Multiple sequence alignment - TraesCS4B01G106600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G106600 chr4B 100.000 3488 0 0 1 3488 116208507 116211994 0.000000e+00 6442
1 TraesCS4B01G106600 chr4A 96.954 2758 61 9 733 3488 492527242 492529978 0.000000e+00 4606
2 TraesCS4B01G106600 chr4A 92.505 507 32 3 202 708 492526463 492526963 0.000000e+00 721
3 TraesCS4B01G106600 chr4D 96.661 2546 61 6 953 3488 82288391 82290922 0.000000e+00 4209
4 TraesCS4B01G106600 chr4D 92.323 508 33 3 202 709 82287189 82287690 0.000000e+00 717
5 TraesCS4B01G106600 chr4D 94.798 173 8 1 1 172 82287016 82287188 5.740000e-68 268
6 TraesCS4B01G106600 chr4D 92.432 185 12 2 735 918 82287982 82288165 2.670000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G106600 chr4B 116208507 116211994 3487 False 6442.00 6442 100.0000 1 3488 1 chr4B.!!$F1 3487
1 TraesCS4B01G106600 chr4A 492526463 492529978 3515 False 2663.50 4606 94.7295 202 3488 2 chr4A.!!$F1 3286
2 TraesCS4B01G106600 chr4D 82287016 82290922 3906 False 1364.25 4209 94.0535 1 3488 4 chr4D.!!$F1 3487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 184 0.099436 CTTTAGCTGCCATTGGTCGC 59.901 55.0 4.26 7.35 0.00 5.19 F
625 627 0.462759 GCCGGGGACTGAAATGAGAG 60.463 60.0 2.18 0.00 36.31 3.20 F
763 1039 0.533531 TGGAGGCATTATGCGCTGAG 60.534 55.0 9.73 0.00 46.21 3.35 F
1473 1948 0.321653 GTCTCCTGGTCAATGCGGTT 60.322 55.0 0.00 0.00 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 1719 0.325765 GAGAGCTAAGAGGGGTGGGT 60.326 60.000 0.00 0.0 0.0 4.51 R
1473 1948 0.454600 GCATCTCGTCGAACACCCTA 59.545 55.000 0.00 0.0 0.0 3.53 R
1914 2389 2.631062 TGTGAAGGTGATACAGTTCGGT 59.369 45.455 0.00 0.0 0.0 4.69 R
2845 3320 1.649664 TTTGCATGCAACTGCGTTTT 58.350 40.000 31.99 0.0 45.3 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.406456 TGCTATTGTGTTGGACTCCATTT 58.594 39.130 0.00 0.00 31.53 2.32
55 56 8.737168 TGGTCTCGATAATCAAGATGAAAATT 57.263 30.769 0.00 0.00 0.00 1.82
76 77 6.867662 ATTCTTATTCATGACATTCCGGTC 57.132 37.500 0.00 0.00 38.29 4.79
94 95 2.261671 GGACGTGGCAGTCGACAT 59.738 61.111 19.50 0.00 41.81 3.06
100 102 1.127951 CGTGGCAGTCGACATAAAACC 59.872 52.381 19.50 9.64 27.97 3.27
137 139 0.251297 CATCCAAAGCCCCACACTGA 60.251 55.000 0.00 0.00 0.00 3.41
151 153 4.201950 CCCACACTGAAAACTTCTTGTCTG 60.202 45.833 0.00 0.00 0.00 3.51
172 174 2.162408 GTGGATCCACAACTTTAGCTGC 59.838 50.000 35.21 7.18 45.53 5.25
173 175 1.745653 GGATCCACAACTTTAGCTGCC 59.254 52.381 6.95 0.00 0.00 4.85
174 176 2.436417 GATCCACAACTTTAGCTGCCA 58.564 47.619 0.00 0.00 0.00 4.92
175 177 2.584835 TCCACAACTTTAGCTGCCAT 57.415 45.000 0.00 0.00 0.00 4.40
176 178 2.875296 TCCACAACTTTAGCTGCCATT 58.125 42.857 0.00 0.00 0.00 3.16
177 179 2.557924 TCCACAACTTTAGCTGCCATTG 59.442 45.455 0.00 0.00 0.00 2.82
178 180 2.353011 CCACAACTTTAGCTGCCATTGG 60.353 50.000 0.00 0.00 0.00 3.16
179 181 2.297033 CACAACTTTAGCTGCCATTGGT 59.703 45.455 4.26 0.00 0.00 3.67
180 182 2.558359 ACAACTTTAGCTGCCATTGGTC 59.442 45.455 4.26 0.00 0.00 4.02
181 183 1.453155 ACTTTAGCTGCCATTGGTCG 58.547 50.000 4.26 0.00 0.00 4.79
182 184 0.099436 CTTTAGCTGCCATTGGTCGC 59.901 55.000 4.26 7.35 0.00 5.19
183 185 1.312371 TTTAGCTGCCATTGGTCGCC 61.312 55.000 4.26 0.00 0.00 5.54
186 188 3.499737 CTGCCATTGGTCGCCGTC 61.500 66.667 4.26 0.00 0.00 4.79
187 189 4.321966 TGCCATTGGTCGCCGTCA 62.322 61.111 4.26 0.00 0.00 4.35
188 190 2.824041 GCCATTGGTCGCCGTCAT 60.824 61.111 4.26 0.00 0.00 3.06
189 191 3.101209 CCATTGGTCGCCGTCATG 58.899 61.111 0.00 0.00 0.00 3.07
190 192 2.404789 CATTGGTCGCCGTCATGC 59.595 61.111 0.00 0.00 0.00 4.06
191 193 2.046411 ATTGGTCGCCGTCATGCA 60.046 55.556 0.00 0.00 0.00 3.96
192 194 2.398554 ATTGGTCGCCGTCATGCAC 61.399 57.895 0.00 0.00 0.00 4.57
193 195 3.816367 TTGGTCGCCGTCATGCACA 62.816 57.895 0.00 0.00 0.00 4.57
194 196 2.819595 GGTCGCCGTCATGCACAT 60.820 61.111 0.00 0.00 0.00 3.21
195 197 2.400798 GTCGCCGTCATGCACATG 59.599 61.111 4.18 4.18 40.09 3.21
196 198 2.100031 GTCGCCGTCATGCACATGA 61.100 57.895 9.23 9.23 44.83 3.07
213 215 7.828712 TGCACATGATAGAACAAAAATCATCA 58.171 30.769 0.00 0.00 38.08 3.07
286 288 1.379044 CCAAAGCTGAATCCGCCCT 60.379 57.895 0.00 0.00 0.00 5.19
337 339 1.757699 AGAGAAGGCCTCCGTATCAAC 59.242 52.381 5.23 0.00 42.97 3.18
339 341 0.539986 GAAGGCCTCCGTATCAACCA 59.460 55.000 5.23 0.00 0.00 3.67
343 345 1.369625 GCCTCCGTATCAACCAGTTG 58.630 55.000 4.09 4.09 41.71 3.16
369 371 2.093783 CCACCGTCGAGTTTATTGAAGC 59.906 50.000 0.00 0.00 0.00 3.86
376 378 2.678336 CGAGTTTATTGAAGCACCTCCC 59.322 50.000 0.00 0.00 0.00 4.30
384 386 1.657751 GAAGCACCTCCCGCCAAATC 61.658 60.000 0.00 0.00 0.00 2.17
476 478 3.271250 ATGCGCCCATGAGAAACTT 57.729 47.368 4.18 0.00 0.00 2.66
477 479 1.549203 ATGCGCCCATGAGAAACTTT 58.451 45.000 4.18 0.00 0.00 2.66
502 504 2.489971 TGGCACTAAGGAAAACACTCG 58.510 47.619 0.00 0.00 0.00 4.18
525 527 8.672823 TCGTAAGATAACTAGTAGCATGAAGA 57.327 34.615 0.00 0.00 45.01 2.87
587 589 1.663702 CTGACCGACGGTGTTGTCC 60.664 63.158 27.26 9.39 35.25 4.02
608 610 1.484653 GAGGAGAAAAGGAGAGGAGCC 59.515 57.143 0.00 0.00 0.00 4.70
614 616 3.986116 AAGGAGAGGAGCCGGGGAC 62.986 68.421 2.18 0.00 0.00 4.46
615 617 4.467107 GGAGAGGAGCCGGGGACT 62.467 72.222 2.18 0.00 0.00 3.85
625 627 0.462759 GCCGGGGACTGAAATGAGAG 60.463 60.000 2.18 0.00 36.31 3.20
666 668 5.997129 CCATTTGGTTATTTCAAGGCTTGTT 59.003 36.000 25.39 14.47 0.00 2.83
676 678 9.744468 TTATTTCAAGGCTTGTTCTTTTTCTAC 57.256 29.630 25.39 0.00 0.00 2.59
733 735 6.361768 AAAGAAGTTACCCTCCTAGAACTG 57.638 41.667 0.00 0.00 32.57 3.16
757 1033 1.142870 TGTACCCTGGAGGCATTATGC 59.857 52.381 8.93 8.93 44.08 3.14
759 1035 2.263741 CCCTGGAGGCATTATGCGC 61.264 63.158 11.28 0.00 46.21 6.09
763 1039 0.533531 TGGAGGCATTATGCGCTGAG 60.534 55.000 9.73 0.00 46.21 3.35
784 1060 1.476488 GCAGTCGGTAATGGCCAATTT 59.524 47.619 10.96 2.31 0.00 1.82
785 1061 2.735126 GCAGTCGGTAATGGCCAATTTG 60.735 50.000 10.96 0.00 0.00 2.32
789 1065 2.490115 TCGGTAATGGCCAATTTGTGAC 59.510 45.455 10.96 0.00 0.00 3.67
793 1069 5.244755 GGTAATGGCCAATTTGTGACAATT 58.755 37.500 10.96 0.00 0.00 2.32
833 1110 7.602265 AGTTAATAAAAACGCCTGAAATTGCAT 59.398 29.630 0.00 0.00 34.46 3.96
1134 1609 2.681778 CAGGCCACCCTCGAGACT 60.682 66.667 15.71 0.00 40.33 3.24
1244 1719 1.271840 AACATCCTCCTTGCCGCCTA 61.272 55.000 0.00 0.00 0.00 3.93
1473 1948 0.321653 GTCTCCTGGTCAATGCGGTT 60.322 55.000 0.00 0.00 0.00 4.44
1504 1979 1.205893 ACGAGATGCCTGAAAGAGACC 59.794 52.381 0.00 0.00 34.07 3.85
1608 2083 2.359850 GAGGCGGTGAACATGGCA 60.360 61.111 0.00 0.00 0.00 4.92
1723 2198 6.861065 GAAGCCTTGTATTCGATTTGGATA 57.139 37.500 0.00 0.00 0.00 2.59
2124 2599 3.525199 AGAAGATGCCTATGGAACCTTGT 59.475 43.478 0.00 0.00 0.00 3.16
2162 2637 1.079819 TACTCTCTGCTTGCGCCAC 60.080 57.895 4.18 0.00 34.43 5.01
2389 2864 2.286365 TGCCTTTTACCAAGGGAGTG 57.714 50.000 2.84 0.00 37.88 3.51
2456 2931 5.180680 GGTTACGTAAGGATATGGGCAATTC 59.819 44.000 8.60 0.00 46.39 2.17
2565 3040 8.552296 AGTCAGATATTGGTTTGAGGATAAAGT 58.448 33.333 0.00 0.00 0.00 2.66
2587 3062 6.346896 AGTAGTAACCAGCCTTAATTGCTAC 58.653 40.000 0.00 0.00 39.27 3.58
2615 3090 8.114331 TGAGTTCACATGAGCAATTCTTTTAT 57.886 30.769 0.00 0.00 0.00 1.40
2845 3320 1.069978 TCACATGTTCTGAAGTGCGGA 59.930 47.619 0.00 0.63 32.25 5.54
2849 3324 3.243068 ACATGTTCTGAAGTGCGGAAAAC 60.243 43.478 0.00 0.00 43.24 2.43
2880 3355 3.995199 TGCAAAATTTGTTAATGGCGGA 58.005 36.364 7.60 0.00 0.00 5.54
3185 3668 3.934579 CCAACTGGCCATTTTAATCAAGC 59.065 43.478 5.51 0.00 0.00 4.01
3382 3867 7.168219 TGAACTATCCACTTATTGCTTTGACT 58.832 34.615 0.00 0.00 0.00 3.41
3469 3954 9.263538 CTGTATACTTTGTAAAGTTGTGTACCA 57.736 33.333 14.47 0.00 46.52 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.826524 TGGAGTCCAACACAATAGCAAA 58.173 40.909 10.20 0.00 0.00 3.68
27 28 8.560355 TTTCATCTTGATTATCGAGACCAAAA 57.440 30.769 13.83 11.32 39.56 2.44
55 56 4.368315 CGACCGGAATGTCATGAATAAGA 58.632 43.478 9.46 0.00 34.88 2.10
76 77 2.261172 TATGTCGACTGCCACGTCCG 62.261 60.000 17.92 0.00 0.00 4.79
94 95 5.488341 GCAAGAGTAGATCACTGGGTTTTA 58.512 41.667 0.00 0.00 37.72 1.52
100 102 3.494048 GGATGGCAAGAGTAGATCACTGG 60.494 52.174 0.00 0.00 37.72 4.00
137 139 4.580580 GTGGATCCACAGACAAGAAGTTTT 59.419 41.667 35.21 0.00 45.53 2.43
151 153 2.162408 GCAGCTAAAGTTGTGGATCCAC 59.838 50.000 33.97 33.97 46.33 4.02
172 174 3.101209 CATGACGGCGACCAATGG 58.899 61.111 16.62 0.00 0.00 3.16
173 175 2.397754 TGCATGACGGCGACCAATG 61.398 57.895 16.62 9.65 36.28 2.82
174 176 2.046411 TGCATGACGGCGACCAAT 60.046 55.556 16.62 0.00 36.28 3.16
175 177 3.047280 GTGCATGACGGCGACCAA 61.047 61.111 16.62 0.00 36.28 3.67
176 178 3.604129 ATGTGCATGACGGCGACCA 62.604 57.895 16.62 11.84 36.28 4.02
177 179 2.819595 ATGTGCATGACGGCGACC 60.820 61.111 16.62 5.38 36.28 4.79
178 180 2.100031 TCATGTGCATGACGGCGAC 61.100 57.895 16.62 8.59 42.42 5.19
179 181 2.264166 TCATGTGCATGACGGCGA 59.736 55.556 16.62 0.00 42.42 5.54
186 188 8.642908 ATGATTTTTGTTCTATCATGTGCATG 57.357 30.769 5.86 5.86 37.56 4.06
187 189 8.471609 TGATGATTTTTGTTCTATCATGTGCAT 58.528 29.630 0.00 0.00 38.70 3.96
188 190 7.828712 TGATGATTTTTGTTCTATCATGTGCA 58.171 30.769 0.00 0.00 38.70 4.57
189 191 8.692110 TTGATGATTTTTGTTCTATCATGTGC 57.308 30.769 0.00 0.00 38.70 4.57
191 193 9.362539 GCTTTGATGATTTTTGTTCTATCATGT 57.637 29.630 0.00 0.00 38.70 3.21
192 194 8.814235 GGCTTTGATGATTTTTGTTCTATCATG 58.186 33.333 0.00 0.00 38.70 3.07
193 195 8.533657 TGGCTTTGATGATTTTTGTTCTATCAT 58.466 29.630 0.00 0.00 40.66 2.45
194 196 7.894708 TGGCTTTGATGATTTTTGTTCTATCA 58.105 30.769 0.00 0.00 33.25 2.15
195 197 8.650714 GTTGGCTTTGATGATTTTTGTTCTATC 58.349 33.333 0.00 0.00 0.00 2.08
196 198 8.370182 AGTTGGCTTTGATGATTTTTGTTCTAT 58.630 29.630 0.00 0.00 0.00 1.98
197 199 7.725251 AGTTGGCTTTGATGATTTTTGTTCTA 58.275 30.769 0.00 0.00 0.00 2.10
198 200 6.585416 AGTTGGCTTTGATGATTTTTGTTCT 58.415 32.000 0.00 0.00 0.00 3.01
199 201 6.703165 AGAGTTGGCTTTGATGATTTTTGTTC 59.297 34.615 0.00 0.00 0.00 3.18
200 202 6.585416 AGAGTTGGCTTTGATGATTTTTGTT 58.415 32.000 0.00 0.00 0.00 2.83
254 256 9.561069 GATTCAGCTTTGGTTCCTTTATATCTA 57.439 33.333 0.00 0.00 0.00 1.98
275 277 1.330655 GGAGAGACAGGGCGGATTCA 61.331 60.000 0.00 0.00 0.00 2.57
286 288 0.487325 TGGAGGTGGAAGGAGAGACA 59.513 55.000 0.00 0.00 0.00 3.41
337 339 1.375523 GACGGTGGGCTACAACTGG 60.376 63.158 2.66 0.00 33.46 4.00
339 341 1.874345 CTCGACGGTGGGCTACAACT 61.874 60.000 2.66 0.00 33.46 3.16
343 345 0.527565 TAAACTCGACGGTGGGCTAC 59.472 55.000 0.00 0.00 0.00 3.58
369 371 2.046285 GTGGATTTGGCGGGAGGTG 61.046 63.158 0.00 0.00 0.00 4.00
376 378 2.409870 GCTGGAGGTGGATTTGGCG 61.410 63.158 0.00 0.00 0.00 5.69
476 478 5.830991 AGTGTTTTCCTTAGTGCCATTGTAA 59.169 36.000 0.00 0.00 0.00 2.41
477 479 5.381757 AGTGTTTTCCTTAGTGCCATTGTA 58.618 37.500 0.00 0.00 0.00 2.41
514 516 9.409918 TCCCTATACATAGTATCTTCATGCTAC 57.590 37.037 0.00 0.00 30.76 3.58
548 550 0.684479 GTGAAAATGGGAGGGGAGCC 60.684 60.000 0.00 0.00 0.00 4.70
587 589 1.136110 GCTCCTCTCCTTTTCTCCTCG 59.864 57.143 0.00 0.00 0.00 4.63
608 610 0.462759 GGCTCTCATTTCAGTCCCCG 60.463 60.000 0.00 0.00 0.00 5.73
614 616 2.355132 GCAGACATGGCTCTCATTTCAG 59.645 50.000 0.00 0.00 35.57 3.02
615 617 2.026542 AGCAGACATGGCTCTCATTTCA 60.027 45.455 0.00 0.00 36.81 2.69
625 627 2.260844 TGGCTAATAGCAGACATGGC 57.739 50.000 14.76 0.00 44.75 4.40
709 711 6.239915 CCAGTTCTAGGAGGGTAACTTCTTTT 60.240 42.308 0.00 0.00 43.47 2.27
710 712 5.248705 CCAGTTCTAGGAGGGTAACTTCTTT 59.751 44.000 0.00 0.00 43.47 2.52
711 713 4.778427 CCAGTTCTAGGAGGGTAACTTCTT 59.222 45.833 0.00 0.00 43.47 2.52
712 714 4.354662 CCAGTTCTAGGAGGGTAACTTCT 58.645 47.826 0.00 0.00 43.47 2.85
713 715 3.451540 CCCAGTTCTAGGAGGGTAACTTC 59.548 52.174 0.00 0.00 43.16 3.01
714 716 3.078612 TCCCAGTTCTAGGAGGGTAACTT 59.921 47.826 0.00 0.00 42.12 2.66
715 717 2.658489 TCCCAGTTCTAGGAGGGTAACT 59.342 50.000 0.00 0.00 42.12 2.24
716 718 3.111741 TCCCAGTTCTAGGAGGGTAAC 57.888 52.381 0.00 0.00 42.12 2.50
757 1033 1.141881 ATTACCGACTGCCTCAGCG 59.858 57.895 0.00 0.00 44.31 5.18
759 1035 0.811616 GCCATTACCGACTGCCTCAG 60.812 60.000 0.00 0.00 37.52 3.35
763 1039 0.751643 ATTGGCCATTACCGACTGCC 60.752 55.000 6.09 0.00 42.49 4.85
767 1043 2.490115 TCACAAATTGGCCATTACCGAC 59.510 45.455 6.09 0.00 0.00 4.79
812 1088 9.593134 TTTATATGCAATTTCAGGCGTTTTTAT 57.407 25.926 0.00 0.00 0.00 1.40
910 1187 1.853114 GCCTCACTCACGACTCACGA 61.853 60.000 0.00 0.00 45.77 4.35
912 1189 1.442857 CGCCTCACTCACGACTCAC 60.443 63.158 0.00 0.00 0.00 3.51
913 1190 2.954611 CGCCTCACTCACGACTCA 59.045 61.111 0.00 0.00 0.00 3.41
914 1191 2.505118 GCGCCTCACTCACGACTC 60.505 66.667 0.00 0.00 0.00 3.36
915 1192 2.986413 AGCGCCTCACTCACGACT 60.986 61.111 2.29 0.00 0.00 4.18
916 1193 2.807045 CAGCGCCTCACTCACGAC 60.807 66.667 2.29 0.00 0.00 4.34
1134 1609 1.833630 CAATAGAGCAGGACCAGGTCA 59.166 52.381 21.75 0.00 36.03 4.02
1244 1719 0.325765 GAGAGCTAAGAGGGGTGGGT 60.326 60.000 0.00 0.00 0.00 4.51
1473 1948 0.454600 GCATCTCGTCGAACACCCTA 59.545 55.000 0.00 0.00 0.00 3.53
1504 1979 2.610976 CCATGCAATTCCACACAACAGG 60.611 50.000 0.00 0.00 0.00 4.00
1608 2083 3.011517 ACAGCCCGCAGATCCCTT 61.012 61.111 0.00 0.00 0.00 3.95
1914 2389 2.631062 TGTGAAGGTGATACAGTTCGGT 59.369 45.455 0.00 0.00 0.00 4.69
2162 2637 5.405269 TCTCCAACATCGACATTATTATGCG 59.595 40.000 0.00 0.00 35.03 4.73
2389 2864 4.467198 TTCTCCTCAAATAACTCGGGAC 57.533 45.455 0.00 0.00 0.00 4.46
2456 2931 5.701290 TCAGCATGCTCATATTCAGATTCTG 59.299 40.000 19.68 7.38 34.76 3.02
2565 3040 5.190132 TGGTAGCAATTAAGGCTGGTTACTA 59.810 40.000 13.15 1.06 42.62 1.82
2587 3062 4.398358 AGAATTGCTCATGTGAACTCATGG 59.602 41.667 14.08 8.20 43.52 3.66
2615 3090 7.004086 ACATTTACCAGAACTCCTTCATTGAA 58.996 34.615 0.00 0.00 0.00 2.69
2845 3320 1.649664 TTTGCATGCAACTGCGTTTT 58.350 40.000 31.99 0.00 45.30 2.43
2849 3324 2.032722 ACAAATTTTGCATGCAACTGCG 60.033 40.909 31.99 20.44 45.30 5.18
2880 3355 5.934043 GCAATTTTTCTTGTATCCCAGCTTT 59.066 36.000 0.00 0.00 0.00 3.51
3185 3668 5.181748 CAATCTCTTTCTGGAGGTTACAGG 58.818 45.833 0.00 0.00 34.80 4.00
3218 3701 2.665165 ACCAGGCACAAAAACTCATGA 58.335 42.857 0.00 0.00 0.00 3.07
3382 3867 5.188948 AGCCAACATAGTGACTACAACCATA 59.811 40.000 0.00 0.00 0.00 2.74
3418 3903 7.560262 AGCAGTACCTTAATACTCATACTGACA 59.440 37.037 12.21 0.00 41.21 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.