCTTGCCGCCGGAGAAAG 61.804 66.667 7.68 10.98 0.00 2.62
887 1014 4.529377 AGAAAGCCCATGTGTCATCAAATT 59.471 37.500 0.00 0.00 0.00 1.82
888 1015 3.880047 AGCCCATGTGTCATCAAATTG 57.120 42.857 0.00 0.00 0.00 2.32
890 1017 3.579586 AGCCCATGTGTCATCAAATTGTT 59.420 39.130 0.00 0.00 0.00 2.83
898 1025 4.682860 GTGTCATCAAATTGTTGAGGCTTG 59.317 41.667 6.96 0.00 46.75 4.01
965 1094 2.203015 GACGGCCACACACACTGT 60.203 61.111 2.24 0.00 0.00 3.55
970 1099 1.269883 CGGCCACACACACTGTACTAA 60.270 52.381 2.24 0.00 0.00 2.24
971 1100 2.140717 GGCCACACACACTGTACTAAC 58.859 52.381 0.00 0.00 0.00 2.34
972 1101 2.140717 GCCACACACACTGTACTAACC 58.859 52.381 0.00 0.00 0.00 2.85
974 1103 2.034939 CCACACACACTGTACTAACCGA 59.965 50.000 0.00 0.00 0.00 4.69
975 1104 3.305964 CACACACACTGTACTAACCGAG 58.694 50.000 0.00 0.00 0.00 4.63
977 1106 4.023792 CACACACACTGTACTAACCGAGTA 60.024 45.833 0.00 0.00 39.81 2.59
1017 1146 0.543749 AAATGGCCTCCCTCTCTTCG 59.456 55.000 3.32 0.00 0.00 3.79
1074 1203 1.337387 GCCTTCTTCTACCGCTACGAT 59.663 52.381 0.00 0.00 0.00 3.73
1100 1229 2.778679 CGGCAACAAGACTAGCGC 59.221 61.111 0.00 0.00 0.00 5.92
1113 1242 3.108288 TAGCGCCACAACCACCACA 62.108 57.895 2.29 0.00 0.00 4.17
1146 1275 0.596577 ACATGCACGACGACTACACT 59.403 50.000 0.00 0.00 0.00 3.55
1149 1278 1.167781 TGCACGACGACTACACTGGA 61.168 55.000 0.00 0.00 0.00 3.86
1610 1787 2.096406 CACCGTCAGCGCGATTTG 59.904 61.111 12.10 4.59 36.67 2.32
1631 1808 4.391155 TGACGGGTTACTTGTAATTGCTT 58.609 39.130 0.00 0.00 0.00 3.91
1689 1869 2.125147 GCGTGGCCTCATGTGCTA 60.125 61.111 3.32 1.68 32.65 3.49
1699 1879 3.557595 GCCTCATGTGCTACAGTAATCAC 59.442 47.826 0.00 5.93 0.00 3.06
1713 1893 6.656003 ACAGTAATCACGTTGCTACTTTTTC 58.344 36.000 0.00 0.00 31.05 2.29
1714 1894 6.077838 CAGTAATCACGTTGCTACTTTTTCC 58.922 40.000 0.00 0.00 31.05 3.13
1715 1895 3.806316 ATCACGTTGCTACTTTTTCCG 57.194 42.857 0.00 0.00 0.00 4.30
1716 1896 2.553086 TCACGTTGCTACTTTTTCCGT 58.447 42.857 0.00 0.00 0.00 4.69
1718 1898 3.033185 CACGTTGCTACTTTTTCCGTTG 58.967 45.455 0.00 0.00 0.00 4.10
1719 1899 2.041244 CGTTGCTACTTTTTCCGTTGC 58.959 47.619 0.00 0.00 34.48 4.17
1722 1931 4.216731 GTTGCTACTTTTTCCGTTGCTAC 58.783 43.478 0.00 0.00 34.87 3.58
1735 1944 2.695646 GCTACAGTAGCGCGTTGC 59.304 61.111 16.89 5.15 42.62 4.17
1785 1994 3.970640 TCTGTTTGGCAAATAAACCCCTT 59.029 39.130 16.74 0.00 37.25 3.95
1794 2003 8.840200 TGGCAAATAAACCCCTTTAATATGTA 57.160 30.769 0.00 0.00 0.00 2.29
1795 2004 8.697292 TGGCAAATAAACCCCTTTAATATGTAC 58.303 33.333 0.00 0.00 0.00 2.90
1796 2005 8.920174 GGCAAATAAACCCCTTTAATATGTACT 58.080 33.333 0.00 0.00 0.00 2.73
1814 2023 4.284490 TGTACTATCAATGATGGGAGGAGC 59.716 45.833 11.25 0.00 0.00 4.70
1827 2036 0.454196 GAGGAGCCGTCTCAAGAGTC 59.546 60.000 0.00 0.00 41.13 3.36
1836 2045 4.058124 CCGTCTCAAGAGTCACATGAAAA 58.942 43.478 0.00 0.00 0.00 2.29
1838 2047 4.984785 CGTCTCAAGAGTCACATGAAAAGA 59.015 41.667 0.00 0.00 0.00 2.52
1877 2086 9.533831 AAAGTTACATGAAAGGTTCTATTCCAT 57.466 29.630 0.00 0.00 28.09 3.41
1888 2097 1.162698 CTATTCCATGCCATCAGCCG 58.837 55.000 0.00 0.00 42.71 5.52
1904 2113 5.097742 TCAGCCGATGAAGAAGGAAAATA 57.902 39.130 0.00 0.00 34.02 1.40
1905 2114 5.496556 TCAGCCGATGAAGAAGGAAAATAA 58.503 37.500 0.00 0.00 34.02 1.40
1906 2115 5.943416 TCAGCCGATGAAGAAGGAAAATAAA 59.057 36.000 0.00 0.00 34.02 1.40
1907 2116 6.603201 TCAGCCGATGAAGAAGGAAAATAAAT 59.397 34.615 0.00 0.00 34.02 1.40
1908 2117 7.122650 TCAGCCGATGAAGAAGGAAAATAAATT 59.877 33.333 0.00 0.00 34.02 1.82
1909 2118 8.405531 CAGCCGATGAAGAAGGAAAATAAATTA 58.594 33.333 0.00 0.00 0.00 1.40
1910 2119 9.136323 AGCCGATGAAGAAGGAAAATAAATTAT 57.864 29.630 0.00 0.00 0.00 1.28
1939 2148 8.645814 TTTCTTTTAGAAAAGGAGGATTACCC 57.354 34.615 13.40 0.00 40.89 3.69
1940 2149 6.728411 TCTTTTAGAAAAGGAGGATTACCCC 58.272 40.000 13.40 0.00 44.22 4.95
1941 2150 6.276092 TCTTTTAGAAAAGGAGGATTACCCCA 59.724 38.462 13.40 0.00 44.22 4.96
1942 2151 5.710409 TTAGAAAAGGAGGATTACCCCAG 57.290 43.478 0.00 0.00 36.73 4.45
1943 2152 2.242452 AGAAAAGGAGGATTACCCCAGC 59.758 50.000 0.00 0.00 36.73 4.85
1944 2153 0.927029 AAAGGAGGATTACCCCAGCC 59.073 55.000 0.00 0.00 36.73 4.85
1945 2154 0.046397 AAGGAGGATTACCCCAGCCT 59.954 55.000 0.00 0.00 35.59 4.58
1946 2155 0.400670 AGGAGGATTACCCCAGCCTC 60.401 60.000 0.00 0.00 44.84 4.70
1947 2156 0.400670 GGAGGATTACCCCAGCCTCT 60.401 60.000 0.00 0.00 44.91 3.69
1948 2157 0.761802 GAGGATTACCCCAGCCTCTG 59.238 60.000 0.00 0.00 42.81 3.35
1954 2163 0.264657 TACCCCAGCCTCTGCATCTA 59.735 55.000 0.00 0.00 41.13 1.98
1955 2164 1.053264 ACCCCAGCCTCTGCATCTAG 61.053 60.000 0.00 0.00 41.13 2.43
1956 2165 0.762082 CCCCAGCCTCTGCATCTAGA 60.762 60.000 0.00 0.00 41.13 2.43
1962 2171 2.093764 AGCCTCTGCATCTAGACAACAC 60.094 50.000 0.00 0.00 41.13 3.32
1963 2172 2.354103 GCCTCTGCATCTAGACAACACA 60.354 50.000 0.00 0.00 37.47 3.72
1998 2215 4.630644 ATCCACTTGATGCCGATAATCT 57.369 40.909 0.00 0.00 30.54 2.40
2010 2227 4.772624 TGCCGATAATCTGAGCCTAATACT 59.227 41.667 0.00 0.00 0.00 2.12
2029 2247 6.811253 ATACTAAACAGAATCGCACCAAAA 57.189 33.333 0.00 0.00 0.00 2.44
2092 2332 5.648526 ACTAGATACACTCTCATGTGTCGTT 59.351 40.000 3.46 0.00 46.90 3.85
2097 2337 1.337071 ACTCTCATGTGTCGTTGTCGT 59.663 47.619 0.00 0.00 38.33 4.34
2139 2379 2.035961 TCAGAGCAGAAACTAACGCACT 59.964 45.455 0.00 0.00 0.00 4.40
2143 2383 1.864711 GCAGAAACTAACGCACTGACA 59.135 47.619 0.00 0.00 0.00 3.58
2180 2420 3.001902 ATCGACGCCACCATGACGT 62.002 57.895 0.00 0.00 43.83 4.34
2195 2435 1.601197 ACGTCAGACAGCGTCCTCT 60.601 57.895 0.41 0.00 36.54 3.69
2197 2437 0.039074 CGTCAGACAGCGTCCTCTTT 60.039 55.000 0.41 0.00 32.18 2.52
2199 2439 0.241213 TCAGACAGCGTCCTCTTTCG 59.759 55.000 5.29 0.00 32.18 3.46
2237 2478 3.064987 ATCGAACGCCCAGTCTCCG 62.065 63.158 0.00 0.00 0.00 4.63
2240 2481 2.678934 AACGCCCAGTCTCCGCTA 60.679 61.111 0.00 0.00 0.00 4.26
2311 2552 0.821711 CCACCAAAGAAGCCGTCCAA 60.822 55.000 0.00 0.00 0.00 3.53
2327 2568 2.285368 AATGGTCCCTCGAGCCCA 60.285 61.111 16.07 16.07 35.55 5.36
2358 2599 2.679996 GAATGGCGCCCCAAAGGT 60.680 61.111 26.77 0.00 46.14 3.50
2376 2617 1.021968 GTGGAAACGACACCAAAGCT 58.978 50.000 0.00 0.00 37.94 3.74
2378 2619 2.096248 TGGAAACGACACCAAAGCTTT 58.904 42.857 5.69 5.69 32.93 3.51
2383 2624 1.661509 GACACCAAAGCTTTGCCGC 60.662 57.895 29.93 16.18 36.86 6.53
2465 2706 1.126846 CACGACGATGCCTTCAAGAAC 59.873 52.381 0.00 0.00 0.00 3.01
2494 2735 1.302511 AAAAGAGTGCCGCCATCGT 60.303 52.632 0.00 0.00 0.00 3.73
2503 2744 2.180769 CGCCATCGTCGGTCTTGA 59.819 61.111 0.00 0.00 0.00 3.02
2504 2745 1.226974 CGCCATCGTCGGTCTTGAT 60.227 57.895 0.00 0.00 0.00 2.57
2536 2778 2.951229 ACGAGGTTTTCACCCAGATT 57.049 45.000 0.00 0.00 45.63 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.519498 TCTCGGTCATCCTCCTCCTA 58.481 55.000 0.00 0.00 0.00 2.94
113 235 3.714001 TGCAGAGCAGGGCAGAGG 61.714 66.667 0.00 0.00 34.58 3.69
142 264 1.000163 GAAGACCTGTGACAAGAGCGA 60.000 52.381 0.00 0.00 0.00 4.93
151 273 0.681733 GACTGCCTGAAGACCTGTGA 59.318 55.000 0.00 0.00 0.00 3.58
166 288 1.466167 CCAACCGAAGCTCAATGACTG 59.534 52.381 0.00 0.00 0.00 3.51
191 313 3.020984 GGAACCAAAAAGACAGACACCA 58.979 45.455 0.00 0.00 0.00 4.17
221 343 4.013728 ACACAAAGAAACAGCTGGTACAA 58.986 39.130 19.93 0.00 38.70 2.41
262 384 0.249615 ACATGATCCGCCACATCTCG 60.250 55.000 0.00 0.00 0.00 4.04
373 495 3.440356 GATTTTCTCTGCCGCCGCG 62.440 63.158 5.59 5.59 38.08 6.46
374 496 2.405191 GATTTTCTCTGCCGCCGC 59.595 61.111 0.00 0.00 0.00 6.53
375 497 1.026718 AAGGATTTTCTCTGCCGCCG 61.027 55.000 0.00 0.00 0.00 6.46
376 498 0.453390 CAAGGATTTTCTCTGCCGCC 59.547 55.000 0.00 0.00 0.00 6.13
377 499 0.179153 GCAAGGATTTTCTCTGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
378 500 0.097674 CGCAAGGATTTTCTCTGCCG 59.902 55.000 0.00 0.00 0.00 5.69
379 501 1.168714 ACGCAAGGATTTTCTCTGCC 58.831 50.000 0.00 0.00 46.39 4.85
380 502 2.726066 CGAACGCAAGGATTTTCTCTGC 60.726 50.000 0.00 0.00 46.39 4.26
381 503 2.480419 ACGAACGCAAGGATTTTCTCTG 59.520 45.455 0.00 0.00 46.39 3.35
382 504 2.480419 CACGAACGCAAGGATTTTCTCT 59.520 45.455 0.00 0.00 46.39 3.10
383 505 2.223377 ACACGAACGCAAGGATTTTCTC 59.777 45.455 0.00 0.00 46.39 2.87
384 506 2.218603 ACACGAACGCAAGGATTTTCT 58.781 42.857 0.00 0.00 46.39 2.52
385 507 2.681152 ACACGAACGCAAGGATTTTC 57.319 45.000 0.00 0.00 46.39 2.29
386 508 3.058501 CCTTACACGAACGCAAGGATTTT 60.059 43.478 13.67 0.00 40.02 1.82
387 509 2.482721 CCTTACACGAACGCAAGGATTT 59.517 45.455 13.67 0.00 40.02 2.17
388 510 2.073816 CCTTACACGAACGCAAGGATT 58.926 47.619 13.67 0.00 40.02 3.01
389 511 1.722011 CCTTACACGAACGCAAGGAT 58.278 50.000 13.67 0.00 40.02 3.24
390 512 0.947180 GCCTTACACGAACGCAAGGA 60.947 55.000 19.45 0.00 40.02 3.36
391 513 0.949105 AGCCTTACACGAACGCAAGG 60.949 55.000 14.23 14.23 46.39 3.61
393 515 0.584396 CAAGCCTTACACGAACGCAA 59.416 50.000 0.00 0.00 0.00 4.85
394 516 0.531090 ACAAGCCTTACACGAACGCA 60.531 50.000 0.00 0.00 0.00 5.24
395 517 1.389106 CTACAAGCCTTACACGAACGC 59.611 52.381 0.00 0.00 0.00 4.84
396 518 1.990563 CCTACAAGCCTTACACGAACG 59.009 52.381 0.00 0.00 0.00 3.95
397 519 3.308438 TCCTACAAGCCTTACACGAAC 57.692 47.619 0.00 0.00 0.00 3.95
398 520 4.060205 GTTTCCTACAAGCCTTACACGAA 58.940 43.478 0.00 0.00 0.00 3.85
399 521 3.656559 GTTTCCTACAAGCCTTACACGA 58.343 45.455 0.00 0.00 0.00 4.35
400 522 2.410730 CGTTTCCTACAAGCCTTACACG 59.589 50.000 0.00 0.00 0.00 4.49
401 523 2.740447 CCGTTTCCTACAAGCCTTACAC 59.260 50.000 0.00 0.00 0.00 2.90
402 524 2.289819 CCCGTTTCCTACAAGCCTTACA 60.290 50.000 0.00 0.00 0.00 2.41
403 525 2.289882 ACCCGTTTCCTACAAGCCTTAC 60.290 50.000 0.00 0.00 0.00 2.34
404 526 1.980036 ACCCGTTTCCTACAAGCCTTA 59.020 47.619 0.00 0.00 0.00 2.69
405 527 0.769247 ACCCGTTTCCTACAAGCCTT 59.231 50.000 0.00 0.00 0.00 4.35
406 528 0.769247 AACCCGTTTCCTACAAGCCT 59.231 50.000 0.00 0.00 0.00 4.58
407 529 1.612676 AAACCCGTTTCCTACAAGCC 58.387 50.000 0.00 0.00 0.00 4.35
408 530 3.720949 AAAAACCCGTTTCCTACAAGC 57.279 42.857 0.00 0.00 31.45 4.01
425 547 4.216687 CCGTAGCCCAACATAAGTGAAAAA 59.783 41.667 0.00 0.00 0.00 1.94
426 548 3.754323 CCGTAGCCCAACATAAGTGAAAA 59.246 43.478 0.00 0.00 0.00 2.29
427 549 3.244630 ACCGTAGCCCAACATAAGTGAAA 60.245 43.478 0.00 0.00 0.00 2.69
428 550 2.303600 ACCGTAGCCCAACATAAGTGAA 59.696 45.455 0.00 0.00 0.00 3.18
429 551 1.903860 ACCGTAGCCCAACATAAGTGA 59.096 47.619 0.00 0.00 0.00 3.41
430 552 2.006888 CACCGTAGCCCAACATAAGTG 58.993 52.381 0.00 0.00 0.00 3.16
431 553 1.065709 CCACCGTAGCCCAACATAAGT 60.066 52.381 0.00 0.00 0.00 2.24
432 554 1.208535 TCCACCGTAGCCCAACATAAG 59.791 52.381 0.00 0.00 0.00 1.73
433 555 1.065998 GTCCACCGTAGCCCAACATAA 60.066 52.381 0.00 0.00 0.00 1.90
434 556 0.538118 GTCCACCGTAGCCCAACATA 59.462 55.000 0.00 0.00 0.00 2.29
435 557 1.198759 AGTCCACCGTAGCCCAACAT 61.199 55.000 0.00 0.00 0.00 2.71
436 558 1.839747 AGTCCACCGTAGCCCAACA 60.840 57.895 0.00 0.00 0.00 3.33
437 559 1.375523 CAGTCCACCGTAGCCCAAC 60.376 63.158 0.00 0.00 0.00 3.77
438 560 3.065306 CAGTCCACCGTAGCCCAA 58.935 61.111 0.00 0.00 0.00 4.12
439 561 3.702048 GCAGTCCACCGTAGCCCA 61.702 66.667 0.00 0.00 0.00 5.36
440 562 4.814294 CGCAGTCCACCGTAGCCC 62.814 72.222 0.00 0.00 0.00 5.19
441 563 4.814294 CCGCAGTCCACCGTAGCC 62.814 72.222 0.00 0.00 0.00 3.93
442 564 4.814294 CCCGCAGTCCACCGTAGC 62.814 72.222 0.00 0.00 0.00 3.58
443 565 3.352338 GACCCGCAGTCCACCGTAG 62.352 68.421 0.00 0.00 39.84 3.51
444 566 3.376078 GACCCGCAGTCCACCGTA 61.376 66.667 0.00 0.00 39.84 4.02
446 568 3.605749 ATTGACCCGCAGTCCACCG 62.606 63.158 1.69 0.00 45.68 4.94
447 569 1.303317 AATTGACCCGCAGTCCACC 60.303 57.895 1.69 0.00 45.68 4.61
448 570 1.635663 CGAATTGACCCGCAGTCCAC 61.636 60.000 1.69 0.00 45.68 4.02
449 571 1.375396 CGAATTGACCCGCAGTCCA 60.375 57.895 1.69 0.00 45.68 4.02
450 572 2.106683 CCGAATTGACCCGCAGTCC 61.107 63.158 1.69 0.00 45.68 3.85
451 573 2.106683 CCCGAATTGACCCGCAGTC 61.107 63.158 0.00 0.00 46.51 3.51
452 574 1.546589 TACCCGAATTGACCCGCAGT 61.547 55.000 0.00 0.00 0.00 4.40
453 575 0.391927 TTACCCGAATTGACCCGCAG 60.392 55.000 0.00 0.00 0.00 5.18
454 576 0.036448 TTTACCCGAATTGACCCGCA 59.964 50.000 0.00 0.00 0.00 5.69
455 577 0.448990 GTTTACCCGAATTGACCCGC 59.551 55.000 0.00 0.00 0.00 6.13
456 578 2.103537 AGTTTACCCGAATTGACCCG 57.896 50.000 0.00 0.00 0.00 5.28
457 579 4.397103 CCTAAAGTTTACCCGAATTGACCC 59.603 45.833 0.00 0.00 0.00 4.46
458 580 4.397103 CCCTAAAGTTTACCCGAATTGACC 59.603 45.833 0.00 0.00 0.00 4.02
459 581 5.005740 ACCCTAAAGTTTACCCGAATTGAC 58.994 41.667 0.00 0.00 0.00 3.18
460 582 5.245584 ACCCTAAAGTTTACCCGAATTGA 57.754 39.130 0.00 0.00 0.00 2.57
461 583 5.970317 AACCCTAAAGTTTACCCGAATTG 57.030 39.130 0.00 0.00 0.00 2.32
462 584 6.015180 GGAAAACCCTAAAGTTTACCCGAATT 60.015 38.462 0.00 0.00 39.00 2.17
463 585 5.477984 GGAAAACCCTAAAGTTTACCCGAAT 59.522 40.000 0.00 0.00 39.00 3.34
464 586 4.826733 GGAAAACCCTAAAGTTTACCCGAA 59.173 41.667 0.00 0.00 39.00 4.30
465 587 4.141298 TGGAAAACCCTAAAGTTTACCCGA 60.141 41.667 0.00 0.00 39.00 5.14
466 588 4.143543 TGGAAAACCCTAAAGTTTACCCG 58.856 43.478 0.00 0.00 39.00 5.28
467 589 5.568023 GCATGGAAAACCCTAAAGTTTACCC 60.568 44.000 0.00 0.00 39.00 3.69
468 590 5.011227 TGCATGGAAAACCCTAAAGTTTACC 59.989 40.000 0.00 0.00 39.00 2.85
469 591 6.091718 TGCATGGAAAACCCTAAAGTTTAC 57.908 37.500 0.00 0.00 39.00 2.01
470 592 6.732896 TTGCATGGAAAACCCTAAAGTTTA 57.267 33.333 0.00 0.00 39.00 2.01
471 593 5.622346 TTGCATGGAAAACCCTAAAGTTT 57.378 34.783 0.00 0.00 41.67 2.66
472 594 5.622346 TTTGCATGGAAAACCCTAAAGTT 57.378 34.783 10.24 0.00 35.38 2.66
473 595 5.130311 ACTTTTGCATGGAAAACCCTAAAGT 59.870 36.000 19.76 12.07 35.38 2.66
474 596 5.466393 CACTTTTGCATGGAAAACCCTAAAG 59.534 40.000 19.76 11.47 35.38 1.85
475 597 5.363939 CACTTTTGCATGGAAAACCCTAAA 58.636 37.500 19.76 0.00 35.38 1.85
476 598 4.954875 CACTTTTGCATGGAAAACCCTAA 58.045 39.130 19.76 0.46 35.38 2.69
477 599 4.599047 CACTTTTGCATGGAAAACCCTA 57.401 40.909 19.76 1.17 35.38 3.53
478 600 3.473923 CACTTTTGCATGGAAAACCCT 57.526 42.857 19.76 4.24 35.38 4.34
491 613 0.868406 GAGGTCGTCAGGCACTTTTG 59.132 55.000 0.00 0.00 34.60 2.44
492 614 0.250338 GGAGGTCGTCAGGCACTTTT 60.250 55.000 0.00 0.00 34.60 2.27
493 615 1.371558 GGAGGTCGTCAGGCACTTT 59.628 57.895 0.00 0.00 34.60 2.66
494 616 1.837051 TGGAGGTCGTCAGGCACTT 60.837 57.895 0.00 0.00 34.60 3.16
495 617 2.203640 TGGAGGTCGTCAGGCACT 60.204 61.111 0.00 0.00 43.88 4.40
496 618 2.048127 GTGGAGGTCGTCAGGCAC 60.048 66.667 0.00 0.00 0.00 5.01
497 619 3.680786 CGTGGAGGTCGTCAGGCA 61.681 66.667 0.00 0.00 0.00 4.75
498 620 2.710724 AAACGTGGAGGTCGTCAGGC 62.711 60.000 0.00 0.00 40.69 4.85
499 621 0.666577 GAAACGTGGAGGTCGTCAGG 60.667 60.000 0.00 0.00 40.69 3.86
500 622 1.002250 CGAAACGTGGAGGTCGTCAG 61.002 60.000 0.00 0.00 40.69 3.51
501 623 1.008194 CGAAACGTGGAGGTCGTCA 60.008 57.895 0.00 0.00 40.69 4.35
502 624 0.595825 AACGAAACGTGGAGGTCGTC 60.596 55.000 10.54 0.00 41.67 4.20
503 625 0.595825 GAACGAAACGTGGAGGTCGT 60.596 55.000 0.00 0.00 43.45 4.34
504 626 0.595567 TGAACGAAACGTGGAGGTCG 60.596 55.000 0.00 0.00 39.99 4.79
505 627 1.792006 ATGAACGAAACGTGGAGGTC 58.208 50.000 0.00 0.00 39.99 3.85
506 628 2.680577 GTATGAACGAAACGTGGAGGT 58.319 47.619 0.00 0.00 39.99 3.85
519 641 4.454504 ACCAAGGAAACATGACGTATGAAC 59.545 41.667 0.00 0.00 39.21 3.18
520 642 4.647611 ACCAAGGAAACATGACGTATGAA 58.352 39.130 0.00 0.00 39.21 2.57
521 643 4.280436 ACCAAGGAAACATGACGTATGA 57.720 40.909 0.00 0.00 39.21 2.15
522 644 5.153513 CAAACCAAGGAAACATGACGTATG 58.846 41.667 0.00 0.00 42.68 2.39
523 645 4.320935 GCAAACCAAGGAAACATGACGTAT 60.321 41.667 0.00 0.00 0.00 3.06
524 646 3.003897 GCAAACCAAGGAAACATGACGTA 59.996 43.478 0.00 0.00 0.00 3.57
525 647 2.223711 GCAAACCAAGGAAACATGACGT 60.224 45.455 0.00 0.00 0.00 4.34
526 648 2.223688 TGCAAACCAAGGAAACATGACG 60.224 45.455 0.00 0.00 0.00 4.35
527 649 3.123050 GTGCAAACCAAGGAAACATGAC 58.877 45.455 0.00 0.00 0.00 3.06
528 650 2.762887 TGTGCAAACCAAGGAAACATGA 59.237 40.909 0.00 0.00 0.00 3.07
529 651 3.176552 TGTGCAAACCAAGGAAACATG 57.823 42.857 0.00 0.00 0.00 3.21
530 652 3.902881 TTGTGCAAACCAAGGAAACAT 57.097 38.095 0.00 0.00 0.00 2.71
531 653 3.685139 TTTGTGCAAACCAAGGAAACA 57.315 38.095 0.00 0.00 0.00 2.83
532 654 7.602265 ACATATATTTGTGCAAACCAAGGAAAC 59.398 33.333 0.00 0.00 32.51 2.78
533 655 7.675062 ACATATATTTGTGCAAACCAAGGAAA 58.325 30.769 0.00 0.00 32.51 3.13
534 656 7.238486 ACATATATTTGTGCAAACCAAGGAA 57.762 32.000 0.00 0.00 32.51 3.36
535 657 6.849085 ACATATATTTGTGCAAACCAAGGA 57.151 33.333 0.00 0.00 32.51 3.36
536 658 7.064490 GGAAACATATATTTGTGCAAACCAAGG 59.936 37.037 0.00 0.00 32.51 3.61
537 659 7.818930 AGGAAACATATATTTGTGCAAACCAAG 59.181 33.333 0.00 0.00 32.51 3.61
538 660 7.675062 AGGAAACATATATTTGTGCAAACCAA 58.325 30.769 0.00 0.00 32.51 3.67
539 661 7.238486 AGGAAACATATATTTGTGCAAACCA 57.762 32.000 0.00 0.00 32.51 3.67
540 662 6.756542 GGAGGAAACATATATTTGTGCAAACC 59.243 38.462 0.00 0.00 32.51 3.27
541 663 7.319646 TGGAGGAAACATATATTTGTGCAAAC 58.680 34.615 0.00 0.00 32.51 2.93
542 664 7.473735 TGGAGGAAACATATATTTGTGCAAA 57.526 32.000 0.00 0.00 34.46 3.68
543 665 7.473735 TTGGAGGAAACATATATTTGTGCAA 57.526 32.000 0.00 0.00 0.00 4.08
544 666 7.363705 CCTTTGGAGGAAACATATATTTGTGCA 60.364 37.037 0.00 0.00 46.74 4.57
545 667 6.980397 CCTTTGGAGGAAACATATATTTGTGC 59.020 38.462 0.00 0.00 46.74 4.57
586 708 9.555727 TCTTAAGGATTTTGCTATACGCTATTT 57.444 29.630 1.85 0.00 40.11 1.40
587 709 8.989980 GTCTTAAGGATTTTGCTATACGCTATT 58.010 33.333 1.85 0.00 40.11 1.73
588 710 7.328737 CGTCTTAAGGATTTTGCTATACGCTAT 59.671 37.037 1.85 0.00 40.11 2.97
589 711 6.639686 CGTCTTAAGGATTTTGCTATACGCTA 59.360 38.462 1.85 0.00 40.11 4.26
590 712 5.462398 CGTCTTAAGGATTTTGCTATACGCT 59.538 40.000 1.85 0.00 40.11 5.07
591 713 5.333111 CCGTCTTAAGGATTTTGCTATACGC 60.333 44.000 1.85 0.00 39.77 4.42
592 714 5.176958 CCCGTCTTAAGGATTTTGCTATACG 59.823 44.000 1.85 0.56 0.00 3.06
593 715 6.202379 GTCCCGTCTTAAGGATTTTGCTATAC 59.798 42.308 1.85 0.00 33.88 1.47
594 716 6.285990 GTCCCGTCTTAAGGATTTTGCTATA 58.714 40.000 1.85 0.00 33.88 1.31
595 717 5.123936 GTCCCGTCTTAAGGATTTTGCTAT 58.876 41.667 1.85 0.00 33.88 2.97
596 718 4.510571 GTCCCGTCTTAAGGATTTTGCTA 58.489 43.478 1.85 0.00 33.88 3.49
597 719 3.344515 GTCCCGTCTTAAGGATTTTGCT 58.655 45.455 1.85 0.00 33.88 3.91
598 720 2.095372 CGTCCCGTCTTAAGGATTTTGC 59.905 50.000 1.85 0.00 33.88 3.68
599 721 3.592059 TCGTCCCGTCTTAAGGATTTTG 58.408 45.455 1.85 0.00 33.88 2.44
600 722 3.967332 TCGTCCCGTCTTAAGGATTTT 57.033 42.857 1.85 0.00 33.88 1.82
601 723 3.967332 TTCGTCCCGTCTTAAGGATTT 57.033 42.857 1.85 0.00 33.88 2.17
602 724 3.007182 TGTTTCGTCCCGTCTTAAGGATT 59.993 43.478 1.85 0.00 33.88 3.01
603 725 2.564062 TGTTTCGTCCCGTCTTAAGGAT 59.436 45.455 1.85 0.00 33.88 3.24
604 726 1.962807 TGTTTCGTCCCGTCTTAAGGA 59.037 47.619 1.85 0.00 0.00 3.36
605 727 2.443887 TGTTTCGTCCCGTCTTAAGG 57.556 50.000 1.85 0.00 0.00 2.69
606 728 3.363673 GCTTTGTTTCGTCCCGTCTTAAG 60.364 47.826 0.00 0.00 0.00 1.85
607 729 2.545106 GCTTTGTTTCGTCCCGTCTTAA 59.455 45.455 0.00 0.00 0.00 1.85
608 730 2.137523 GCTTTGTTTCGTCCCGTCTTA 58.862 47.619 0.00 0.00 0.00 2.10
609 731 0.942252 GCTTTGTTTCGTCCCGTCTT 59.058 50.000 0.00 0.00 0.00 3.01
610 732 1.219522 CGCTTTGTTTCGTCCCGTCT 61.220 55.000 0.00 0.00 0.00 4.18
611 733 1.203313 CGCTTTGTTTCGTCCCGTC 59.797 57.895 0.00 0.00 0.00 4.79
612 734 2.248835 CCGCTTTGTTTCGTCCCGT 61.249 57.895 0.00 0.00 0.00 5.28
613 735 1.500512 TTCCGCTTTGTTTCGTCCCG 61.501 55.000 0.00 0.00 0.00 5.14
614 736 0.040692 GTTCCGCTTTGTTTCGTCCC 60.041 55.000 0.00 0.00 0.00 4.46
615 737 0.040692 GGTTCCGCTTTGTTTCGTCC 60.041 55.000 0.00 0.00 0.00 4.79
616 738 0.658897 TGGTTCCGCTTTGTTTCGTC 59.341 50.000 0.00 0.00 0.00 4.20
617 739 1.096416 TTGGTTCCGCTTTGTTTCGT 58.904 45.000 0.00 0.00 0.00 3.85
618 740 2.196295 TTTGGTTCCGCTTTGTTTCG 57.804 45.000 0.00 0.00 0.00 3.46
619 741 3.712187 TGATTTGGTTCCGCTTTGTTTC 58.288 40.909 0.00 0.00 0.00 2.78
620 742 3.810310 TGATTTGGTTCCGCTTTGTTT 57.190 38.095 0.00 0.00 0.00 2.83
621 743 3.383185 TCTTGATTTGGTTCCGCTTTGTT 59.617 39.130 0.00 0.00 0.00 2.83
622 744 2.955660 TCTTGATTTGGTTCCGCTTTGT 59.044 40.909 0.00 0.00 0.00 2.83
623 745 3.641437 TCTTGATTTGGTTCCGCTTTG 57.359 42.857 0.00 0.00 0.00 2.77
624 746 4.871933 ATTCTTGATTTGGTTCCGCTTT 57.128 36.364 0.00 0.00 0.00 3.51
625 747 4.157840 GGTATTCTTGATTTGGTTCCGCTT 59.842 41.667 0.00 0.00 0.00 4.68
626 748 3.694566 GGTATTCTTGATTTGGTTCCGCT 59.305 43.478 0.00 0.00 0.00 5.52
627 749 3.694566 AGGTATTCTTGATTTGGTTCCGC 59.305 43.478 0.00 0.00 0.00 5.54
628 750 7.255139 GGAATAGGTATTCTTGATTTGGTTCCG 60.255 40.741 9.13 0.00 41.33 4.30
629 751 7.014326 GGGAATAGGTATTCTTGATTTGGTTCC 59.986 40.741 9.13 0.00 41.33 3.62
630 752 7.780271 AGGGAATAGGTATTCTTGATTTGGTTC 59.220 37.037 9.13 0.00 41.33 3.62
631 753 7.652554 AGGGAATAGGTATTCTTGATTTGGTT 58.347 34.615 9.13 0.00 41.33 3.67
632 754 7.226059 AGGGAATAGGTATTCTTGATTTGGT 57.774 36.000 9.13 0.00 41.33 3.67
633 755 8.539117 AAAGGGAATAGGTATTCTTGATTTGG 57.461 34.615 9.13 0.00 41.33 3.28
693 815 9.575868 CGGGGTATTATCTACATCTACATCTAT 57.424 37.037 0.00 0.00 0.00 1.98
694 816 7.501559 GCGGGGTATTATCTACATCTACATCTA 59.498 40.741 0.00 0.00 0.00 1.98
695 817 6.321690 GCGGGGTATTATCTACATCTACATCT 59.678 42.308 0.00 0.00 0.00 2.90
696 818 6.096423 TGCGGGGTATTATCTACATCTACATC 59.904 42.308 0.00 0.00 0.00 3.06
697 819 5.955959 TGCGGGGTATTATCTACATCTACAT 59.044 40.000 0.00 0.00 0.00 2.29
698 820 5.326900 TGCGGGGTATTATCTACATCTACA 58.673 41.667 0.00 0.00 0.00 2.74
699 821 5.909621 TGCGGGGTATTATCTACATCTAC 57.090 43.478 0.00 0.00 0.00 2.59
700 822 6.921486 TTTGCGGGGTATTATCTACATCTA 57.079 37.500 0.00 0.00 0.00 1.98
701 823 5.818678 TTTGCGGGGTATTATCTACATCT 57.181 39.130 0.00 0.00 0.00 2.90
702 824 6.870971 TTTTTGCGGGGTATTATCTACATC 57.129 37.500 0.00 0.00 0.00 3.06
754 877 3.121113 CACGGCGCAAATCCTTTAAAAAG 59.879 43.478 10.83 0.00 35.79 2.27
762 885 2.033448 TTCCACGGCGCAAATCCT 59.967 55.556 10.83 0.00 0.00 3.24
764 887 0.729140 CAAGTTCCACGGCGCAAATC 60.729 55.000 10.83 0.00 0.00 2.17
769 892 3.423154 CCTCAAGTTCCACGGCGC 61.423 66.667 6.90 0.00 0.00 6.53
770 893 2.027625 GACCTCAAGTTCCACGGCG 61.028 63.158 4.80 4.80 0.00 6.46
771 894 0.250338 AAGACCTCAAGTTCCACGGC 60.250 55.000 0.00 0.00 0.00 5.68
774 897 2.618709 CACCAAAGACCTCAAGTTCCAC 59.381 50.000 0.00 0.00 0.00 4.02
777 900 2.297701 TGCACCAAAGACCTCAAGTTC 58.702 47.619 0.00 0.00 0.00 3.01
782 905 3.181445 ACTTGTATGCACCAAAGACCTCA 60.181 43.478 10.22 0.00 0.00 3.86
783 906 3.412386 ACTTGTATGCACCAAAGACCTC 58.588 45.455 10.22 0.00 0.00 3.85
788 911 6.978080 ACAAAAAGTACTTGTATGCACCAAAG 59.022 34.615 9.34 0.00 35.26 2.77
811 934 7.844493 TCCTTTAGTTAACCACTCTCTAACA 57.156 36.000 0.88 0.00 36.88 2.41
816 939 9.327628 GGATTATTCCTTTAGTTAACCACTCTC 57.672 37.037 0.88 0.00 39.14 3.20
817 940 8.832735 TGGATTATTCCTTTAGTTAACCACTCT 58.167 33.333 0.88 0.00 43.07 3.24
818 941 9.110502 CTGGATTATTCCTTTAGTTAACCACTC 57.889 37.037 0.88 0.00 43.07 3.51
819 942 8.053355 CCTGGATTATTCCTTTAGTTAACCACT 58.947 37.037 0.88 0.00 43.07 4.00
858 984 3.204827 CATGGGCTTTCTCCGGCG 61.205 66.667 0.00 0.00 0.00 6.46
859 985 2.044946 ACATGGGCTTTCTCCGGC 60.045 61.111 0.00 0.00 0.00 6.13
860 986 1.002134 ACACATGGGCTTTCTCCGG 60.002 57.895 0.00 0.00 0.00 5.14
861 987 0.321564 TGACACATGGGCTTTCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
862 988 2.019984 GATGACACATGGGCTTTCTCC 58.980 52.381 0.00 0.00 0.00 3.71
869 996 3.598019 ACAATTTGATGACACATGGGC 57.402 42.857 2.79 0.00 0.00 5.36
887 1014 3.357203 TGTTTGGTTACAAGCCTCAACA 58.643 40.909 0.00 0.00 37.04 3.33
888 1015 4.298332 CATGTTTGGTTACAAGCCTCAAC 58.702 43.478 0.00 0.00 37.04 3.18
890 1017 2.295909 GCATGTTTGGTTACAAGCCTCA 59.704 45.455 0.00 0.00 36.90 3.86
898 1025 4.270008 ACAGATAGGGCATGTTTGGTTAC 58.730 43.478 0.00 0.00 0.00 2.50
944 1073 2.524640 TGTGTGTGGCCGTCCCTA 60.525 61.111 0.00 0.00 0.00 3.53
945 1074 4.250305 GTGTGTGTGGCCGTCCCT 62.250 66.667 0.00 0.00 0.00 4.20
946 1075 4.250305 AGTGTGTGTGGCCGTCCC 62.250 66.667 0.00 0.00 0.00 4.46
947 1076 2.372040 TACAGTGTGTGTGGCCGTCC 62.372 60.000 5.88 0.00 40.69 4.79
974 1103 8.591114 TTTCTAGCAAGGAGTATGTTAGTACT 57.409 34.615 0.00 0.00 37.61 2.73
975 1104 9.819267 ATTTTCTAGCAAGGAGTATGTTAGTAC 57.181 33.333 0.00 0.00 34.41 2.73
977 1106 7.770897 CCATTTTCTAGCAAGGAGTATGTTAGT 59.229 37.037 0.00 0.00 34.41 2.24
978 1107 7.254932 GCCATTTTCTAGCAAGGAGTATGTTAG 60.255 40.741 0.00 0.00 34.16 2.34
979 1108 6.542370 GCCATTTTCTAGCAAGGAGTATGTTA 59.458 38.462 0.00 0.00 0.00 2.41
980 1109 5.358160 GCCATTTTCTAGCAAGGAGTATGTT 59.642 40.000 0.00 0.00 0.00 2.71
982 1111 4.276926 GGCCATTTTCTAGCAAGGAGTATG 59.723 45.833 0.00 0.00 0.00 2.39
1017 1146 2.117941 AAACCGACGCAAGCAAGAGC 62.118 55.000 0.00 0.00 45.62 4.09
1074 1203 1.965930 CTTGTTGCCGCTGCCTGTA 60.966 57.895 0.00 0.00 36.33 2.74
1100 1229 1.077068 AGGTGTGTGGTGGTTGTGG 60.077 57.895 0.00 0.00 0.00 4.17
1113 1242 2.884639 GTGCATGTAAAAGTGGAGGTGT 59.115 45.455 0.00 0.00 0.00 4.16
1188 1317 1.844771 CGTCGTCGCCGGTGGATATA 61.845 60.000 16.49 0.00 33.95 0.86
1209 1338 2.126071 GCCGTCTTCAGCGCTGTA 60.126 61.111 34.70 25.75 0.00 2.74
1567 1740 3.248171 CGCGCCAAGCTAGTCGTC 61.248 66.667 0.00 0.00 45.59 4.20
1610 1787 4.214758 ACAAGCAATTACAAGTAACCCGTC 59.785 41.667 0.00 0.00 0.00 4.79
1631 1808 8.500753 AATACGAAGGCAGTGAAAAATATACA 57.499 30.769 0.00 0.00 0.00 2.29
1673 1853 1.079197 TGTAGCACATGAGGCCACG 60.079 57.895 5.01 0.00 0.00 4.94
1674 1854 0.036010 ACTGTAGCACATGAGGCCAC 60.036 55.000 5.01 0.00 0.00 5.01
1680 1860 4.450082 ACGTGATTACTGTAGCACATGA 57.550 40.909 17.31 0.00 0.00 3.07
1689 1869 6.293244 GGAAAAAGTAGCAACGTGATTACTGT 60.293 38.462 6.82 0.28 0.00 3.55
1699 1879 2.041244 GCAACGGAAAAAGTAGCAACG 58.959 47.619 0.00 0.00 0.00 4.10
1719 1899 2.165301 GGGCAACGCGCTACTGTAG 61.165 63.158 5.73 10.48 41.91 2.74
1763 1972 3.582164 AGGGGTTTATTTGCCAAACAGA 58.418 40.909 0.00 0.00 37.57 3.41
1794 2003 2.641815 GGCTCCTCCCATCATTGATAGT 59.358 50.000 0.00 0.00 0.00 2.12
1795 2004 2.354503 CGGCTCCTCCCATCATTGATAG 60.355 54.545 0.00 0.00 0.00 2.08
1796 2005 1.625315 CGGCTCCTCCCATCATTGATA 59.375 52.381 0.00 0.00 0.00 2.15
1797 2006 0.399454 CGGCTCCTCCCATCATTGAT 59.601 55.000 0.00 0.00 0.00 2.57
1800 2009 0.692419 AGACGGCTCCTCCCATCATT 60.692 55.000 0.00 0.00 0.00 2.57
1807 2016 0.968393 ACTCTTGAGACGGCTCCTCC 60.968 60.000 17.58 0.00 40.55 4.30
1814 2023 3.303881 TTCATGTGACTCTTGAGACGG 57.696 47.619 4.49 0.00 33.00 4.79
1852 2061 8.960591 CATGGAATAGAACCTTTCATGTAACTT 58.039 33.333 0.00 0.00 0.00 2.66
1913 2122 9.256228 GGGTAATCCTCCTTTTCTAAAAGAAAT 57.744 33.333 15.16 2.60 46.39 2.17
1914 2123 7.672660 GGGGTAATCCTCCTTTTCTAAAAGAAA 59.327 37.037 15.16 1.37 40.60 2.52
1915 2124 7.179966 GGGGTAATCCTCCTTTTCTAAAAGAA 58.820 38.462 15.16 0.00 40.60 2.52
1916 2125 6.276092 TGGGGTAATCCTCCTTTTCTAAAAGA 59.724 38.462 15.16 3.02 40.60 2.52
1917 2126 6.490492 TGGGGTAATCCTCCTTTTCTAAAAG 58.510 40.000 8.00 8.00 39.31 2.27
1918 2127 6.471942 TGGGGTAATCCTCCTTTTCTAAAA 57.528 37.500 0.00 0.00 32.02 1.52
1919 2128 5.574948 GCTGGGGTAATCCTCCTTTTCTAAA 60.575 44.000 0.00 0.00 32.02 1.85
1920 2129 4.079958 GCTGGGGTAATCCTCCTTTTCTAA 60.080 45.833 0.00 0.00 32.02 2.10
1921 2130 3.458487 GCTGGGGTAATCCTCCTTTTCTA 59.542 47.826 0.00 0.00 32.02 2.10
1922 2131 2.242452 GCTGGGGTAATCCTCCTTTTCT 59.758 50.000 0.00 0.00 32.02 2.52
1923 2132 2.656002 GCTGGGGTAATCCTCCTTTTC 58.344 52.381 0.00 0.00 32.02 2.29
1924 2133 1.288037 GGCTGGGGTAATCCTCCTTTT 59.712 52.381 0.00 0.00 32.02 2.27
1925 2134 0.927029 GGCTGGGGTAATCCTCCTTT 59.073 55.000 0.00 0.00 32.02 3.11
1926 2135 0.046397 AGGCTGGGGTAATCCTCCTT 59.954 55.000 0.00 0.00 32.02 3.36
1927 2136 0.400670 GAGGCTGGGGTAATCCTCCT 60.401 60.000 0.00 0.00 39.27 3.69
1928 2137 0.400670 AGAGGCTGGGGTAATCCTCC 60.401 60.000 0.00 0.00 44.67 4.30
1929 2138 0.761802 CAGAGGCTGGGGTAATCCTC 59.238 60.000 0.00 0.00 44.09 3.71
1930 2139 1.348775 GCAGAGGCTGGGGTAATCCT 61.349 60.000 0.00 0.00 36.96 3.24
1931 2140 1.149401 GCAGAGGCTGGGGTAATCC 59.851 63.158 0.00 0.00 36.96 3.01
1932 2141 0.475906 ATGCAGAGGCTGGGGTAATC 59.524 55.000 0.00 0.00 41.91 1.75
1933 2142 0.475906 GATGCAGAGGCTGGGGTAAT 59.524 55.000 0.00 0.00 41.91 1.89
1934 2143 0.621571 AGATGCAGAGGCTGGGGTAA 60.622 55.000 0.00 0.00 41.91 2.85
1935 2144 0.264657 TAGATGCAGAGGCTGGGGTA 59.735 55.000 0.00 0.00 41.91 3.69
1936 2145 1.003442 TAGATGCAGAGGCTGGGGT 59.997 57.895 0.00 0.00 41.91 4.95
1937 2146 0.762082 TCTAGATGCAGAGGCTGGGG 60.762 60.000 0.00 0.00 41.91 4.96
1938 2147 0.392336 GTCTAGATGCAGAGGCTGGG 59.608 60.000 0.00 0.00 41.91 4.45
1939 2148 1.117994 TGTCTAGATGCAGAGGCTGG 58.882 55.000 0.00 0.00 41.91 4.85
1940 2149 2.093816 TGTTGTCTAGATGCAGAGGCTG 60.094 50.000 0.00 0.00 41.91 4.85
1941 2150 2.093764 GTGTTGTCTAGATGCAGAGGCT 60.094 50.000 0.00 0.00 41.91 4.58
1942 2151 2.275318 GTGTTGTCTAGATGCAGAGGC 58.725 52.381 0.00 0.00 41.68 4.70
1943 2152 3.599730 TGTGTTGTCTAGATGCAGAGG 57.400 47.619 0.00 0.00 0.00 3.69
1944 2153 4.502016 ACATGTGTTGTCTAGATGCAGAG 58.498 43.478 0.00 0.00 30.89 3.35
1945 2154 4.541973 ACATGTGTTGTCTAGATGCAGA 57.458 40.909 0.00 0.00 30.89 4.26
1956 2165 1.618837 AGGAGTAGCGACATGTGTTGT 59.381 47.619 1.15 0.00 42.79 3.32
1962 2171 2.887783 AGTGGATAGGAGTAGCGACATG 59.112 50.000 0.00 0.00 0.00 3.21
1963 2172 3.231207 AGTGGATAGGAGTAGCGACAT 57.769 47.619 0.00 0.00 0.00 3.06
1998 2215 5.983720 GCGATTCTGTTTAGTATTAGGCTCA 59.016 40.000 0.00 0.00 0.00 4.26
2010 2227 3.886505 AGGTTTTGGTGCGATTCTGTTTA 59.113 39.130 0.00 0.00 0.00 2.01
2029 2247 3.118371 CCCTTCGGCTTTAGATGTTAGGT 60.118 47.826 0.00 0.00 0.00 3.08
2060 2278 4.827835 TGAGAGTGTATCTAGTATGTGGCC 59.172 45.833 0.00 0.00 38.84 5.36
2092 2332 0.677288 ATTGGTGGAAGACGACGACA 59.323 50.000 0.00 0.00 0.00 4.35
2097 2337 2.187958 AGATGGATTGGTGGAAGACGA 58.812 47.619 0.00 0.00 0.00 4.20
2139 2379 1.277273 CAGAGAGGCCTGACAATGTCA 59.723 52.381 12.00 15.88 40.50 3.58
2180 2420 0.241213 CGAAAGAGGACGCTGTCTGA 59.759 55.000 8.26 0.00 32.47 3.27
2195 2435 1.632046 GAAATGGACTCGCGCCGAAA 61.632 55.000 0.00 0.00 34.74 3.46
2197 2437 2.508439 GAAATGGACTCGCGCCGA 60.508 61.111 0.00 1.17 0.00 5.54
2199 2439 2.813908 ACGAAATGGACTCGCGCC 60.814 61.111 0.00 0.00 39.97 6.53
2223 2464 2.678934 TAGCGGAGACTGGGCGTT 60.679 61.111 0.00 0.00 0.00 4.84
2240 2481 4.329545 ATCTTGGTGGCGTGGCGT 62.330 61.111 0.00 0.00 0.00 5.68
2327 2568 2.680805 CGCCATTCTTGGAGGTGTACAT 60.681 50.000 0.00 0.00 46.92 2.29
2346 2587 2.915137 TTTCCACCTTTGGGGCGC 60.915 61.111 0.00 0.00 44.11 6.53
2358 2599 1.757682 AAGCTTTGGTGTCGTTTCCA 58.242 45.000 0.00 0.00 0.00 3.53
2372 2613 3.443045 CGGATGGCGGCAAAGCTT 61.443 61.111 18.31 0.00 37.29 3.74
2376 2617 0.531974 GTAGATCGGATGGCGGCAAA 60.532 55.000 18.31 2.06 0.00 3.68
2378 2619 1.832608 AGTAGATCGGATGGCGGCA 60.833 57.895 16.34 16.34 0.00 5.69
2383 2624 6.582677 ACTCTAAATCAGTAGATCGGATGG 57.417 41.667 0.00 0.00 31.90 3.51
2465 2706 3.664276 CGGCACTCTTTTGTGTCATTACG 60.664 47.826 0.00 0.00 42.13 3.18
2503 2744 1.549170 ACCTCGTTCTCGGCTTGTTAT 59.451 47.619 0.00 0.00 37.69 1.89
2504 2745 0.963962 ACCTCGTTCTCGGCTTGTTA 59.036 50.000 0.00 0.00 37.69 2.41
2536 2778 1.071542 TGATGGAGGTTTGTCAAGCGA 59.928 47.619 0.00 0.00 35.40 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.