Multiple sequence alignment - TraesCS4B01G106900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G106900 chr4B 100.000 2979 0 0 1 2979 116484936 116481958 0.000000e+00 5502.0
1 TraesCS4B01G106900 chr4B 100.000 2702 0 0 3309 6010 116481628 116478927 0.000000e+00 4990.0
2 TraesCS4B01G106900 chr4D 95.208 2212 70 13 3321 5509 82460992 82458794 0.000000e+00 3465.0
3 TraesCS4B01G106900 chr4D 95.745 1175 40 3 1372 2544 82462812 82461646 0.000000e+00 1884.0
4 TraesCS4B01G106900 chr4D 90.421 1305 97 14 55 1344 82464097 82462806 0.000000e+00 1692.0
5 TraesCS4B01G106900 chr4D 82.907 626 93 9 44 664 114426249 114426865 8.800000e-153 551.0
6 TraesCS4B01G106900 chr4D 93.617 235 15 0 5661 5895 82458730 82458496 9.580000e-93 351.0
7 TraesCS4B01G106900 chr4D 96.410 195 6 1 2597 2790 82461648 82461454 2.700000e-83 320.0
8 TraesCS4B01G106900 chr4D 94.949 99 5 0 1501 1599 12354796 12354698 8.070000e-34 156.0
9 TraesCS4B01G106900 chr4D 91.667 108 8 1 1503 1610 482704210 482704104 1.350000e-31 148.0
10 TraesCS4B01G106900 chr4D 100.000 72 0 0 2829 2900 82461455 82461384 3.780000e-27 134.0
11 TraesCS4B01G106900 chr4A 93.919 1957 69 19 3309 5238 492940343 492938410 0.000000e+00 2909.0
12 TraesCS4B01G106900 chr4A 97.189 1174 30 3 1808 2979 492941831 492940659 0.000000e+00 1982.0
13 TraesCS4B01G106900 chr4A 95.219 753 30 4 1073 1822 492942769 492942020 0.000000e+00 1186.0
14 TraesCS4B01G106900 chr4A 96.460 226 7 1 821 1045 492943358 492943133 7.360000e-99 372.0
15 TraesCS4B01G106900 chr4A 86.188 181 11 8 5301 5481 492922952 492922786 3.700000e-42 183.0
16 TraesCS4B01G106900 chr4A 93.443 122 8 0 695 816 492943716 492943595 1.330000e-41 182.0
17 TraesCS4B01G106900 chr4A 94.872 39 2 0 5258 5296 492938419 492938381 1.810000e-05 62.1
18 TraesCS4B01G106900 chr5D 84.345 626 91 5 34 653 505372190 505371566 1.850000e-169 606.0
19 TraesCS4B01G106900 chr5D 85.121 578 80 4 85 656 382425702 382425125 2.410000e-163 586.0
20 TraesCS4B01G106900 chr5D 93.333 105 7 0 1503 1607 526139177 526139281 8.070000e-34 156.0
21 TraesCS4B01G106900 chr3D 83.912 634 92 8 34 659 562513986 562514617 1.110000e-166 597.0
22 TraesCS4B01G106900 chr3D 82.567 631 96 10 34 654 601003840 601004466 1.470000e-150 544.0
23 TraesCS4B01G106900 chr3D 96.850 127 4 0 5537 5663 504269025 504269151 4.720000e-51 213.0
24 TraesCS4B01G106900 chr7D 82.830 629 98 8 43 664 595869694 595869069 6.810000e-154 555.0
25 TraesCS4B01G106900 chr7D 82.484 628 103 5 34 654 136414290 136414917 1.470000e-150 544.0
26 TraesCS4B01G106900 chr7D 96.078 102 4 0 1501 1602 190163117 190163218 3.730000e-37 167.0
27 TraesCS4B01G106900 chr2A 82.437 632 104 5 34 658 765574496 765573865 4.100000e-151 545.0
28 TraesCS4B01G106900 chr2A 94.483 145 6 2 5524 5668 20004792 20004650 7.840000e-54 222.0
29 TraesCS4B01G106900 chr1A 82.876 619 94 9 44 654 410441159 410441773 4.100000e-151 545.0
30 TraesCS4B01G106900 chr6B 99.231 130 1 0 5536 5665 54420797 54420668 1.010000e-57 235.0
31 TraesCS4B01G106900 chr6B 98.462 130 2 0 5535 5664 646718688 646718559 4.690000e-56 230.0
32 TraesCS4B01G106900 chr3A 99.213 127 1 0 5538 5664 69626040 69626166 4.690000e-56 230.0
33 TraesCS4B01G106900 chr3A 97.727 132 2 1 5534 5665 31653022 31653152 6.060000e-55 226.0
34 TraesCS4B01G106900 chr3A 81.188 101 13 5 4471 4568 652566785 652566688 6.460000e-10 76.8
35 TraesCS4B01G106900 chr5B 97.037 135 4 0 5531 5665 598032802 598032936 1.690000e-55 228.0
36 TraesCS4B01G106900 chr2B 98.450 129 2 0 5537 5665 507831646 507831774 1.690000e-55 228.0
37 TraesCS4B01G106900 chr2B 96.296 135 5 0 5535 5669 712620227 712620361 7.840000e-54 222.0
38 TraesCS4B01G106900 chr2D 95.098 102 5 0 1498 1599 445894879 445894980 1.730000e-35 161.0
39 TraesCS4B01G106900 chr6A 96.809 94 3 0 1501 1594 617690038 617690131 2.240000e-34 158.0
40 TraesCS4B01G106900 chr6D 92.381 105 8 0 1502 1606 465968962 465968858 3.750000e-32 150.0
41 TraesCS4B01G106900 chr5A 81.250 144 21 5 4225 4366 19626468 19626607 1.770000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G106900 chr4B 116478927 116484936 6009 True 5246.000000 5502 100.000000 1 6010 2 chr4B.!!$R1 6009
1 TraesCS4B01G106900 chr4D 82458496 82464097 5601 True 1307.666667 3465 95.233500 55 5895 6 chr4D.!!$R3 5840
2 TraesCS4B01G106900 chr4D 114426249 114426865 616 False 551.000000 551 82.907000 44 664 1 chr4D.!!$F1 620
3 TraesCS4B01G106900 chr4A 492938381 492943716 5335 True 1115.516667 2909 95.183667 695 5296 6 chr4A.!!$R2 4601
4 TraesCS4B01G106900 chr5D 505371566 505372190 624 True 606.000000 606 84.345000 34 653 1 chr5D.!!$R2 619
5 TraesCS4B01G106900 chr5D 382425125 382425702 577 True 586.000000 586 85.121000 85 656 1 chr5D.!!$R1 571
6 TraesCS4B01G106900 chr3D 562513986 562514617 631 False 597.000000 597 83.912000 34 659 1 chr3D.!!$F2 625
7 TraesCS4B01G106900 chr3D 601003840 601004466 626 False 544.000000 544 82.567000 34 654 1 chr3D.!!$F3 620
8 TraesCS4B01G106900 chr7D 595869069 595869694 625 True 555.000000 555 82.830000 43 664 1 chr7D.!!$R1 621
9 TraesCS4B01G106900 chr7D 136414290 136414917 627 False 544.000000 544 82.484000 34 654 1 chr7D.!!$F1 620
10 TraesCS4B01G106900 chr2A 765573865 765574496 631 True 545.000000 545 82.437000 34 658 1 chr2A.!!$R2 624
11 TraesCS4B01G106900 chr1A 410441159 410441773 614 False 545.000000 545 82.876000 44 654 1 chr1A.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 419 0.101399 CTACTCTTCATCGGCAGCGT 59.899 55.0 0.00 0.0 0.0 5.07 F
416 422 0.798776 CTCTTCATCGGCAGCGTTTT 59.201 50.0 0.00 0.0 0.0 2.43 F
1324 1917 1.329913 CCAGGGCCCCATTGCTTTAC 61.330 60.0 21.43 0.0 0.0 2.01 F
2355 3161 2.234908 ACTGTTGTAGCCTGGATGAGTC 59.765 50.0 0.00 0.0 0.0 3.36 F
3977 4786 0.546122 TGAAGCAGACAACAGGGTGT 59.454 50.0 0.00 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 3040 0.257039 ACAGATGGAGTGGGAATGGC 59.743 55.000 0.00 0.0 0.00 4.40 R
2371 3177 8.797350 AAGAATCATTATCATGTTCTGACACA 57.203 30.769 0.00 0.0 38.91 3.72 R
2704 3511 2.489722 CTCCTACTTTTTGGCCTCTTGC 59.510 50.000 3.32 0.0 40.16 4.01 R
4036 4845 0.764369 TCTTGGGCTGACTCACTGGT 60.764 55.000 0.00 0.0 0.00 4.00 R
5918 6810 0.178975 TTTGTAAGCCACCACAGGGG 60.179 55.000 0.00 0.0 44.81 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.673641 TGGCAATGAATTATTTTATCCCTGT 57.326 32.000 0.00 0.00 0.00 4.00
32 33 8.088463 TGGCAATGAATTATTTTATCCCTGTT 57.912 30.769 0.00 0.00 0.00 3.16
59 60 5.600669 AAAGTTTAGGATTCCTCCACCTT 57.399 39.130 8.94 4.93 44.79 3.50
64 65 0.618981 GGATTCCTCCACCTTCCGTT 59.381 55.000 0.00 0.00 41.64 4.44
258 264 1.757340 CCCTGTCTAGTCCCCGTCC 60.757 68.421 0.00 0.00 0.00 4.79
351 357 2.094338 GGTCGGATCTGGTCGTAGTTTT 60.094 50.000 0.62 0.00 0.00 2.43
413 419 0.101399 CTACTCTTCATCGGCAGCGT 59.899 55.000 0.00 0.00 0.00 5.07
416 422 0.798776 CTCTTCATCGGCAGCGTTTT 59.201 50.000 0.00 0.00 0.00 2.43
465 472 4.421948 CTTTAGCACGACGACTTCCTAAT 58.578 43.478 0.00 0.00 0.00 1.73
512 519 3.741476 CAGCGAGGCAAGGGCAAC 61.741 66.667 0.00 0.00 43.71 4.17
517 524 3.876589 GAGGCAAGGGCAACGACGA 62.877 63.158 0.00 0.00 43.71 4.20
551 559 2.103042 CCGCTCCAGTGCTTGTAGC 61.103 63.158 0.00 0.00 42.82 3.58
584 592 5.282510 GTGGTCTACGGATCTGAATGTAAG 58.717 45.833 9.00 0.00 0.00 2.34
625 633 6.017026 TGTTCGTTGTACTGCCATGATTAAAA 60.017 34.615 0.00 0.00 0.00 1.52
673 683 8.947115 CGAAAAAGAAGTATTTGATCCCTAACT 58.053 33.333 0.00 0.00 0.00 2.24
1105 1697 4.301662 TGCCCCCTTCCCTTCCCT 62.302 66.667 0.00 0.00 0.00 4.20
1224 1817 7.042658 CGCTACTTTCTCATAAGGGTTTATGAC 60.043 40.741 6.01 0.00 46.32 3.06
1249 1842 4.411256 TTTAGCGAAAATCGGATACCCT 57.589 40.909 1.64 0.00 40.84 4.34
1250 1843 2.240493 AGCGAAAATCGGATACCCTG 57.760 50.000 1.64 0.00 40.84 4.45
1283 1876 4.890158 TCGGTGATGCATATAGATGGTT 57.110 40.909 0.00 0.00 33.26 3.67
1320 1913 4.066139 GTCCAGGGCCCCATTGCT 62.066 66.667 21.43 0.00 0.00 3.91
1324 1917 1.329913 CCAGGGCCCCATTGCTTTAC 61.330 60.000 21.43 0.00 0.00 2.01
1395 1990 2.289694 ACTGATTACGTTGCAAGGCTCT 60.290 45.455 18.61 3.53 0.00 4.09
1411 2006 3.137533 GGCTCTATTTGACTCATCTGGC 58.862 50.000 0.00 0.00 0.00 4.85
1412 2007 3.137533 GCTCTATTTGACTCATCTGGCC 58.862 50.000 0.00 0.00 0.00 5.36
1422 2017 2.438975 ATCTGGCCCATGTGTGCG 60.439 61.111 0.00 0.00 0.00 5.34
1617 2212 6.749118 GGTAGTACTAGTTAACATGTTCACCG 59.251 42.308 15.85 10.75 0.00 4.94
1689 2291 4.861462 CACATATCTAGTCATCACATCGGC 59.139 45.833 0.00 0.00 0.00 5.54
1714 2316 5.064707 GCGTTGGTGCTATCTAGATGAAAAA 59.935 40.000 15.79 0.12 0.00 1.94
1768 2370 7.428472 GCTTTTTGAGGATTAAACTGCGTATAC 59.572 37.037 0.00 0.00 0.00 1.47
1806 2611 8.800332 AGGCTTCATAGATTTTAATGGCTATTG 58.200 33.333 5.42 0.00 0.00 1.90
1844 2649 7.576856 GCTTAGGTTTTTGGCACATACTAACAT 60.577 37.037 0.00 0.00 39.30 2.71
1931 2736 6.677781 TTTATGTGATTTGTAGCCTAGTGC 57.322 37.500 0.00 0.00 41.71 4.40
1954 2759 7.420002 TGCATTGCACTCATTATCAAGTTATC 58.580 34.615 7.38 0.00 31.71 1.75
2044 2850 5.392767 TGGTTTGCAGTTTGTTGAACTTA 57.607 34.783 0.00 0.00 46.34 2.24
2220 3026 9.715121 CTTGCCCGGTAGATTATTTTATAGTAA 57.285 33.333 0.00 0.00 0.00 2.24
2222 3028 9.661563 TGCCCGGTAGATTATTTTATAGTAATG 57.338 33.333 0.00 0.00 0.00 1.90
2355 3161 2.234908 ACTGTTGTAGCCTGGATGAGTC 59.765 50.000 0.00 0.00 0.00 3.36
2593 3399 7.072454 AGGCCTGAACTATTGATCCTTTGTATA 59.928 37.037 3.11 0.00 0.00 1.47
2704 3511 0.612732 TCCCAGATGGCTTGCAAAGG 60.613 55.000 0.00 0.00 46.35 3.11
2970 3778 4.927267 ATCAAGACAAACTGGATACCCA 57.073 40.909 0.00 0.00 37.50 4.51
3341 4150 6.691508 AGCAAATAATTGGTCTTGGAGAAAC 58.308 36.000 0.00 0.00 43.50 2.78
3362 4171 4.747810 ACTTTGTATGCTTATTTGCTGCC 58.252 39.130 0.00 0.00 0.00 4.85
3438 4247 1.610522 GCTTGCGCATATTTGGATCCT 59.389 47.619 12.75 0.00 35.78 3.24
3565 4374 3.547054 TTGTTCGTTGGTAGGTCAGTT 57.453 42.857 0.00 0.00 0.00 3.16
3847 4656 8.132995 TGATCTTAATGATGATGCACATGTTTC 58.867 33.333 0.00 0.00 39.56 2.78
3875 4684 4.445452 TTACGGTTATCTGACTGACCAC 57.555 45.455 6.70 0.00 32.41 4.16
3880 4689 3.997021 GGTTATCTGACTGACCACTTGTG 59.003 47.826 0.00 0.00 32.41 3.33
3893 4702 3.827302 ACCACTTGTGGTGTCTAGTAGAG 59.173 47.826 22.89 0.00 43.94 2.43
3970 4779 5.424121 AATGTACTGTTGAAGCAGACAAC 57.576 39.130 11.72 11.72 45.07 3.32
3975 4784 1.680338 GTTGAAGCAGACAACAGGGT 58.320 50.000 13.11 0.00 44.49 4.34
3976 4785 1.334869 GTTGAAGCAGACAACAGGGTG 59.665 52.381 13.11 0.00 44.49 4.61
3977 4786 0.546122 TGAAGCAGACAACAGGGTGT 59.454 50.000 0.00 0.00 0.00 4.16
4036 4845 7.921304 AGATTATGCCATGAATAGTGTCCATA 58.079 34.615 0.00 0.00 0.00 2.74
4156 4965 3.444916 AGTGATGTGTATTTAGCGGTCG 58.555 45.455 0.00 0.00 0.00 4.79
4173 4982 2.943033 GGTCGTTGTCATTTATCCTGGG 59.057 50.000 0.00 0.00 0.00 4.45
4303 5112 5.731599 TGCATTTGTTTAAAAGCAACCAG 57.268 34.783 0.84 0.00 44.57 4.00
4370 5179 5.466127 ACCATGTAAGGGATAACACCAAT 57.534 39.130 0.00 0.00 43.46 3.16
4443 5254 2.243994 AGCCCTATAACCCCCTGTTTTC 59.756 50.000 0.00 0.00 38.42 2.29
4447 5258 5.338632 CCCTATAACCCCCTGTTTTCTTTT 58.661 41.667 0.00 0.00 38.42 2.27
4451 5262 7.287005 CCTATAACCCCCTGTTTTCTTTTATCC 59.713 40.741 0.00 0.00 38.42 2.59
4454 5265 4.838423 ACCCCCTGTTTTCTTTTATCCTTG 59.162 41.667 0.00 0.00 0.00 3.61
4461 5272 6.581712 TGTTTTCTTTTATCCTTGCTTTGCT 58.418 32.000 0.00 0.00 0.00 3.91
4509 5320 2.231215 ATGAAATCGAAGAGCGGGAG 57.769 50.000 0.00 0.00 43.63 4.30
4816 5627 8.311650 TGTTCTACTTAACAAATGCTTCTCTC 57.688 34.615 0.00 0.00 36.45 3.20
4915 5726 6.209192 TCATGCATTCCAAGTGTATGTTTCTT 59.791 34.615 0.00 0.00 39.64 2.52
4928 5739 9.701098 AGTGTATGTTTCTTACGTCATCTTTAA 57.299 29.630 0.00 0.00 0.00 1.52
5000 5811 1.627329 AGGGAAAGGAGTACCGAAACC 59.373 52.381 0.00 0.00 41.83 3.27
5077 5913 5.813513 AGGCAGTGGAAAATTTCATCTTT 57.186 34.783 8.09 0.00 0.00 2.52
5155 5991 1.876322 GCTTATGCAGCCGAGAGAAT 58.124 50.000 0.00 0.00 43.65 2.40
5236 6072 8.565896 TTCTAGAATTGTTGTGTATGCATCTT 57.434 30.769 0.19 0.00 0.00 2.40
5292 6128 5.070981 TGGACTGGAATGATCTCAATAGTCC 59.929 44.000 21.63 21.63 41.53 3.85
5374 6228 8.472413 AGTAAGAACAATGCTTGCATAATGATT 58.528 29.630 8.61 4.91 31.49 2.57
5409 6264 3.799137 TCGCACTTTTTCCGAATGTAC 57.201 42.857 0.00 0.00 0.00 2.90
5410 6265 3.132160 TCGCACTTTTTCCGAATGTACA 58.868 40.909 0.00 0.00 0.00 2.90
5411 6266 3.560481 TCGCACTTTTTCCGAATGTACAA 59.440 39.130 0.00 0.00 0.00 2.41
5511 6403 5.294799 ACTCTCACGTAGCAGAGTTATACTG 59.705 44.000 15.05 0.00 45.94 2.74
5517 6409 5.879223 ACGTAGCAGAGTTATACTGTACTGT 59.121 40.000 10.46 10.46 37.64 3.55
5546 6438 9.930693 CTAAACATTATGAATAGTACTCCCTCC 57.069 37.037 0.00 0.00 0.00 4.30
5547 6439 6.591750 ACATTATGAATAGTACTCCCTCCG 57.408 41.667 0.00 0.00 0.00 4.63
5548 6440 6.075984 ACATTATGAATAGTACTCCCTCCGT 58.924 40.000 0.00 0.00 0.00 4.69
5549 6441 6.553852 ACATTATGAATAGTACTCCCTCCGTT 59.446 38.462 0.00 0.00 0.00 4.44
5550 6442 6.645790 TTATGAATAGTACTCCCTCCGTTC 57.354 41.667 0.00 0.00 0.00 3.95
5551 6443 3.294214 TGAATAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
5552 6444 1.978454 ATAGTACTCCCTCCGTTCCG 58.022 55.000 0.00 0.00 0.00 4.30
5553 6445 0.911769 TAGTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
5554 6446 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
5555 6447 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
5556 6448 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
5557 6449 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
5558 6450 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
5559 6451 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
5560 6452 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
5561 6453 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5562 6454 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5563 6455 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5564 6456 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
5565 6457 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
5566 6458 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
5567 6459 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
5568 6460 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
5569 6461 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
5570 6462 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
5571 6463 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
5572 6464 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
5573 6465 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
5574 6466 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
5575 6467 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
5576 6468 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
5577 6469 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
5578 6470 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
5579 6471 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
5581 6473 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
5582 6474 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
5583 6475 8.037758 ACTTGTCTTGGATTTGTCTAGATACAG 58.962 37.037 0.00 0.00 0.00 2.74
5584 6476 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
5585 6477 8.311395 TGTCTTGGATTTGTCTAGATACAGAT 57.689 34.615 0.00 0.00 0.00 2.90
5586 6478 8.200120 TGTCTTGGATTTGTCTAGATACAGATG 58.800 37.037 0.00 0.00 0.00 2.90
5587 6479 8.200792 GTCTTGGATTTGTCTAGATACAGATGT 58.799 37.037 0.00 0.00 0.00 3.06
5588 6480 9.421399 TCTTGGATTTGTCTAGATACAGATGTA 57.579 33.333 0.00 0.00 34.67 2.29
5618 6510 9.717942 AGACTCATTTTAATGCTAGATACATCC 57.282 33.333 0.00 0.00 36.36 3.51
5619 6511 8.539770 ACTCATTTTAATGCTAGATACATCCG 57.460 34.615 0.00 0.00 36.36 4.18
5620 6512 8.150945 ACTCATTTTAATGCTAGATACATCCGT 58.849 33.333 0.00 0.00 36.36 4.69
5621 6513 9.639601 CTCATTTTAATGCTAGATACATCCGTA 57.360 33.333 0.00 0.00 36.36 4.02
5635 6527 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
5636 6528 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
5637 6529 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
5638 6530 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
5639 6531 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
5640 6532 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
5641 6533 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
5642 6534 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
5643 6535 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
5644 6536 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
5645 6537 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
5647 6539 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
5648 6540 9.793259 TCTAGACAAATCCAAGACAAGTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
5649 6541 9.831737 CTAGACAAATCCAAGACAAGTAATTTG 57.168 33.333 0.00 0.00 42.68 2.32
5650 6542 7.661040 AGACAAATCCAAGACAAGTAATTTGG 58.339 34.615 9.60 0.00 41.25 3.28
5654 6546 5.682943 TCCAAGACAAGTAATTTGGAACG 57.317 39.130 2.52 0.00 44.38 3.95
5655 6547 4.517453 TCCAAGACAAGTAATTTGGAACGG 59.483 41.667 2.52 0.00 44.38 4.44
5656 6548 4.517453 CCAAGACAAGTAATTTGGAACGGA 59.483 41.667 0.00 0.00 42.05 4.69
5657 6549 5.334879 CCAAGACAAGTAATTTGGAACGGAG 60.335 44.000 0.00 0.00 42.05 4.63
5658 6550 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
5659 6551 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
5660 6552 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
5661 6553 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
5662 6554 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
5663 6555 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
5664 6556 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
5665 6557 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
5666 6558 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
5667 6559 0.327924 TGGAACGGAGGGAGTACGTA 59.672 55.000 0.00 0.00 40.31 3.57
5668 6560 1.271871 TGGAACGGAGGGAGTACGTAA 60.272 52.381 0.00 0.00 40.31 3.18
5669 6561 1.133216 GGAACGGAGGGAGTACGTAAC 59.867 57.143 0.00 0.00 40.31 2.50
5670 6562 1.812571 GAACGGAGGGAGTACGTAACA 59.187 52.381 0.00 0.00 40.31 2.41
5707 6599 5.413833 GCCTACAAAAGTAAAGGTAGTTCCC 59.586 44.000 0.00 0.00 36.75 3.97
5785 6677 5.118990 TGTCAGCAATAAATCTCTGTAGCC 58.881 41.667 0.00 0.00 0.00 3.93
5790 6682 4.693283 CAATAAATCTCTGTAGCCCGACA 58.307 43.478 0.00 0.00 0.00 4.35
5804 6696 2.032290 GCCCGACAAACAGTTAGTGAAC 60.032 50.000 0.00 0.00 35.64 3.18
5805 6697 3.199677 CCCGACAAACAGTTAGTGAACA 58.800 45.455 0.00 0.00 38.10 3.18
5823 6715 3.955771 ACATCGCACTTTTTACGTGTT 57.044 38.095 0.00 0.00 34.91 3.32
5872 6764 3.169099 TGTGGGATGTGTTAATTTGGGG 58.831 45.455 0.00 0.00 0.00 4.96
5884 6776 1.995376 ATTTGGGGAGCGTTCACTTT 58.005 45.000 0.26 0.00 0.00 2.66
5886 6778 0.472471 TTGGGGAGCGTTCACTTTCT 59.528 50.000 0.26 0.00 0.00 2.52
5892 6784 2.029290 GGAGCGTTCACTTTCTGTAGGA 60.029 50.000 0.53 0.00 0.00 2.94
5895 6787 2.157863 GCGTTCACTTTCTGTAGGAAGC 59.842 50.000 0.00 0.00 35.16 3.86
5896 6788 2.737252 CGTTCACTTTCTGTAGGAAGCC 59.263 50.000 0.00 0.00 35.16 4.35
5897 6789 2.737252 GTTCACTTTCTGTAGGAAGCCG 59.263 50.000 0.00 0.00 35.16 5.52
5898 6790 1.079503 CACTTTCTGTAGGAAGCCGC 58.920 55.000 0.00 0.00 35.16 6.53
5899 6791 0.389948 ACTTTCTGTAGGAAGCCGCG 60.390 55.000 0.00 0.00 35.16 6.46
5900 6792 0.389948 CTTTCTGTAGGAAGCCGCGT 60.390 55.000 4.92 0.00 35.16 6.01
5901 6793 0.034337 TTTCTGTAGGAAGCCGCGTT 59.966 50.000 4.92 0.00 35.16 4.84
5902 6794 0.669318 TTCTGTAGGAAGCCGCGTTG 60.669 55.000 4.92 0.00 0.00 4.10
5903 6795 1.080093 CTGTAGGAAGCCGCGTTGA 60.080 57.895 4.92 0.00 0.00 3.18
5904 6796 0.460284 CTGTAGGAAGCCGCGTTGAT 60.460 55.000 4.92 0.00 0.00 2.57
5905 6797 0.459585 TGTAGGAAGCCGCGTTGATC 60.460 55.000 4.92 0.00 0.00 2.92
5906 6798 0.179108 GTAGGAAGCCGCGTTGATCT 60.179 55.000 4.92 0.00 0.00 2.75
5907 6799 1.066605 GTAGGAAGCCGCGTTGATCTA 59.933 52.381 4.92 0.00 0.00 1.98
5908 6800 0.753262 AGGAAGCCGCGTTGATCTAT 59.247 50.000 4.92 0.00 0.00 1.98
5909 6801 1.961394 AGGAAGCCGCGTTGATCTATA 59.039 47.619 4.92 0.00 0.00 1.31
5910 6802 2.364324 AGGAAGCCGCGTTGATCTATAA 59.636 45.455 4.92 0.00 0.00 0.98
5911 6803 3.128349 GGAAGCCGCGTTGATCTATAAA 58.872 45.455 4.92 0.00 0.00 1.40
5912 6804 3.746492 GGAAGCCGCGTTGATCTATAAAT 59.254 43.478 4.92 0.00 0.00 1.40
5913 6805 4.927425 GGAAGCCGCGTTGATCTATAAATA 59.073 41.667 4.92 0.00 0.00 1.40
5914 6806 5.407387 GGAAGCCGCGTTGATCTATAAATAA 59.593 40.000 4.92 0.00 0.00 1.40
5915 6807 6.401153 GGAAGCCGCGTTGATCTATAAATAAG 60.401 42.308 4.92 0.00 0.00 1.73
5916 6808 5.779922 AGCCGCGTTGATCTATAAATAAGA 58.220 37.500 4.92 0.00 0.00 2.10
5917 6809 5.864474 AGCCGCGTTGATCTATAAATAAGAG 59.136 40.000 4.92 0.00 0.00 2.85
5918 6810 5.444745 GCCGCGTTGATCTATAAATAAGAGC 60.445 44.000 4.92 0.00 0.00 4.09
5919 6811 5.062308 CCGCGTTGATCTATAAATAAGAGCC 59.938 44.000 4.92 0.00 0.00 4.70
5920 6812 5.062308 CGCGTTGATCTATAAATAAGAGCCC 59.938 44.000 0.00 0.00 0.00 5.19
5921 6813 5.351740 GCGTTGATCTATAAATAAGAGCCCC 59.648 44.000 0.00 0.00 0.00 5.80
5922 6814 6.702329 CGTTGATCTATAAATAAGAGCCCCT 58.298 40.000 0.00 0.00 0.00 4.79
5923 6815 6.591834 CGTTGATCTATAAATAAGAGCCCCTG 59.408 42.308 0.00 0.00 0.00 4.45
5924 6816 7.454225 GTTGATCTATAAATAAGAGCCCCTGT 58.546 38.462 0.00 0.00 0.00 4.00
5925 6817 7.009179 TGATCTATAAATAAGAGCCCCTGTG 57.991 40.000 0.00 0.00 0.00 3.66
5926 6818 5.825593 TCTATAAATAAGAGCCCCTGTGG 57.174 43.478 0.00 0.00 37.09 4.17
5927 6819 5.224441 TCTATAAATAAGAGCCCCTGTGGT 58.776 41.667 0.00 0.00 36.04 4.16
5928 6820 2.514458 AAATAAGAGCCCCTGTGGTG 57.486 50.000 0.00 0.00 36.04 4.17
5929 6821 0.625849 AATAAGAGCCCCTGTGGTGG 59.374 55.000 0.00 0.00 36.04 4.61
5934 6826 2.361230 GCCCCTGTGGTGGCTTAC 60.361 66.667 8.26 0.00 44.46 2.34
5935 6827 3.166434 CCCCTGTGGTGGCTTACA 58.834 61.111 0.00 0.00 0.00 2.41
5936 6828 1.458486 CCCCTGTGGTGGCTTACAA 59.542 57.895 0.00 0.00 0.00 2.41
5937 6829 0.178975 CCCCTGTGGTGGCTTACAAA 60.179 55.000 0.00 0.00 0.00 2.83
5938 6830 1.549950 CCCCTGTGGTGGCTTACAAAT 60.550 52.381 0.00 0.00 0.00 2.32
5939 6831 2.247358 CCCTGTGGTGGCTTACAAATT 58.753 47.619 0.00 0.00 0.00 1.82
5940 6832 2.029110 CCCTGTGGTGGCTTACAAATTG 60.029 50.000 0.00 0.00 0.00 2.32
5941 6833 2.029110 CCTGTGGTGGCTTACAAATTGG 60.029 50.000 0.00 0.00 0.00 3.16
5942 6834 2.627699 CTGTGGTGGCTTACAAATTGGT 59.372 45.455 0.00 0.00 0.00 3.67
5943 6835 2.363680 TGTGGTGGCTTACAAATTGGTG 59.636 45.455 0.00 0.00 0.00 4.17
5944 6836 2.364002 GTGGTGGCTTACAAATTGGTGT 59.636 45.455 0.00 0.00 35.43 4.16
5945 6837 3.570550 GTGGTGGCTTACAAATTGGTGTA 59.429 43.478 0.00 0.00 32.75 2.90
5946 6838 3.823873 TGGTGGCTTACAAATTGGTGTAG 59.176 43.478 0.00 0.00 35.47 2.74
5947 6839 3.192633 GGTGGCTTACAAATTGGTGTAGG 59.807 47.826 0.00 0.00 35.47 3.18
5948 6840 3.192633 GTGGCTTACAAATTGGTGTAGGG 59.807 47.826 0.00 0.00 35.47 3.53
5949 6841 2.758423 GGCTTACAAATTGGTGTAGGGG 59.242 50.000 0.00 0.00 35.47 4.79
5950 6842 2.165641 GCTTACAAATTGGTGTAGGGGC 59.834 50.000 0.00 0.00 35.47 5.80
5951 6843 3.426615 CTTACAAATTGGTGTAGGGGCA 58.573 45.455 0.00 0.00 35.47 5.36
5952 6844 1.627864 ACAAATTGGTGTAGGGGCAC 58.372 50.000 0.00 0.00 38.56 5.01
5976 6868 6.639671 CGCAGGTGCTCTTATTAATAGATC 57.360 41.667 0.00 0.00 39.32 2.75
5977 6869 6.159293 CGCAGGTGCTCTTATTAATAGATCA 58.841 40.000 0.00 0.00 39.32 2.92
5978 6870 6.646653 CGCAGGTGCTCTTATTAATAGATCAA 59.353 38.462 0.00 0.00 39.32 2.57
5979 6871 7.359598 CGCAGGTGCTCTTATTAATAGATCAAC 60.360 40.741 0.00 1.70 39.32 3.18
5980 6872 7.359598 GCAGGTGCTCTTATTAATAGATCAACG 60.360 40.741 0.00 0.00 32.26 4.10
5981 6873 6.647067 AGGTGCTCTTATTAATAGATCAACGC 59.353 38.462 0.00 0.00 32.26 4.84
5982 6874 6.400091 GGTGCTCTTATTAATAGATCAACGCG 60.400 42.308 3.53 3.53 0.00 6.01
5983 6875 5.633601 TGCTCTTATTAATAGATCAACGCGG 59.366 40.000 12.47 0.00 0.00 6.46
5984 6876 5.444745 GCTCTTATTAATAGATCAACGCGGC 60.445 44.000 12.47 0.00 0.00 6.53
5985 6877 5.779922 TCTTATTAATAGATCAACGCGGCT 58.220 37.500 12.47 1.81 0.00 5.52
5986 6878 6.220930 TCTTATTAATAGATCAACGCGGCTT 58.779 36.000 12.47 0.00 0.00 4.35
5987 6879 6.704493 TCTTATTAATAGATCAACGCGGCTTT 59.296 34.615 12.47 0.00 0.00 3.51
5988 6880 5.751243 ATTAATAGATCAACGCGGCTTTT 57.249 34.783 12.47 3.90 0.00 2.27
5989 6881 6.854496 ATTAATAGATCAACGCGGCTTTTA 57.146 33.333 12.47 2.97 0.00 1.52
5990 6882 6.854496 TTAATAGATCAACGCGGCTTTTAT 57.146 33.333 12.47 0.00 0.00 1.40
5991 6883 5.751243 AATAGATCAACGCGGCTTTTATT 57.249 34.783 12.47 4.73 0.00 1.40
5992 6884 6.854496 AATAGATCAACGCGGCTTTTATTA 57.146 33.333 12.47 0.00 0.00 0.98
5993 6885 6.854496 ATAGATCAACGCGGCTTTTATTAA 57.146 33.333 12.47 0.00 0.00 1.40
5994 6886 5.751243 AGATCAACGCGGCTTTTATTAAT 57.249 34.783 12.47 0.00 0.00 1.40
5995 6887 6.854496 AGATCAACGCGGCTTTTATTAATA 57.146 33.333 12.47 0.00 0.00 0.98
5996 6888 6.888430 AGATCAACGCGGCTTTTATTAATAG 58.112 36.000 12.47 0.00 0.00 1.73
5997 6889 4.839796 TCAACGCGGCTTTTATTAATAGC 58.160 39.130 12.47 9.58 0.00 2.97
6008 6900 9.639601 GGCTTTTATTAATAGCCCATGTTTATC 57.360 33.333 20.97 0.00 46.94 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.378504 ACAGGGATAAAATAATTCATTGCCATA 57.621 29.630 0.00 0.00 0.00 2.74
6 7 8.266363 ACAGGGATAAAATAATTCATTGCCAT 57.734 30.769 0.00 0.00 0.00 4.40
7 8 7.673641 ACAGGGATAAAATAATTCATTGCCA 57.326 32.000 0.00 0.00 0.00 4.92
24 25 9.244292 GAATCCTAAACTTTTCTTAACAGGGAT 57.756 33.333 0.00 0.00 0.00 3.85
25 26 7.668469 GGAATCCTAAACTTTTCTTAACAGGGA 59.332 37.037 0.00 0.00 0.00 4.20
26 27 7.670140 AGGAATCCTAAACTTTTCTTAACAGGG 59.330 37.037 0.00 0.00 28.47 4.45
27 28 8.637196 AGGAATCCTAAACTTTTCTTAACAGG 57.363 34.615 0.00 0.00 28.47 4.00
28 29 8.731605 GGAGGAATCCTAAACTTTTCTTAACAG 58.268 37.037 0.00 0.00 31.76 3.16
29 30 8.221944 TGGAGGAATCCTAAACTTTTCTTAACA 58.778 33.333 0.00 0.00 31.76 2.41
30 31 8.512956 GTGGAGGAATCCTAAACTTTTCTTAAC 58.487 37.037 0.00 0.00 31.76 2.01
31 32 7.668469 GGTGGAGGAATCCTAAACTTTTCTTAA 59.332 37.037 0.00 0.00 31.76 1.85
32 33 7.018249 AGGTGGAGGAATCCTAAACTTTTCTTA 59.982 37.037 0.00 0.00 31.76 2.10
72 73 0.904865 AAGATGAGGTGGAGCGGTGA 60.905 55.000 0.00 0.00 0.00 4.02
74 75 1.901085 GAAGATGAGGTGGAGCGGT 59.099 57.895 0.00 0.00 0.00 5.68
78 79 1.539929 GCCATCGAAGATGAGGTGGAG 60.540 57.143 11.22 0.00 45.12 3.86
258 264 3.589654 ATGCTCGACACACCACCGG 62.590 63.158 0.00 0.00 0.00 5.28
271 277 2.969238 CGCCCACCGATGATGCTC 60.969 66.667 0.00 0.00 40.02 4.26
308 314 4.338879 CAAATCCACCAAAGTCAGATCCT 58.661 43.478 0.00 0.00 0.00 3.24
316 322 1.144093 TCCGACCAAATCCACCAAAGT 59.856 47.619 0.00 0.00 0.00 2.66
351 357 3.696281 TGAAGACACACGAACGTAGAA 57.304 42.857 0.00 0.00 0.00 2.10
413 419 0.662619 CAGCGCAACAGACCAGAAAA 59.337 50.000 11.47 0.00 0.00 2.29
416 422 2.031012 CCAGCGCAACAGACCAGA 59.969 61.111 11.47 0.00 0.00 3.86
465 472 6.508777 GGGCAAAAGTTGTTGTAATAGACAA 58.491 36.000 0.00 0.00 46.03 3.18
503 510 3.411351 CCGTCGTCGTTGCCCTTG 61.411 66.667 0.71 0.00 35.01 3.61
533 541 4.192000 CTACAAGCACTGGAGCGG 57.808 61.111 0.00 0.00 40.15 5.52
551 559 1.726265 GTAGACCACCTAGCGACGG 59.274 63.158 0.00 0.00 0.00 4.79
596 604 1.301423 GGCAGTACAACGAACACCAA 58.699 50.000 0.00 0.00 0.00 3.67
758 775 8.788806 TCATGCCTATTTCGTTTCTTAGAAAAA 58.211 29.630 9.14 1.06 39.42 1.94
817 1072 3.446310 TCGCCTTCGCTAAATCATGTA 57.554 42.857 0.00 0.00 35.26 2.29
818 1073 2.309528 TCGCCTTCGCTAAATCATGT 57.690 45.000 0.00 0.00 35.26 3.21
819 1074 2.032549 CCTTCGCCTTCGCTAAATCATG 60.033 50.000 0.00 0.00 35.26 3.07
820 1075 2.213499 CCTTCGCCTTCGCTAAATCAT 58.787 47.619 0.00 0.00 35.26 2.45
821 1076 1.651987 CCTTCGCCTTCGCTAAATCA 58.348 50.000 0.00 0.00 35.26 2.57
822 1077 0.938008 CCCTTCGCCTTCGCTAAATC 59.062 55.000 0.00 0.00 35.26 2.17
1105 1697 4.157105 GGCCTAAAATCGCAGAGGTAAAAA 59.843 41.667 0.00 0.00 43.63 1.94
1233 1826 0.859232 CGCAGGGTATCCGATTTTCG 59.141 55.000 0.00 0.00 40.07 3.46
1249 1842 1.227060 CACCGATGCAGAGATCGCA 60.227 57.895 1.89 0.00 43.22 5.10
1250 1843 0.319383 ATCACCGATGCAGAGATCGC 60.319 55.000 1.89 0.00 43.22 4.58
1283 1876 4.513442 GACCTACTGACAAACCATATGCA 58.487 43.478 0.00 0.00 0.00 3.96
1395 1990 3.202818 ACATGGGCCAGATGAGTCAAATA 59.797 43.478 13.78 0.00 0.00 1.40
1411 2006 3.311080 CGATTTTCGCACACATGGG 57.689 52.632 0.00 0.00 40.10 4.00
1422 2017 3.585862 TCCTCTACACACTGCGATTTTC 58.414 45.455 0.00 0.00 0.00 2.29
1617 2212 4.537433 CCGCCTGCCTAGCACCTC 62.537 72.222 0.00 0.00 33.79 3.85
1689 2291 2.054363 CATCTAGATAGCACCAACGCG 58.946 52.381 3.53 3.53 36.85 6.01
1768 2370 2.879002 TGAAGCCTTCTCTGCTATCG 57.121 50.000 5.96 0.00 38.34 2.92
1806 2611 4.848562 AAACCTAAGCAAACACTAAGCC 57.151 40.909 0.00 0.00 0.00 4.35
1877 2682 8.427012 CACACAAAACACATAACAGCAATAATC 58.573 33.333 0.00 0.00 0.00 1.75
1931 2736 7.073883 CCGATAACTTGATAATGAGTGCAATG 58.926 38.462 0.00 0.00 0.00 2.82
2220 3026 5.010617 GTGGGAATGGCGATTTATAAACCAT 59.989 40.000 11.30 11.30 42.89 3.55
2222 3028 4.583073 AGTGGGAATGGCGATTTATAAACC 59.417 41.667 0.00 0.00 0.00 3.27
2234 3040 0.257039 ACAGATGGAGTGGGAATGGC 59.743 55.000 0.00 0.00 0.00 4.40
2371 3177 8.797350 AAGAATCATTATCATGTTCTGACACA 57.203 30.769 0.00 0.00 38.91 3.72
2593 3399 3.259374 CACTGACCCTAATCACACTGAGT 59.741 47.826 0.00 0.00 0.00 3.41
2704 3511 2.489722 CTCCTACTTTTTGGCCTCTTGC 59.510 50.000 3.32 0.00 40.16 4.01
2706 3513 4.724279 TTCTCCTACTTTTTGGCCTCTT 57.276 40.909 3.32 0.00 0.00 2.85
3341 4150 4.746729 TGGCAGCAAATAAGCATACAAAG 58.253 39.130 0.00 0.00 36.85 2.77
3438 4247 8.291032 CCATTGACGTAACTGTTAAACCATAAA 58.709 33.333 1.10 0.00 0.00 1.40
3565 4374 7.571080 AAGTTAATCCACGAGGTAAAACAAA 57.429 32.000 0.00 0.00 35.89 2.83
3714 4523 4.350368 TGTGTTAAGTGAATCCAGCAGA 57.650 40.909 0.00 0.00 0.00 4.26
3815 4624 8.996271 TGTGCATCATCATTAAGATCAGTATTC 58.004 33.333 0.00 0.00 33.72 1.75
3847 4656 6.741811 GTCAGTCAGATAACCGTAATATAGCG 59.258 42.308 0.00 0.00 0.00 4.26
3875 4684 5.419155 TGAATCCTCTACTAGACACCACAAG 59.581 44.000 0.00 0.00 0.00 3.16
3910 4719 4.037923 TCAACCAAAAGAACAGCATCTTCC 59.962 41.667 0.68 0.00 38.69 3.46
3911 4720 5.009010 TCTCAACCAAAAGAACAGCATCTTC 59.991 40.000 0.68 0.00 38.69 2.87
3970 4779 2.155065 AGGAAACCCTGACACCCTG 58.845 57.895 0.00 0.00 31.48 4.45
3971 4780 4.772118 AGGAAACCCTGACACCCT 57.228 55.556 0.00 0.00 31.48 4.34
4036 4845 0.764369 TCTTGGGCTGACTCACTGGT 60.764 55.000 0.00 0.00 0.00 4.00
4156 4965 3.382083 ACCCCCAGGATAAATGACAAC 57.618 47.619 0.00 0.00 36.73 3.32
4214 5023 7.553044 GTGCCCCAGATAATTTACCTATACATC 59.447 40.741 0.00 0.00 0.00 3.06
4278 5087 5.064452 TGGTTGCTTTTAAACAAATGCACTG 59.936 36.000 9.39 0.00 40.83 3.66
4303 5112 4.768583 TGGGAATAAATGAAATGCAAGGC 58.231 39.130 0.00 0.00 0.00 4.35
4307 5116 9.956640 AGTAAAATTGGGAATAAATGAAATGCA 57.043 25.926 0.00 0.00 0.00 3.96
4400 5209 4.388485 TGTGAGCATGATAGTGTTGTTGT 58.612 39.130 0.00 0.00 0.00 3.32
4443 5254 4.886579 ACCAAGCAAAGCAAGGATAAAAG 58.113 39.130 6.72 0.00 0.00 2.27
4447 5258 5.714333 TGATAAACCAAGCAAAGCAAGGATA 59.286 36.000 6.72 1.48 0.00 2.59
4451 5262 5.125100 TCTGATAAACCAAGCAAAGCAAG 57.875 39.130 0.00 0.00 0.00 4.01
4454 5265 5.713025 TGAATCTGATAAACCAAGCAAAGC 58.287 37.500 0.00 0.00 0.00 3.51
4461 5272 5.943416 ACCACGAATGAATCTGATAAACCAA 59.057 36.000 0.00 0.00 0.00 3.67
4539 5350 6.653989 ACATCATACCTTAGGAAACTCAAGG 58.346 40.000 4.77 0.00 42.28 3.61
4569 5380 9.339492 CAAGAACTCTAGATTCAAAAAGCAATC 57.661 33.333 13.77 0.00 0.00 2.67
4915 5726 6.112734 ACATGCAGGAATTAAAGATGACGTA 58.887 36.000 4.84 0.00 0.00 3.57
4928 5739 8.752187 ACATCACTAAATTTAACATGCAGGAAT 58.248 29.630 4.84 0.00 0.00 3.01
4963 5774 6.936335 CCTTTCCCTGCAAAGTCATAATTTTT 59.064 34.615 0.00 0.00 32.26 1.94
4964 5775 6.269769 TCCTTTCCCTGCAAAGTCATAATTTT 59.730 34.615 0.00 0.00 32.26 1.82
4965 5776 5.779771 TCCTTTCCCTGCAAAGTCATAATTT 59.220 36.000 0.00 0.00 32.26 1.82
4966 5777 5.332743 TCCTTTCCCTGCAAAGTCATAATT 58.667 37.500 0.00 0.00 32.26 1.40
4967 5778 4.934356 TCCTTTCCCTGCAAAGTCATAAT 58.066 39.130 0.00 0.00 32.26 1.28
5000 5811 0.902531 ACAATCCACCCTACTGTCCG 59.097 55.000 0.00 0.00 0.00 4.79
5010 5821 2.566952 GCACAATGCTACAATCCACC 57.433 50.000 0.00 0.00 40.96 4.61
5077 5913 0.674581 CTCAGAATTCGCCACCAGCA 60.675 55.000 0.00 0.00 44.04 4.41
5155 5991 2.244117 GAAGCTCCATGGAGTCGGCA 62.244 60.000 36.32 5.24 43.70 5.69
5230 6066 7.443575 ACTCTCATGGTATCATACAAAAGATGC 59.556 37.037 0.00 0.00 31.33 3.91
5292 6128 5.236047 GTGATGCTGCTATCTTAAGACTTGG 59.764 44.000 7.48 0.00 0.00 3.61
5383 6237 2.422597 TCGGAAAAAGTGCGATCACAT 58.577 42.857 0.00 0.00 46.07 3.21
5384 6238 1.872388 TCGGAAAAAGTGCGATCACA 58.128 45.000 0.00 0.00 46.07 3.58
5389 6243 8.898556 TGTATTGTACATTCGGAAAAAGTGCGA 61.899 37.037 0.00 0.00 40.15 5.10
5390 6244 3.529634 TGTACATTCGGAAAAAGTGCG 57.470 42.857 0.00 0.00 43.49 5.34
5409 6264 9.760660 CGAAGGATCTTTTTAAGAAGTGTATTG 57.239 33.333 5.72 0.00 41.63 1.90
5410 6265 9.503399 ACGAAGGATCTTTTTAAGAAGTGTATT 57.497 29.630 5.72 0.00 41.63 1.89
5411 6266 9.503399 AACGAAGGATCTTTTTAAGAAGTGTAT 57.497 29.630 5.72 0.00 41.63 2.29
5547 6439 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
5548 6440 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
5549 6441 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
5550 6442 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
5551 6443 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
5552 6444 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
5553 6445 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
5555 6447 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
5556 6448 9.031537 TGTATCTAGACAAATCCAAGACAAGTA 57.968 33.333 0.00 0.00 0.00 2.24
5557 6449 7.907389 TGTATCTAGACAAATCCAAGACAAGT 58.093 34.615 0.00 0.00 0.00 3.16
5558 6450 8.253810 TCTGTATCTAGACAAATCCAAGACAAG 58.746 37.037 0.00 0.00 0.00 3.16
5559 6451 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
5560 6452 7.718334 TCTGTATCTAGACAAATCCAAGACA 57.282 36.000 0.00 0.00 0.00 3.41
5561 6453 8.200792 ACATCTGTATCTAGACAAATCCAAGAC 58.799 37.037 0.00 0.00 0.00 3.01
5562 6454 8.311395 ACATCTGTATCTAGACAAATCCAAGA 57.689 34.615 0.00 0.00 0.00 3.02
5592 6484 9.717942 GGATGTATCTAGCATTAAAATGAGTCT 57.282 33.333 6.87 0.00 38.70 3.24
5593 6485 8.651588 CGGATGTATCTAGCATTAAAATGAGTC 58.348 37.037 6.87 0.00 38.70 3.36
5594 6486 8.150945 ACGGATGTATCTAGCATTAAAATGAGT 58.849 33.333 6.87 0.00 38.70 3.41
5595 6487 8.539770 ACGGATGTATCTAGCATTAAAATGAG 57.460 34.615 6.87 0.00 38.70 2.90
5611 6503 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
5612 6504 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
5613 6505 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
5614 6506 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
5615 6507 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
5616 6508 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
5617 6509 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
5618 6510 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
5619 6511 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
5621 6513 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
5622 6514 9.793259 AAATTACTTGTCTTGGATTTGTCTAGA 57.207 29.630 0.00 0.00 0.00 2.43
5623 6515 9.831737 CAAATTACTTGTCTTGGATTTGTCTAG 57.168 33.333 0.00 0.00 32.62 2.43
5624 6516 8.792633 CCAAATTACTTGTCTTGGATTTGTCTA 58.207 33.333 0.00 0.00 40.72 2.59
5625 6517 7.505585 TCCAAATTACTTGTCTTGGATTTGTCT 59.494 33.333 0.00 0.00 41.83 3.41
5626 6518 7.657336 TCCAAATTACTTGTCTTGGATTTGTC 58.343 34.615 0.00 0.00 41.83 3.18
5627 6519 7.595819 TCCAAATTACTTGTCTTGGATTTGT 57.404 32.000 0.00 0.00 41.83 2.83
5628 6520 7.114811 CGTTCCAAATTACTTGTCTTGGATTTG 59.885 37.037 3.38 0.00 45.10 2.32
5629 6521 7.145323 CGTTCCAAATTACTTGTCTTGGATTT 58.855 34.615 3.38 0.00 45.10 2.17
5630 6522 6.294508 CCGTTCCAAATTACTTGTCTTGGATT 60.295 38.462 3.38 0.00 45.10 3.01
5631 6523 5.183140 CCGTTCCAAATTACTTGTCTTGGAT 59.817 40.000 3.38 0.00 45.10 3.41
5632 6524 4.517453 CCGTTCCAAATTACTTGTCTTGGA 59.483 41.667 0.00 0.00 44.32 3.53
5633 6525 4.517453 TCCGTTCCAAATTACTTGTCTTGG 59.483 41.667 0.00 0.00 39.80 3.61
5634 6526 5.334879 CCTCCGTTCCAAATTACTTGTCTTG 60.335 44.000 0.00 0.00 32.65 3.02
5635 6527 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
5636 6528 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
5637 6529 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
5638 6530 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
5639 6531 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
5640 6532 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
5641 6533 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5642 6534 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5643 6535 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
5644 6536 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
5645 6537 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
5646 6538 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
5647 6539 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
5648 6540 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
5649 6541 1.133216 GTTACGTACTCCCTCCGTTCC 59.867 57.143 0.00 0.00 36.12 3.62
5650 6542 1.812571 TGTTACGTACTCCCTCCGTTC 59.187 52.381 0.00 0.00 36.12 3.95
5651 6543 1.815003 CTGTTACGTACTCCCTCCGTT 59.185 52.381 0.00 0.00 36.12 4.44
5652 6544 1.271597 ACTGTTACGTACTCCCTCCGT 60.272 52.381 0.00 0.00 38.53 4.69
5653 6545 1.131883 CACTGTTACGTACTCCCTCCG 59.868 57.143 0.00 0.00 0.00 4.63
5654 6546 2.440409 TCACTGTTACGTACTCCCTCC 58.560 52.381 0.00 0.00 0.00 4.30
5655 6547 3.442977 ACATCACTGTTACGTACTCCCTC 59.557 47.826 0.00 0.00 28.70 4.30
5656 6548 3.428532 ACATCACTGTTACGTACTCCCT 58.571 45.455 0.00 0.00 28.70 4.20
5657 6549 3.863142 ACATCACTGTTACGTACTCCC 57.137 47.619 0.00 0.00 28.70 4.30
5666 6558 4.528987 TGTAGGCCAGTAACATCACTGTTA 59.471 41.667 5.01 0.00 43.77 2.41
5668 6560 2.903784 TGTAGGCCAGTAACATCACTGT 59.096 45.455 5.01 0.00 43.68 3.55
5669 6561 3.610040 TGTAGGCCAGTAACATCACTG 57.390 47.619 5.01 0.00 44.60 3.66
5670 6562 4.634012 TTTGTAGGCCAGTAACATCACT 57.366 40.909 5.01 0.00 0.00 3.41
5733 6625 4.564782 AGAGCATGAAATTGTCTCTCCA 57.435 40.909 0.00 0.00 29.79 3.86
5785 6677 4.376008 CGATGTTCACTAACTGTTTGTCGG 60.376 45.833 4.66 0.00 36.51 4.79
5790 6682 4.127171 AGTGCGATGTTCACTAACTGTTT 58.873 39.130 0.00 0.00 42.45 2.83
5804 6696 4.128554 AGAACACGTAAAAAGTGCGATG 57.871 40.909 0.00 0.00 42.94 3.84
5805 6697 4.746115 TGTAGAACACGTAAAAAGTGCGAT 59.254 37.500 0.00 0.00 42.94 4.58
5823 6715 6.435591 TGTGTTTGCCCATTATCATTTGTAGA 59.564 34.615 0.00 0.00 0.00 2.59
5857 6749 2.802719 ACGCTCCCCAAATTAACACAT 58.197 42.857 0.00 0.00 0.00 3.21
5872 6764 3.299340 TCCTACAGAAAGTGAACGCTC 57.701 47.619 0.00 0.00 0.00 5.03
5884 6776 1.080093 CAACGCGGCTTCCTACAGA 60.080 57.895 12.47 0.00 0.00 3.41
5886 6778 0.459585 GATCAACGCGGCTTCCTACA 60.460 55.000 12.47 0.00 0.00 2.74
5892 6784 6.220930 TCTTATTTATAGATCAACGCGGCTT 58.779 36.000 12.47 0.00 0.00 4.35
5895 6787 5.062308 GGCTCTTATTTATAGATCAACGCGG 59.938 44.000 12.47 0.00 0.00 6.46
5896 6788 5.062308 GGGCTCTTATTTATAGATCAACGCG 59.938 44.000 3.53 3.53 0.00 6.01
5897 6789 5.351740 GGGGCTCTTATTTATAGATCAACGC 59.648 44.000 0.00 0.00 0.00 4.84
5898 6790 6.591834 CAGGGGCTCTTATTTATAGATCAACG 59.408 42.308 0.00 0.00 0.00 4.10
5899 6791 7.389053 CACAGGGGCTCTTATTTATAGATCAAC 59.611 40.741 0.00 0.00 0.00 3.18
5900 6792 7.453393 CACAGGGGCTCTTATTTATAGATCAA 58.547 38.462 0.00 0.00 0.00 2.57
5901 6793 6.013379 CCACAGGGGCTCTTATTTATAGATCA 60.013 42.308 0.00 0.00 0.00 2.92
5902 6794 6.013293 ACCACAGGGGCTCTTATTTATAGATC 60.013 42.308 0.00 0.00 42.05 2.75
5903 6795 5.852250 ACCACAGGGGCTCTTATTTATAGAT 59.148 40.000 0.00 0.00 42.05 1.98
5904 6796 5.071788 CACCACAGGGGCTCTTATTTATAGA 59.928 44.000 0.00 0.00 42.05 1.98
5905 6797 5.308825 CACCACAGGGGCTCTTATTTATAG 58.691 45.833 0.00 0.00 42.05 1.31
5906 6798 4.104102 CCACCACAGGGGCTCTTATTTATA 59.896 45.833 0.00 0.00 42.05 0.98
5907 6799 3.117512 CCACCACAGGGGCTCTTATTTAT 60.118 47.826 0.00 0.00 42.05 1.40
5908 6800 2.241176 CCACCACAGGGGCTCTTATTTA 59.759 50.000 0.00 0.00 42.05 1.40
5909 6801 1.005924 CCACCACAGGGGCTCTTATTT 59.994 52.381 0.00 0.00 42.05 1.40
5910 6802 0.625849 CCACCACAGGGGCTCTTATT 59.374 55.000 0.00 0.00 42.05 1.40
5911 6803 1.926426 GCCACCACAGGGGCTCTTAT 61.926 60.000 0.00 0.00 46.74 1.73
5912 6804 2.602676 GCCACCACAGGGGCTCTTA 61.603 63.158 0.00 0.00 46.74 2.10
5913 6805 3.971702 GCCACCACAGGGGCTCTT 61.972 66.667 0.00 0.00 46.74 2.85
5918 6810 0.178975 TTTGTAAGCCACCACAGGGG 60.179 55.000 0.00 0.00 44.81 4.79
5919 6811 1.923356 ATTTGTAAGCCACCACAGGG 58.077 50.000 0.00 0.00 41.29 4.45
5920 6812 2.029110 CCAATTTGTAAGCCACCACAGG 60.029 50.000 0.00 0.00 0.00 4.00
5921 6813 2.627699 ACCAATTTGTAAGCCACCACAG 59.372 45.455 0.00 0.00 0.00 3.66
5922 6814 2.363680 CACCAATTTGTAAGCCACCACA 59.636 45.455 0.00 0.00 0.00 4.17
5923 6815 2.364002 ACACCAATTTGTAAGCCACCAC 59.636 45.455 0.00 0.00 0.00 4.16
5924 6816 2.672098 ACACCAATTTGTAAGCCACCA 58.328 42.857 0.00 0.00 0.00 4.17
5925 6817 3.192633 CCTACACCAATTTGTAAGCCACC 59.807 47.826 0.00 0.00 31.52 4.61
5926 6818 3.192633 CCCTACACCAATTTGTAAGCCAC 59.807 47.826 0.00 0.00 31.52 5.01
5927 6819 3.426615 CCCTACACCAATTTGTAAGCCA 58.573 45.455 0.00 0.00 31.52 4.75
5928 6820 2.758423 CCCCTACACCAATTTGTAAGCC 59.242 50.000 0.00 0.00 31.52 4.35
5929 6821 2.165641 GCCCCTACACCAATTTGTAAGC 59.834 50.000 0.00 0.00 31.52 3.09
5930 6822 3.192633 GTGCCCCTACACCAATTTGTAAG 59.807 47.826 0.00 0.00 34.35 2.34
5931 6823 3.158676 GTGCCCCTACACCAATTTGTAA 58.841 45.455 0.00 0.00 34.35 2.41
5932 6824 2.797786 GTGCCCCTACACCAATTTGTA 58.202 47.619 0.00 0.00 34.35 2.41
5933 6825 1.627864 GTGCCCCTACACCAATTTGT 58.372 50.000 0.00 0.00 34.35 2.83
5941 6833 4.778143 CCTGCGGTGCCCCTACAC 62.778 72.222 0.00 0.00 39.94 2.90
5954 6846 7.359598 CGTTGATCTATTAATAAGAGCACCTGC 60.360 40.741 10.45 0.00 38.98 4.85
5955 6847 7.359598 GCGTTGATCTATTAATAAGAGCACCTG 60.360 40.741 10.45 6.69 38.98 4.00
5956 6848 6.647067 GCGTTGATCTATTAATAAGAGCACCT 59.353 38.462 10.45 0.00 38.98 4.00
5957 6849 6.400091 CGCGTTGATCTATTAATAAGAGCACC 60.400 42.308 0.00 5.56 38.98 5.01
5958 6850 6.400091 CCGCGTTGATCTATTAATAAGAGCAC 60.400 42.308 4.92 7.15 38.98 4.40
5959 6851 5.633601 CCGCGTTGATCTATTAATAAGAGCA 59.366 40.000 4.92 8.07 37.59 4.26
5960 6852 5.444745 GCCGCGTTGATCTATTAATAAGAGC 60.445 44.000 4.92 0.94 0.00 4.09
5961 6853 5.864474 AGCCGCGTTGATCTATTAATAAGAG 59.136 40.000 4.92 0.00 0.00 2.85
5962 6854 5.779922 AGCCGCGTTGATCTATTAATAAGA 58.220 37.500 4.92 0.00 0.00 2.10
5963 6855 6.467723 AAGCCGCGTTGATCTATTAATAAG 57.532 37.500 4.92 0.00 0.00 1.73
5964 6856 6.854496 AAAGCCGCGTTGATCTATTAATAA 57.146 33.333 4.92 0.00 0.00 1.40
5965 6857 6.854496 AAAAGCCGCGTTGATCTATTAATA 57.146 33.333 4.92 0.00 0.00 0.98
5966 6858 5.751243 AAAAGCCGCGTTGATCTATTAAT 57.249 34.783 4.92 0.00 0.00 1.40
5967 6859 6.854496 ATAAAAGCCGCGTTGATCTATTAA 57.146 33.333 4.92 0.00 0.00 1.40
5968 6860 6.854496 AATAAAAGCCGCGTTGATCTATTA 57.146 33.333 4.92 0.00 0.00 0.98
5969 6861 5.751243 AATAAAAGCCGCGTTGATCTATT 57.249 34.783 4.92 0.00 0.00 1.73
5970 6862 6.854496 TTAATAAAAGCCGCGTTGATCTAT 57.146 33.333 4.92 0.00 0.00 1.98
5971 6863 6.854496 ATTAATAAAAGCCGCGTTGATCTA 57.146 33.333 4.92 0.00 0.00 1.98
5972 6864 5.751243 ATTAATAAAAGCCGCGTTGATCT 57.249 34.783 4.92 0.00 0.00 2.75
5973 6865 5.564127 GCTATTAATAAAAGCCGCGTTGATC 59.436 40.000 4.92 0.00 0.00 2.92
5974 6866 5.449304 GCTATTAATAAAAGCCGCGTTGAT 58.551 37.500 4.92 0.00 0.00 2.57
5975 6867 4.260866 GGCTATTAATAAAAGCCGCGTTGA 60.261 41.667 11.14 0.00 45.82 3.18
5976 6868 3.972502 GGCTATTAATAAAAGCCGCGTTG 59.027 43.478 11.14 0.00 45.82 4.10
5977 6869 4.219143 GGCTATTAATAAAAGCCGCGTT 57.781 40.909 11.14 0.00 45.82 4.84
5978 6870 3.891056 GGCTATTAATAAAAGCCGCGT 57.109 42.857 11.14 0.00 45.82 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.