Multiple sequence alignment - TraesCS4B01G106800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G106800 chr4B 100.000 5680 0 0 1 5680 116331853 116337532 0.000000e+00 10490.0
1 TraesCS4B01G106800 chr4B 98.298 235 4 0 347 581 209058165 209057931 4.100000e-111 412.0
2 TraesCS4B01G106800 chr4B 95.000 220 11 0 1 220 116284358 116284577 4.210000e-91 346.0
3 TraesCS4B01G106800 chr4B 92.063 63 4 1 4962 5023 16092330 16092268 2.820000e-13 87.9
4 TraesCS4B01G106800 chr4B 92.157 51 4 0 1352 1402 116333162 116333212 7.890000e-09 73.1
5 TraesCS4B01G106800 chr4B 92.157 51 4 0 1310 1360 116333204 116333254 7.890000e-09 73.1
6 TraesCS4B01G106800 chr4A 97.498 4076 98 4 870 4942 492888056 492892130 0.000000e+00 6959.0
7 TraesCS4B01G106800 chr4A 87.619 210 15 4 5128 5336 492892244 492892443 3.420000e-57 233.0
8 TraesCS4B01G106800 chr4A 94.286 105 6 0 700 804 492887938 492888042 1.640000e-35 161.0
9 TraesCS4B01G106800 chr4A 89.610 77 8 0 2138 2214 492889403 492889479 1.300000e-16 99.0
10 TraesCS4B01G106800 chr4A 92.157 51 4 0 1352 1402 492888497 492888547 7.890000e-09 73.1
11 TraesCS4B01G106800 chr4D 96.782 2828 56 20 2138 4942 82446310 82449125 0.000000e+00 4686.0
12 TraesCS4B01G106800 chr4D 97.579 1322 31 1 973 2293 82445067 82446388 0.000000e+00 2263.0
13 TraesCS4B01G106800 chr4D 90.033 301 27 2 5380 5680 82450406 82450703 2.480000e-103 387.0
14 TraesCS4B01G106800 chr4D 85.196 358 25 10 5030 5367 82449169 82449518 5.450000e-90 342.0
15 TraesCS4B01G106800 chr4D 94.737 95 5 0 703 797 82444156 82444250 1.280000e-31 148.0
16 TraesCS4B01G106800 chr4D 86.047 86 11 1 2129 2214 82446379 82446463 2.180000e-14 91.6
17 TraesCS4B01G106800 chr4D 92.157 51 4 0 1352 1402 82445404 82445454 7.890000e-09 73.1
18 TraesCS4B01G106800 chr5B 86.296 540 55 7 1352 1875 166835794 166835258 2.300000e-158 569.0
19 TraesCS4B01G106800 chr5B 91.223 319 26 2 2215 2532 166834132 166833815 3.140000e-117 433.0
20 TraesCS4B01G106800 chr5B 89.908 327 32 1 1889 2214 166834381 166834055 2.450000e-113 420.0
21 TraesCS4B01G106800 chr5B 88.400 250 20 1 1111 1360 166835983 166835743 5.570000e-75 292.0
22 TraesCS4B01G106800 chr5B 95.028 181 9 0 4149 4329 166812696 166812516 9.310000e-73 285.0
23 TraesCS4B01G106800 chr5B 95.808 167 7 0 3837 4003 166813196 166813030 2.610000e-68 270.0
24 TraesCS4B01G106800 chr5B 89.785 186 18 1 4450 4634 166812117 166811932 2.650000e-58 237.0
25 TraesCS4B01G106800 chr5B 93.243 148 10 0 4003 4150 166812927 166812780 9.580000e-53 219.0
26 TraesCS4B01G106800 chr5B 96.183 131 5 0 2644 2774 166831837 166831707 1.240000e-51 215.0
27 TraesCS4B01G106800 chr5B 90.972 144 13 0 3695 3838 166813485 166813342 1.610000e-45 195.0
28 TraesCS4B01G106800 chr5B 93.182 132 8 1 2766 2896 166830862 166830731 5.810000e-45 193.0
29 TraesCS4B01G106800 chr5B 93.651 126 7 1 3428 3553 166818298 166818174 2.700000e-43 187.0
30 TraesCS4B01G106800 chr5B 94.783 115 6 0 2531 2645 166832250 166832136 4.520000e-41 180.0
31 TraesCS4B01G106800 chr5B 93.333 90 6 0 3345 3434 166818936 166818847 3.570000e-27 134.0
32 TraesCS4B01G106800 chr5B 94.118 85 5 0 4329 4413 166812397 166812313 4.620000e-26 130.0
33 TraesCS4B01G106800 chr5B 97.368 76 2 0 3275 3350 166819101 166819026 4.620000e-26 130.0
34 TraesCS4B01G106800 chr5B 84.762 105 3 2 4932 5024 599327564 599327461 6.060000e-15 93.5
35 TraesCS4B01G106800 chr5B 96.364 55 2 0 3143 3197 166819904 166819850 2.180000e-14 91.6
36 TraesCS4B01G106800 chr5B 92.857 42 2 1 4928 4969 112057060 112057100 6.150000e-05 60.2
37 TraesCS4B01G106800 chr5A 86.381 536 55 6 1355 1875 177624908 177624376 2.300000e-158 569.0
38 TraesCS4B01G106800 chr5A 99.149 235 2 0 347 581 16561611 16561377 1.890000e-114 424.0
39 TraesCS4B01G106800 chr5A 98.739 238 3 0 344 581 16566383 16566620 1.890000e-114 424.0
40 TraesCS4B01G106800 chr5A 89.969 319 27 3 2215 2532 177622979 177622665 1.910000e-109 407.0
41 TraesCS4B01G106800 chr5A 87.725 334 33 3 1889 2214 177623235 177622902 3.210000e-102 383.0
42 TraesCS4B01G106800 chr5A 95.028 181 9 0 4149 4329 177596716 177596536 9.310000e-73 285.0
43 TraesCS4B01G106800 chr5A 95.808 167 7 0 3837 4003 177597211 177597045 2.610000e-68 270.0
44 TraesCS4B01G106800 chr5A 86.111 216 23 6 4450 4664 177596141 177595932 5.730000e-55 226.0
45 TraesCS4B01G106800 chr5A 93.919 148 9 0 4003 4150 177596942 177596795 2.060000e-54 224.0
46 TraesCS4B01G106800 chr5A 96.947 131 4 0 2644 2774 177620659 177620529 2.660000e-53 220.0
47 TraesCS4B01G106800 chr5A 92.361 144 11 0 3695 3838 177597494 177597351 7.460000e-49 206.0
48 TraesCS4B01G106800 chr5A 93.939 132 7 1 2766 2896 177619802 177619671 1.250000e-46 198.0
49 TraesCS4B01G106800 chr5A 96.522 115 4 0 2531 2645 177621072 177620958 2.090000e-44 191.0
50 TraesCS4B01G106800 chr5A 98.684 76 1 0 3275 3350 177604535 177604460 9.930000e-28 135.0
51 TraesCS4B01G106800 chr5A 93.333 90 6 0 3345 3434 177604370 177604281 3.570000e-27 134.0
52 TraesCS4B01G106800 chr5A 92.941 85 6 0 4329 4413 177596418 177596334 2.150000e-24 124.0
53 TraesCS4B01G106800 chr5A 95.652 69 3 0 3551 3619 177603328 177603260 1.670000e-20 111.0
54 TraesCS4B01G106800 chr5A 91.358 81 7 0 2971 3051 177606068 177605988 1.670000e-20 111.0
55 TraesCS4B01G106800 chr5A 96.364 55 2 0 3143 3197 177605547 177605493 2.180000e-14 91.6
56 TraesCS4B01G106800 chr5D 85.741 540 58 6 1352 1875 169938866 169939402 2.310000e-153 553.0
57 TraesCS4B01G106800 chr5D 91.104 326 26 3 2209 2532 169940513 169940837 6.760000e-119 438.0
58 TraesCS4B01G106800 chr5D 89.297 327 34 1 1889 2214 169940271 169940597 5.300000e-110 409.0
59 TraesCS4B01G106800 chr5D 86.446 332 29 5 1035 1360 169938596 169938917 3.260000e-92 350.0
60 TraesCS4B01G106800 chr5D 88.561 271 31 0 5402 5672 439003160 439003430 4.240000e-86 329.0
61 TraesCS4B01G106800 chr5D 95.028 181 9 0 4149 4329 169971940 169972120 9.310000e-73 285.0
62 TraesCS4B01G106800 chr5D 95.808 167 7 0 3837 4003 169971441 169971607 2.610000e-68 270.0
63 TraesCS4B01G106800 chr5D 90.323 186 17 1 4450 4634 169972604 169972789 5.690000e-60 243.0
64 TraesCS4B01G106800 chr5D 96.947 131 4 0 2644 2774 169947242 169947372 2.660000e-53 220.0
65 TraesCS4B01G106800 chr5D 93.243 148 10 0 4003 4150 169971710 169971857 9.580000e-53 219.0
66 TraesCS4B01G106800 chr5D 93.056 144 10 0 3695 3838 169971154 169971297 1.600000e-50 211.0
67 TraesCS4B01G106800 chr5D 93.182 132 8 1 2766 2896 169948094 169948225 5.810000e-45 193.0
68 TraesCS4B01G106800 chr5D 96.522 115 4 0 2531 2645 169946830 169946944 2.090000e-44 191.0
69 TraesCS4B01G106800 chr5D 98.684 76 1 0 3275 3350 169964725 169964800 9.930000e-28 135.0
70 TraesCS4B01G106800 chr5D 93.333 90 6 0 3345 3434 169964890 169964979 3.570000e-27 134.0
71 TraesCS4B01G106800 chr5D 93.182 88 6 0 4326 4413 169972321 169972408 4.620000e-26 130.0
72 TraesCS4B01G106800 chr5D 93.827 81 5 0 2971 3051 169963386 169963466 7.730000e-24 122.0
73 TraesCS4B01G106800 chr5D 95.714 70 3 0 3551 3620 169965989 169966058 4.650000e-21 113.0
74 TraesCS4B01G106800 chr5D 94.828 58 3 0 3140 3197 169963904 169963961 2.180000e-14 91.6
75 TraesCS4B01G106800 chr5D 88.235 51 3 2 4940 4987 382490904 382490854 2.210000e-04 58.4
76 TraesCS4B01G106800 chrUn 99.149 235 2 0 347 581 410094438 410094204 1.890000e-114 424.0
77 TraesCS4B01G106800 chrUn 92.857 42 2 1 4928 4969 66418721 66418681 6.150000e-05 60.2
78 TraesCS4B01G106800 chr1A 98.739 238 3 0 344 581 238141442 238141679 1.890000e-114 424.0
79 TraesCS4B01G106800 chr1A 98.319 238 4 0 344 581 238144065 238144302 8.800000e-113 418.0
80 TraesCS4B01G106800 chr6B 98.319 238 4 0 344 581 596646245 596646482 8.800000e-113 418.0
81 TraesCS4B01G106800 chr6B 95.455 220 10 0 1 220 422619265 422619484 9.050000e-93 351.0
82 TraesCS4B01G106800 chr6B 95.000 220 11 0 1 220 204563065 204563284 4.210000e-91 346.0
83 TraesCS4B01G106800 chr6B 95.000 220 11 0 1 220 526787809 526787590 4.210000e-91 346.0
84 TraesCS4B01G106800 chr6B 95.000 220 11 0 1 220 543137013 543137232 4.210000e-91 346.0
85 TraesCS4B01G106800 chr2B 98.319 238 4 0 344 581 500750976 500751213 8.800000e-113 418.0
86 TraesCS4B01G106800 chr2B 95.890 219 9 0 1 219 749823357 749823139 7.000000e-94 355.0
87 TraesCS4B01G106800 chr7A 97.899 238 5 0 344 581 60318105 60318342 4.100000e-111 412.0
88 TraesCS4B01G106800 chr7A 91.367 139 12 0 5535 5673 438478793 438478931 2.090000e-44 191.0
89 TraesCS4B01G106800 chr7B 95.455 220 8 2 1 219 43526465 43526683 3.260000e-92 350.0
90 TraesCS4B01G106800 chr1B 95.434 219 10 0 1 219 680891044 680890826 3.260000e-92 350.0
91 TraesCS4B01G106800 chr1B 95.434 219 9 1 1 219 245972788 245973005 1.170000e-91 348.0
92 TraesCS4B01G106800 chr6D 94.872 39 2 0 4934 4972 351638057 351638095 1.710000e-05 62.1
93 TraesCS4B01G106800 chr3D 94.872 39 2 0 4934 4972 424297340 424297378 1.710000e-05 62.1
94 TraesCS4B01G106800 chr3B 100.000 33 0 0 4939 4971 200177882 200177914 1.710000e-05 62.1
95 TraesCS4B01G106800 chr2D 91.304 46 3 1 4925 4969 110841180 110841225 1.710000e-05 62.1
96 TraesCS4B01G106800 chr2A 95.000 40 0 2 4931 4969 710468443 710468405 1.710000e-05 62.1
97 TraesCS4B01G106800 chr2A 91.111 45 1 2 4925 4969 662346411 662346452 2.210000e-04 58.4
98 TraesCS4B01G106800 chr3A 97.143 35 1 0 4938 4972 469077591 469077557 6.150000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G106800 chr4B 116331853 116337532 5679 False 10490.000000 10490 100.000000 1 5680 1 chr4B.!!$F2 5679
1 TraesCS4B01G106800 chr4A 492887938 492892443 4505 False 1505.020000 6959 92.234000 700 5336 5 chr4A.!!$F1 4636
2 TraesCS4B01G106800 chr4D 82444156 82450703 6547 False 1141.528571 4686 91.790143 703 5680 7 chr4D.!!$F1 4977
3 TraesCS4B01G106800 chr5B 166830731 166835983 5252 True 328.857143 569 91.425000 1111 2896 7 chr5B.!!$R4 1785
4 TraesCS4B01G106800 chr5B 166811932 166813485 1553 True 222.666667 285 93.159000 3695 4634 6 chr5B.!!$R2 939
5 TraesCS4B01G106800 chr5A 177619671 177624908 5237 True 328.000000 569 91.913833 1355 2896 6 chr5A.!!$R4 1541
6 TraesCS4B01G106800 chr5A 177595932 177597494 1562 True 222.500000 285 92.694667 3695 4664 6 chr5A.!!$R2 969
7 TraesCS4B01G106800 chr5D 169938596 169940837 2241 False 437.500000 553 88.147000 1035 2532 4 chr5D.!!$F2 1497
8 TraesCS4B01G106800 chr5D 169971154 169972789 1635 False 226.333333 285 93.440000 3695 4634 6 chr5D.!!$F5 939
9 TraesCS4B01G106800 chr5D 169946830 169948225 1395 False 201.333333 220 95.550333 2531 2896 3 chr5D.!!$F3 365
10 TraesCS4B01G106800 chr1A 238141442 238144302 2860 False 421.000000 424 98.529000 344 581 2 chr1A.!!$F1 237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 855 0.106217 CCACCCTCTCCTCTCCTCTC 60.106 65.000 0.0 0.0 0.0 3.20 F
855 856 0.926293 CACCCTCTCCTCTCCTCTCT 59.074 60.000 0.0 0.0 0.0 3.10 F
856 857 1.133792 CACCCTCTCCTCTCCTCTCTC 60.134 61.905 0.0 0.0 0.0 3.20 F
857 858 1.275002 ACCCTCTCCTCTCCTCTCTCT 60.275 57.143 0.0 0.0 0.0 3.10 F
858 859 1.421646 CCCTCTCCTCTCCTCTCTCTC 59.578 61.905 0.0 0.0 0.0 3.20 F
3071 7998 1.009829 GCCGTGATAGTTTGGAGCAG 58.990 55.000 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 4057 0.325933 TGCAGCCTACAATCAGCACT 59.674 50.000 0.00 0.0 0.00 4.40 R
2663 6727 2.841442 AGTTGCACAAGTACTCCCTC 57.159 50.000 0.00 0.0 0.00 4.30 R
3032 7959 2.622436 CACTCGGAAACTGGGAGAATC 58.378 52.381 0.00 0.0 0.00 2.52 R
3071 7998 1.148048 GGGGATGCTCTCCAGAAGC 59.852 63.158 7.98 0.0 46.98 3.86 R
3116 8043 0.101759 CTGCCCCAAATGCTGAATCG 59.898 55.000 0.00 0.0 0.00 3.34 R
5233 11062 0.035056 AGAGCAAGGGAATGGGAACG 60.035 55.000 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.796424 AAGAAATTGTTCAGGCTTGTCAT 57.204 34.783 0.00 0.00 36.09 3.06
23 24 5.796424 AGAAATTGTTCAGGCTTGTCATT 57.204 34.783 0.00 0.00 36.09 2.57
24 25 6.165700 AGAAATTGTTCAGGCTTGTCATTT 57.834 33.333 0.00 0.00 36.09 2.32
25 26 5.987347 AGAAATTGTTCAGGCTTGTCATTTG 59.013 36.000 0.00 0.00 36.09 2.32
26 27 4.942761 ATTGTTCAGGCTTGTCATTTGT 57.057 36.364 0.00 0.00 0.00 2.83
27 28 4.734398 TTGTTCAGGCTTGTCATTTGTT 57.266 36.364 0.00 0.00 0.00 2.83
28 29 5.843673 TTGTTCAGGCTTGTCATTTGTTA 57.156 34.783 0.00 0.00 0.00 2.41
29 30 5.181690 TGTTCAGGCTTGTCATTTGTTAC 57.818 39.130 0.00 0.00 0.00 2.50
30 31 4.642437 TGTTCAGGCTTGTCATTTGTTACA 59.358 37.500 0.00 0.00 0.00 2.41
31 32 5.126222 TGTTCAGGCTTGTCATTTGTTACAA 59.874 36.000 0.00 0.00 34.57 2.41
32 33 5.843673 TCAGGCTTGTCATTTGTTACAAA 57.156 34.783 13.12 13.12 35.32 2.83
33 34 6.214191 TCAGGCTTGTCATTTGTTACAAAA 57.786 33.333 14.70 0.00 35.32 2.44
34 35 6.634805 TCAGGCTTGTCATTTGTTACAAAAA 58.365 32.000 14.70 3.81 35.32 1.94
35 36 6.756074 TCAGGCTTGTCATTTGTTACAAAAAG 59.244 34.615 14.70 13.60 35.32 2.27
36 37 6.018832 CAGGCTTGTCATTTGTTACAAAAAGG 60.019 38.462 14.70 7.71 35.32 3.11
37 38 6.045955 GGCTTGTCATTTGTTACAAAAAGGA 58.954 36.000 14.70 9.78 35.32 3.36
38 39 6.705825 GGCTTGTCATTTGTTACAAAAAGGAT 59.294 34.615 14.70 0.00 35.32 3.24
39 40 7.226523 GGCTTGTCATTTGTTACAAAAAGGATT 59.773 33.333 14.70 0.00 35.32 3.01
40 41 8.063630 GCTTGTCATTTGTTACAAAAAGGATTG 58.936 33.333 14.70 7.46 35.32 2.67
41 42 8.430801 TTGTCATTTGTTACAAAAAGGATTGG 57.569 30.769 14.70 0.00 32.86 3.16
42 43 6.989169 TGTCATTTGTTACAAAAAGGATTGGG 59.011 34.615 14.70 0.00 34.56 4.12
43 44 5.994668 TCATTTGTTACAAAAAGGATTGGGC 59.005 36.000 14.70 0.00 34.56 5.36
44 45 4.344359 TTGTTACAAAAAGGATTGGGCC 57.656 40.909 0.00 0.00 34.56 5.80
45 46 3.309296 TGTTACAAAAAGGATTGGGCCA 58.691 40.909 0.00 0.00 34.56 5.36
46 47 3.070302 TGTTACAAAAAGGATTGGGCCAC 59.930 43.478 5.23 0.00 34.56 5.01
47 48 1.055849 ACAAAAAGGATTGGGCCACC 58.944 50.000 5.23 5.11 34.56 4.61
48 49 1.351076 CAAAAAGGATTGGGCCACCT 58.649 50.000 5.23 8.05 37.76 4.00
49 50 1.699083 CAAAAAGGATTGGGCCACCTT 59.301 47.619 19.88 19.88 44.53 3.50
50 51 1.351076 AAAAGGATTGGGCCACCTTG 58.649 50.000 24.61 0.00 42.25 3.61
51 52 1.194121 AAAGGATTGGGCCACCTTGC 61.194 55.000 24.61 10.77 42.25 4.01
52 53 2.037847 GGATTGGGCCACCTTGCT 59.962 61.111 5.23 0.00 37.76 3.91
53 54 2.353610 GGATTGGGCCACCTTGCTG 61.354 63.158 5.23 0.00 37.76 4.41
54 55 2.999063 ATTGGGCCACCTTGCTGC 60.999 61.111 5.23 0.00 37.76 5.25
55 56 3.831727 ATTGGGCCACCTTGCTGCA 62.832 57.895 5.23 0.00 37.76 4.41
58 59 4.982701 GGCCACCTTGCTGCACCT 62.983 66.667 0.00 0.00 0.00 4.00
59 60 2.914097 GCCACCTTGCTGCACCTT 60.914 61.111 0.00 0.00 0.00 3.50
60 61 1.603455 GCCACCTTGCTGCACCTTA 60.603 57.895 0.00 0.00 0.00 2.69
61 62 0.967380 GCCACCTTGCTGCACCTTAT 60.967 55.000 0.00 0.00 0.00 1.73
62 63 1.549203 CCACCTTGCTGCACCTTATT 58.451 50.000 0.00 0.00 0.00 1.40
63 64 1.895131 CCACCTTGCTGCACCTTATTT 59.105 47.619 0.00 0.00 0.00 1.40
64 65 3.088532 CCACCTTGCTGCACCTTATTTA 58.911 45.455 0.00 0.00 0.00 1.40
65 66 3.119495 CCACCTTGCTGCACCTTATTTAC 60.119 47.826 0.00 0.00 0.00 2.01
66 67 3.758554 CACCTTGCTGCACCTTATTTACT 59.241 43.478 0.00 0.00 0.00 2.24
67 68 4.218417 CACCTTGCTGCACCTTATTTACTT 59.782 41.667 0.00 0.00 0.00 2.24
68 69 4.832823 ACCTTGCTGCACCTTATTTACTTT 59.167 37.500 0.00 0.00 0.00 2.66
69 70 5.048013 ACCTTGCTGCACCTTATTTACTTTC 60.048 40.000 0.00 0.00 0.00 2.62
70 71 5.048083 CCTTGCTGCACCTTATTTACTTTCA 60.048 40.000 0.00 0.00 0.00 2.69
71 72 6.350445 CCTTGCTGCACCTTATTTACTTTCAT 60.350 38.462 0.00 0.00 0.00 2.57
72 73 6.588719 TGCTGCACCTTATTTACTTTCATT 57.411 33.333 0.00 0.00 0.00 2.57
73 74 6.389091 TGCTGCACCTTATTTACTTTCATTG 58.611 36.000 0.00 0.00 0.00 2.82
74 75 5.289434 GCTGCACCTTATTTACTTTCATTGC 59.711 40.000 0.00 0.00 0.00 3.56
75 76 6.588719 TGCACCTTATTTACTTTCATTGCT 57.411 33.333 0.00 0.00 0.00 3.91
76 77 6.991938 TGCACCTTATTTACTTTCATTGCTT 58.008 32.000 0.00 0.00 0.00 3.91
77 78 6.867816 TGCACCTTATTTACTTTCATTGCTTG 59.132 34.615 0.00 0.00 0.00 4.01
78 79 6.868339 GCACCTTATTTACTTTCATTGCTTGT 59.132 34.615 0.00 0.00 0.00 3.16
79 80 7.384932 GCACCTTATTTACTTTCATTGCTTGTT 59.615 33.333 0.00 0.00 0.00 2.83
80 81 9.906660 CACCTTATTTACTTTCATTGCTTGTTA 57.093 29.630 0.00 0.00 0.00 2.41
81 82 9.908152 ACCTTATTTACTTTCATTGCTTGTTAC 57.092 29.630 0.00 0.00 0.00 2.50
125 126 9.959721 ATCACAAAACTATCTGTAACCTACAAT 57.040 29.630 0.00 0.00 38.38 2.71
126 127 9.787435 TCACAAAACTATCTGTAACCTACAATT 57.213 29.630 0.00 0.00 38.38 2.32
132 133 9.436957 AACTATCTGTAACCTACAATTTCAGTG 57.563 33.333 0.00 0.00 38.38 3.66
133 134 6.743575 ATCTGTAACCTACAATTTCAGTGC 57.256 37.500 0.00 0.00 38.38 4.40
134 135 5.865085 TCTGTAACCTACAATTTCAGTGCT 58.135 37.500 0.00 0.00 38.38 4.40
135 136 6.296026 TCTGTAACCTACAATTTCAGTGCTT 58.704 36.000 0.00 0.00 38.38 3.91
136 137 6.204688 TCTGTAACCTACAATTTCAGTGCTTG 59.795 38.462 0.00 0.00 38.38 4.01
137 138 3.923017 ACCTACAATTTCAGTGCTTGC 57.077 42.857 0.00 0.00 0.00 4.01
138 139 3.221771 ACCTACAATTTCAGTGCTTGCA 58.778 40.909 0.00 0.00 0.00 4.08
139 140 3.254166 ACCTACAATTTCAGTGCTTGCAG 59.746 43.478 0.00 0.00 0.00 4.41
140 141 3.503363 CCTACAATTTCAGTGCTTGCAGA 59.497 43.478 0.00 0.00 0.00 4.26
141 142 3.637998 ACAATTTCAGTGCTTGCAGAG 57.362 42.857 0.00 0.00 0.00 3.35
142 143 3.216800 ACAATTTCAGTGCTTGCAGAGA 58.783 40.909 0.00 0.00 0.00 3.10
143 144 3.633525 ACAATTTCAGTGCTTGCAGAGAA 59.366 39.130 0.00 0.75 0.00 2.87
144 145 4.280174 ACAATTTCAGTGCTTGCAGAGAAT 59.720 37.500 9.42 1.04 0.00 2.40
145 146 5.474532 ACAATTTCAGTGCTTGCAGAGAATA 59.525 36.000 9.42 3.86 0.00 1.75
146 147 5.557891 ATTTCAGTGCTTGCAGAGAATAC 57.442 39.130 9.42 0.00 0.00 1.89
147 148 3.969287 TCAGTGCTTGCAGAGAATACT 57.031 42.857 0.00 0.00 0.00 2.12
148 149 4.277515 TCAGTGCTTGCAGAGAATACTT 57.722 40.909 0.00 0.00 0.00 2.24
149 150 4.645535 TCAGTGCTTGCAGAGAATACTTT 58.354 39.130 0.00 0.00 0.00 2.66
150 151 5.793817 TCAGTGCTTGCAGAGAATACTTTA 58.206 37.500 0.00 0.00 0.00 1.85
151 152 5.639506 TCAGTGCTTGCAGAGAATACTTTAC 59.360 40.000 0.00 0.00 0.00 2.01
152 153 5.641209 CAGTGCTTGCAGAGAATACTTTACT 59.359 40.000 0.00 0.00 0.00 2.24
153 154 5.641209 AGTGCTTGCAGAGAATACTTTACTG 59.359 40.000 0.00 0.00 0.00 2.74
154 155 5.639506 GTGCTTGCAGAGAATACTTTACTGA 59.360 40.000 0.00 0.00 0.00 3.41
155 156 6.147821 GTGCTTGCAGAGAATACTTTACTGAA 59.852 38.462 0.00 0.00 0.00 3.02
156 157 6.710295 TGCTTGCAGAGAATACTTTACTGAAA 59.290 34.615 0.00 0.00 0.00 2.69
157 158 7.228507 TGCTTGCAGAGAATACTTTACTGAAAA 59.771 33.333 0.00 0.00 0.00 2.29
158 159 7.535599 GCTTGCAGAGAATACTTTACTGAAAAC 59.464 37.037 0.00 0.00 0.00 2.43
159 160 7.435068 TGCAGAGAATACTTTACTGAAAACC 57.565 36.000 0.00 0.00 0.00 3.27
160 161 6.147164 TGCAGAGAATACTTTACTGAAAACCG 59.853 38.462 0.00 0.00 0.00 4.44
161 162 6.534934 CAGAGAATACTTTACTGAAAACCGC 58.465 40.000 0.00 0.00 0.00 5.68
162 163 6.369065 CAGAGAATACTTTACTGAAAACCGCT 59.631 38.462 0.00 0.00 0.00 5.52
163 164 6.935208 AGAGAATACTTTACTGAAAACCGCTT 59.065 34.615 0.00 0.00 0.00 4.68
164 165 6.899114 AGAATACTTTACTGAAAACCGCTTG 58.101 36.000 0.00 0.00 0.00 4.01
165 166 6.485648 AGAATACTTTACTGAAAACCGCTTGT 59.514 34.615 0.00 0.00 0.00 3.16
166 167 4.547406 ACTTTACTGAAAACCGCTTGTC 57.453 40.909 0.00 0.00 0.00 3.18
167 168 3.942748 ACTTTACTGAAAACCGCTTGTCA 59.057 39.130 0.00 0.00 0.00 3.58
168 169 4.578928 ACTTTACTGAAAACCGCTTGTCAT 59.421 37.500 0.00 0.00 0.00 3.06
169 170 5.067283 ACTTTACTGAAAACCGCTTGTCATT 59.933 36.000 0.00 0.00 0.00 2.57
170 171 5.508200 TTACTGAAAACCGCTTGTCATTT 57.492 34.783 0.00 0.00 0.00 2.32
171 172 3.964909 ACTGAAAACCGCTTGTCATTTC 58.035 40.909 0.00 0.00 0.00 2.17
172 173 3.243401 ACTGAAAACCGCTTGTCATTTCC 60.243 43.478 0.00 0.00 30.80 3.13
173 174 2.955660 TGAAAACCGCTTGTCATTTCCT 59.044 40.909 0.00 0.00 30.80 3.36
174 175 3.383185 TGAAAACCGCTTGTCATTTCCTT 59.617 39.130 0.00 0.00 30.80 3.36
175 176 3.643159 AAACCGCTTGTCATTTCCTTC 57.357 42.857 0.00 0.00 0.00 3.46
176 177 2.568623 ACCGCTTGTCATTTCCTTCT 57.431 45.000 0.00 0.00 0.00 2.85
177 178 2.427506 ACCGCTTGTCATTTCCTTCTC 58.572 47.619 0.00 0.00 0.00 2.87
178 179 1.740025 CCGCTTGTCATTTCCTTCTCC 59.260 52.381 0.00 0.00 0.00 3.71
179 180 2.616510 CCGCTTGTCATTTCCTTCTCCT 60.617 50.000 0.00 0.00 0.00 3.69
180 181 2.675348 CGCTTGTCATTTCCTTCTCCTC 59.325 50.000 0.00 0.00 0.00 3.71
181 182 3.013219 GCTTGTCATTTCCTTCTCCTCC 58.987 50.000 0.00 0.00 0.00 4.30
182 183 3.308046 GCTTGTCATTTCCTTCTCCTCCT 60.308 47.826 0.00 0.00 0.00 3.69
183 184 4.809007 GCTTGTCATTTCCTTCTCCTCCTT 60.809 45.833 0.00 0.00 0.00 3.36
184 185 4.292186 TGTCATTTCCTTCTCCTCCTTG 57.708 45.455 0.00 0.00 0.00 3.61
185 186 3.652869 TGTCATTTCCTTCTCCTCCTTGT 59.347 43.478 0.00 0.00 0.00 3.16
186 187 4.104738 TGTCATTTCCTTCTCCTCCTTGTT 59.895 41.667 0.00 0.00 0.00 2.83
187 188 4.457257 GTCATTTCCTTCTCCTCCTTGTTG 59.543 45.833 0.00 0.00 0.00 3.33
188 189 3.508845 TTTCCTTCTCCTCCTTGTTGG 57.491 47.619 0.00 0.00 37.10 3.77
189 190 2.415983 TCCTTCTCCTCCTTGTTGGA 57.584 50.000 0.00 0.00 43.86 3.53
190 191 2.921221 TCCTTCTCCTCCTTGTTGGAT 58.079 47.619 0.00 0.00 45.16 3.41
191 192 3.260205 TCCTTCTCCTCCTTGTTGGATT 58.740 45.455 0.00 0.00 45.16 3.01
192 193 3.264450 TCCTTCTCCTCCTTGTTGGATTC 59.736 47.826 0.00 0.00 45.16 2.52
193 194 3.265791 CTTCTCCTCCTTGTTGGATTCG 58.734 50.000 0.00 0.00 45.16 3.34
194 195 2.536066 TCTCCTCCTTGTTGGATTCGA 58.464 47.619 0.00 0.00 45.16 3.71
195 196 2.233922 TCTCCTCCTTGTTGGATTCGAC 59.766 50.000 0.00 0.00 45.16 4.20
196 197 1.974957 TCCTCCTTGTTGGATTCGACA 59.025 47.619 0.00 0.00 45.16 4.35
197 198 2.076863 CCTCCTTGTTGGATTCGACAC 58.923 52.381 0.00 0.00 45.16 3.67
198 199 2.289694 CCTCCTTGTTGGATTCGACACT 60.290 50.000 0.00 0.00 45.16 3.55
199 200 2.996621 CTCCTTGTTGGATTCGACACTC 59.003 50.000 0.00 0.00 45.16 3.51
200 201 2.632996 TCCTTGTTGGATTCGACACTCT 59.367 45.455 0.00 0.00 40.56 3.24
201 202 3.071023 TCCTTGTTGGATTCGACACTCTT 59.929 43.478 0.00 0.00 40.56 2.85
202 203 4.282449 TCCTTGTTGGATTCGACACTCTTA 59.718 41.667 0.00 0.00 40.56 2.10
203 204 4.389077 CCTTGTTGGATTCGACACTCTTAC 59.611 45.833 0.00 0.00 37.04 2.34
204 205 4.866508 TGTTGGATTCGACACTCTTACT 57.133 40.909 0.00 0.00 32.62 2.24
205 206 5.209818 TGTTGGATTCGACACTCTTACTT 57.790 39.130 0.00 0.00 32.62 2.24
206 207 6.335471 TGTTGGATTCGACACTCTTACTTA 57.665 37.500 0.00 0.00 32.62 2.24
207 208 6.931838 TGTTGGATTCGACACTCTTACTTAT 58.068 36.000 0.00 0.00 32.62 1.73
208 209 7.033791 TGTTGGATTCGACACTCTTACTTATC 58.966 38.462 0.00 0.00 32.62 1.75
209 210 5.817988 TGGATTCGACACTCTTACTTATCG 58.182 41.667 0.00 0.00 0.00 2.92
210 211 5.587443 TGGATTCGACACTCTTACTTATCGA 59.413 40.000 0.00 0.00 36.85 3.59
214 215 5.877031 TCGACACTCTTACTTATCGAAAGG 58.123 41.667 10.65 0.00 35.80 3.11
215 216 5.645067 TCGACACTCTTACTTATCGAAAGGA 59.355 40.000 10.65 1.49 35.80 3.36
216 217 5.738225 CGACACTCTTACTTATCGAAAGGAC 59.262 44.000 10.65 0.00 0.00 3.85
217 218 6.403418 CGACACTCTTACTTATCGAAAGGACT 60.403 42.308 10.65 0.00 0.00 3.85
218 219 7.201591 CGACACTCTTACTTATCGAAAGGACTA 60.202 40.741 10.65 0.00 0.00 2.59
219 220 7.760437 ACACTCTTACTTATCGAAAGGACTAC 58.240 38.462 10.65 0.00 0.00 2.73
220 221 7.392673 ACACTCTTACTTATCGAAAGGACTACA 59.607 37.037 10.65 0.00 0.00 2.74
221 222 8.242053 CACTCTTACTTATCGAAAGGACTACAA 58.758 37.037 10.65 0.00 0.00 2.41
222 223 8.242739 ACTCTTACTTATCGAAAGGACTACAAC 58.757 37.037 10.65 0.00 0.00 3.32
223 224 7.542025 TCTTACTTATCGAAAGGACTACAACC 58.458 38.462 10.65 0.00 0.00 3.77
224 225 5.997384 ACTTATCGAAAGGACTACAACCT 57.003 39.130 10.65 0.00 39.69 3.50
225 226 5.721232 ACTTATCGAAAGGACTACAACCTG 58.279 41.667 10.65 0.00 37.85 4.00
226 227 5.245526 ACTTATCGAAAGGACTACAACCTGT 59.754 40.000 10.65 0.00 37.85 4.00
227 228 4.618920 ATCGAAAGGACTACAACCTGTT 57.381 40.909 0.00 0.00 37.85 3.16
228 229 3.724374 TCGAAAGGACTACAACCTGTTG 58.276 45.455 8.42 8.42 45.58 3.33
229 230 3.385433 TCGAAAGGACTACAACCTGTTGA 59.615 43.478 16.41 0.00 42.93 3.18
230 231 3.493503 CGAAAGGACTACAACCTGTTGAC 59.506 47.826 16.41 5.25 42.93 3.18
231 232 2.814280 AGGACTACAACCTGTTGACG 57.186 50.000 16.41 8.86 42.93 4.35
232 233 1.145803 GGACTACAACCTGTTGACGC 58.854 55.000 16.41 3.44 42.93 5.19
233 234 0.782384 GACTACAACCTGTTGACGCG 59.218 55.000 16.41 3.53 42.93 6.01
234 235 1.219522 ACTACAACCTGTTGACGCGC 61.220 55.000 16.41 0.00 42.93 6.86
235 236 0.944311 CTACAACCTGTTGACGCGCT 60.944 55.000 16.41 0.00 42.93 5.92
236 237 0.942410 TACAACCTGTTGACGCGCTC 60.942 55.000 16.41 3.58 42.93 5.03
237 238 1.956170 CAACCTGTTGACGCGCTCT 60.956 57.895 5.73 0.00 42.93 4.09
238 239 1.664965 AACCTGTTGACGCGCTCTC 60.665 57.895 5.73 0.00 0.00 3.20
239 240 2.049156 CCTGTTGACGCGCTCTCA 60.049 61.111 5.73 0.00 0.00 3.27
240 241 2.091112 CCTGTTGACGCGCTCTCAG 61.091 63.158 5.73 10.41 0.00 3.35
241 242 2.724708 CTGTTGACGCGCTCTCAGC 61.725 63.158 5.73 5.46 38.02 4.26
242 243 2.431601 GTTGACGCGCTCTCAGCT 60.432 61.111 5.73 0.00 39.60 4.24
243 244 2.431430 TTGACGCGCTCTCAGCTG 60.431 61.111 7.63 7.63 39.60 4.24
253 254 4.435436 CTCAGCTGCCGCCACGTA 62.435 66.667 9.47 0.00 36.60 3.57
254 255 3.723235 CTCAGCTGCCGCCACGTAT 62.723 63.158 9.47 0.00 36.60 3.06
255 256 3.264897 CAGCTGCCGCCACGTATC 61.265 66.667 0.00 0.00 36.60 2.24
256 257 4.873129 AGCTGCCGCCACGTATCG 62.873 66.667 0.00 0.00 36.60 2.92
266 267 2.494918 ACGTATCGTGCTCTGCCC 59.505 61.111 0.00 0.00 39.18 5.36
267 268 2.655364 CGTATCGTGCTCTGCCCG 60.655 66.667 0.00 0.00 0.00 6.13
268 269 2.494918 GTATCGTGCTCTGCCCGT 59.505 61.111 0.00 0.00 0.00 5.28
269 270 1.153628 GTATCGTGCTCTGCCCGTT 60.154 57.895 0.00 0.00 0.00 4.44
270 271 1.141019 TATCGTGCTCTGCCCGTTC 59.859 57.895 0.00 0.00 0.00 3.95
271 272 2.292794 TATCGTGCTCTGCCCGTTCC 62.293 60.000 0.00 0.00 0.00 3.62
273 274 4.021925 GTGCTCTGCCCGTTCCCT 62.022 66.667 0.00 0.00 0.00 4.20
274 275 3.706373 TGCTCTGCCCGTTCCCTC 61.706 66.667 0.00 0.00 0.00 4.30
275 276 4.475135 GCTCTGCCCGTTCCCTCC 62.475 72.222 0.00 0.00 0.00 4.30
276 277 4.148825 CTCTGCCCGTTCCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
277 278 4.689549 TCTGCCCGTTCCCTCCGA 62.690 66.667 0.00 0.00 0.00 4.55
278 279 3.702048 CTGCCCGTTCCCTCCGAA 61.702 66.667 0.00 0.00 0.00 4.30
279 280 3.006728 TGCCCGTTCCCTCCGAAT 61.007 61.111 0.00 0.00 31.67 3.34
280 281 2.271173 GCCCGTTCCCTCCGAATT 59.729 61.111 0.00 0.00 31.67 2.17
281 282 1.378119 GCCCGTTCCCTCCGAATTT 60.378 57.895 0.00 0.00 31.67 1.82
282 283 0.963856 GCCCGTTCCCTCCGAATTTT 60.964 55.000 0.00 0.00 31.67 1.82
283 284 1.679640 GCCCGTTCCCTCCGAATTTTA 60.680 52.381 0.00 0.00 31.67 1.52
284 285 2.927028 CCCGTTCCCTCCGAATTTTAT 58.073 47.619 0.00 0.00 31.67 1.40
285 286 3.284617 CCCGTTCCCTCCGAATTTTATT 58.715 45.455 0.00 0.00 31.67 1.40
286 287 3.697542 CCCGTTCCCTCCGAATTTTATTT 59.302 43.478 0.00 0.00 31.67 1.40
287 288 4.158949 CCCGTTCCCTCCGAATTTTATTTT 59.841 41.667 0.00 0.00 31.67 1.82
288 289 5.357596 CCCGTTCCCTCCGAATTTTATTTTA 59.642 40.000 0.00 0.00 31.67 1.52
289 290 6.040054 CCCGTTCCCTCCGAATTTTATTTTAT 59.960 38.462 0.00 0.00 31.67 1.40
290 291 7.417003 CCCGTTCCCTCCGAATTTTATTTTATT 60.417 37.037 0.00 0.00 31.67 1.40
291 292 7.977293 CCGTTCCCTCCGAATTTTATTTTATTT 59.023 33.333 0.00 0.00 31.67 1.40
292 293 9.361315 CGTTCCCTCCGAATTTTATTTTATTTT 57.639 29.630 0.00 0.00 31.67 1.82
313 314 5.881637 TTTCTTTTTCTGTATGCGTTTGC 57.118 34.783 0.00 0.00 43.20 3.68
326 327 2.923643 GCGTTTGCGGTTTTTAGATGA 58.076 42.857 0.00 0.00 38.78 2.92
327 328 3.498082 GCGTTTGCGGTTTTTAGATGAT 58.502 40.909 0.00 0.00 38.78 2.45
328 329 3.917985 GCGTTTGCGGTTTTTAGATGATT 59.082 39.130 0.00 0.00 38.78 2.57
329 330 4.384547 GCGTTTGCGGTTTTTAGATGATTT 59.615 37.500 0.00 0.00 38.78 2.17
330 331 5.107645 GCGTTTGCGGTTTTTAGATGATTTT 60.108 36.000 0.00 0.00 38.78 1.82
331 332 6.563196 GCGTTTGCGGTTTTTAGATGATTTTT 60.563 34.615 0.00 0.00 38.78 1.94
332 333 7.358517 GCGTTTGCGGTTTTTAGATGATTTTTA 60.359 33.333 0.00 0.00 38.78 1.52
333 334 8.643752 CGTTTGCGGTTTTTAGATGATTTTTAT 58.356 29.630 0.00 0.00 0.00 1.40
334 335 9.952341 GTTTGCGGTTTTTAGATGATTTTTATC 57.048 29.630 0.00 0.00 0.00 1.75
335 336 9.921637 TTTGCGGTTTTTAGATGATTTTTATCT 57.078 25.926 0.00 0.00 38.40 1.98
336 337 9.921637 TTGCGGTTTTTAGATGATTTTTATCTT 57.078 25.926 0.00 0.00 36.38 2.40
337 338 9.921637 TGCGGTTTTTAGATGATTTTTATCTTT 57.078 25.926 0.00 0.00 36.38 2.52
530 531 2.100749 GGCCAACAACTTAACTTGCAGT 59.899 45.455 0.00 0.00 0.00 4.40
577 578 1.001393 GAGGGGTTTTGCGGATCCA 60.001 57.895 13.41 0.00 0.00 3.41
581 582 1.277842 GGGGTTTTGCGGATCCATTTT 59.722 47.619 13.41 0.00 0.00 1.82
583 584 3.055747 GGGGTTTTGCGGATCCATTTTTA 60.056 43.478 13.41 0.00 0.00 1.52
585 586 4.808895 GGGTTTTGCGGATCCATTTTTATC 59.191 41.667 13.41 0.00 0.00 1.75
586 587 4.502645 GGTTTTGCGGATCCATTTTTATCG 59.497 41.667 13.41 0.00 0.00 2.92
587 588 5.336744 GTTTTGCGGATCCATTTTTATCGA 58.663 37.500 13.41 0.00 0.00 3.59
588 589 5.766150 TTTGCGGATCCATTTTTATCGAT 57.234 34.783 13.41 2.16 0.00 3.59
589 590 5.766150 TTGCGGATCCATTTTTATCGATT 57.234 34.783 13.41 0.00 0.00 3.34
641 642 4.351131 AAAACGCGTTCTTTTGTCTTCT 57.649 36.364 26.77 1.13 0.00 2.85
642 643 3.587403 AACGCGTTCTTTTGTCTTCTC 57.413 42.857 20.79 0.00 0.00 2.87
644 645 1.521423 CGCGTTCTTTTGTCTTCTCGT 59.479 47.619 0.00 0.00 0.00 4.18
645 646 2.656632 CGCGTTCTTTTGTCTTCTCGTG 60.657 50.000 0.00 0.00 0.00 4.35
646 647 2.538449 GCGTTCTTTTGTCTTCTCGTGA 59.462 45.455 0.00 0.00 0.00 4.35
647 648 3.362110 GCGTTCTTTTGTCTTCTCGTGAG 60.362 47.826 0.00 0.00 0.00 3.51
648 649 4.042398 CGTTCTTTTGTCTTCTCGTGAGA 58.958 43.478 0.00 0.00 39.12 3.27
666 667 6.107901 GTGAGAGGCACATATCTATTTCCT 57.892 41.667 0.00 0.00 46.91 3.36
668 669 5.047731 TGAGAGGCACATATCTATTTCCTCG 60.048 44.000 0.00 0.00 42.41 4.63
670 671 3.904339 AGGCACATATCTATTTCCTCGGT 59.096 43.478 0.00 0.00 0.00 4.69
671 672 4.348168 AGGCACATATCTATTTCCTCGGTT 59.652 41.667 0.00 0.00 0.00 4.44
672 673 5.063880 GGCACATATCTATTTCCTCGGTTT 58.936 41.667 0.00 0.00 0.00 3.27
674 675 6.039382 GGCACATATCTATTTCCTCGGTTTTT 59.961 38.462 0.00 0.00 0.00 1.94
675 676 6.912591 GCACATATCTATTTCCTCGGTTTTTG 59.087 38.462 0.00 0.00 0.00 2.44
676 677 7.417612 CACATATCTATTTCCTCGGTTTTTGG 58.582 38.462 0.00 0.00 0.00 3.28
677 678 7.282224 CACATATCTATTTCCTCGGTTTTTGGA 59.718 37.037 0.00 0.00 0.00 3.53
679 680 8.850156 CATATCTATTTCCTCGGTTTTTGGATT 58.150 33.333 0.00 0.00 0.00 3.01
680 681 7.718334 ATCTATTTCCTCGGTTTTTGGATTT 57.282 32.000 0.00 0.00 0.00 2.17
681 682 7.533289 TCTATTTCCTCGGTTTTTGGATTTT 57.467 32.000 0.00 0.00 0.00 1.82
682 683 7.958088 TCTATTTCCTCGGTTTTTGGATTTTT 58.042 30.769 0.00 0.00 0.00 1.94
789 790 1.905354 GTTGGGCCAGCTTTGCTCT 60.905 57.895 13.73 0.00 36.40 4.09
797 798 1.409802 CCAGCTTTGCTCTGATGGGAT 60.410 52.381 0.00 0.00 36.40 3.85
799 800 0.384669 GCTTTGCTCTGATGGGATGC 59.615 55.000 0.00 0.00 0.00 3.91
800 801 1.758936 CTTTGCTCTGATGGGATGCA 58.241 50.000 0.00 0.00 0.00 3.96
801 802 1.404391 CTTTGCTCTGATGGGATGCAC 59.596 52.381 0.00 0.00 33.13 4.57
802 803 0.394762 TTGCTCTGATGGGATGCACC 60.395 55.000 0.00 0.00 33.13 5.01
813 814 1.238439 GGATGCACCCATACAATCCG 58.762 55.000 0.00 0.00 32.21 4.18
814 815 1.476833 GGATGCACCCATACAATCCGT 60.477 52.381 0.00 0.00 32.21 4.69
815 816 1.603802 GATGCACCCATACAATCCGTG 59.396 52.381 0.00 0.00 0.00 4.94
816 817 0.326595 TGCACCCATACAATCCGTGT 59.673 50.000 0.00 0.00 44.82 4.49
817 818 0.732571 GCACCCATACAATCCGTGTG 59.267 55.000 0.00 0.00 41.89 3.82
818 819 0.732571 CACCCATACAATCCGTGTGC 59.267 55.000 0.00 0.00 41.89 4.57
819 820 0.393808 ACCCATACAATCCGTGTGCC 60.394 55.000 0.00 0.00 41.89 5.01
820 821 1.101049 CCCATACAATCCGTGTGCCC 61.101 60.000 0.00 0.00 41.89 5.36
821 822 1.101049 CCATACAATCCGTGTGCCCC 61.101 60.000 0.00 0.00 41.89 5.80
822 823 1.101049 CATACAATCCGTGTGCCCCC 61.101 60.000 0.00 0.00 41.89 5.40
847 848 2.689034 CACCCCCACCCTCTCCTC 60.689 72.222 0.00 0.00 0.00 3.71
849 850 2.041405 CCCCCACCCTCTCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
850 851 2.041405 CCCCACCCTCTCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
851 852 2.641746 CCCCACCCTCTCCTCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
852 853 1.075600 CCCACCCTCTCCTCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
853 854 1.589399 CCCACCCTCTCCTCTCCTCT 61.589 65.000 0.00 0.00 0.00 3.69
854 855 0.106217 CCACCCTCTCCTCTCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
855 856 0.926293 CACCCTCTCCTCTCCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
856 857 1.133792 CACCCTCTCCTCTCCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
857 858 1.275002 ACCCTCTCCTCTCCTCTCTCT 60.275 57.143 0.00 0.00 0.00 3.10
858 859 1.421646 CCCTCTCCTCTCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
859 860 2.412591 CCTCTCCTCTCCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
860 861 2.370189 CCTCTCCTCTCCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
861 862 3.312890 CTCTCCTCTCCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
862 863 3.713764 CTCTCCTCTCCTCTCTCTCTCTT 59.286 52.174 0.00 0.00 0.00 2.85
863 864 4.111577 TCTCCTCTCCTCTCTCTCTCTTT 58.888 47.826 0.00 0.00 0.00 2.52
864 865 4.540099 TCTCCTCTCCTCTCTCTCTCTTTT 59.460 45.833 0.00 0.00 0.00 2.27
865 866 5.729229 TCTCCTCTCCTCTCTCTCTCTTTTA 59.271 44.000 0.00 0.00 0.00 1.52
866 867 6.389869 TCTCCTCTCCTCTCTCTCTCTTTTAT 59.610 42.308 0.00 0.00 0.00 1.40
867 868 6.980577 TCCTCTCCTCTCTCTCTCTTTTATT 58.019 40.000 0.00 0.00 0.00 1.40
868 869 8.108378 TCCTCTCCTCTCTCTCTCTTTTATTA 57.892 38.462 0.00 0.00 0.00 0.98
2090 3956 1.644786 GCTGTTCCACCGGTATGTGC 61.645 60.000 6.87 3.57 34.85 4.57
2155 4029 8.272545 TGATTCCAGATGTTTCTCAATAACTG 57.727 34.615 0.00 0.00 0.00 3.16
2240 4192 6.569179 TGTTTCTCAATAACTTTACTGGCC 57.431 37.500 0.00 0.00 0.00 5.36
2663 6727 5.056480 TGTGGATTTAGCAATGATACTCCG 58.944 41.667 3.00 0.00 0.00 4.63
3032 7959 3.692257 ACTCCACTTCAGATGGACTTG 57.308 47.619 0.00 0.00 41.47 3.16
3071 7998 1.009829 GCCGTGATAGTTTGGAGCAG 58.990 55.000 0.00 0.00 0.00 4.24
3116 8043 5.689383 TGTTTGAGAACAATAGAGTTGCC 57.311 39.130 0.00 0.00 42.54 4.52
3257 8184 6.228616 AGGGAAACTGAAGCTAGATCTAAC 57.771 41.667 3.57 0.00 0.00 2.34
3260 8187 6.704050 GGGAAACTGAAGCTAGATCTAACATC 59.296 42.308 3.57 2.78 0.00 3.06
3386 8313 1.806542 CTTGCCACACAGTCATACACC 59.193 52.381 0.00 0.00 0.00 4.16
4069 9249 0.105039 CGGTCCTATTGGGTCTCTGC 59.895 60.000 0.00 0.00 36.25 4.26
4151 9416 5.070981 TCTCCATGATCTTACATCAAGGGAC 59.929 44.000 6.12 0.00 37.46 4.46
4350 9854 3.530265 TGGCATTGGAGCAATTTGATC 57.470 42.857 6.10 6.10 31.05 2.92
4490 10192 2.027625 GGTCGAGGACAAAGCACCG 61.028 63.158 0.00 0.00 33.68 4.94
4762 10566 4.156008 CAGTGCTGTTTTTATCCCTACACC 59.844 45.833 0.00 0.00 0.00 4.16
4768 10572 4.264172 TGTTTTTATCCCTACACCCATGCT 60.264 41.667 0.00 0.00 0.00 3.79
4785 10589 3.822594 TGCTGTTGTTACATAAAGCGG 57.177 42.857 8.97 0.00 32.86 5.52
4786 10590 3.142951 TGCTGTTGTTACATAAAGCGGT 58.857 40.909 8.97 0.00 32.86 5.68
4787 10591 3.566322 TGCTGTTGTTACATAAAGCGGTT 59.434 39.130 0.00 0.00 32.86 4.44
4810 10614 7.709182 GGTTTATATTTGGTATGGTTTCCTTGC 59.291 37.037 0.00 0.00 0.00 4.01
4830 10634 2.554893 GCCTACTCGAGGGACTTATCTG 59.445 54.545 18.41 0.00 46.81 2.90
4831 10635 3.748027 GCCTACTCGAGGGACTTATCTGA 60.748 52.174 18.41 0.00 46.81 3.27
4934 10749 8.844244 AGATCATTTTGGCAGATCTTACAATAC 58.156 33.333 10.28 0.00 44.40 1.89
4942 10761 8.023021 TGGCAGATCTTACAATACTGAATACT 57.977 34.615 0.00 0.00 0.00 2.12
4944 10763 8.983724 GGCAGATCTTACAATACTGAATACTTC 58.016 37.037 0.00 0.00 0.00 3.01
4945 10764 8.983724 GCAGATCTTACAATACTGAATACTTCC 58.016 37.037 0.00 0.00 0.00 3.46
4949 10768 7.713750 TCTTACAATACTGAATACTTCCTCCG 58.286 38.462 0.00 0.00 0.00 4.63
4951 10770 5.903810 ACAATACTGAATACTTCCTCCGTC 58.096 41.667 0.00 0.00 0.00 4.79
4953 10772 2.108970 ACTGAATACTTCCTCCGTCCC 58.891 52.381 0.00 0.00 0.00 4.46
4954 10773 2.108168 CTGAATACTTCCTCCGTCCCA 58.892 52.381 0.00 0.00 0.00 4.37
4955 10774 2.500098 CTGAATACTTCCTCCGTCCCAA 59.500 50.000 0.00 0.00 0.00 4.12
4956 10775 2.907696 TGAATACTTCCTCCGTCCCAAA 59.092 45.455 0.00 0.00 0.00 3.28
4957 10776 3.328343 TGAATACTTCCTCCGTCCCAAAA 59.672 43.478 0.00 0.00 0.00 2.44
4958 10777 4.018779 TGAATACTTCCTCCGTCCCAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
4959 10778 2.971901 ACTTCCTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4960 10779 2.791655 ACTTCCTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
4961 10780 2.375509 ACTTCCTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
4962 10781 3.181433 ACTTCCTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
4963 10782 2.790433 TCCTCCGTCCCAAAATTCTTG 58.210 47.619 0.00 0.00 0.00 3.02
4965 10784 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4967 10786 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4968 10787 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4970 10789 6.713276 TCCGTCCCAAAATTCTTGTCTTATA 58.287 36.000 0.00 0.00 0.00 0.98
4971 10790 6.596497 TCCGTCCCAAAATTCTTGTCTTATAC 59.404 38.462 0.00 0.00 0.00 1.47
4972 10791 6.456449 CCGTCCCAAAATTCTTGTCTTATACG 60.456 42.308 0.00 0.00 0.00 3.06
4973 10792 6.456449 CGTCCCAAAATTCTTGTCTTATACGG 60.456 42.308 0.00 0.00 0.00 4.02
4974 10793 6.596497 GTCCCAAAATTCTTGTCTTATACGGA 59.404 38.462 0.00 0.00 0.00 4.69
4978 10797 9.104965 CCAAAATTCTTGTCTTATACGGATGTA 57.895 33.333 0.00 0.00 34.45 2.29
4983 10802 9.698309 ATTCTTGTCTTATACGGATGTATCAAG 57.302 33.333 0.00 1.05 41.50 3.02
4984 10803 8.234136 TCTTGTCTTATACGGATGTATCAAGT 57.766 34.615 13.19 0.00 41.50 3.16
4985 10804 8.350722 TCTTGTCTTATACGGATGTATCAAGTC 58.649 37.037 13.19 0.00 41.50 3.01
4986 10805 7.576861 TGTCTTATACGGATGTATCAAGTCA 57.423 36.000 0.00 0.00 41.50 3.41
4987 10806 8.178313 TGTCTTATACGGATGTATCAAGTCAT 57.822 34.615 0.00 0.00 41.50 3.06
4988 10807 8.082242 TGTCTTATACGGATGTATCAAGTCATG 58.918 37.037 0.00 0.00 41.50 3.07
4989 10808 8.082852 GTCTTATACGGATGTATCAAGTCATGT 58.917 37.037 0.00 0.00 41.50 3.21
4990 10809 8.638873 TCTTATACGGATGTATCAAGTCATGTT 58.361 33.333 0.00 0.00 41.50 2.71
4991 10810 9.261180 CTTATACGGATGTATCAAGTCATGTTT 57.739 33.333 0.00 0.00 41.50 2.83
4992 10811 9.607988 TTATACGGATGTATCAAGTCATGTTTT 57.392 29.630 0.00 0.00 41.50 2.43
4993 10812 6.817765 ACGGATGTATCAAGTCATGTTTTT 57.182 33.333 0.00 0.00 0.00 1.94
4994 10813 6.611381 ACGGATGTATCAAGTCATGTTTTTG 58.389 36.000 0.00 0.00 0.00 2.44
4995 10814 6.206634 ACGGATGTATCAAGTCATGTTTTTGT 59.793 34.615 0.00 0.00 0.00 2.83
4996 10815 7.389330 ACGGATGTATCAAGTCATGTTTTTGTA 59.611 33.333 0.00 0.00 0.00 2.41
4997 10816 8.397906 CGGATGTATCAAGTCATGTTTTTGTAT 58.602 33.333 0.00 0.00 0.00 2.29
5107 10926 0.755327 ACCTTGCCTTGGGTTGTGTC 60.755 55.000 0.00 0.00 30.80 3.67
5108 10927 1.654220 CTTGCCTTGGGTTGTGTCG 59.346 57.895 0.00 0.00 0.00 4.35
5109 10928 2.406452 CTTGCCTTGGGTTGTGTCGC 62.406 60.000 0.00 0.00 0.00 5.19
5110 10929 2.594592 GCCTTGGGTTGTGTCGCT 60.595 61.111 0.00 0.00 0.00 4.93
5115 10944 0.457851 TTGGGTTGTGTCGCTTTTGG 59.542 50.000 0.00 0.00 0.00 3.28
5118 10947 0.179124 GGTTGTGTCGCTTTTGGCAA 60.179 50.000 0.00 0.00 41.91 4.52
5119 10948 0.920664 GTTGTGTCGCTTTTGGCAAC 59.079 50.000 0.00 0.00 41.91 4.17
5124 10953 0.594796 GTCGCTTTTGGCAACCTGTG 60.595 55.000 0.00 0.00 41.91 3.66
5143 10972 3.288308 CTCTCTCGTTGCGGCCTGT 62.288 63.158 0.00 0.00 0.00 4.00
5152 10981 4.687215 GCGGCCTGTGTCAGCTGA 62.687 66.667 13.74 13.74 0.00 4.26
5157 10986 1.908340 GCCTGTGTCAGCTGATCCCT 61.908 60.000 21.47 0.00 0.00 4.20
5171 11000 2.295885 GATCCCTGCCACTGATTCAAG 58.704 52.381 0.00 0.00 0.00 3.02
5174 11003 0.609957 CCTGCCACTGATTCAAGCCA 60.610 55.000 0.00 0.00 0.00 4.75
5175 11004 0.809385 CTGCCACTGATTCAAGCCAG 59.191 55.000 0.00 0.00 36.53 4.85
5189 11018 3.252284 CCAGGTGGAGTGGTGGCT 61.252 66.667 0.00 0.00 37.39 4.75
5190 11019 2.033141 CAGGTGGAGTGGTGGCTG 59.967 66.667 0.00 0.00 0.00 4.85
5191 11020 3.252284 AGGTGGAGTGGTGGCTGG 61.252 66.667 0.00 0.00 0.00 4.85
5192 11021 3.249189 GGTGGAGTGGTGGCTGGA 61.249 66.667 0.00 0.00 0.00 3.86
5193 11022 2.829384 GGTGGAGTGGTGGCTGGAA 61.829 63.158 0.00 0.00 0.00 3.53
5194 11023 1.380302 GTGGAGTGGTGGCTGGAAT 59.620 57.895 0.00 0.00 0.00 3.01
5195 11024 0.251341 GTGGAGTGGTGGCTGGAATT 60.251 55.000 0.00 0.00 0.00 2.17
5209 11038 0.389817 GGAATTTGGAAAGCCGTGCC 60.390 55.000 0.00 0.00 36.79 5.01
5233 11062 3.188460 TGATTCTAAAGCACAGCGGAAAC 59.812 43.478 0.00 0.00 0.00 2.78
5278 11107 1.665735 CCGTTTGGATGCTTTGGAACG 60.666 52.381 0.00 0.00 39.43 3.95
5328 11269 2.639286 GTTGTTGCCCGTGAGCAG 59.361 61.111 0.00 0.00 45.13 4.24
5341 11282 2.606308 CGTGAGCAGCAAAAGCAAGATT 60.606 45.455 0.00 0.00 0.00 2.40
5367 11308 3.006967 GGTGCGTAGGGATTGTCTGATAT 59.993 47.826 0.00 0.00 0.00 1.63
5369 11310 5.057149 GTGCGTAGGGATTGTCTGATATTT 58.943 41.667 0.00 0.00 0.00 1.40
5370 11311 5.050091 GTGCGTAGGGATTGTCTGATATTTG 60.050 44.000 0.00 0.00 0.00 2.32
5371 11312 4.452455 GCGTAGGGATTGTCTGATATTTGG 59.548 45.833 0.00 0.00 0.00 3.28
5372 11313 5.741964 GCGTAGGGATTGTCTGATATTTGGA 60.742 44.000 0.00 0.00 0.00 3.53
5373 11314 5.928839 CGTAGGGATTGTCTGATATTTGGAG 59.071 44.000 0.00 0.00 0.00 3.86
5374 11315 6.239317 CGTAGGGATTGTCTGATATTTGGAGA 60.239 42.308 0.00 0.00 0.00 3.71
5375 11316 6.581388 AGGGATTGTCTGATATTTGGAGAA 57.419 37.500 0.00 0.00 0.00 2.87
5376 11317 6.599445 AGGGATTGTCTGATATTTGGAGAAG 58.401 40.000 0.00 0.00 0.00 2.85
5377 11318 5.767168 GGGATTGTCTGATATTTGGAGAAGG 59.233 44.000 0.00 0.00 0.00 3.46
5378 11319 5.767168 GGATTGTCTGATATTTGGAGAAGGG 59.233 44.000 0.00 0.00 0.00 3.95
5392 12106 3.339093 AGGGGCCCCTACAAGCAC 61.339 66.667 43.85 11.75 46.14 4.40
5399 12113 1.538419 GCCCCTACAAGCACGTCTATC 60.538 57.143 0.00 0.00 0.00 2.08
5400 12114 1.068741 CCCCTACAAGCACGTCTATCC 59.931 57.143 0.00 0.00 0.00 2.59
5401 12115 2.032620 CCCTACAAGCACGTCTATCCT 58.967 52.381 0.00 0.00 0.00 3.24
5402 12116 2.034812 CCCTACAAGCACGTCTATCCTC 59.965 54.545 0.00 0.00 0.00 3.71
5403 12117 2.034812 CCTACAAGCACGTCTATCCTCC 59.965 54.545 0.00 0.00 0.00 4.30
5408 12122 2.124403 ACGTCTATCCTCCGCCGT 60.124 61.111 0.00 0.00 0.00 5.68
5415 12129 0.974010 TATCCTCCGCCGTCCAAACT 60.974 55.000 0.00 0.00 0.00 2.66
5419 12133 3.423154 CCGCCGTCCAAACTCTGC 61.423 66.667 0.00 0.00 0.00 4.26
5423 12137 1.856265 GCCGTCCAAACTCTGCCTTG 61.856 60.000 0.00 0.00 0.00 3.61
5430 12144 3.587061 TCCAAACTCTGCCTTGGAGAATA 59.413 43.478 0.00 0.00 44.87 1.75
5442 12156 5.383476 CCTTGGAGAATAAGCCATGAGAAT 58.617 41.667 0.00 0.00 33.46 2.40
5461 12175 7.136119 TGAGAATAATTTAATTTTAGGCGGCG 58.864 34.615 0.51 0.51 0.00 6.46
5493 12207 0.043334 AGACCACCCTAGGCATGTCT 59.957 55.000 15.64 15.64 0.00 3.41
5521 12235 9.979578 ACTTTATCAGTTCAACAAATTGCATTA 57.020 25.926 0.00 0.00 35.63 1.90
5527 12241 8.409371 TCAGTTCAACAAATTGCATTAAGTACA 58.591 29.630 0.00 0.00 35.63 2.90
5530 12244 7.043961 TCAACAAATTGCATTAAGTACACCA 57.956 32.000 0.00 0.00 35.63 4.17
5536 12250 2.752354 TGCATTAAGTACACCATGGCAC 59.248 45.455 13.04 7.67 0.00 5.01
5593 12307 4.100084 CATCCTCTGTGCCCGCCA 62.100 66.667 0.00 0.00 0.00 5.69
5630 12344 3.055094 TGGTCCTTGCTCCAGAGATTAAC 60.055 47.826 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.796424 ATGACAAGCCTGAACAATTTCTT 57.204 34.783 0.00 0.00 32.36 2.52
1 2 5.796424 AATGACAAGCCTGAACAATTTCT 57.204 34.783 0.00 0.00 32.36 2.52
2 3 5.754890 ACAAATGACAAGCCTGAACAATTTC 59.245 36.000 0.00 0.00 0.00 2.17
3 4 5.673514 ACAAATGACAAGCCTGAACAATTT 58.326 33.333 0.00 0.00 0.00 1.82
4 5 5.280654 ACAAATGACAAGCCTGAACAATT 57.719 34.783 0.00 0.00 0.00 2.32
5 6 4.942761 ACAAATGACAAGCCTGAACAAT 57.057 36.364 0.00 0.00 0.00 2.71
6 7 4.734398 AACAAATGACAAGCCTGAACAA 57.266 36.364 0.00 0.00 0.00 2.83
7 8 4.642437 TGTAACAAATGACAAGCCTGAACA 59.358 37.500 0.00 0.00 0.00 3.18
8 9 5.181690 TGTAACAAATGACAAGCCTGAAC 57.818 39.130 0.00 0.00 0.00 3.18
9 10 5.843673 TTGTAACAAATGACAAGCCTGAA 57.156 34.783 0.00 0.00 31.98 3.02
11 12 6.018832 CCTTTTTGTAACAAATGACAAGCCTG 60.019 38.462 0.00 0.00 36.92 4.85
12 13 6.048509 CCTTTTTGTAACAAATGACAAGCCT 58.951 36.000 0.00 0.00 36.92 4.58
13 14 6.045955 TCCTTTTTGTAACAAATGACAAGCC 58.954 36.000 0.00 0.00 36.92 4.35
14 15 7.713764 ATCCTTTTTGTAACAAATGACAAGC 57.286 32.000 0.00 0.00 36.92 4.01
15 16 8.550376 CCAATCCTTTTTGTAACAAATGACAAG 58.450 33.333 0.00 0.00 36.92 3.16
16 17 7.497249 CCCAATCCTTTTTGTAACAAATGACAA 59.503 33.333 0.00 0.00 33.81 3.18
17 18 6.989169 CCCAATCCTTTTTGTAACAAATGACA 59.011 34.615 0.00 0.00 0.00 3.58
18 19 6.073276 GCCCAATCCTTTTTGTAACAAATGAC 60.073 38.462 0.00 0.00 0.00 3.06
19 20 5.994668 GCCCAATCCTTTTTGTAACAAATGA 59.005 36.000 0.00 0.00 0.00 2.57
20 21 5.181056 GGCCCAATCCTTTTTGTAACAAATG 59.819 40.000 0.00 0.00 0.00 2.32
21 22 5.163152 TGGCCCAATCCTTTTTGTAACAAAT 60.163 36.000 0.00 0.00 0.00 2.32
22 23 4.164221 TGGCCCAATCCTTTTTGTAACAAA 59.836 37.500 0.00 0.00 0.00 2.83
23 24 3.711704 TGGCCCAATCCTTTTTGTAACAA 59.288 39.130 0.00 0.00 0.00 2.83
24 25 3.070302 GTGGCCCAATCCTTTTTGTAACA 59.930 43.478 0.00 0.00 0.00 2.41
25 26 3.556213 GGTGGCCCAATCCTTTTTGTAAC 60.556 47.826 0.00 0.00 0.00 2.50
26 27 2.635427 GGTGGCCCAATCCTTTTTGTAA 59.365 45.455 0.00 0.00 0.00 2.41
27 28 2.158234 AGGTGGCCCAATCCTTTTTGTA 60.158 45.455 0.00 0.00 0.00 2.41
28 29 1.055849 GGTGGCCCAATCCTTTTTGT 58.944 50.000 0.00 0.00 0.00 2.83
29 30 1.351076 AGGTGGCCCAATCCTTTTTG 58.649 50.000 0.00 0.00 0.00 2.44
30 31 1.699083 CAAGGTGGCCCAATCCTTTTT 59.301 47.619 13.49 0.00 39.22 1.94
31 32 1.351076 CAAGGTGGCCCAATCCTTTT 58.649 50.000 13.49 0.00 39.22 2.27
32 33 1.194121 GCAAGGTGGCCCAATCCTTT 61.194 55.000 13.49 0.00 39.22 3.11
33 34 1.610379 GCAAGGTGGCCCAATCCTT 60.610 57.895 0.00 6.54 41.53 3.36
34 35 2.037847 GCAAGGTGGCCCAATCCT 59.962 61.111 0.00 0.00 0.00 3.24
35 36 2.037847 AGCAAGGTGGCCCAATCC 59.962 61.111 0.00 0.00 0.00 3.01
36 37 3.010413 GCAGCAAGGTGGCCCAATC 62.010 63.158 0.00 0.00 0.00 2.67
37 38 2.999063 GCAGCAAGGTGGCCCAAT 60.999 61.111 0.00 0.00 0.00 3.16
38 39 4.536526 TGCAGCAAGGTGGCCCAA 62.537 61.111 0.00 0.00 0.00 4.12
41 42 4.982701 AGGTGCAGCAAGGTGGCC 62.983 66.667 19.63 0.00 0.00 5.36
42 43 0.967380 ATAAGGTGCAGCAAGGTGGC 60.967 55.000 19.63 0.00 0.00 5.01
43 44 1.549203 AATAAGGTGCAGCAAGGTGG 58.451 50.000 19.63 0.00 0.00 4.61
44 45 3.758554 AGTAAATAAGGTGCAGCAAGGTG 59.241 43.478 19.63 0.00 0.00 4.00
45 46 4.034285 AGTAAATAAGGTGCAGCAAGGT 57.966 40.909 19.63 2.67 0.00 3.50
46 47 5.048083 TGAAAGTAAATAAGGTGCAGCAAGG 60.048 40.000 19.63 0.00 0.00 3.61
47 48 6.012658 TGAAAGTAAATAAGGTGCAGCAAG 57.987 37.500 19.63 0.00 0.00 4.01
48 49 6.588719 ATGAAAGTAAATAAGGTGCAGCAA 57.411 33.333 19.63 6.01 0.00 3.91
49 50 6.389091 CAATGAAAGTAAATAAGGTGCAGCA 58.611 36.000 19.63 0.00 0.00 4.41
50 51 5.289434 GCAATGAAAGTAAATAAGGTGCAGC 59.711 40.000 8.11 8.11 0.00 5.25
51 52 6.624423 AGCAATGAAAGTAAATAAGGTGCAG 58.376 36.000 0.00 0.00 0.00 4.41
52 53 6.588719 AGCAATGAAAGTAAATAAGGTGCA 57.411 33.333 0.00 0.00 0.00 4.57
53 54 6.868339 ACAAGCAATGAAAGTAAATAAGGTGC 59.132 34.615 0.00 0.00 0.00 5.01
54 55 8.816640 AACAAGCAATGAAAGTAAATAAGGTG 57.183 30.769 0.00 0.00 0.00 4.00
55 56 9.908152 GTAACAAGCAATGAAAGTAAATAAGGT 57.092 29.630 0.00 0.00 0.00 3.50
99 100 9.959721 ATTGTAGGTTACAGATAGTTTTGTGAT 57.040 29.630 0.00 0.00 40.24 3.06
100 101 9.787435 AATTGTAGGTTACAGATAGTTTTGTGA 57.213 29.630 0.00 0.00 40.24 3.58
106 107 9.436957 CACTGAAATTGTAGGTTACAGATAGTT 57.563 33.333 0.00 0.00 40.24 2.24
107 108 7.549488 GCACTGAAATTGTAGGTTACAGATAGT 59.451 37.037 0.00 0.00 40.24 2.12
108 109 7.766278 AGCACTGAAATTGTAGGTTACAGATAG 59.234 37.037 0.00 0.00 40.24 2.08
109 110 7.620880 AGCACTGAAATTGTAGGTTACAGATA 58.379 34.615 0.00 0.00 40.24 1.98
110 111 6.476378 AGCACTGAAATTGTAGGTTACAGAT 58.524 36.000 0.00 0.00 40.24 2.90
111 112 5.865085 AGCACTGAAATTGTAGGTTACAGA 58.135 37.500 0.00 0.00 40.24 3.41
112 113 6.373779 CAAGCACTGAAATTGTAGGTTACAG 58.626 40.000 0.00 0.00 40.24 2.74
113 114 5.278266 GCAAGCACTGAAATTGTAGGTTACA 60.278 40.000 0.00 0.00 36.79 2.41
114 115 5.154222 GCAAGCACTGAAATTGTAGGTTAC 58.846 41.667 0.00 0.00 0.00 2.50
115 116 4.824537 TGCAAGCACTGAAATTGTAGGTTA 59.175 37.500 0.00 0.00 0.00 2.85
116 117 3.636300 TGCAAGCACTGAAATTGTAGGTT 59.364 39.130 0.00 0.00 0.00 3.50
117 118 3.221771 TGCAAGCACTGAAATTGTAGGT 58.778 40.909 0.00 0.00 0.00 3.08
118 119 3.503363 TCTGCAAGCACTGAAATTGTAGG 59.497 43.478 0.00 0.00 37.29 3.18
119 120 4.453478 TCTCTGCAAGCACTGAAATTGTAG 59.547 41.667 0.00 0.00 37.81 2.74
120 121 4.388485 TCTCTGCAAGCACTGAAATTGTA 58.612 39.130 0.00 0.00 0.00 2.41
121 122 3.216800 TCTCTGCAAGCACTGAAATTGT 58.783 40.909 0.00 0.00 0.00 2.71
122 123 3.909776 TCTCTGCAAGCACTGAAATTG 57.090 42.857 0.00 0.00 0.00 2.32
123 124 5.709164 AGTATTCTCTGCAAGCACTGAAATT 59.291 36.000 8.38 0.00 0.00 1.82
124 125 5.251764 AGTATTCTCTGCAAGCACTGAAAT 58.748 37.500 8.38 2.42 0.00 2.17
125 126 4.645535 AGTATTCTCTGCAAGCACTGAAA 58.354 39.130 8.38 0.00 0.00 2.69
126 127 4.277515 AGTATTCTCTGCAAGCACTGAA 57.722 40.909 7.21 7.21 0.00 3.02
127 128 3.969287 AGTATTCTCTGCAAGCACTGA 57.031 42.857 0.00 0.00 0.00 3.41
128 129 5.641209 AGTAAAGTATTCTCTGCAAGCACTG 59.359 40.000 0.00 0.00 0.00 3.66
129 130 5.641209 CAGTAAAGTATTCTCTGCAAGCACT 59.359 40.000 0.00 0.00 0.00 4.40
130 131 5.639506 TCAGTAAAGTATTCTCTGCAAGCAC 59.360 40.000 0.00 0.00 0.00 4.40
131 132 5.793817 TCAGTAAAGTATTCTCTGCAAGCA 58.206 37.500 0.00 0.00 0.00 3.91
132 133 6.727824 TTCAGTAAAGTATTCTCTGCAAGC 57.272 37.500 0.00 0.00 0.00 4.01
133 134 8.017946 GGTTTTCAGTAAAGTATTCTCTGCAAG 58.982 37.037 0.00 0.00 0.00 4.01
134 135 7.307751 CGGTTTTCAGTAAAGTATTCTCTGCAA 60.308 37.037 0.00 0.00 0.00 4.08
135 136 6.147164 CGGTTTTCAGTAAAGTATTCTCTGCA 59.853 38.462 0.00 0.00 0.00 4.41
136 137 6.534934 CGGTTTTCAGTAAAGTATTCTCTGC 58.465 40.000 0.00 0.00 0.00 4.26
137 138 6.369065 AGCGGTTTTCAGTAAAGTATTCTCTG 59.631 38.462 0.00 0.00 0.00 3.35
138 139 6.465084 AGCGGTTTTCAGTAAAGTATTCTCT 58.535 36.000 0.00 0.00 0.00 3.10
139 140 6.723131 AGCGGTTTTCAGTAAAGTATTCTC 57.277 37.500 0.00 0.00 0.00 2.87
140 141 6.485648 ACAAGCGGTTTTCAGTAAAGTATTCT 59.514 34.615 0.00 0.00 0.00 2.40
141 142 6.665465 ACAAGCGGTTTTCAGTAAAGTATTC 58.335 36.000 0.00 0.00 0.00 1.75
142 143 6.261381 TGACAAGCGGTTTTCAGTAAAGTATT 59.739 34.615 11.88 0.00 0.00 1.89
143 144 5.761234 TGACAAGCGGTTTTCAGTAAAGTAT 59.239 36.000 11.88 0.00 0.00 2.12
144 145 5.117584 TGACAAGCGGTTTTCAGTAAAGTA 58.882 37.500 11.88 0.00 0.00 2.24
145 146 3.942748 TGACAAGCGGTTTTCAGTAAAGT 59.057 39.130 11.88 0.00 0.00 2.66
146 147 4.545823 TGACAAGCGGTTTTCAGTAAAG 57.454 40.909 11.88 0.00 0.00 1.85
147 148 5.508200 AATGACAAGCGGTTTTCAGTAAA 57.492 34.783 19.55 0.00 0.00 2.01
148 149 5.506649 GGAAATGACAAGCGGTTTTCAGTAA 60.507 40.000 19.55 0.00 30.97 2.24
149 150 4.023536 GGAAATGACAAGCGGTTTTCAGTA 60.024 41.667 19.55 0.00 30.97 2.74
150 151 3.243401 GGAAATGACAAGCGGTTTTCAGT 60.243 43.478 19.55 15.19 30.97 3.41
151 152 3.004734 AGGAAATGACAAGCGGTTTTCAG 59.995 43.478 19.55 1.85 30.97 3.02
152 153 2.955660 AGGAAATGACAAGCGGTTTTCA 59.044 40.909 17.51 17.51 30.97 2.69
153 154 3.643159 AGGAAATGACAAGCGGTTTTC 57.357 42.857 6.56 6.56 0.00 2.29
154 155 3.636764 AGAAGGAAATGACAAGCGGTTTT 59.363 39.130 0.00 0.00 0.00 2.43
155 156 3.222603 AGAAGGAAATGACAAGCGGTTT 58.777 40.909 0.00 0.00 0.00 3.27
156 157 2.814336 GAGAAGGAAATGACAAGCGGTT 59.186 45.455 0.00 0.00 0.00 4.44
157 158 2.427506 GAGAAGGAAATGACAAGCGGT 58.572 47.619 0.00 0.00 0.00 5.68
158 159 1.740025 GGAGAAGGAAATGACAAGCGG 59.260 52.381 0.00 0.00 0.00 5.52
159 160 2.675348 GAGGAGAAGGAAATGACAAGCG 59.325 50.000 0.00 0.00 0.00 4.68
160 161 3.013219 GGAGGAGAAGGAAATGACAAGC 58.987 50.000 0.00 0.00 0.00 4.01
161 162 4.566426 AGGAGGAGAAGGAAATGACAAG 57.434 45.455 0.00 0.00 0.00 3.16
162 163 4.104738 ACAAGGAGGAGAAGGAAATGACAA 59.895 41.667 0.00 0.00 0.00 3.18
163 164 3.652869 ACAAGGAGGAGAAGGAAATGACA 59.347 43.478 0.00 0.00 0.00 3.58
164 165 4.293662 ACAAGGAGGAGAAGGAAATGAC 57.706 45.455 0.00 0.00 0.00 3.06
165 166 4.507335 CCAACAAGGAGGAGAAGGAAATGA 60.507 45.833 0.00 0.00 41.22 2.57
166 167 3.760684 CCAACAAGGAGGAGAAGGAAATG 59.239 47.826 0.00 0.00 41.22 2.32
167 168 3.657727 TCCAACAAGGAGGAGAAGGAAAT 59.342 43.478 0.00 0.00 43.07 2.17
168 169 3.053077 TCCAACAAGGAGGAGAAGGAAA 58.947 45.455 0.00 0.00 43.07 3.13
169 170 2.701551 TCCAACAAGGAGGAGAAGGAA 58.298 47.619 0.00 0.00 43.07 3.36
170 171 2.415983 TCCAACAAGGAGGAGAAGGA 57.584 50.000 0.00 0.00 43.07 3.36
180 181 3.045601 AGAGTGTCGAATCCAACAAGG 57.954 47.619 0.00 0.00 39.47 3.61
181 182 5.230942 AGTAAGAGTGTCGAATCCAACAAG 58.769 41.667 0.00 0.00 0.00 3.16
182 183 5.209818 AGTAAGAGTGTCGAATCCAACAA 57.790 39.130 0.00 0.00 0.00 2.83
183 184 4.866508 AGTAAGAGTGTCGAATCCAACA 57.133 40.909 0.00 0.00 0.00 3.33
184 185 6.196724 CGATAAGTAAGAGTGTCGAATCCAAC 59.803 42.308 0.00 0.00 0.00 3.77
185 186 6.094464 TCGATAAGTAAGAGTGTCGAATCCAA 59.906 38.462 0.00 0.00 35.48 3.53
186 187 5.587443 TCGATAAGTAAGAGTGTCGAATCCA 59.413 40.000 0.00 0.00 35.48 3.41
187 188 6.057627 TCGATAAGTAAGAGTGTCGAATCC 57.942 41.667 0.00 0.00 35.48 3.01
188 189 7.166142 CCTTTCGATAAGTAAGAGTGTCGAATC 59.834 40.741 8.54 0.00 44.33 2.52
189 190 6.973474 CCTTTCGATAAGTAAGAGTGTCGAAT 59.027 38.462 8.54 0.00 44.33 3.34
190 191 6.149973 TCCTTTCGATAAGTAAGAGTGTCGAA 59.850 38.462 4.17 4.17 43.60 3.71
191 192 5.645067 TCCTTTCGATAAGTAAGAGTGTCGA 59.355 40.000 0.00 0.00 36.46 4.20
192 193 5.738225 GTCCTTTCGATAAGTAAGAGTGTCG 59.262 44.000 0.00 0.00 29.89 4.35
193 194 6.854778 AGTCCTTTCGATAAGTAAGAGTGTC 58.145 40.000 0.00 0.00 29.89 3.67
194 195 6.837471 AGTCCTTTCGATAAGTAAGAGTGT 57.163 37.500 0.00 0.00 29.89 3.55
195 196 7.759465 TGTAGTCCTTTCGATAAGTAAGAGTG 58.241 38.462 0.00 0.00 29.89 3.51
196 197 7.934855 TGTAGTCCTTTCGATAAGTAAGAGT 57.065 36.000 0.00 0.00 29.89 3.24
197 198 7.701501 GGTTGTAGTCCTTTCGATAAGTAAGAG 59.298 40.741 0.00 0.00 29.89 2.85
198 199 7.395489 AGGTTGTAGTCCTTTCGATAAGTAAGA 59.605 37.037 0.00 0.00 29.89 2.10
199 200 7.488471 CAGGTTGTAGTCCTTTCGATAAGTAAG 59.512 40.741 0.00 0.00 32.37 2.34
200 201 7.039504 ACAGGTTGTAGTCCTTTCGATAAGTAA 60.040 37.037 0.00 0.00 32.37 2.24
201 202 6.435277 ACAGGTTGTAGTCCTTTCGATAAGTA 59.565 38.462 0.00 0.00 32.37 2.24
202 203 5.245526 ACAGGTTGTAGTCCTTTCGATAAGT 59.754 40.000 0.00 0.00 32.37 2.24
203 204 5.721232 ACAGGTTGTAGTCCTTTCGATAAG 58.279 41.667 0.00 0.00 32.37 1.73
204 205 5.733620 ACAGGTTGTAGTCCTTTCGATAA 57.266 39.130 0.00 0.00 32.37 1.75
205 206 5.244402 TCAACAGGTTGTAGTCCTTTCGATA 59.756 40.000 11.55 0.00 41.16 2.92
206 207 4.039973 TCAACAGGTTGTAGTCCTTTCGAT 59.960 41.667 11.55 0.00 41.16 3.59
207 208 3.385433 TCAACAGGTTGTAGTCCTTTCGA 59.615 43.478 11.55 0.00 41.16 3.71
208 209 3.493503 GTCAACAGGTTGTAGTCCTTTCG 59.506 47.826 11.55 0.00 41.16 3.46
209 210 3.493503 CGTCAACAGGTTGTAGTCCTTTC 59.506 47.826 11.55 0.00 41.16 2.62
210 211 3.463944 CGTCAACAGGTTGTAGTCCTTT 58.536 45.455 11.55 0.00 41.16 3.11
211 212 2.805657 GCGTCAACAGGTTGTAGTCCTT 60.806 50.000 11.55 0.00 41.16 3.36
212 213 1.270147 GCGTCAACAGGTTGTAGTCCT 60.270 52.381 11.55 0.00 41.16 3.85
213 214 1.145803 GCGTCAACAGGTTGTAGTCC 58.854 55.000 11.55 0.00 41.16 3.85
214 215 0.782384 CGCGTCAACAGGTTGTAGTC 59.218 55.000 11.55 2.06 41.16 2.59
215 216 1.219522 GCGCGTCAACAGGTTGTAGT 61.220 55.000 8.43 0.00 41.16 2.73
216 217 0.944311 AGCGCGTCAACAGGTTGTAG 60.944 55.000 8.43 8.23 41.16 2.74
217 218 0.942410 GAGCGCGTCAACAGGTTGTA 60.942 55.000 8.43 0.00 41.16 2.41
218 219 2.203015 AGCGCGTCAACAGGTTGT 60.203 55.556 8.43 0.00 41.16 3.32
219 220 1.891060 GAGAGCGCGTCAACAGGTTG 61.891 60.000 8.43 5.81 41.71 3.77
220 221 1.664965 GAGAGCGCGTCAACAGGTT 60.665 57.895 8.43 0.00 0.00 3.50
221 222 2.049063 GAGAGCGCGTCAACAGGT 60.049 61.111 8.43 0.00 0.00 4.00
222 223 2.049156 TGAGAGCGCGTCAACAGG 60.049 61.111 8.43 0.00 0.00 4.00
223 224 2.724708 GCTGAGAGCGCGTCAACAG 61.725 63.158 15.16 16.53 35.95 3.16
224 225 2.734723 GCTGAGAGCGCGTCAACA 60.735 61.111 15.16 7.93 0.00 3.33
236 237 3.723235 ATACGTGGCGGCAGCTGAG 62.723 63.158 20.43 11.77 44.37 3.35
237 238 3.716539 GATACGTGGCGGCAGCTGA 62.717 63.158 20.43 0.00 44.37 4.26
238 239 3.264897 GATACGTGGCGGCAGCTG 61.265 66.667 13.91 10.11 44.37 4.24
239 240 4.873129 CGATACGTGGCGGCAGCT 62.873 66.667 13.91 2.13 44.37 4.24
249 250 2.494918 GGGCAGAGCACGATACGT 59.505 61.111 0.00 0.00 42.36 3.57
256 257 3.959991 GAGGGAACGGGCAGAGCAC 62.960 68.421 0.00 0.00 0.00 4.40
257 258 3.706373 GAGGGAACGGGCAGAGCA 61.706 66.667 0.00 0.00 0.00 4.26
258 259 4.475135 GGAGGGAACGGGCAGAGC 62.475 72.222 0.00 0.00 0.00 4.09
259 260 4.148825 CGGAGGGAACGGGCAGAG 62.149 72.222 0.00 0.00 0.00 3.35
260 261 4.689549 TCGGAGGGAACGGGCAGA 62.690 66.667 0.00 0.00 0.00 4.26
261 262 2.536997 AATTCGGAGGGAACGGGCAG 62.537 60.000 0.00 0.00 37.50 4.85
262 263 2.132089 AAATTCGGAGGGAACGGGCA 62.132 55.000 0.00 0.00 37.50 5.36
263 264 0.963856 AAAATTCGGAGGGAACGGGC 60.964 55.000 0.00 0.00 37.50 6.13
264 265 2.406596 TAAAATTCGGAGGGAACGGG 57.593 50.000 0.00 0.00 37.50 5.28
265 266 4.976224 AAATAAAATTCGGAGGGAACGG 57.024 40.909 0.00 0.00 37.50 4.44
266 267 8.920509 AAATAAAATAAAATTCGGAGGGAACG 57.079 30.769 0.00 0.00 37.50 3.95
287 288 8.484008 GCAAACGCATACAGAAAAAGAAAAATA 58.516 29.630 0.00 0.00 0.00 1.40
288 289 7.344441 GCAAACGCATACAGAAAAAGAAAAAT 58.656 30.769 0.00 0.00 0.00 1.82
289 290 6.507141 CGCAAACGCATACAGAAAAAGAAAAA 60.507 34.615 0.00 0.00 0.00 1.94
290 291 5.052040 CGCAAACGCATACAGAAAAAGAAAA 60.052 36.000 0.00 0.00 0.00 2.29
291 292 4.439449 CGCAAACGCATACAGAAAAAGAAA 59.561 37.500 0.00 0.00 0.00 2.52
292 293 3.971871 CGCAAACGCATACAGAAAAAGAA 59.028 39.130 0.00 0.00 0.00 2.52
293 294 3.550561 CGCAAACGCATACAGAAAAAGA 58.449 40.909 0.00 0.00 0.00 2.52
294 295 2.656422 CCGCAAACGCATACAGAAAAAG 59.344 45.455 0.00 0.00 38.22 2.27
295 296 2.033550 ACCGCAAACGCATACAGAAAAA 59.966 40.909 0.00 0.00 38.22 1.94
296 297 1.604755 ACCGCAAACGCATACAGAAAA 59.395 42.857 0.00 0.00 38.22 2.29
297 298 1.231221 ACCGCAAACGCATACAGAAA 58.769 45.000 0.00 0.00 38.22 2.52
298 299 1.231221 AACCGCAAACGCATACAGAA 58.769 45.000 0.00 0.00 38.22 3.02
299 300 1.231221 AAACCGCAAACGCATACAGA 58.769 45.000 0.00 0.00 38.22 3.41
300 301 2.044888 AAAACCGCAAACGCATACAG 57.955 45.000 0.00 0.00 38.22 2.74
301 302 2.493713 AAAAACCGCAAACGCATACA 57.506 40.000 0.00 0.00 38.22 2.29
302 303 3.812656 TCTAAAAACCGCAAACGCATAC 58.187 40.909 0.00 0.00 38.22 2.39
303 304 4.154375 TCATCTAAAAACCGCAAACGCATA 59.846 37.500 0.00 0.00 38.22 3.14
304 305 3.057876 TCATCTAAAAACCGCAAACGCAT 60.058 39.130 0.00 0.00 38.22 4.73
305 306 2.290916 TCATCTAAAAACCGCAAACGCA 59.709 40.909 0.00 0.00 38.22 5.24
306 307 2.923643 TCATCTAAAAACCGCAAACGC 58.076 42.857 0.00 0.00 38.22 4.84
307 308 6.446659 AAAATCATCTAAAAACCGCAAACG 57.553 33.333 0.00 0.00 39.67 3.60
308 309 9.952341 GATAAAAATCATCTAAAAACCGCAAAC 57.048 29.630 0.00 0.00 0.00 2.93
309 310 9.921637 AGATAAAAATCATCTAAAAACCGCAAA 57.078 25.926 0.00 0.00 30.89 3.68
310 311 9.921637 AAGATAAAAATCATCTAAAAACCGCAA 57.078 25.926 0.00 0.00 32.40 4.85
311 312 9.921637 AAAGATAAAAATCATCTAAAAACCGCA 57.078 25.926 0.00 0.00 32.40 5.69
337 338 8.052748 ACATACATCTATCACCTAAGCCAAAAA 58.947 33.333 0.00 0.00 0.00 1.94
338 339 7.573710 ACATACATCTATCACCTAAGCCAAAA 58.426 34.615 0.00 0.00 0.00 2.44
339 340 7.136822 ACATACATCTATCACCTAAGCCAAA 57.863 36.000 0.00 0.00 0.00 3.28
340 341 6.747414 ACATACATCTATCACCTAAGCCAA 57.253 37.500 0.00 0.00 0.00 4.52
341 342 6.524734 CAACATACATCTATCACCTAAGCCA 58.475 40.000 0.00 0.00 0.00 4.75
342 343 5.409826 GCAACATACATCTATCACCTAAGCC 59.590 44.000 0.00 0.00 0.00 4.35
343 344 6.146837 CAGCAACATACATCTATCACCTAAGC 59.853 42.308 0.00 0.00 0.00 3.09
344 345 6.648310 CCAGCAACATACATCTATCACCTAAG 59.352 42.308 0.00 0.00 0.00 2.18
345 346 6.326323 TCCAGCAACATACATCTATCACCTAA 59.674 38.462 0.00 0.00 0.00 2.69
530 531 3.244422 ACCGTATGAGCAGGTTTGAAAGA 60.244 43.478 0.00 0.00 33.96 2.52
596 597 9.487790 TTTTTCGCATCAAAAATTCTAAATCCT 57.512 25.926 0.00 0.00 31.65 3.24
620 621 4.340263 GAGAAGACAAAAGAACGCGTTTT 58.660 39.130 27.32 18.61 0.00 2.43
621 622 3.543460 CGAGAAGACAAAAGAACGCGTTT 60.543 43.478 27.32 13.11 0.00 3.60
625 626 2.538449 TCACGAGAAGACAAAAGAACGC 59.462 45.455 0.00 0.00 0.00 4.84
626 627 4.042398 TCTCACGAGAAGACAAAAGAACG 58.958 43.478 0.00 0.00 33.91 3.95
627 628 4.446051 CCTCTCACGAGAAGACAAAAGAAC 59.554 45.833 0.00 0.00 39.74 3.01
628 629 4.621991 CCTCTCACGAGAAGACAAAAGAA 58.378 43.478 0.00 0.00 39.74 2.52
629 630 3.553096 GCCTCTCACGAGAAGACAAAAGA 60.553 47.826 0.00 0.00 39.74 2.52
630 631 2.734079 GCCTCTCACGAGAAGACAAAAG 59.266 50.000 0.00 0.00 39.74 2.27
632 633 1.686587 TGCCTCTCACGAGAAGACAAA 59.313 47.619 0.00 0.00 39.74 2.83
633 634 1.000163 GTGCCTCTCACGAGAAGACAA 60.000 52.381 0.00 0.00 39.74 3.18
634 635 0.598562 GTGCCTCTCACGAGAAGACA 59.401 55.000 0.00 0.00 39.74 3.41
635 636 3.410098 GTGCCTCTCACGAGAAGAC 57.590 57.895 0.00 0.00 39.74 3.01
644 645 5.047731 CGAGGAAATAGATATGTGCCTCTCA 60.048 44.000 0.00 0.00 38.57 3.27
645 646 5.406649 CGAGGAAATAGATATGTGCCTCTC 58.593 45.833 0.00 0.00 38.57 3.20
646 647 4.221703 CCGAGGAAATAGATATGTGCCTCT 59.778 45.833 0.00 0.00 38.57 3.69
647 648 4.021016 ACCGAGGAAATAGATATGTGCCTC 60.021 45.833 0.00 0.00 37.63 4.70
648 649 3.904339 ACCGAGGAAATAGATATGTGCCT 59.096 43.478 0.00 0.00 0.00 4.75
649 650 4.273148 ACCGAGGAAATAGATATGTGCC 57.727 45.455 0.00 0.00 0.00 5.01
650 651 6.619801 AAAACCGAGGAAATAGATATGTGC 57.380 37.500 0.00 0.00 0.00 4.57
651 652 7.282224 TCCAAAAACCGAGGAAATAGATATGTG 59.718 37.037 0.00 0.00 0.00 3.21
652 653 7.343357 TCCAAAAACCGAGGAAATAGATATGT 58.657 34.615 0.00 0.00 0.00 2.29
653 654 7.801716 TCCAAAAACCGAGGAAATAGATATG 57.198 36.000 0.00 0.00 0.00 1.78
654 655 8.996651 AATCCAAAAACCGAGGAAATAGATAT 57.003 30.769 0.00 0.00 34.62 1.63
655 656 8.817092 AAATCCAAAAACCGAGGAAATAGATA 57.183 30.769 0.00 0.00 34.62 1.98
656 657 7.718334 AAATCCAAAAACCGAGGAAATAGAT 57.282 32.000 0.00 0.00 34.62 1.98
657 658 7.533289 AAAATCCAAAAACCGAGGAAATAGA 57.467 32.000 0.00 0.00 34.62 1.98
797 798 0.326595 ACACGGATTGTATGGGTGCA 59.673 50.000 0.00 0.00 36.32 4.57
799 800 0.732571 GCACACGGATTGTATGGGTG 59.267 55.000 0.00 0.00 35.67 4.61
800 801 0.393808 GGCACACGGATTGTATGGGT 60.394 55.000 0.00 0.00 35.67 4.51
801 802 1.101049 GGGCACACGGATTGTATGGG 61.101 60.000 0.00 0.00 35.67 4.00
802 803 1.101049 GGGGCACACGGATTGTATGG 61.101 60.000 0.00 0.00 35.67 2.74
803 804 1.101049 GGGGGCACACGGATTGTATG 61.101 60.000 0.00 0.00 35.67 2.39
804 805 1.226262 GGGGGCACACGGATTGTAT 59.774 57.895 0.00 0.00 35.67 2.29
805 806 2.672295 GGGGGCACACGGATTGTA 59.328 61.111 0.00 0.00 35.67 2.41
829 830 4.354943 AGGAGAGGGTGGGGGTGG 62.355 72.222 0.00 0.00 0.00 4.61
863 864 9.936759 GGGTCCTTCATCAAAACAAAATAATAA 57.063 29.630 0.00 0.00 0.00 1.40
864 865 8.536175 GGGGTCCTTCATCAAAACAAAATAATA 58.464 33.333 0.00 0.00 0.00 0.98
865 866 7.237471 AGGGGTCCTTCATCAAAACAAAATAAT 59.763 33.333 0.00 0.00 0.00 1.28
866 867 6.556874 AGGGGTCCTTCATCAAAACAAAATAA 59.443 34.615 0.00 0.00 0.00 1.40
867 868 6.081356 AGGGGTCCTTCATCAAAACAAAATA 58.919 36.000 0.00 0.00 0.00 1.40
868 869 4.907269 AGGGGTCCTTCATCAAAACAAAAT 59.093 37.500 0.00 0.00 0.00 1.82
873 874 2.447443 GGAGGGGTCCTTCATCAAAAC 58.553 52.381 1.61 0.00 31.76 2.43
878 879 2.191981 TAAGGGAGGGGTCCTTCATC 57.808 55.000 0.00 0.00 43.02 2.92
1072 1766 2.358984 GGTAGGGTTTTGCGGCGA 60.359 61.111 12.98 0.00 0.00 5.54
1131 1831 1.944177 TCTGGAGGTTGGAGAAGGAG 58.056 55.000 0.00 0.00 0.00 3.69
1473 2173 4.754667 GGACCTCCGAACGGTGCC 62.755 72.222 12.93 4.95 36.95 5.01
1875 2590 2.268920 GGCATTCTCACGCCTCCA 59.731 61.111 0.00 0.00 45.29 3.86
1880 3737 2.401766 CCACCAGGCATTCTCACGC 61.402 63.158 0.00 0.00 0.00 5.34
2155 4029 9.769093 ATGCTATTTGACGAAATTAACAAGTAC 57.231 29.630 0.00 0.00 33.63 2.73
2183 4057 0.325933 TGCAGCCTACAATCAGCACT 59.674 50.000 0.00 0.00 0.00 4.40
2663 6727 2.841442 AGTTGCACAAGTACTCCCTC 57.159 50.000 0.00 0.00 0.00 4.30
3032 7959 2.622436 CACTCGGAAACTGGGAGAATC 58.378 52.381 0.00 0.00 0.00 2.52
3071 7998 1.148048 GGGGATGCTCTCCAGAAGC 59.852 63.158 7.98 0.00 46.98 3.86
3116 8043 0.101759 CTGCCCCAAATGCTGAATCG 59.898 55.000 0.00 0.00 0.00 3.34
3386 8313 6.696825 ACAACTGATATCGAAGCAATATCG 57.303 37.500 0.00 0.00 38.43 2.92
3518 8445 0.592637 CACGCATGACAGCCTCAAAA 59.407 50.000 0.00 0.00 30.60 2.44
4069 9249 3.742433 ACACAGAAACTGAGGAGACAG 57.258 47.619 5.76 0.00 42.78 3.51
4151 9416 4.623932 TGGAATAAGGGAATCCTCATCG 57.376 45.455 0.00 0.00 44.07 3.84
4350 9854 5.389859 TTTACTTTCCTGGACAATGCATG 57.610 39.130 0.00 0.00 0.00 4.06
4490 10192 0.395724 CCACATAGGAAAGGCCACCC 60.396 60.000 5.01 2.14 41.22 4.61
4762 10566 4.097714 CGCTTTATGTAACAACAGCATGG 58.902 43.478 0.00 0.00 43.62 3.66
4785 10589 7.709182 GGCAAGGAAACCATACCAAATATAAAC 59.291 37.037 0.00 0.00 0.00 2.01
4786 10590 7.621683 AGGCAAGGAAACCATACCAAATATAAA 59.378 33.333 0.00 0.00 0.00 1.40
4787 10591 7.129425 AGGCAAGGAAACCATACCAAATATAA 58.871 34.615 0.00 0.00 0.00 0.98
4810 10614 4.069304 CTCAGATAAGTCCCTCGAGTAGG 58.931 52.174 12.31 6.53 46.09 3.18
4820 10624 5.221165 GCCTGTAGAAGACTCAGATAAGTCC 60.221 48.000 0.61 0.00 45.61 3.85
4830 10634 2.100087 GCCTGTAGCCTGTAGAAGACTC 59.900 54.545 0.00 0.00 34.35 3.36
4831 10635 2.104170 GCCTGTAGCCTGTAGAAGACT 58.896 52.381 0.00 0.00 34.35 3.24
4942 10761 3.153919 CAAGAATTTTGGGACGGAGGAA 58.846 45.455 0.00 0.00 0.00 3.36
4944 10763 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4945 10764 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4946 10765 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4947 10766 5.897377 ATAAGACAAGAATTTTGGGACGG 57.103 39.130 0.00 0.00 0.00 4.79
4949 10768 6.596497 TCCGTATAAGACAAGAATTTTGGGAC 59.404 38.462 5.68 0.00 0.00 4.46
4951 10770 6.995511 TCCGTATAAGACAAGAATTTTGGG 57.004 37.500 5.68 0.00 0.00 4.12
4957 10776 9.698309 CTTGATACATCCGTATAAGACAAGAAT 57.302 33.333 0.00 0.00 37.88 2.40
4958 10777 8.692710 ACTTGATACATCCGTATAAGACAAGAA 58.307 33.333 0.00 0.00 37.88 2.52
4959 10778 8.234136 ACTTGATACATCCGTATAAGACAAGA 57.766 34.615 0.00 0.00 37.88 3.02
4960 10779 8.135529 TGACTTGATACATCCGTATAAGACAAG 58.864 37.037 0.00 0.00 39.63 3.16
4961 10780 8.002984 TGACTTGATACATCCGTATAAGACAA 57.997 34.615 0.00 0.00 38.48 3.18
4962 10781 7.576861 TGACTTGATACATCCGTATAAGACA 57.423 36.000 0.00 0.00 38.48 3.41
4963 10782 8.082852 ACATGACTTGATACATCCGTATAAGAC 58.917 37.037 0.00 0.00 38.48 3.01
4965 10784 8.818141 AACATGACTTGATACATCCGTATAAG 57.182 34.615 0.00 0.00 38.48 1.73
4967 10786 9.607988 AAAAACATGACTTGATACATCCGTATA 57.392 29.630 0.00 0.00 38.48 1.47
4968 10787 8.397906 CAAAAACATGACTTGATACATCCGTAT 58.602 33.333 0.00 0.00 41.16 3.06
4970 10789 6.206634 ACAAAAACATGACTTGATACATCCGT 59.793 34.615 0.00 0.00 0.00 4.69
4971 10790 6.611381 ACAAAAACATGACTTGATACATCCG 58.389 36.000 0.00 0.00 0.00 4.18
5003 10822 9.314321 CCAAGTAATTTGTCTAGATACGAATGT 57.686 33.333 0.00 0.00 34.38 2.71
5004 10823 9.529325 TCCAAGTAATTTGTCTAGATACGAATG 57.471 33.333 0.00 0.00 34.38 2.67
5006 10825 9.582431 CTTCCAAGTAATTTGTCTAGATACGAA 57.418 33.333 0.00 0.00 34.87 3.85
5007 10826 8.963725 TCTTCCAAGTAATTTGTCTAGATACGA 58.036 33.333 0.00 0.00 34.87 3.43
5008 10827 9.021863 GTCTTCCAAGTAATTTGTCTAGATACG 57.978 37.037 0.00 0.00 34.87 3.06
5009 10828 9.871238 TGTCTTCCAAGTAATTTGTCTAGATAC 57.129 33.333 0.00 0.00 34.87 2.24
5015 10834 9.574516 AACTTATGTCTTCCAAGTAATTTGTCT 57.425 29.630 0.00 0.00 34.87 3.41
5016 10835 9.612620 CAACTTATGTCTTCCAAGTAATTTGTC 57.387 33.333 0.00 0.00 34.87 3.18
5017 10836 9.349713 TCAACTTATGTCTTCCAAGTAATTTGT 57.650 29.630 0.00 0.00 34.87 2.83
5018 10837 9.612620 GTCAACTTATGTCTTCCAAGTAATTTG 57.387 33.333 0.00 0.00 32.35 2.32
5019 10838 9.574516 AGTCAACTTATGTCTTCCAAGTAATTT 57.425 29.630 0.00 0.00 32.35 1.82
5051 10870 4.574828 GTCACAAAGGACTAAGCTGTTGAA 59.425 41.667 0.00 0.00 34.92 2.69
5054 10873 4.423625 AGTCACAAAGGACTAAGCTGTT 57.576 40.909 0.00 0.00 45.95 3.16
5107 10926 1.950630 GCACAGGTTGCCAAAAGCG 60.951 57.895 0.00 0.00 46.63 4.68
5108 10927 4.032356 GCACAGGTTGCCAAAAGC 57.968 55.556 0.00 0.00 46.63 3.51
5118 10947 1.005630 GCAACGAGAGAGCACAGGT 60.006 57.895 0.00 0.00 36.13 4.00
5119 10948 2.091112 CGCAACGAGAGAGCACAGG 61.091 63.158 0.00 0.00 35.92 4.00
5124 10953 4.443266 AGGCCGCAACGAGAGAGC 62.443 66.667 0.00 0.00 0.00 4.09
5143 10972 1.919816 TGGCAGGGATCAGCTGACA 60.920 57.895 20.97 7.77 33.16 3.58
5152 10981 1.684248 GCTTGAATCAGTGGCAGGGAT 60.684 52.381 0.00 0.00 0.00 3.85
5157 10986 0.609957 CCTGGCTTGAATCAGTGGCA 60.610 55.000 12.18 12.18 0.00 4.92
5174 11003 3.252284 CCAGCCACCACTCCACCT 61.252 66.667 0.00 0.00 0.00 4.00
5175 11004 2.142292 ATTCCAGCCACCACTCCACC 62.142 60.000 0.00 0.00 0.00 4.61
5189 11018 0.316841 GCACGGCTTTCCAAATTCCA 59.683 50.000 0.00 0.00 0.00 3.53
5190 11019 0.389817 GGCACGGCTTTCCAAATTCC 60.390 55.000 0.00 0.00 0.00 3.01
5191 11020 0.389817 GGGCACGGCTTTCCAAATTC 60.390 55.000 0.00 0.00 0.00 2.17
5192 11021 0.831711 AGGGCACGGCTTTCCAAATT 60.832 50.000 0.00 0.00 0.00 1.82
5193 11022 1.228862 AGGGCACGGCTTTCCAAAT 60.229 52.632 0.00 0.00 0.00 2.32
5194 11023 2.197324 AGGGCACGGCTTTCCAAA 59.803 55.556 0.00 0.00 0.00 3.28
5195 11024 2.424842 ATCAGGGCACGGCTTTCCAA 62.425 55.000 0.00 0.00 0.00 3.53
5209 11038 1.667724 CCGCTGTGCTTTAGAATCAGG 59.332 52.381 0.00 0.00 0.00 3.86
5233 11062 0.035056 AGAGCAAGGGAATGGGAACG 60.035 55.000 0.00 0.00 0.00 3.95
5278 11107 1.560860 AAGACGCAGCTGTTTCGCTC 61.561 55.000 16.64 10.28 38.41 5.03
5341 11282 1.219664 CAATCCCTACGCACCGGAA 59.780 57.895 9.46 0.00 0.00 4.30
5367 11308 2.121042 AGGGGCCCCTTCTCCAAA 60.121 61.111 39.79 0.00 45.70 3.28
5376 11317 4.796495 CGTGCTTGTAGGGGCCCC 62.796 72.222 35.90 35.90 0.00 5.80
5377 11318 3.971109 GACGTGCTTGTAGGGGCCC 62.971 68.421 17.12 17.12 0.00 5.80
5378 11319 1.610554 TAGACGTGCTTGTAGGGGCC 61.611 60.000 0.00 0.00 0.00 5.80
5387 12101 1.437986 GCGGAGGATAGACGTGCTT 59.562 57.895 0.00 0.00 0.00 3.91
5388 12102 2.491022 GGCGGAGGATAGACGTGCT 61.491 63.158 0.00 0.00 0.00 4.40
5392 12106 2.638154 GACGGCGGAGGATAGACG 59.362 66.667 13.24 0.00 45.74 4.18
5399 12113 2.434359 GAGTTTGGACGGCGGAGG 60.434 66.667 13.24 0.00 0.00 4.30
5400 12114 1.738099 CAGAGTTTGGACGGCGGAG 60.738 63.158 13.24 0.00 0.00 4.63
5401 12115 2.342279 CAGAGTTTGGACGGCGGA 59.658 61.111 13.24 0.00 0.00 5.54
5402 12116 3.423154 GCAGAGTTTGGACGGCGG 61.423 66.667 13.24 0.00 0.00 6.13
5403 12117 3.423154 GGCAGAGTTTGGACGGCG 61.423 66.667 4.80 4.80 0.00 6.46
5415 12129 2.717639 GGCTTATTCTCCAAGGCAGA 57.282 50.000 4.01 0.00 45.29 4.26
5419 12133 4.428294 TCTCATGGCTTATTCTCCAAGG 57.572 45.455 0.00 0.00 35.75 3.61
5442 12156 3.967401 GGCGCCGCCTAAAATTAAATTA 58.033 40.909 23.30 0.00 46.69 1.40
5461 12175 0.673985 GTGGTCTGGAAGGTTTTGGC 59.326 55.000 0.00 0.00 0.00 4.52
5493 12207 7.487484 TGCAATTTGTTGAACTGATAAAGTCA 58.513 30.769 0.00 0.00 38.56 3.41
5506 12220 7.043961 TGGTGTACTTAATGCAATTTGTTGA 57.956 32.000 0.00 0.00 37.87 3.18
5509 12223 6.397272 CCATGGTGTACTTAATGCAATTTGT 58.603 36.000 2.57 0.00 37.87 2.83
5511 12225 5.046735 TGCCATGGTGTACTTAATGCAATTT 60.047 36.000 14.67 0.00 37.87 1.82
5516 12230 2.099098 GGTGCCATGGTGTACTTAATGC 59.901 50.000 14.67 0.00 0.00 3.56
5521 12235 1.003580 CTCTGGTGCCATGGTGTACTT 59.996 52.381 14.67 0.00 0.00 2.24
5522 12236 0.615331 CTCTGGTGCCATGGTGTACT 59.385 55.000 14.67 0.00 0.00 2.73
5527 12241 2.759114 CCACTCTGGTGCCATGGT 59.241 61.111 14.67 0.00 41.75 3.55
5530 12244 1.077212 GATGCCACTCTGGTGCCAT 60.077 57.895 0.00 0.00 42.99 4.40
5536 12250 0.477204 ATGGATGGATGCCACTCTGG 59.523 55.000 0.00 0.00 41.55 3.86
5543 12257 4.321230 GGAAATTTACGATGGATGGATGCC 60.321 45.833 0.00 0.00 0.00 4.40
5630 12344 3.430556 TGTCGACCACATACAACAATTCG 59.569 43.478 14.12 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.