Multiple sequence alignment - TraesCS4B01G104400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G104400 chr4B 100.000 9805 0 0 1 9805 111036184 111045988 0.000000e+00 18107.0
1 TraesCS4B01G104400 chr4B 82.675 2303 288 65 806 3090 110704155 110706364 0.000000e+00 1940.0
2 TraesCS4B01G104400 chr4B 84.745 1547 168 37 7763 9280 110712349 110713856 0.000000e+00 1487.0
3 TraesCS4B01G104400 chr4B 81.132 265 41 8 3107 3366 110706552 110706812 4.640000e-48 204.0
4 TraesCS4B01G104400 chr4B 81.416 226 30 9 16 235 110702974 110703193 3.640000e-39 174.0
5 TraesCS4B01G104400 chr4B 96.000 50 1 1 4385 4434 110708023 110708071 8.160000e-11 80.5
6 TraesCS4B01G104400 chr4A 96.640 3929 88 21 5615 9511 506167840 506163924 0.000000e+00 6484.0
7 TraesCS4B01G104400 chr4A 97.436 3042 63 6 676 3713 506171659 506168629 0.000000e+00 5171.0
8 TraesCS4B01G104400 chr4A 82.554 2310 284 70 812 3090 506719628 506717407 0.000000e+00 1923.0
9 TraesCS4B01G104400 chr4A 83.671 1580 173 49 7763 9311 506710786 506709261 0.000000e+00 1410.0
10 TraesCS4B01G104400 chr4A 95.985 797 26 4 3794 4585 506168634 506167839 0.000000e+00 1290.0
11 TraesCS4B01G104400 chr4A 95.175 684 15 9 1 671 506172628 506171950 0.000000e+00 1064.0
12 TraesCS4B01G104400 chr4A 82.743 226 26 10 16 235 506720825 506720607 1.300000e-43 189.0
13 TraesCS4B01G104400 chr4A 98.305 59 0 1 5721 5778 506167840 506167782 1.740000e-17 102.0
14 TraesCS4B01G104400 chr4A 94.000 50 2 1 4385 4434 506715774 506715726 3.800000e-09 75.0
15 TraesCS4B01G104400 chr4D 97.107 3629 70 20 1 3611 79699925 79703536 0.000000e+00 6087.0
16 TraesCS4B01G104400 chr4D 95.643 2915 66 22 6868 9740 79706296 79709191 0.000000e+00 4623.0
17 TraesCS4B01G104400 chr4D 96.708 1519 41 4 3840 5353 79703572 79705086 0.000000e+00 2519.0
18 TraesCS4B01G104400 chr4D 82.760 2297 285 66 812 3090 79212931 79215134 0.000000e+00 1945.0
19 TraesCS4B01G104400 chr4D 95.743 1198 40 9 5385 6576 79705082 79706274 0.000000e+00 1919.0
20 TraesCS4B01G104400 chr4D 84.094 1578 172 46 7763 9311 79221162 79222689 0.000000e+00 1450.0
21 TraesCS4B01G104400 chr4D 81.343 268 41 8 3107 3369 79215324 79215587 9.980000e-50 209.0
22 TraesCS4B01G104400 chr4D 97.030 101 2 1 5679 5778 79705268 79705368 1.690000e-37 169.0
23 TraesCS4B01G104400 chr4D 85.256 156 13 9 16 161 79211739 79211894 1.710000e-32 152.0
24 TraesCS4B01G104400 chr4D 96.000 50 1 1 4385 4434 79216804 79216852 8.160000e-11 80.5
25 TraesCS4B01G104400 chr4D 100.000 30 0 0 3909 3938 79703558 79703587 1.000000e-03 56.5
26 TraesCS4B01G104400 chr5D 88.235 68 8 0 9560 9627 82083934 82084001 2.270000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G104400 chr4B 111036184 111045988 9804 False 18107.000 18107 100.000000 1 9805 1 chr4B.!!$F2 9804
1 TraesCS4B01G104400 chr4B 110712349 110713856 1507 False 1487.000 1487 84.745000 7763 9280 1 chr4B.!!$F1 1517
2 TraesCS4B01G104400 chr4B 110702974 110708071 5097 False 599.625 1940 85.305750 16 4434 4 chr4B.!!$F3 4418
3 TraesCS4B01G104400 chr4A 506163924 506172628 8704 True 2822.200 6484 96.708200 1 9511 5 chr4A.!!$R2 9510
4 TraesCS4B01G104400 chr4A 506709261 506710786 1525 True 1410.000 1410 83.671000 7763 9311 1 chr4A.!!$R1 1548
5 TraesCS4B01G104400 chr4A 506715726 506720825 5099 True 729.000 1923 86.432333 16 4434 3 chr4A.!!$R3 4418
6 TraesCS4B01G104400 chr4D 79699925 79709191 9266 False 2562.250 6087 97.038500 1 9740 6 chr4D.!!$F3 9739
7 TraesCS4B01G104400 chr4D 79221162 79222689 1527 False 1450.000 1450 84.094000 7763 9311 1 chr4D.!!$F1 1548
8 TraesCS4B01G104400 chr4D 79211739 79216852 5113 False 596.625 1945 86.339750 16 4434 4 chr4D.!!$F2 4418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 644 0.042731 TCTAGTCTGGGAGTTGGGGG 59.957 60.000 0.00 0.00 0.00 5.40 F
776 1381 1.069978 GTTGATTTTGGGTGGTGTGGG 59.930 52.381 0.00 0.00 0.00 4.61 F
1869 2492 1.304254 TGCAACAGCAGCGTCTTTTA 58.696 45.000 0.00 0.00 33.59 1.52 F
2690 3336 0.381089 CAGTAGAGGTCTTACCGCGG 59.619 60.000 26.86 26.86 44.90 6.46 F
3670 4511 0.109532 TTGGTCTCAACAATCCCGCA 59.890 50.000 0.00 0.00 0.00 5.69 F
4612 6121 0.333312 TTTGGCCCATGAATACCCGT 59.667 50.000 0.00 0.00 0.00 5.28 F
6307 7828 0.391130 TCCCTCCGTCTCAAAATGCG 60.391 55.000 0.00 0.00 0.00 4.73 F
7449 9002 0.560688 ACCAACCAAACACCTCCCAT 59.439 50.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 2044 2.272230 ATCCATCTGCTGCTGCTGCT 62.272 55.000 27.67 9.19 40.48 4.24 R
2621 3267 2.808543 AGATCAAACCAGAAACACGAGC 59.191 45.455 0.00 0.00 0.00 5.03 R
3486 4327 0.394488 GGCTCCTTTACAGGGAAGGC 60.394 60.000 0.00 0.00 42.73 4.35 R
4612 6121 0.036732 ACCTTCGAAGCTCAATGCCA 59.963 50.000 19.99 0.00 44.23 4.92 R
5255 6764 0.401356 TGGCAACTGGATGCTTCTCA 59.599 50.000 7.48 0.00 45.68 3.27 R
6570 8108 0.251297 CTTTCATGCCCAGGTCACCA 60.251 55.000 0.00 0.00 0.00 4.17 R
7663 9218 0.112995 AAATCAGCAGGAACCAGGCA 59.887 50.000 9.43 0.00 0.00 4.75 R
8835 10398 1.676635 GTGAGGGCAGCTGCATCAA 60.677 57.895 34.17 21.58 44.36 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 5.880901 AGGACAAAGCCTCAGAATTTTCTA 58.119 37.500 0.00 0.00 35.73 2.10
126 138 3.078097 TCTCTCTCTCCTGTTTCGTCTG 58.922 50.000 0.00 0.00 0.00 3.51
206 224 4.700365 CGTCGCTCGCACACAGGA 62.700 66.667 0.00 0.00 0.00 3.86
265 284 1.807814 ATCCCGCTGTTATCTCCCTT 58.192 50.000 0.00 0.00 0.00 3.95
457 476 2.325393 ATTCGGGGCGGACTGGATTC 62.325 60.000 0.00 0.00 0.00 2.52
589 617 3.047877 CGTGTTTGGGCTCGGGAC 61.048 66.667 0.00 0.00 0.00 4.46
604 632 1.448922 GGGACGCTGCGATCTAGTCT 61.449 60.000 30.47 2.56 32.86 3.24
616 644 0.042731 TCTAGTCTGGGAGTTGGGGG 59.957 60.000 0.00 0.00 0.00 5.40
633 661 1.751351 GGGGTTGCTTAATTCTGCTCC 59.249 52.381 4.59 6.53 0.00 4.70
776 1381 1.069978 GTTGATTTTGGGTGGTGTGGG 59.930 52.381 0.00 0.00 0.00 4.61
808 1413 5.658634 TCAGTAGATTTGTGCTGGAGATACT 59.341 40.000 0.00 0.00 0.00 2.12
1428 2039 6.462500 CAATCACCTAGGTTCAGATATCCTG 58.538 44.000 13.15 3.95 44.27 3.86
1429 2040 3.898123 TCACCTAGGTTCAGATATCCTGC 59.102 47.826 13.15 0.00 42.62 4.85
1430 2041 3.643320 CACCTAGGTTCAGATATCCTGCA 59.357 47.826 13.15 0.00 42.62 4.41
1431 2042 3.900601 ACCTAGGTTCAGATATCCTGCAG 59.099 47.826 9.21 6.78 42.62 4.41
1432 2043 2.926778 AGGTTCAGATATCCTGCAGC 57.073 50.000 8.66 0.00 42.62 5.25
1433 2044 2.121948 AGGTTCAGATATCCTGCAGCA 58.878 47.619 8.66 0.00 42.62 4.41
1658 2278 1.731433 GCCCAGATGATGCGCAATGT 61.731 55.000 17.11 0.00 32.68 2.71
1869 2492 1.304254 TGCAACAGCAGCGTCTTTTA 58.696 45.000 0.00 0.00 33.59 1.52
2365 3010 2.413453 GTCTTGCTCCGACTGCTAAAAG 59.587 50.000 0.00 0.00 0.00 2.27
2621 3267 2.775911 TTGTGCATCCTCCTCTCTTG 57.224 50.000 0.00 0.00 0.00 3.02
2647 3293 5.995282 TCGTGTTTCTGGTTTGATCTTATGT 59.005 36.000 0.00 0.00 0.00 2.29
2648 3294 6.485313 TCGTGTTTCTGGTTTGATCTTATGTT 59.515 34.615 0.00 0.00 0.00 2.71
2649 3295 6.797033 CGTGTTTCTGGTTTGATCTTATGTTC 59.203 38.462 0.00 0.00 0.00 3.18
2690 3336 0.381089 CAGTAGAGGTCTTACCGCGG 59.619 60.000 26.86 26.86 44.90 6.46
2921 3567 5.815740 TGTACTTTGTTCTTCTTCCTGTCAC 59.184 40.000 0.00 0.00 0.00 3.67
3002 3652 7.391554 ACATATATTGCACAATCCTGTACCATC 59.608 37.037 0.00 0.00 33.22 3.51
3009 3659 4.080919 CACAATCCTGTACCATCTCCTTCA 60.081 45.833 0.00 0.00 33.22 3.02
3090 3740 7.068348 GCGGAGATCAATAATACCTCAGGTATA 59.932 40.741 17.28 6.18 46.88 1.47
3624 4465 5.530176 AACAAGATAATGTGGGTAGGGTT 57.470 39.130 0.00 0.00 32.81 4.11
3670 4511 0.109532 TTGGTCTCAACAATCCCGCA 59.890 50.000 0.00 0.00 0.00 5.69
3689 4530 0.957395 AGCATTGCTTGTCCCTGACG 60.957 55.000 5.03 0.00 33.89 4.35
3710 4551 2.001076 TGAAGAGTGTCTCAGAGGCA 57.999 50.000 0.00 0.00 32.06 4.75
3711 4552 2.533916 TGAAGAGTGTCTCAGAGGCAT 58.466 47.619 8.28 0.00 29.73 4.40
3712 4553 3.701664 TGAAGAGTGTCTCAGAGGCATA 58.298 45.455 8.28 0.00 29.73 3.14
3713 4554 3.698539 TGAAGAGTGTCTCAGAGGCATAG 59.301 47.826 8.28 0.00 29.73 2.23
3714 4555 3.660970 AGAGTGTCTCAGAGGCATAGA 57.339 47.619 8.28 0.00 29.73 1.98
3715 4556 3.554934 AGAGTGTCTCAGAGGCATAGAG 58.445 50.000 8.28 0.00 29.73 2.43
3716 4557 2.622942 GAGTGTCTCAGAGGCATAGAGG 59.377 54.545 8.28 0.00 29.73 3.69
3717 4558 2.243478 AGTGTCTCAGAGGCATAGAGGA 59.757 50.000 8.28 0.00 29.73 3.71
3718 4559 2.360801 GTGTCTCAGAGGCATAGAGGAC 59.639 54.545 8.28 0.00 29.73 3.85
3719 4560 2.243478 TGTCTCAGAGGCATAGAGGACT 59.757 50.000 0.00 0.00 0.00 3.85
3720 4561 3.295973 GTCTCAGAGGCATAGAGGACTT 58.704 50.000 0.00 0.00 0.00 3.01
3721 4562 3.317993 GTCTCAGAGGCATAGAGGACTTC 59.682 52.174 0.00 0.00 0.00 3.01
3722 4563 2.627699 CTCAGAGGCATAGAGGACTTCC 59.372 54.545 0.00 0.00 0.00 3.46
3723 4564 2.023984 TCAGAGGCATAGAGGACTTCCA 60.024 50.000 0.00 0.00 38.89 3.53
3724 4565 2.971330 CAGAGGCATAGAGGACTTCCAT 59.029 50.000 0.00 0.00 38.89 3.41
3725 4566 3.390639 CAGAGGCATAGAGGACTTCCATT 59.609 47.826 0.00 0.00 38.89 3.16
3726 4567 4.043596 AGAGGCATAGAGGACTTCCATTT 58.956 43.478 0.00 0.00 38.89 2.32
3727 4568 5.070981 CAGAGGCATAGAGGACTTCCATTTA 59.929 44.000 0.00 0.00 38.89 1.40
3728 4569 5.848921 AGAGGCATAGAGGACTTCCATTTAT 59.151 40.000 0.00 0.00 38.89 1.40
3729 4570 6.331307 AGAGGCATAGAGGACTTCCATTTATT 59.669 38.462 0.00 0.00 38.89 1.40
3730 4571 6.915786 AGGCATAGAGGACTTCCATTTATTT 58.084 36.000 0.00 0.00 38.89 1.40
3731 4572 7.001073 AGGCATAGAGGACTTCCATTTATTTC 58.999 38.462 0.00 0.00 38.89 2.17
3732 4573 6.772716 GGCATAGAGGACTTCCATTTATTTCA 59.227 38.462 0.00 0.00 38.89 2.69
3733 4574 7.449704 GGCATAGAGGACTTCCATTTATTTCAT 59.550 37.037 0.00 0.00 38.89 2.57
3734 4575 8.854117 GCATAGAGGACTTCCATTTATTTCATT 58.146 33.333 0.00 0.00 38.89 2.57
3736 4577 7.105241 AGAGGACTTCCATTTATTTCATTGC 57.895 36.000 0.00 0.00 38.89 3.56
3737 4578 6.894103 AGAGGACTTCCATTTATTTCATTGCT 59.106 34.615 0.00 0.00 38.89 3.91
3738 4579 7.398332 AGAGGACTTCCATTTATTTCATTGCTT 59.602 33.333 0.00 0.00 38.89 3.91
3739 4580 8.593945 AGGACTTCCATTTATTTCATTGCTTA 57.406 30.769 0.00 0.00 38.89 3.09
3740 4581 9.034800 AGGACTTCCATTTATTTCATTGCTTAA 57.965 29.630 0.00 0.00 38.89 1.85
3741 4582 9.822185 GGACTTCCATTTATTTCATTGCTTAAT 57.178 29.630 0.00 0.00 35.64 1.40
3754 4595 9.705290 TTTCATTGCTTAATTTTCCCTCTTAAC 57.295 29.630 0.00 0.00 0.00 2.01
3755 4596 8.650143 TCATTGCTTAATTTTCCCTCTTAACT 57.350 30.769 0.00 0.00 0.00 2.24
3756 4597 9.088987 TCATTGCTTAATTTTCCCTCTTAACTT 57.911 29.630 0.00 0.00 0.00 2.66
3760 4601 9.528489 TGCTTAATTTTCCCTCTTAACTTATGT 57.472 29.630 0.00 0.00 0.00 2.29
3769 4610 9.895138 TTCCCTCTTAACTTATGTATACCAAAC 57.105 33.333 0.00 0.00 0.00 2.93
3770 4611 9.049050 TCCCTCTTAACTTATGTATACCAAACA 57.951 33.333 0.00 0.00 0.00 2.83
3771 4612 9.847224 CCCTCTTAACTTATGTATACCAAACAT 57.153 33.333 0.00 0.00 40.57 2.71
3778 4619 9.826574 AACTTATGTATACCAAACATACGTGAT 57.173 29.630 0.00 0.00 39.80 3.06
3779 4620 9.826574 ACTTATGTATACCAAACATACGTGATT 57.173 29.630 0.00 0.00 39.46 2.57
3781 4622 7.724305 ATGTATACCAAACATACGTGATTCC 57.276 36.000 0.00 0.00 35.82 3.01
3782 4623 6.880484 TGTATACCAAACATACGTGATTCCT 58.120 36.000 0.00 0.00 32.55 3.36
3783 4624 8.009622 TGTATACCAAACATACGTGATTCCTA 57.990 34.615 0.00 0.00 32.55 2.94
3784 4625 8.476447 TGTATACCAAACATACGTGATTCCTAA 58.524 33.333 0.00 0.00 32.55 2.69
3785 4626 9.485206 GTATACCAAACATACGTGATTCCTAAT 57.515 33.333 0.00 0.00 0.00 1.73
3786 4627 8.974060 ATACCAAACATACGTGATTCCTAATT 57.026 30.769 0.00 0.00 0.00 1.40
3787 4628 7.083875 ACCAAACATACGTGATTCCTAATTG 57.916 36.000 0.00 0.00 0.00 2.32
3788 4629 5.971202 CCAAACATACGTGATTCCTAATTGC 59.029 40.000 0.00 0.00 0.00 3.56
3789 4630 6.183360 CCAAACATACGTGATTCCTAATTGCT 60.183 38.462 0.00 0.00 0.00 3.91
3790 4631 6.604735 AACATACGTGATTCCTAATTGCTC 57.395 37.500 0.00 0.00 0.00 4.26
3791 4632 5.670485 ACATACGTGATTCCTAATTGCTCA 58.330 37.500 0.00 0.00 0.00 4.26
3792 4633 6.291377 ACATACGTGATTCCTAATTGCTCAT 58.709 36.000 0.00 0.00 0.00 2.90
3793 4634 6.203530 ACATACGTGATTCCTAATTGCTCATG 59.796 38.462 0.00 0.00 0.00 3.07
3794 4635 3.879295 ACGTGATTCCTAATTGCTCATGG 59.121 43.478 0.00 0.00 0.00 3.66
3795 4636 3.304257 CGTGATTCCTAATTGCTCATGGC 60.304 47.826 0.00 0.00 42.22 4.40
3803 4644 6.793478 TCCTAATTGCTCATGGCCTATTAAT 58.207 36.000 3.32 0.00 40.92 1.40
3889 4732 1.066787 GTGGTAACTCCTCTGAGCCAC 60.067 57.143 12.14 12.14 42.74 5.01
4046 4890 4.468868 GGTCCTAAGGGCTTACAGAAGTTA 59.531 45.833 0.00 0.00 34.90 2.24
4098 4963 3.965379 TGACTAATTAAGTGTGCCCGA 57.035 42.857 0.00 0.00 39.07 5.14
4139 5004 5.346181 AGGAGTTAGTAATTCACCTCAGC 57.654 43.478 7.60 0.00 0.00 4.26
4178 5074 4.281688 CCATGATCCAAGTGTTTGAAAGGT 59.718 41.667 0.00 0.00 36.36 3.50
4239 5636 6.542370 GTGCTACAATAACCCTTATCATGTGT 59.458 38.462 0.00 0.00 0.00 3.72
4450 5959 2.900671 GATCTCAAGCACCTGGGCCC 62.901 65.000 17.59 17.59 0.00 5.80
4598 6107 3.326747 ACTGAATAGTCTGTCGTTTGGC 58.673 45.455 0.00 0.00 30.69 4.52
4612 6121 0.333312 TTTGGCCCATGAATACCCGT 59.667 50.000 0.00 0.00 0.00 5.28
4721 6230 5.799213 AGCTCTTAGGGTAATACATGCATC 58.201 41.667 0.00 0.00 0.00 3.91
4792 6301 3.306703 GTGACGTTCCGTTAAGTGACAAA 59.693 43.478 0.00 0.00 41.37 2.83
4870 6379 3.806949 TTTCATAAGCACCACCCTTCT 57.193 42.857 0.00 0.00 0.00 2.85
5022 6531 8.308207 TGTGCATTTATTCCCTAAAAAGGTAAC 58.692 33.333 0.00 0.00 33.15 2.50
5030 6539 7.728847 TTCCCTAAAAAGGTAACGTCTAAAC 57.271 36.000 0.00 0.00 46.39 2.01
5070 6579 2.048127 GGCTGAACCTCGAACGCT 60.048 61.111 0.00 0.00 34.51 5.07
5110 6619 1.002430 CTCAAGCTAGCCAACTGGTCA 59.998 52.381 12.13 0.00 37.57 4.02
5255 6764 5.357032 GGATTGTTGGAATGTAGAACGGATT 59.643 40.000 0.00 0.00 0.00 3.01
5261 6770 5.419542 TGGAATGTAGAACGGATTGAGAAG 58.580 41.667 0.00 0.00 0.00 2.85
5279 6788 1.927487 AGCATCCAGTTGCCATGAAA 58.073 45.000 0.00 0.00 43.83 2.69
5356 6867 9.502091 TGGATATTATGCTGTATTACTGAAACC 57.498 33.333 5.02 0.00 0.00 3.27
5357 6868 8.656849 GGATATTATGCTGTATTACTGAAACCG 58.343 37.037 5.02 0.00 0.00 4.44
5358 6869 6.861065 ATTATGCTGTATTACTGAAACCGG 57.139 37.500 0.00 0.00 0.00 5.28
5359 6870 3.965379 TGCTGTATTACTGAAACCGGA 57.035 42.857 9.46 0.00 0.00 5.14
5360 6871 3.592059 TGCTGTATTACTGAAACCGGAC 58.408 45.455 9.46 0.00 0.00 4.79
5361 6872 3.259876 TGCTGTATTACTGAAACCGGACT 59.740 43.478 9.46 0.00 0.00 3.85
5362 6873 3.617263 GCTGTATTACTGAAACCGGACTG 59.383 47.826 9.46 5.94 0.00 3.51
5363 6874 4.619863 GCTGTATTACTGAAACCGGACTGA 60.620 45.833 9.46 0.00 0.00 3.41
5364 6875 5.661458 CTGTATTACTGAAACCGGACTGAT 58.339 41.667 9.46 0.00 0.00 2.90
5365 6876 6.682113 GCTGTATTACTGAAACCGGACTGATA 60.682 42.308 9.46 0.00 0.00 2.15
5366 6877 6.802608 TGTATTACTGAAACCGGACTGATAG 58.197 40.000 9.46 0.71 0.00 2.08
5367 6878 5.934402 ATTACTGAAACCGGACTGATAGT 57.066 39.130 9.46 7.25 0.00 2.12
5368 6879 5.733620 TTACTGAAACCGGACTGATAGTT 57.266 39.130 9.46 0.00 0.00 2.24
5369 6880 4.618920 ACTGAAACCGGACTGATAGTTT 57.381 40.909 9.46 0.00 0.00 2.66
5370 6881 5.733620 ACTGAAACCGGACTGATAGTTTA 57.266 39.130 9.46 0.00 0.00 2.01
5371 6882 5.721232 ACTGAAACCGGACTGATAGTTTAG 58.279 41.667 9.46 0.00 0.00 1.85
5372 6883 4.501071 TGAAACCGGACTGATAGTTTAGC 58.499 43.478 9.46 0.00 0.00 3.09
5373 6884 3.538634 AACCGGACTGATAGTTTAGCC 57.461 47.619 9.46 0.00 0.00 3.93
5374 6885 2.463752 ACCGGACTGATAGTTTAGCCA 58.536 47.619 9.46 0.00 0.00 4.75
5375 6886 2.431057 ACCGGACTGATAGTTTAGCCAG 59.569 50.000 9.46 0.00 0.00 4.85
5376 6887 2.693591 CCGGACTGATAGTTTAGCCAGA 59.306 50.000 0.00 0.00 0.00 3.86
5377 6888 3.132289 CCGGACTGATAGTTTAGCCAGAA 59.868 47.826 0.00 0.00 0.00 3.02
5378 6889 4.382685 CCGGACTGATAGTTTAGCCAGAAA 60.383 45.833 0.00 0.00 0.00 2.52
5379 6890 5.175859 CGGACTGATAGTTTAGCCAGAAAA 58.824 41.667 0.00 0.00 0.00 2.29
5380 6891 5.063564 CGGACTGATAGTTTAGCCAGAAAAC 59.936 44.000 0.00 0.00 37.14 2.43
5381 6892 5.354513 GGACTGATAGTTTAGCCAGAAAACC 59.645 44.000 0.00 0.00 37.51 3.27
5382 6893 4.935808 ACTGATAGTTTAGCCAGAAAACCG 59.064 41.667 0.00 0.00 37.51 4.44
5383 6894 4.258543 TGATAGTTTAGCCAGAAAACCGG 58.741 43.478 0.00 0.00 37.51 5.28
5384 6895 2.943036 AGTTTAGCCAGAAAACCGGA 57.057 45.000 9.46 0.00 37.51 5.14
5385 6896 2.501261 AGTTTAGCCAGAAAACCGGAC 58.499 47.619 9.46 0.00 37.51 4.79
5386 6897 2.105993 AGTTTAGCCAGAAAACCGGACT 59.894 45.455 9.46 0.00 37.51 3.85
5387 6898 2.178912 TTAGCCAGAAAACCGGACTG 57.821 50.000 9.46 11.77 0.00 3.51
5388 6899 1.344065 TAGCCAGAAAACCGGACTGA 58.656 50.000 9.46 0.00 34.07 3.41
5435 6946 7.324935 TGTTCTAGAAGCATAAAATGTCCGTA 58.675 34.615 5.12 0.00 0.00 4.02
5460 6971 5.120208 AGCAAATATAACCTTATACGCGCAG 59.880 40.000 5.73 2.42 0.00 5.18
5461 6972 5.670341 GCAAATATAACCTTATACGCGCAGG 60.670 44.000 5.73 8.93 0.00 4.85
5482 6993 0.538287 GCTTGCCCTGTCTTGACCTT 60.538 55.000 0.00 0.00 0.00 3.50
5484 6995 2.427506 CTTGCCCTGTCTTGACCTTAC 58.572 52.381 0.00 0.00 0.00 2.34
5494 7005 4.101898 TGTCTTGACCTTACTTGCTTGGTA 59.898 41.667 0.00 0.00 32.30 3.25
5506 7017 4.829492 ACTTGCTTGGTATCTTTTGCTTCT 59.171 37.500 0.00 0.00 0.00 2.85
5507 7018 4.771590 TGCTTGGTATCTTTTGCTTCTG 57.228 40.909 0.00 0.00 0.00 3.02
5580 7091 4.082949 GGTAGCACCTAAACCACATTGTTC 60.083 45.833 0.00 0.00 34.73 3.18
5585 7096 5.564063 GCACCTAAACCACATTGTTCTTACC 60.564 44.000 0.00 0.00 0.00 2.85
5588 7099 6.489022 ACCTAAACCACATTGTTCTTACCTTC 59.511 38.462 0.00 0.00 0.00 3.46
5608 7119 2.951642 TCCTTGCTGACTGTTTCTTTGG 59.048 45.455 0.00 0.00 0.00 3.28
5642 7154 6.993079 ACCTTTTACCAACTCCATCAATTTC 58.007 36.000 0.00 0.00 0.00 2.17
5667 7179 6.364165 CCATTGTACTTTTCAAGTTCATGCTG 59.636 38.462 0.00 0.00 42.81 4.41
5858 7378 1.989706 TGGAGGTGCCTTTGGTAAAC 58.010 50.000 0.00 0.00 37.63 2.01
5909 7429 3.851098 CTGCCTTCAGGTACACTCTAAC 58.149 50.000 0.00 0.00 36.68 2.34
5991 7511 7.201767 CCTTTTTCTGACCATAAGCTCCTATTG 60.202 40.741 0.00 0.00 0.00 1.90
6264 7785 3.998341 TCCTTGCGGTACATTTTCTACAC 59.002 43.478 0.00 0.00 0.00 2.90
6307 7828 0.391130 TCCCTCCGTCTCAAAATGCG 60.391 55.000 0.00 0.00 0.00 4.73
6325 7846 6.741992 AATGCGAGATCATTTTTGACACTA 57.258 33.333 0.00 0.00 33.18 2.74
6430 7967 8.827177 AGAAATCACTGTAACTATCGTTTCAA 57.173 30.769 0.00 0.00 31.37 2.69
6570 8108 4.282449 GCCTGGGGTATAAGTGTTTGTTTT 59.718 41.667 0.00 0.00 0.00 2.43
6591 8129 1.457346 GTGACCTGGGCATGAAAGAG 58.543 55.000 5.03 0.00 0.00 2.85
6626 8164 0.684153 AACATGGCGGGCTTTATGCT 60.684 50.000 2.38 0.00 42.39 3.79
6748 8286 8.196378 AGATGTTAGGAAGTTAAGAGTCTTGT 57.804 34.615 15.90 0.00 0.00 3.16
7023 8575 1.109920 TCGAGTGCTCTATCCCCTGC 61.110 60.000 0.00 0.00 0.00 4.85
7039 8591 2.559705 CCCTGCCTTTGGACCCTTTAAT 60.560 50.000 0.00 0.00 0.00 1.40
7203 8756 3.650950 GGTGGGCCAGCCTCTTGA 61.651 66.667 25.03 0.00 36.10 3.02
7205 8758 1.635817 GGTGGGCCAGCCTCTTGATA 61.636 60.000 25.03 0.00 36.10 2.15
7221 8774 1.133482 TGATAGCCGGATGGTCTCTCA 60.133 52.381 5.05 0.00 37.67 3.27
7250 8803 1.206610 TCTTGATGAGTGCTGGAGCTC 59.793 52.381 4.71 4.71 42.66 4.09
7277 8830 1.978617 CAAAGGCAGGCCCGACAAT 60.979 57.895 6.70 0.00 39.21 2.71
7293 8846 3.434641 CGACAATGACAGAGCTTTGATGT 59.565 43.478 11.85 9.81 0.00 3.06
7352 8905 2.290896 CCCATCTGCCTTTGTTAGGTCA 60.291 50.000 0.00 0.00 46.61 4.02
7449 9002 0.560688 ACCAACCAAACACCTCCCAT 59.439 50.000 0.00 0.00 0.00 4.00
7597 9152 5.143376 TCCGGTAGGAAACAACTTCTAAG 57.857 43.478 0.00 0.00 45.12 2.18
7665 9220 1.952263 GGAACTGAGTTGCCTGTGC 59.048 57.895 0.90 0.00 38.26 4.57
7666 9221 1.518903 GGAACTGAGTTGCCTGTGCC 61.519 60.000 0.90 0.00 36.33 5.01
7686 9241 3.370527 GCCTGGTTCCTGCTGATTTAGTA 60.371 47.826 0.00 0.00 0.00 1.82
7851 9406 4.094476 TCATAACTTTCCTCGGAGGAGTT 58.906 43.478 25.77 25.77 46.73 3.01
8222 9777 3.117016 AGGTGCCCACATCATCCAATAAT 60.117 43.478 0.40 0.00 0.00 1.28
8986 10558 1.024046 TCGCGGCTGTATGTTGCAAT 61.024 50.000 6.13 0.00 0.00 3.56
9317 10907 7.730364 AAAGTATCAAGAATGTTTCTGTCGT 57.270 32.000 0.00 0.00 40.59 4.34
9337 10927 3.059597 CGTGTAAAAGGTGCACTCTTCTG 60.060 47.826 17.98 2.81 40.44 3.02
9343 10933 0.603975 GGTGCACTCTTCTGTCCCAC 60.604 60.000 17.98 0.00 0.00 4.61
9428 11018 1.448013 GGTAGCTCGCTGAACACCC 60.448 63.158 0.85 0.00 0.00 4.61
9478 11068 1.463444 GTTTGACAGCACGGGATGTAC 59.537 52.381 9.37 0.00 45.14 2.90
9483 11073 1.337823 ACAGCACGGGATGTACAAGTC 60.338 52.381 6.86 0.00 42.91 3.01
9501 11091 9.788960 GTACAAGTCTTTTTCTTCTTGAATTGT 57.211 29.630 10.88 10.88 44.34 2.71
9545 11135 0.768622 ATCCTTCCCAAACGTCCACA 59.231 50.000 0.00 0.00 0.00 4.17
9560 11150 1.707989 TCCACACTGGGGCAAATCTAA 59.292 47.619 0.00 0.00 38.32 2.10
9582 11179 3.530910 AAACGTCCGGGCTGACCAG 62.531 63.158 3.66 0.00 40.22 4.00
9596 11193 0.178990 GACCAGCAATCCCCATACCC 60.179 60.000 0.00 0.00 0.00 3.69
9597 11194 0.923729 ACCAGCAATCCCCATACCCA 60.924 55.000 0.00 0.00 0.00 4.51
9598 11195 0.178981 CCAGCAATCCCCATACCCAG 60.179 60.000 0.00 0.00 0.00 4.45
9605 11223 4.398319 CAATCCCCATACCCAGTTCATAC 58.602 47.826 0.00 0.00 0.00 2.39
9608 11226 2.967201 CCCCATACCCAGTTCATACGTA 59.033 50.000 0.00 0.00 0.00 3.57
9624 11242 0.976073 CGTAGGGCGGATATGGGGAT 60.976 60.000 0.00 0.00 36.85 3.85
9626 11244 1.271840 TAGGGCGGATATGGGGATGC 61.272 60.000 0.00 0.00 0.00 3.91
9627 11245 2.606587 GGGCGGATATGGGGATGCT 61.607 63.158 0.00 0.00 0.00 3.79
9664 11282 0.037046 GGCCCACTCCAATTTGCTTG 60.037 55.000 0.00 0.00 34.42 4.01
9669 11287 3.321682 CCCACTCCAATTTGCTTGAAGAA 59.678 43.478 0.00 0.00 36.97 2.52
9670 11288 4.202243 CCCACTCCAATTTGCTTGAAGAAA 60.202 41.667 0.00 0.00 36.97 2.52
9704 11323 4.154918 CCTAACCTGCATGTTTCTCTTGTC 59.845 45.833 12.74 0.00 0.00 3.18
9707 11326 3.817647 ACCTGCATGTTTCTCTTGTCTTC 59.182 43.478 0.00 0.00 0.00 2.87
9712 11331 5.824624 TGCATGTTTCTCTTGTCTTCTCTTT 59.175 36.000 0.00 0.00 0.00 2.52
9726 11345 3.667497 TCTCTTTCTCGTCTGCACAAT 57.333 42.857 0.00 0.00 0.00 2.71
9733 11352 0.673333 TCGTCTGCACAATCGCCATT 60.673 50.000 0.00 0.00 0.00 3.16
9743 11362 1.386412 CAATCGCCATTGTTGTTTCGC 59.614 47.619 0.00 0.00 35.53 4.70
9744 11363 0.109319 ATCGCCATTGTTGTTTCGCC 60.109 50.000 0.00 0.00 0.00 5.54
9745 11364 2.080062 CGCCATTGTTGTTTCGCCG 61.080 57.895 0.00 0.00 0.00 6.46
9746 11365 1.007849 GCCATTGTTGTTTCGCCGT 60.008 52.632 0.00 0.00 0.00 5.68
9747 11366 1.001745 GCCATTGTTGTTTCGCCGTC 61.002 55.000 0.00 0.00 0.00 4.79
9748 11367 0.724453 CCATTGTTGTTTCGCCGTCG 60.724 55.000 0.00 0.00 0.00 5.12
9749 11368 0.041663 CATTGTTGTTTCGCCGTCGT 60.042 50.000 0.00 0.00 36.96 4.34
9750 11369 0.658897 ATTGTTGTTTCGCCGTCGTT 59.341 45.000 0.00 0.00 36.96 3.85
9751 11370 0.247735 TTGTTGTTTCGCCGTCGTTG 60.248 50.000 0.00 0.00 36.96 4.10
9752 11371 1.349282 GTTGTTTCGCCGTCGTTGT 59.651 52.632 0.00 0.00 36.96 3.32
9753 11372 0.247775 GTTGTTTCGCCGTCGTTGTT 60.248 50.000 0.00 0.00 36.96 2.83
9754 11373 0.247735 TTGTTTCGCCGTCGTTGTTG 60.248 50.000 0.00 0.00 36.96 3.33
9755 11374 1.368374 GTTTCGCCGTCGTTGTTGG 60.368 57.895 0.00 0.00 36.96 3.77
9756 11375 1.814586 TTTCGCCGTCGTTGTTGGT 60.815 52.632 0.00 0.00 36.96 3.67
9757 11376 1.764180 TTTCGCCGTCGTTGTTGGTC 61.764 55.000 0.00 0.00 36.96 4.02
9758 11377 3.708734 CGCCGTCGTTGTTGGTCC 61.709 66.667 0.00 0.00 0.00 4.46
9759 11378 3.708734 GCCGTCGTTGTTGGTCCG 61.709 66.667 0.00 0.00 0.00 4.79
9760 11379 2.279650 CCGTCGTTGTTGGTCCGT 60.280 61.111 0.00 0.00 0.00 4.69
9761 11380 2.305127 CCGTCGTTGTTGGTCCGTC 61.305 63.158 0.00 0.00 0.00 4.79
9762 11381 2.641783 CGTCGTTGTTGGTCCGTCG 61.642 63.158 0.00 0.00 0.00 5.12
9763 11382 2.659244 TCGTTGTTGGTCCGTCGC 60.659 61.111 0.00 0.00 0.00 5.19
9764 11383 3.708734 CGTTGTTGGTCCGTCGCC 61.709 66.667 0.00 0.00 0.00 5.54
9765 11384 2.589442 GTTGTTGGTCCGTCGCCA 60.589 61.111 0.00 0.00 0.00 5.69
9766 11385 1.964373 GTTGTTGGTCCGTCGCCAT 60.964 57.895 0.00 0.00 35.71 4.40
9767 11386 1.669760 TTGTTGGTCCGTCGCCATC 60.670 57.895 0.00 0.00 35.71 3.51
9768 11387 2.047655 GTTGGTCCGTCGCCATCA 60.048 61.111 0.00 0.00 35.71 3.07
9769 11388 1.449601 GTTGGTCCGTCGCCATCAT 60.450 57.895 0.00 0.00 35.71 2.45
9770 11389 0.179094 GTTGGTCCGTCGCCATCATA 60.179 55.000 0.00 0.00 35.71 2.15
9771 11390 0.179094 TTGGTCCGTCGCCATCATAC 60.179 55.000 0.00 0.00 35.71 2.39
9772 11391 1.300697 GGTCCGTCGCCATCATACC 60.301 63.158 0.00 0.00 0.00 2.73
9773 11392 1.740285 GTCCGTCGCCATCATACCT 59.260 57.895 0.00 0.00 0.00 3.08
9774 11393 0.104304 GTCCGTCGCCATCATACCTT 59.896 55.000 0.00 0.00 0.00 3.50
9775 11394 0.387929 TCCGTCGCCATCATACCTTC 59.612 55.000 0.00 0.00 0.00 3.46
9776 11395 0.939577 CCGTCGCCATCATACCTTCG 60.940 60.000 0.00 0.00 0.00 3.79
9777 11396 0.248907 CGTCGCCATCATACCTTCGT 60.249 55.000 0.00 0.00 0.00 3.85
9778 11397 1.488527 GTCGCCATCATACCTTCGTC 58.511 55.000 0.00 0.00 0.00 4.20
9779 11398 1.107945 TCGCCATCATACCTTCGTCA 58.892 50.000 0.00 0.00 0.00 4.35
9780 11399 1.686587 TCGCCATCATACCTTCGTCAT 59.313 47.619 0.00 0.00 0.00 3.06
9781 11400 1.794701 CGCCATCATACCTTCGTCATG 59.205 52.381 0.00 0.00 0.00 3.07
9782 11401 2.146342 GCCATCATACCTTCGTCATGG 58.854 52.381 0.00 0.00 34.94 3.66
9783 11402 2.771089 CCATCATACCTTCGTCATGGG 58.229 52.381 0.00 0.00 0.00 4.00
9784 11403 2.368548 CCATCATACCTTCGTCATGGGA 59.631 50.000 0.00 0.00 0.00 4.37
9785 11404 3.008375 CCATCATACCTTCGTCATGGGAT 59.992 47.826 0.00 0.00 0.00 3.85
9786 11405 3.751479 TCATACCTTCGTCATGGGATG 57.249 47.619 0.00 0.00 44.10 3.51
9787 11406 3.038280 TCATACCTTCGTCATGGGATGT 58.962 45.455 4.39 0.00 43.41 3.06
9788 11407 3.069586 TCATACCTTCGTCATGGGATGTC 59.930 47.826 4.39 0.00 43.41 3.06
9789 11408 0.541863 ACCTTCGTCATGGGATGTCC 59.458 55.000 0.00 0.00 0.00 4.02
9800 11419 3.689832 GGATGTCCCAACCCACAAT 57.310 52.632 0.00 0.00 34.14 2.71
9801 11420 1.185315 GGATGTCCCAACCCACAATG 58.815 55.000 0.00 0.00 34.14 2.82
9802 11421 0.532115 GATGTCCCAACCCACAATGC 59.468 55.000 0.00 0.00 0.00 3.56
9803 11422 0.904394 ATGTCCCAACCCACAATGCC 60.904 55.000 0.00 0.00 0.00 4.40
9804 11423 2.282816 TCCCAACCCACAATGCCG 60.283 61.111 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 0.395173 GAGAGAGAGGAGGCGGAAGT 60.395 60.000 0.00 0.00 0.00 3.01
126 138 0.744281 CGAGGAGGAGAGAGAAAGCC 59.256 60.000 0.00 0.00 0.00 4.35
334 353 4.586235 AGCACTGCCACCACCACC 62.586 66.667 0.00 0.00 0.00 4.61
335 354 3.289834 CAGCACTGCCACCACCAC 61.290 66.667 0.00 0.00 0.00 4.16
589 617 1.007964 CCCAGACTAGATCGCAGCG 60.008 63.158 9.06 9.06 0.00 5.18
604 632 1.068943 TAAGCAACCCCCAACTCCCA 61.069 55.000 0.00 0.00 0.00 4.37
616 644 4.006319 AGACAGGAGCAGAATTAAGCAAC 58.994 43.478 4.63 0.00 0.00 4.17
633 661 2.031516 CGAGCAAGGCACCAGACAG 61.032 63.158 0.00 0.00 0.00 3.51
658 972 1.765314 CACCAAATCCAACCCCACAAA 59.235 47.619 0.00 0.00 0.00 2.83
659 973 1.418334 CACCAAATCCAACCCCACAA 58.582 50.000 0.00 0.00 0.00 3.33
660 974 1.118356 GCACCAAATCCAACCCCACA 61.118 55.000 0.00 0.00 0.00 4.17
661 975 0.831711 AGCACCAAATCCAACCCCAC 60.832 55.000 0.00 0.00 0.00 4.61
776 1381 4.275936 AGCACAAATCTACTGAACACCAAC 59.724 41.667 0.00 0.00 0.00 3.77
1128 1739 4.681978 AACGGGGACTGCGACTGC 62.682 66.667 0.00 0.00 39.14 4.40
1432 2043 2.765356 CCATCTGCTGCTGCTGCTG 61.765 63.158 27.67 26.32 40.48 4.41
1433 2044 2.272230 ATCCATCTGCTGCTGCTGCT 62.272 55.000 27.67 9.19 40.48 4.24
1658 2278 6.507900 TGCGACTCAAATTTTACATTTCCAA 58.492 32.000 0.00 0.00 0.00 3.53
2365 3010 8.449251 AAAGAAGAGAAAGAGATGCATATTCC 57.551 34.615 0.00 0.00 0.00 3.01
2501 3147 9.313118 GCAAACCCATAAGGAAAGTTATAAATG 57.687 33.333 0.00 0.00 39.89 2.32
2621 3267 2.808543 AGATCAAACCAGAAACACGAGC 59.191 45.455 0.00 0.00 0.00 5.03
2647 3293 9.698309 CTGTTGTCTCTGTAAAGATAAGAAGAA 57.302 33.333 0.00 0.00 28.51 2.52
2648 3294 8.861086 ACTGTTGTCTCTGTAAAGATAAGAAGA 58.139 33.333 0.00 0.00 28.51 2.87
2690 3336 4.797471 TCGCATATTTGATTTGGCATAGC 58.203 39.130 0.00 0.00 0.00 2.97
2843 3489 7.945109 GGATTAAAAACTATCCTTAGATGCCCT 59.055 37.037 0.00 0.00 37.83 5.19
3105 3936 6.096423 TGACCTGCGAGTAAAACTATGTCTAT 59.904 38.462 0.00 0.00 0.00 1.98
3123 3954 5.841957 AAATAACAAGATCCATGACCTGC 57.158 39.130 0.00 0.00 0.00 4.85
3164 4003 6.639686 CCACAGTGCAAAAATATATCAGATGC 59.360 38.462 0.00 6.03 0.00 3.91
3392 4233 2.827800 TAGATAGCACCAGCATCAGC 57.172 50.000 0.00 0.00 45.49 4.26
3486 4327 0.394488 GGCTCCTTTACAGGGAAGGC 60.394 60.000 0.00 0.00 42.73 4.35
3624 4465 1.568504 ATGCCCGTCTTCAGACCTTA 58.431 50.000 1.25 0.00 41.86 2.69
3656 4497 0.813184 AATGCTGCGGGATTGTTGAG 59.187 50.000 11.96 0.00 32.32 3.02
3670 4511 0.957395 CGTCAGGGACAAGCAATGCT 60.957 55.000 0.00 0.00 42.56 3.79
3689 4530 2.036475 TGCCTCTGAGACACTCTTCAAC 59.964 50.000 6.17 0.00 0.00 3.18
3710 4551 8.854117 GCAATGAAATAAATGGAAGTCCTCTAT 58.146 33.333 0.00 0.00 36.82 1.98
3711 4552 8.055181 AGCAATGAAATAAATGGAAGTCCTCTA 58.945 33.333 0.00 0.00 36.82 2.43
3712 4553 6.894103 AGCAATGAAATAAATGGAAGTCCTCT 59.106 34.615 0.00 0.00 36.82 3.69
3713 4554 7.105241 AGCAATGAAATAAATGGAAGTCCTC 57.895 36.000 0.00 0.00 36.82 3.71
3714 4555 7.486407 AAGCAATGAAATAAATGGAAGTCCT 57.514 32.000 0.00 0.00 36.82 3.85
3715 4556 9.822185 ATTAAGCAATGAAATAAATGGAAGTCC 57.178 29.630 0.00 0.00 0.00 3.85
3728 4569 9.705290 GTTAAGAGGGAAAATTAAGCAATGAAA 57.295 29.630 0.00 0.00 0.00 2.69
3729 4570 9.088987 AGTTAAGAGGGAAAATTAAGCAATGAA 57.911 29.630 0.00 0.00 0.00 2.57
3730 4571 8.650143 AGTTAAGAGGGAAAATTAAGCAATGA 57.350 30.769 0.00 0.00 0.00 2.57
3734 4575 9.528489 ACATAAGTTAAGAGGGAAAATTAAGCA 57.472 29.630 0.00 0.00 0.00 3.91
3743 4584 9.895138 GTTTGGTATACATAAGTTAAGAGGGAA 57.105 33.333 5.01 0.00 0.00 3.97
3744 4585 9.049050 TGTTTGGTATACATAAGTTAAGAGGGA 57.951 33.333 5.01 0.00 0.00 4.20
3745 4586 9.847224 ATGTTTGGTATACATAAGTTAAGAGGG 57.153 33.333 5.01 0.00 34.59 4.30
3752 4593 9.826574 ATCACGTATGTTTGGTATACATAAGTT 57.173 29.630 5.01 0.00 43.66 2.66
3753 4594 9.826574 AATCACGTATGTTTGGTATACATAAGT 57.173 29.630 5.01 8.18 45.53 2.24
3755 4596 9.263538 GGAATCACGTATGTTTGGTATACATAA 57.736 33.333 5.01 0.00 39.46 1.90
3756 4597 8.644216 AGGAATCACGTATGTTTGGTATACATA 58.356 33.333 5.01 0.00 37.42 2.29
3757 4598 7.506114 AGGAATCACGTATGTTTGGTATACAT 58.494 34.615 5.01 0.00 39.44 2.29
3758 4599 6.880484 AGGAATCACGTATGTTTGGTATACA 58.120 36.000 5.01 0.00 31.94 2.29
3759 4600 8.876275 TTAGGAATCACGTATGTTTGGTATAC 57.124 34.615 0.00 0.00 0.00 1.47
3761 4602 8.836413 CAATTAGGAATCACGTATGTTTGGTAT 58.164 33.333 0.00 0.00 0.00 2.73
3762 4603 7.201661 GCAATTAGGAATCACGTATGTTTGGTA 60.202 37.037 0.00 0.00 0.00 3.25
3763 4604 6.404293 GCAATTAGGAATCACGTATGTTTGGT 60.404 38.462 0.00 0.00 0.00 3.67
3764 4605 5.971202 GCAATTAGGAATCACGTATGTTTGG 59.029 40.000 0.00 0.00 0.00 3.28
3765 4606 6.785191 AGCAATTAGGAATCACGTATGTTTG 58.215 36.000 0.00 0.00 0.00 2.93
3766 4607 6.597672 TGAGCAATTAGGAATCACGTATGTTT 59.402 34.615 0.00 0.00 0.00 2.83
3767 4608 6.112734 TGAGCAATTAGGAATCACGTATGTT 58.887 36.000 0.00 0.00 0.00 2.71
3768 4609 5.670485 TGAGCAATTAGGAATCACGTATGT 58.330 37.500 0.00 0.00 0.00 2.29
3769 4610 6.347969 CCATGAGCAATTAGGAATCACGTATG 60.348 42.308 0.00 0.00 0.00 2.39
3770 4611 5.702670 CCATGAGCAATTAGGAATCACGTAT 59.297 40.000 0.00 0.00 0.00 3.06
3771 4612 5.056480 CCATGAGCAATTAGGAATCACGTA 58.944 41.667 0.00 0.00 0.00 3.57
3772 4613 3.879295 CCATGAGCAATTAGGAATCACGT 59.121 43.478 0.00 0.00 0.00 4.49
3773 4614 3.304257 GCCATGAGCAATTAGGAATCACG 60.304 47.826 0.00 0.00 42.97 4.35
3774 4615 3.005155 GGCCATGAGCAATTAGGAATCAC 59.995 47.826 0.00 0.00 46.50 3.06
3775 4616 3.117398 AGGCCATGAGCAATTAGGAATCA 60.117 43.478 5.01 0.00 46.50 2.57
3776 4617 3.494332 AGGCCATGAGCAATTAGGAATC 58.506 45.455 5.01 0.00 46.50 2.52
3777 4618 3.607490 AGGCCATGAGCAATTAGGAAT 57.393 42.857 5.01 0.00 46.50 3.01
3778 4619 4.729552 ATAGGCCATGAGCAATTAGGAA 57.270 40.909 5.01 0.00 46.50 3.36
3779 4620 4.729552 AATAGGCCATGAGCAATTAGGA 57.270 40.909 5.01 0.00 46.50 2.94
3780 4621 7.067494 GGTATTAATAGGCCATGAGCAATTAGG 59.933 40.741 5.01 0.00 46.50 2.69
3781 4622 7.067494 GGGTATTAATAGGCCATGAGCAATTAG 59.933 40.741 5.01 0.00 46.50 1.73
3782 4623 6.889722 GGGTATTAATAGGCCATGAGCAATTA 59.110 38.462 5.01 2.34 46.50 1.40
3783 4624 5.716703 GGGTATTAATAGGCCATGAGCAATT 59.283 40.000 5.01 3.23 46.50 2.32
3784 4625 5.222316 TGGGTATTAATAGGCCATGAGCAAT 60.222 40.000 5.01 0.00 46.50 3.56
3785 4626 4.105537 TGGGTATTAATAGGCCATGAGCAA 59.894 41.667 5.01 0.00 46.50 3.91
3786 4627 3.655291 TGGGTATTAATAGGCCATGAGCA 59.345 43.478 5.01 0.00 46.50 4.26
3787 4628 4.301072 TGGGTATTAATAGGCCATGAGC 57.699 45.455 5.01 0.00 42.60 4.26
3788 4629 4.641989 GCATGGGTATTAATAGGCCATGAG 59.358 45.833 5.01 0.00 36.63 2.90
3789 4630 4.292041 AGCATGGGTATTAATAGGCCATGA 59.708 41.667 5.01 0.00 36.63 3.07
3790 4631 4.603131 AGCATGGGTATTAATAGGCCATG 58.397 43.478 5.01 0.00 37.29 3.66
3791 4632 4.953781 AGCATGGGTATTAATAGGCCAT 57.046 40.909 5.01 0.00 0.00 4.40
3792 4633 5.754782 CATAGCATGGGTATTAATAGGCCA 58.245 41.667 5.01 0.00 0.00 5.36
3793 4634 4.580580 GCATAGCATGGGTATTAATAGGCC 59.419 45.833 0.00 0.00 0.00 5.19
3794 4635 5.066505 GTGCATAGCATGGGTATTAATAGGC 59.933 44.000 0.00 0.00 41.91 3.93
3795 4636 5.294306 CGTGCATAGCATGGGTATTAATAGG 59.706 44.000 3.35 0.00 41.91 2.57
3889 4732 5.877012 ACTATGGCAGTCAAACAATACTGAG 59.123 40.000 6.65 0.00 44.79 3.35
3898 4741 4.320494 CCAAGTCAACTATGGCAGTCAAAC 60.320 45.833 0.00 0.00 36.04 2.93
4046 4890 6.916360 TTTGGCAAGAGGAACTTATTTGAT 57.084 33.333 0.00 0.00 41.55 2.57
4084 4928 1.210478 AGCTCATCGGGCACACTTAAT 59.790 47.619 0.00 0.00 0.00 1.40
4098 4963 5.302823 ACTCCTTTACTTTTGCAAAGCTCAT 59.697 36.000 12.41 0.48 32.77 2.90
4178 5074 2.522185 AGGTTTGCAGTAGTCGTCCTA 58.478 47.619 0.00 0.00 0.00 2.94
4239 5636 1.220749 GCCAGATGAAGCCCGTGTA 59.779 57.895 0.00 0.00 0.00 2.90
4450 5959 1.713597 TATTGCTGCTGTGTCAGACG 58.286 50.000 0.00 0.00 36.19 4.18
4598 6107 0.178992 ATGCCACGGGTATTCATGGG 60.179 55.000 0.00 0.00 32.49 4.00
4612 6121 0.036732 ACCTTCGAAGCTCAATGCCA 59.963 50.000 19.99 0.00 44.23 4.92
4713 6222 5.009410 GCCTAAGCTTGAATAAGATGCATGT 59.991 40.000 9.86 0.00 35.92 3.21
4792 6301 2.225091 TGGAATGGTGCCTGAACTGAAT 60.225 45.455 0.00 0.00 0.00 2.57
4905 6414 6.838198 GCATGATGTTGCATTTGATGTAAT 57.162 33.333 0.00 0.00 42.31 1.89
4948 6457 1.077501 TGCCCTGACAGCATAAGCC 60.078 57.895 0.00 0.00 43.56 4.35
4949 6458 4.643795 TGCCCTGACAGCATAAGC 57.356 55.556 0.00 0.00 42.56 3.09
5022 6531 5.371629 GTTGATCCGAGTTTTGTTTAGACG 58.628 41.667 0.00 0.00 0.00 4.18
5030 6539 1.135972 CGCTGGTTGATCCGAGTTTTG 60.136 52.381 0.00 0.00 39.52 2.44
5070 6579 3.948719 GGCTGAACCCACCGACCA 61.949 66.667 0.00 0.00 0.00 4.02
5226 6735 5.160607 TCTACATTCCAACAATCCTCGTT 57.839 39.130 0.00 0.00 0.00 3.85
5255 6764 0.401356 TGGCAACTGGATGCTTCTCA 59.599 50.000 7.48 0.00 45.68 3.27
5261 6770 2.231964 TCTTTTCATGGCAACTGGATGC 59.768 45.455 0.00 0.00 45.67 3.91
5279 6788 9.807921 TCCACTTACCTAAAATGAGATTTTCTT 57.192 29.630 0.00 0.00 41.26 2.52
5353 6864 2.835764 TGGCTAAACTATCAGTCCGGTT 59.164 45.455 0.00 0.00 0.00 4.44
5354 6865 2.431057 CTGGCTAAACTATCAGTCCGGT 59.569 50.000 0.00 0.00 0.00 5.28
5355 6866 2.693591 TCTGGCTAAACTATCAGTCCGG 59.306 50.000 0.00 0.00 0.00 5.14
5356 6867 4.386867 TTCTGGCTAAACTATCAGTCCG 57.613 45.455 0.00 0.00 0.00 4.79
5357 6868 5.354513 GGTTTTCTGGCTAAACTATCAGTCC 59.645 44.000 0.00 0.00 36.12 3.85
5358 6869 5.063564 CGGTTTTCTGGCTAAACTATCAGTC 59.936 44.000 0.00 0.00 36.12 3.51
5359 6870 4.935808 CGGTTTTCTGGCTAAACTATCAGT 59.064 41.667 0.00 0.00 36.12 3.41
5360 6871 4.332819 CCGGTTTTCTGGCTAAACTATCAG 59.667 45.833 0.00 0.00 39.73 2.90
5361 6872 4.020039 TCCGGTTTTCTGGCTAAACTATCA 60.020 41.667 0.00 0.00 45.57 2.15
5362 6873 4.331992 GTCCGGTTTTCTGGCTAAACTATC 59.668 45.833 0.00 0.00 45.57 2.08
5363 6874 4.019591 AGTCCGGTTTTCTGGCTAAACTAT 60.020 41.667 0.00 0.00 45.57 2.12
5364 6875 3.325716 AGTCCGGTTTTCTGGCTAAACTA 59.674 43.478 0.00 0.00 45.57 2.24
5365 6876 2.105993 AGTCCGGTTTTCTGGCTAAACT 59.894 45.455 0.00 0.00 45.57 2.66
5366 6877 2.225727 CAGTCCGGTTTTCTGGCTAAAC 59.774 50.000 0.00 0.00 45.57 2.01
5367 6878 2.105134 TCAGTCCGGTTTTCTGGCTAAA 59.895 45.455 0.00 0.00 45.57 1.85
5368 6879 1.695242 TCAGTCCGGTTTTCTGGCTAA 59.305 47.619 0.00 0.00 45.57 3.09
5369 6880 1.344065 TCAGTCCGGTTTTCTGGCTA 58.656 50.000 0.00 0.00 45.57 3.93
5370 6881 0.693049 ATCAGTCCGGTTTTCTGGCT 59.307 50.000 0.00 0.00 45.57 4.75
5371 6882 2.396590 TATCAGTCCGGTTTTCTGGC 57.603 50.000 0.00 0.00 45.57 4.85
5373 6884 5.005394 CACGTAATATCAGTCCGGTTTTCTG 59.995 44.000 0.00 6.84 0.00 3.02
5374 6885 5.107133 CACGTAATATCAGTCCGGTTTTCT 58.893 41.667 0.00 0.00 0.00 2.52
5375 6886 4.260091 GCACGTAATATCAGTCCGGTTTTC 60.260 45.833 0.00 0.00 0.00 2.29
5376 6887 3.619929 GCACGTAATATCAGTCCGGTTTT 59.380 43.478 0.00 0.00 0.00 2.43
5377 6888 3.192466 GCACGTAATATCAGTCCGGTTT 58.808 45.455 0.00 0.00 0.00 3.27
5378 6889 2.166870 TGCACGTAATATCAGTCCGGTT 59.833 45.455 0.00 0.00 0.00 4.44
5379 6890 1.752498 TGCACGTAATATCAGTCCGGT 59.248 47.619 0.00 0.00 0.00 5.28
5380 6891 2.502213 TGCACGTAATATCAGTCCGG 57.498 50.000 0.00 0.00 0.00 5.14
5381 6892 2.794910 CCTTGCACGTAATATCAGTCCG 59.205 50.000 0.00 0.00 0.00 4.79
5382 6893 3.793559 ACCTTGCACGTAATATCAGTCC 58.206 45.455 0.00 0.00 0.00 3.85
5383 6894 5.109903 AGAACCTTGCACGTAATATCAGTC 58.890 41.667 0.00 0.00 0.00 3.51
5384 6895 5.086104 AGAACCTTGCACGTAATATCAGT 57.914 39.130 0.00 0.00 0.00 3.41
5385 6896 5.351465 ACAAGAACCTTGCACGTAATATCAG 59.649 40.000 6.61 0.00 0.00 2.90
5386 6897 5.242434 ACAAGAACCTTGCACGTAATATCA 58.758 37.500 6.61 0.00 0.00 2.15
5387 6898 5.796350 ACAAGAACCTTGCACGTAATATC 57.204 39.130 6.61 0.00 0.00 1.63
5388 6899 5.472137 ACAACAAGAACCTTGCACGTAATAT 59.528 36.000 6.61 0.00 0.00 1.28
5435 6946 5.467399 TGCGCGTATAAGGTTATATTTGCTT 59.533 36.000 8.43 0.00 0.00 3.91
5460 6971 1.228245 TCAAGACAGGGCAAGCACC 60.228 57.895 0.00 0.00 0.00 5.01
5461 6972 1.518903 GGTCAAGACAGGGCAAGCAC 61.519 60.000 2.29 0.00 0.00 4.40
5474 6985 5.491982 AGATACCAAGCAAGTAAGGTCAAG 58.508 41.667 0.00 0.00 35.62 3.02
5482 6993 6.003950 AGAAGCAAAAGATACCAAGCAAGTA 58.996 36.000 0.00 0.00 0.00 2.24
5484 6995 5.159209 CAGAAGCAAAAGATACCAAGCAAG 58.841 41.667 0.00 0.00 0.00 4.01
5494 7005 9.066892 TGAGTTATAACAACAGAAGCAAAAGAT 57.933 29.630 17.65 0.00 0.00 2.40
5580 7091 3.409026 ACAGTCAGCAAGGAAGGTAAG 57.591 47.619 0.00 0.00 0.00 2.34
5585 7096 4.498682 CCAAAGAAACAGTCAGCAAGGAAG 60.499 45.833 0.00 0.00 0.00 3.46
5588 7099 2.035066 CCCAAAGAAACAGTCAGCAAGG 59.965 50.000 0.00 0.00 0.00 3.61
5624 7135 6.015918 ACAATGGAAATTGATGGAGTTGGTA 58.984 36.000 5.49 0.00 35.60 3.25
5909 7429 4.093408 CACGTGAATGGAAACTACATCAGG 59.907 45.833 10.90 0.00 0.00 3.86
5966 7486 7.337942 ACAATAGGAGCTTATGGTCAGAAAAAG 59.662 37.037 9.69 0.00 42.05 2.27
5991 7511 8.524870 AGAGTATCAACATTTTGCATGAAAAC 57.475 30.769 0.00 0.00 35.07 2.43
6325 7846 9.520204 CATTTTTGACACTAGATTTTTGACACT 57.480 29.630 0.00 0.00 0.00 3.55
6330 7851 6.640499 TCCGCATTTTTGACACTAGATTTTTG 59.360 34.615 0.00 0.00 0.00 2.44
6337 7858 2.420022 CCCTCCGCATTTTTGACACTAG 59.580 50.000 0.00 0.00 0.00 2.57
6430 7967 0.546122 TGGATGGAATAACGGCAGCT 59.454 50.000 0.00 0.00 0.00 4.24
6570 8108 0.251297 CTTTCATGCCCAGGTCACCA 60.251 55.000 0.00 0.00 0.00 4.17
6591 8129 3.124636 CCATGTTTGTTACCGCTCAGTAC 59.875 47.826 0.00 0.00 0.00 2.73
6704 8242 5.105146 ACATCTCAACTCCTAATGACTGTCC 60.105 44.000 5.17 0.00 0.00 4.02
6748 8286 1.063417 GGTGGACCTGCTAGTACCCTA 60.063 57.143 0.00 0.00 0.00 3.53
7023 8575 2.760650 GGCAGATTAAAGGGTCCAAAGG 59.239 50.000 0.00 0.00 0.00 3.11
7039 8591 4.892934 GGTATTGTGGATTAATTGGGCAGA 59.107 41.667 0.00 0.00 0.00 4.26
7203 8756 2.175202 GATGAGAGACCATCCGGCTAT 58.825 52.381 0.00 0.00 37.54 2.97
7205 8758 1.459455 CGATGAGAGACCATCCGGCT 61.459 60.000 0.00 0.00 39.71 5.52
7221 8774 3.682766 CTCATCAAGAGGCTGCGAT 57.317 52.632 0.00 0.00 40.84 4.58
7250 8803 2.404789 CTGCCTTTGCCGCATACG 59.595 61.111 0.00 0.00 35.25 3.06
7274 8827 3.504906 ACCACATCAAAGCTCTGTCATTG 59.495 43.478 0.00 0.00 0.00 2.82
7277 8830 2.497138 CACCACATCAAAGCTCTGTCA 58.503 47.619 0.00 0.00 0.00 3.58
7352 8905 0.761802 GCAGCCTGGGAGCTAATACT 59.238 55.000 0.00 0.00 42.61 2.12
7449 9002 2.274948 GAGCATCCATGGGACCTGCA 62.275 60.000 22.64 1.63 39.41 4.41
7597 9152 1.135170 GCACCAACGGTCTAGGAGTAC 60.135 57.143 1.84 0.00 31.02 2.73
7661 9216 1.782201 ATCAGCAGGAACCAGGCACA 61.782 55.000 9.43 0.00 0.00 4.57
7662 9217 0.610232 AATCAGCAGGAACCAGGCAC 60.610 55.000 9.43 0.00 0.00 5.01
7663 9218 0.112995 AAATCAGCAGGAACCAGGCA 59.887 50.000 9.43 0.00 0.00 4.75
7664 9219 2.019984 CTAAATCAGCAGGAACCAGGC 58.980 52.381 0.00 0.00 0.00 4.85
7665 9220 3.356529 ACTAAATCAGCAGGAACCAGG 57.643 47.619 0.00 0.00 0.00 4.45
7666 9221 4.080863 AGGTACTAAATCAGCAGGAACCAG 60.081 45.833 0.00 0.00 36.02 4.00
7686 9241 4.216411 ACTGTGTTTTGTGTGACTAGGT 57.784 40.909 0.00 0.00 0.00 3.08
7851 9406 6.352737 GGTTGAAGAGGGTTAATACCTGATGA 60.353 42.308 6.42 0.00 44.38 2.92
8222 9777 2.194597 GGGGCGGGCATCATGTTA 59.805 61.111 3.27 0.00 0.00 2.41
8835 10398 1.676635 GTGAGGGCAGCTGCATCAA 60.677 57.895 34.17 21.58 44.36 2.57
9317 10907 4.127171 GACAGAAGAGTGCACCTTTTACA 58.873 43.478 14.63 0.00 0.00 2.41
9337 10927 2.549754 CACTGACAGAAACATGTGGGAC 59.450 50.000 10.08 0.00 32.25 4.46
9343 10933 6.732154 AGAACAAATCACTGACAGAAACATG 58.268 36.000 10.08 5.26 0.00 3.21
9428 11018 5.046910 ACAATATTCAGAAAACCACGCTG 57.953 39.130 0.00 0.00 0.00 5.18
9478 11068 7.223387 CCCACAATTCAAGAAGAAAAAGACTTG 59.777 37.037 0.00 0.00 40.22 3.16
9483 11073 4.751600 GCCCCACAATTCAAGAAGAAAAAG 59.248 41.667 0.00 0.00 40.22 2.27
9501 11091 1.074405 GGATGCTCTCATTATGCCCCA 59.926 52.381 0.00 0.00 31.96 4.96
9545 11135 1.080638 TGGGTTAGATTTGCCCCAGT 58.919 50.000 0.00 0.00 42.21 4.00
9582 11179 1.064017 TGAACTGGGTATGGGGATTGC 60.064 52.381 0.00 0.00 0.00 3.56
9587 11184 1.766496 ACGTATGAACTGGGTATGGGG 59.234 52.381 0.00 0.00 0.00 4.96
9589 11186 3.006537 CCCTACGTATGAACTGGGTATGG 59.993 52.174 7.08 0.00 0.00 2.74
9596 11193 0.742505 TCCGCCCTACGTATGAACTG 59.257 55.000 0.00 0.00 41.42 3.16
9597 11194 1.700955 ATCCGCCCTACGTATGAACT 58.299 50.000 0.00 0.00 41.42 3.01
9598 11195 3.508762 CATATCCGCCCTACGTATGAAC 58.491 50.000 0.00 0.00 41.42 3.18
9605 11223 0.976073 ATCCCCATATCCGCCCTACG 60.976 60.000 0.00 0.00 43.15 3.51
9608 11226 2.606587 GCATCCCCATATCCGCCCT 61.607 63.158 0.00 0.00 0.00 5.19
9624 11242 4.758251 CGGCGGTCATGTCCAGCA 62.758 66.667 20.27 0.00 0.00 4.41
9626 11244 4.758251 TGCGGCGGTCATGTCCAG 62.758 66.667 9.78 3.56 0.00 3.86
9627 11245 4.321966 TTGCGGCGGTCATGTCCA 62.322 61.111 9.78 0.00 0.00 4.02
9650 11268 4.202253 GGGTTTCTTCAAGCAAATTGGAGT 60.202 41.667 0.00 0.00 44.04 3.85
9664 11282 0.405973 AGGCAAGGAGGGGTTTCTTC 59.594 55.000 0.00 0.00 0.00 2.87
9669 11287 0.477795 AGGTTAGGCAAGGAGGGGTT 60.478 55.000 0.00 0.00 0.00 4.11
9670 11288 1.163555 AGGTTAGGCAAGGAGGGGT 59.836 57.895 0.00 0.00 0.00 4.95
9704 11323 3.018598 TGTGCAGACGAGAAAGAGAAG 57.981 47.619 0.00 0.00 0.00 2.85
9707 11326 2.343843 CGATTGTGCAGACGAGAAAGAG 59.656 50.000 0.00 0.00 0.00 2.85
9712 11331 1.446099 GGCGATTGTGCAGACGAGA 60.446 57.895 0.00 0.00 36.28 4.04
9726 11345 1.284408 GGCGAAACAACAATGGCGA 59.716 52.632 0.00 0.00 0.00 5.54
9733 11352 1.348938 CAACGACGGCGAAACAACA 59.651 52.632 22.49 0.00 41.64 3.33
9740 11359 2.659244 GACCAACAACGACGGCGA 60.659 61.111 22.49 0.00 41.64 5.54
9741 11360 3.708734 GGACCAACAACGACGGCG 61.709 66.667 10.39 10.39 44.79 6.46
9742 11361 3.708734 CGGACCAACAACGACGGC 61.709 66.667 0.00 0.00 0.00 5.68
9743 11362 2.279650 ACGGACCAACAACGACGG 60.280 61.111 0.00 0.00 0.00 4.79
9744 11363 2.641783 CGACGGACCAACAACGACG 61.642 63.158 0.00 0.00 39.01 5.12
9745 11364 2.935446 GCGACGGACCAACAACGAC 61.935 63.158 0.00 0.00 0.00 4.34
9746 11365 2.659244 GCGACGGACCAACAACGA 60.659 61.111 0.00 0.00 0.00 3.85
9747 11366 3.708734 GGCGACGGACCAACAACG 61.709 66.667 0.00 0.00 0.00 4.10
9748 11367 1.908066 GATGGCGACGGACCAACAAC 61.908 60.000 0.00 0.00 41.49 3.32
9749 11368 1.669760 GATGGCGACGGACCAACAA 60.670 57.895 0.00 0.00 41.49 2.83
9750 11369 2.047655 GATGGCGACGGACCAACA 60.048 61.111 0.00 0.00 41.49 3.33
9751 11370 0.179094 TATGATGGCGACGGACCAAC 60.179 55.000 0.00 0.00 41.49 3.77
9752 11371 0.179094 GTATGATGGCGACGGACCAA 60.179 55.000 0.00 0.00 41.49 3.67
9753 11372 1.440060 GTATGATGGCGACGGACCA 59.560 57.895 0.00 0.00 42.61 4.02
9754 11373 1.300697 GGTATGATGGCGACGGACC 60.301 63.158 0.00 0.00 0.00 4.46
9755 11374 0.104304 AAGGTATGATGGCGACGGAC 59.896 55.000 0.00 0.00 0.00 4.79
9756 11375 0.387929 GAAGGTATGATGGCGACGGA 59.612 55.000 0.00 0.00 0.00 4.69
9757 11376 0.939577 CGAAGGTATGATGGCGACGG 60.940 60.000 0.00 0.00 0.00 4.79
9758 11377 0.248907 ACGAAGGTATGATGGCGACG 60.249 55.000 0.00 0.00 0.00 5.12
9759 11378 1.202371 TGACGAAGGTATGATGGCGAC 60.202 52.381 0.00 0.00 0.00 5.19
9760 11379 1.107945 TGACGAAGGTATGATGGCGA 58.892 50.000 0.00 0.00 0.00 5.54
9761 11380 1.794701 CATGACGAAGGTATGATGGCG 59.205 52.381 0.00 0.00 0.00 5.69
9762 11381 2.146342 CCATGACGAAGGTATGATGGC 58.854 52.381 0.00 0.00 0.00 4.40
9763 11382 2.368548 TCCCATGACGAAGGTATGATGG 59.631 50.000 0.00 0.00 31.67 3.51
9764 11383 3.751479 TCCCATGACGAAGGTATGATG 57.249 47.619 0.00 0.00 0.00 3.07
9765 11384 3.648067 ACATCCCATGACGAAGGTATGAT 59.352 43.478 0.00 0.00 0.00 2.45
9766 11385 3.038280 ACATCCCATGACGAAGGTATGA 58.962 45.455 0.00 0.00 0.00 2.15
9767 11386 3.393800 GACATCCCATGACGAAGGTATG 58.606 50.000 0.00 0.00 0.00 2.39
9768 11387 2.368875 GGACATCCCATGACGAAGGTAT 59.631 50.000 0.00 0.00 34.14 2.73
9769 11388 1.760613 GGACATCCCATGACGAAGGTA 59.239 52.381 0.00 0.00 34.14 3.08
9770 11389 0.541863 GGACATCCCATGACGAAGGT 59.458 55.000 0.00 0.00 34.14 3.50
9771 11390 3.386543 GGACATCCCATGACGAAGG 57.613 57.895 0.00 0.00 34.14 3.46
9782 11401 1.185315 CATTGTGGGTTGGGACATCC 58.815 55.000 0.00 0.00 46.85 3.51
9783 11402 0.532115 GCATTGTGGGTTGGGACATC 59.468 55.000 0.00 0.00 39.30 3.06
9784 11403 0.904394 GGCATTGTGGGTTGGGACAT 60.904 55.000 0.00 0.00 39.30 3.06
9785 11404 1.532794 GGCATTGTGGGTTGGGACA 60.533 57.895 0.00 0.00 0.00 4.02
9786 11405 2.635443 CGGCATTGTGGGTTGGGAC 61.635 63.158 0.00 0.00 0.00 4.46
9787 11406 2.282816 CGGCATTGTGGGTTGGGA 60.283 61.111 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.