Multiple sequence alignment - TraesCS4B01G104000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G104000 chr4B 100.000 3635 0 0 1 3635 110227742 110231376 0.000000e+00 6713
1 TraesCS4B01G104000 chr4B 95.672 878 24 4 1 877 636038230 636037366 0.000000e+00 1399
2 TraesCS4B01G104000 chr4B 83.018 1478 220 17 1094 2559 667426658 667428116 0.000000e+00 1310
3 TraesCS4B01G104000 chr4A 93.673 2023 84 19 880 2891 507592447 507594436 0.000000e+00 2987
4 TraesCS4B01G104000 chr4A 87.708 301 32 3 582 880 72954118 72954415 2.690000e-91 346
5 TraesCS4B01G104000 chr4D 91.733 2020 110 34 880 2882 78779512 78781491 0.000000e+00 2752
6 TraesCS4B01G104000 chr2B 95.667 877 37 1 1 877 174795605 174796480 0.000000e+00 1408
7 TraesCS4B01G104000 chr2B 81.218 1576 249 27 1013 2557 762118355 762116796 0.000000e+00 1227
8 TraesCS4B01G104000 chr2B 93.169 688 45 2 2948 3634 392541586 392542272 0.000000e+00 1009
9 TraesCS4B01G104000 chr1B 95.444 878 39 1 1 877 40431971 40431094 0.000000e+00 1399
10 TraesCS4B01G104000 chr1B 93.387 877 30 1 1 877 434411888 434412736 0.000000e+00 1273
11 TraesCS4B01G104000 chr1B 96.398 694 23 2 2943 3634 142859883 142859190 0.000000e+00 1142
12 TraesCS4B01G104000 chr1B 95.712 653 27 1 2942 3593 616384548 616385200 0.000000e+00 1050
13 TraesCS4B01G104000 chr1B 95.253 653 25 3 2942 3593 158157845 158157198 0.000000e+00 1029
14 TraesCS4B01G104000 chrUn 83.322 1481 215 20 1092 2559 30095185 30096646 0.000000e+00 1338
15 TraesCS4B01G104000 chr5A 83.414 1453 207 19 1121 2559 706653370 706654802 0.000000e+00 1317
16 TraesCS4B01G104000 chr7B 82.353 1479 239 17 1088 2553 537517250 537515781 0.000000e+00 1266
17 TraesCS4B01G104000 chr7B 91.855 884 62 5 1 877 462493038 462492158 0.000000e+00 1225
18 TraesCS4B01G104000 chr7B 93.768 690 41 2 2946 3634 185030080 185029392 0.000000e+00 1035
19 TraesCS4B01G104000 chr7D 82.152 1496 245 18 1071 2553 509533804 509532318 0.000000e+00 1264
20 TraesCS4B01G104000 chr7D 94.676 695 35 2 2941 3634 379058671 379059364 0.000000e+00 1077
21 TraesCS4B01G104000 chr6A 92.166 868 62 6 1 866 398539630 398538767 0.000000e+00 1221
22 TraesCS4B01G104000 chr7A 80.118 1519 267 26 1059 2553 580225022 580226529 0.000000e+00 1099
23 TraesCS4B01G104000 chr7A 72.648 1371 307 57 1219 2558 675574347 675575680 3.400000e-105 392
24 TraesCS4B01G104000 chr7A 75.964 337 70 10 2225 2554 518657618 518657286 2.900000e-36 163
25 TraesCS4B01G104000 chr2A 93.381 695 43 3 2942 3634 703094507 703093814 0.000000e+00 1026
26 TraesCS4B01G104000 chr2A 93.237 695 43 4 2942 3634 752746061 752746753 0.000000e+00 1020
27 TraesCS4B01G104000 chr5D 88.939 660 70 3 2940 3597 27486819 27487477 0.000000e+00 811
28 TraesCS4B01G104000 chr6B 87.667 300 32 5 582 878 54159048 54159345 9.660000e-91 344
29 TraesCS4B01G104000 chr6D 87.500 296 35 2 583 877 401166353 401166059 1.250000e-89 340
30 TraesCS4B01G104000 chr2D 87.248 298 35 3 582 877 78435183 78435479 1.620000e-88 337
31 TraesCS4B01G104000 chr3D 77.871 357 65 10 2228 2573 67630476 67630123 3.680000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G104000 chr4B 110227742 110231376 3634 False 6713 6713 100.000 1 3635 1 chr4B.!!$F1 3634
1 TraesCS4B01G104000 chr4B 636037366 636038230 864 True 1399 1399 95.672 1 877 1 chr4B.!!$R1 876
2 TraesCS4B01G104000 chr4B 667426658 667428116 1458 False 1310 1310 83.018 1094 2559 1 chr4B.!!$F2 1465
3 TraesCS4B01G104000 chr4A 507592447 507594436 1989 False 2987 2987 93.673 880 2891 1 chr4A.!!$F2 2011
4 TraesCS4B01G104000 chr4D 78779512 78781491 1979 False 2752 2752 91.733 880 2882 1 chr4D.!!$F1 2002
5 TraesCS4B01G104000 chr2B 174795605 174796480 875 False 1408 1408 95.667 1 877 1 chr2B.!!$F1 876
6 TraesCS4B01G104000 chr2B 762116796 762118355 1559 True 1227 1227 81.218 1013 2557 1 chr2B.!!$R1 1544
7 TraesCS4B01G104000 chr2B 392541586 392542272 686 False 1009 1009 93.169 2948 3634 1 chr2B.!!$F2 686
8 TraesCS4B01G104000 chr1B 40431094 40431971 877 True 1399 1399 95.444 1 877 1 chr1B.!!$R1 876
9 TraesCS4B01G104000 chr1B 434411888 434412736 848 False 1273 1273 93.387 1 877 1 chr1B.!!$F1 876
10 TraesCS4B01G104000 chr1B 142859190 142859883 693 True 1142 1142 96.398 2943 3634 1 chr1B.!!$R2 691
11 TraesCS4B01G104000 chr1B 616384548 616385200 652 False 1050 1050 95.712 2942 3593 1 chr1B.!!$F2 651
12 TraesCS4B01G104000 chr1B 158157198 158157845 647 True 1029 1029 95.253 2942 3593 1 chr1B.!!$R3 651
13 TraesCS4B01G104000 chrUn 30095185 30096646 1461 False 1338 1338 83.322 1092 2559 1 chrUn.!!$F1 1467
14 TraesCS4B01G104000 chr5A 706653370 706654802 1432 False 1317 1317 83.414 1121 2559 1 chr5A.!!$F1 1438
15 TraesCS4B01G104000 chr7B 537515781 537517250 1469 True 1266 1266 82.353 1088 2553 1 chr7B.!!$R3 1465
16 TraesCS4B01G104000 chr7B 462492158 462493038 880 True 1225 1225 91.855 1 877 1 chr7B.!!$R2 876
17 TraesCS4B01G104000 chr7B 185029392 185030080 688 True 1035 1035 93.768 2946 3634 1 chr7B.!!$R1 688
18 TraesCS4B01G104000 chr7D 509532318 509533804 1486 True 1264 1264 82.152 1071 2553 1 chr7D.!!$R1 1482
19 TraesCS4B01G104000 chr7D 379058671 379059364 693 False 1077 1077 94.676 2941 3634 1 chr7D.!!$F1 693
20 TraesCS4B01G104000 chr6A 398538767 398539630 863 True 1221 1221 92.166 1 866 1 chr6A.!!$R1 865
21 TraesCS4B01G104000 chr7A 580225022 580226529 1507 False 1099 1099 80.118 1059 2553 1 chr7A.!!$F1 1494
22 TraesCS4B01G104000 chr7A 675574347 675575680 1333 False 392 392 72.648 1219 2558 1 chr7A.!!$F2 1339
23 TraesCS4B01G104000 chr2A 703093814 703094507 693 True 1026 1026 93.381 2942 3634 1 chr2A.!!$R1 692
24 TraesCS4B01G104000 chr2A 752746061 752746753 692 False 1020 1020 93.237 2942 3634 1 chr2A.!!$F1 692
25 TraesCS4B01G104000 chr5D 27486819 27487477 658 False 811 811 88.939 2940 3597 1 chr5D.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 535 0.038455 GCGGCTCCTCTAGATAGGGA 59.962 60.0 0.00 0.0 37.24 4.2 F
734 735 0.039035 GTGGGCCCCAACTGTCATAA 59.961 55.0 22.27 0.0 34.18 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2424 2510 0.179145 CGCTCTCGGACGTGGTAATT 60.179 55.0 0.0 0.0 0.0 1.40 R
2670 3009 0.466189 GATCCCGACCCGTACCTGTA 60.466 60.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 3.379445 GGGGAGTTGGCGACGAGA 61.379 66.667 0.00 0.00 0.00 4.04
179 180 3.880846 GCATACCTGTGCCGCTGC 61.881 66.667 0.00 0.00 39.18 5.25
180 181 2.124983 CATACCTGTGCCGCTGCT 60.125 61.111 0.70 0.00 38.71 4.24
181 182 2.124983 ATACCTGTGCCGCTGCTG 60.125 61.111 0.70 0.00 38.71 4.41
182 183 3.687321 ATACCTGTGCCGCTGCTGG 62.687 63.158 0.70 1.93 38.71 4.85
185 186 4.694233 CTGTGCCGCTGCTGGAGT 62.694 66.667 13.37 0.00 38.71 3.85
186 187 4.994471 TGTGCCGCTGCTGGAGTG 62.994 66.667 13.37 2.43 38.71 3.51
193 194 4.694233 CTGCTGGAGTGCGCACCT 62.694 66.667 35.51 22.94 35.36 4.00
194 195 4.687215 TGCTGGAGTGCGCACCTC 62.687 66.667 35.51 28.42 35.36 3.85
206 207 4.463879 CACCTCCGCCTCTGCAGG 62.464 72.222 15.13 0.00 43.82 4.85
240 241 4.704833 GGCAACTGCAGGCGAGGA 62.705 66.667 19.93 0.00 44.36 3.71
241 242 2.669569 GCAACTGCAGGCGAGGAA 60.670 61.111 19.93 0.00 41.59 3.36
242 243 2.970974 GCAACTGCAGGCGAGGAAC 61.971 63.158 19.93 0.00 41.59 3.62
243 244 2.357517 AACTGCAGGCGAGGAACG 60.358 61.111 19.93 0.00 45.66 3.95
244 245 3.883744 AACTGCAGGCGAGGAACGG 62.884 63.158 19.93 0.00 42.83 4.44
251 252 4.814294 GCGAGGAACGGCGTGGAT 62.814 66.667 15.70 1.15 42.83 3.41
252 253 2.582498 CGAGGAACGGCGTGGATC 60.582 66.667 15.70 7.61 38.46 3.36
253 254 2.202892 GAGGAACGGCGTGGATCC 60.203 66.667 15.70 17.73 0.00 3.36
280 281 4.803426 GGGCGTGACTCGAGGCAG 62.803 72.222 24.49 16.85 42.86 4.85
281 282 4.803426 GGCGTGACTCGAGGCAGG 62.803 72.222 31.77 31.77 42.86 4.85
282 283 4.803426 GCGTGACTCGAGGCAGGG 62.803 72.222 34.96 24.79 42.86 4.45
283 284 4.803426 CGTGACTCGAGGCAGGGC 62.803 72.222 29.26 14.56 42.86 5.19
284 285 3.695606 GTGACTCGAGGCAGGGCA 61.696 66.667 24.49 0.00 0.00 5.36
285 286 3.385384 TGACTCGAGGCAGGGCAG 61.385 66.667 19.45 0.00 0.00 4.85
286 287 4.154347 GACTCGAGGCAGGGCAGG 62.154 72.222 15.11 0.00 0.00 4.85
433 434 2.887568 CAGGAGATGCACGGCGTC 60.888 66.667 10.85 6.01 44.07 5.19
434 435 3.381983 AGGAGATGCACGGCGTCA 61.382 61.111 10.85 12.24 45.92 4.35
435 436 2.434185 GGAGATGCACGGCGTCAA 60.434 61.111 10.85 0.40 45.92 3.18
436 437 1.815421 GGAGATGCACGGCGTCAAT 60.815 57.895 10.85 6.63 45.92 2.57
437 438 1.638467 GAGATGCACGGCGTCAATC 59.362 57.895 10.85 16.16 45.92 2.67
438 439 1.766143 GAGATGCACGGCGTCAATCC 61.766 60.000 21.47 12.90 45.92 3.01
500 501 4.959596 GGCAGAGCGCTCGGGATC 62.960 72.222 33.38 19.55 41.91 3.36
502 503 3.586961 CAGAGCGCTCGGGATCGA 61.587 66.667 30.39 0.00 43.86 3.59
510 511 2.519541 TCGGGATCGAGCTCCTGG 60.520 66.667 12.89 2.99 41.35 4.45
511 512 4.292178 CGGGATCGAGCTCCTGGC 62.292 72.222 8.47 0.00 37.93 4.85
527 528 4.615834 GCGACGCGGCTCCTCTAG 62.616 72.222 11.76 0.00 0.00 2.43
528 529 2.895865 CGACGCGGCTCCTCTAGA 60.896 66.667 11.76 0.00 0.00 2.43
529 530 2.255172 CGACGCGGCTCCTCTAGAT 61.255 63.158 11.76 0.00 0.00 1.98
530 531 0.949588 CGACGCGGCTCCTCTAGATA 60.950 60.000 11.76 0.00 0.00 1.98
531 532 0.800012 GACGCGGCTCCTCTAGATAG 59.200 60.000 12.47 0.00 0.00 2.08
532 533 0.606944 ACGCGGCTCCTCTAGATAGG 60.607 60.000 12.47 0.00 38.06 2.57
533 534 1.309499 CGCGGCTCCTCTAGATAGGG 61.309 65.000 0.00 0.00 37.24 3.53
534 535 0.038455 GCGGCTCCTCTAGATAGGGA 59.962 60.000 0.00 0.00 37.24 4.20
535 536 1.953311 GCGGCTCCTCTAGATAGGGAG 60.953 61.905 18.13 18.13 46.65 4.30
542 543 3.732048 CTCTAGATAGGGAGGAGGGAC 57.268 57.143 0.00 0.00 0.00 4.46
543 544 2.310647 CTCTAGATAGGGAGGAGGGACC 59.689 59.091 0.00 0.00 39.35 4.46
553 554 3.987594 GGAGGGACCTGATTGCTTT 57.012 52.632 0.00 0.00 35.41 3.51
554 555 2.222227 GGAGGGACCTGATTGCTTTT 57.778 50.000 0.00 0.00 35.41 2.27
555 556 2.529632 GGAGGGACCTGATTGCTTTTT 58.470 47.619 0.00 0.00 35.41 1.94
576 577 7.663043 TTTTTGTAAAAACATGTAGGGACCT 57.337 32.000 0.00 0.00 33.29 3.85
577 578 6.642707 TTTGTAAAAACATGTAGGGACCTG 57.357 37.500 0.00 0.00 0.00 4.00
578 579 5.570205 TGTAAAAACATGTAGGGACCTGA 57.430 39.130 0.00 0.00 0.00 3.86
579 580 6.134535 TGTAAAAACATGTAGGGACCTGAT 57.865 37.500 0.00 0.00 0.00 2.90
580 581 6.548321 TGTAAAAACATGTAGGGACCTGATT 58.452 36.000 0.00 0.00 0.00 2.57
581 582 5.982890 AAAAACATGTAGGGACCTGATTG 57.017 39.130 0.00 0.00 0.00 2.67
582 583 4.927267 AAACATGTAGGGACCTGATTGA 57.073 40.909 0.00 0.00 0.00 2.57
583 584 4.927267 AACATGTAGGGACCTGATTGAA 57.073 40.909 0.00 0.00 0.00 2.69
584 585 4.927267 ACATGTAGGGACCTGATTGAAA 57.073 40.909 0.00 0.00 0.00 2.69
585 586 5.255397 ACATGTAGGGACCTGATTGAAAA 57.745 39.130 0.00 0.00 0.00 2.29
586 587 5.010282 ACATGTAGGGACCTGATTGAAAAC 58.990 41.667 0.00 0.00 0.00 2.43
587 588 4.993705 TGTAGGGACCTGATTGAAAACT 57.006 40.909 0.00 0.00 0.00 2.66
588 589 4.906618 TGTAGGGACCTGATTGAAAACTC 58.093 43.478 0.00 0.00 0.00 3.01
589 590 4.349636 TGTAGGGACCTGATTGAAAACTCA 59.650 41.667 0.00 0.00 0.00 3.41
590 591 4.026356 AGGGACCTGATTGAAAACTCAG 57.974 45.455 0.00 0.00 38.88 3.35
591 592 3.652869 AGGGACCTGATTGAAAACTCAGA 59.347 43.478 1.26 0.00 41.13 3.27
592 593 4.006319 GGGACCTGATTGAAAACTCAGAG 58.994 47.826 0.00 0.00 41.13 3.35
593 594 4.006319 GGACCTGATTGAAAACTCAGAGG 58.994 47.826 1.53 0.00 41.13 3.69
594 595 4.006319 GACCTGATTGAAAACTCAGAGGG 58.994 47.826 1.53 0.00 41.13 4.30
595 596 3.652869 ACCTGATTGAAAACTCAGAGGGA 59.347 43.478 1.53 0.00 41.13 4.20
596 597 4.006319 CCTGATTGAAAACTCAGAGGGAC 58.994 47.826 1.53 0.00 41.13 4.46
597 598 4.006319 CTGATTGAAAACTCAGAGGGACC 58.994 47.826 1.53 0.00 41.13 4.46
598 599 3.652869 TGATTGAAAACTCAGAGGGACCT 59.347 43.478 1.53 0.00 0.00 3.85
599 600 3.492102 TTGAAAACTCAGAGGGACCTG 57.508 47.619 1.53 0.00 35.55 4.00
600 601 2.689658 TGAAAACTCAGAGGGACCTGA 58.310 47.619 1.53 0.00 40.57 3.86
601 602 3.251484 TGAAAACTCAGAGGGACCTGAT 58.749 45.455 1.53 0.00 41.79 2.90
602 603 3.652869 TGAAAACTCAGAGGGACCTGATT 59.347 43.478 1.53 0.00 41.79 2.57
603 604 3.710209 AAACTCAGAGGGACCTGATTG 57.290 47.619 1.53 0.00 41.79 2.67
604 605 0.908198 ACTCAGAGGGACCTGATTGC 59.092 55.000 1.53 0.00 41.79 3.56
605 606 1.202330 CTCAGAGGGACCTGATTGCT 58.798 55.000 0.00 0.00 41.79 3.91
606 607 1.558756 CTCAGAGGGACCTGATTGCTT 59.441 52.381 0.00 0.00 41.79 3.91
607 608 1.988107 TCAGAGGGACCTGATTGCTTT 59.012 47.619 0.00 0.00 38.18 3.51
608 609 2.376518 TCAGAGGGACCTGATTGCTTTT 59.623 45.455 0.00 0.00 38.18 2.27
609 610 3.160269 CAGAGGGACCTGATTGCTTTTT 58.840 45.455 0.00 0.00 36.29 1.94
631 632 6.442541 TTTAGAAAACATACAGGGACCTGA 57.557 37.500 24.31 8.88 46.30 3.86
632 633 6.636454 TTAGAAAACATACAGGGACCTGAT 57.364 37.500 24.31 10.68 46.30 2.90
633 634 5.520748 AGAAAACATACAGGGACCTGATT 57.479 39.130 24.31 8.46 46.30 2.57
634 635 6.636454 AGAAAACATACAGGGACCTGATTA 57.364 37.500 24.31 8.13 46.30 1.75
635 636 6.415573 AGAAAACATACAGGGACCTGATTAC 58.584 40.000 24.31 10.22 46.30 1.89
636 637 6.215636 AGAAAACATACAGGGACCTGATTACT 59.784 38.462 24.31 4.60 46.30 2.24
637 638 6.388619 AAACATACAGGGACCTGATTACTT 57.611 37.500 24.31 9.10 46.30 2.24
638 639 6.388619 AACATACAGGGACCTGATTACTTT 57.611 37.500 24.31 3.16 46.30 2.66
639 640 6.388619 ACATACAGGGACCTGATTACTTTT 57.611 37.500 24.31 2.44 46.30 2.27
640 641 6.790319 ACATACAGGGACCTGATTACTTTTT 58.210 36.000 24.31 1.73 46.30 1.94
641 642 7.924541 ACATACAGGGACCTGATTACTTTTTA 58.075 34.615 24.31 3.94 46.30 1.52
642 643 8.047310 ACATACAGGGACCTGATTACTTTTTAG 58.953 37.037 24.31 4.01 46.30 1.85
643 644 6.697641 ACAGGGACCTGATTACTTTTTAGA 57.302 37.500 24.31 0.00 46.30 2.10
644 645 7.086685 ACAGGGACCTGATTACTTTTTAGAA 57.913 36.000 24.31 0.00 46.30 2.10
645 646 7.523415 ACAGGGACCTGATTACTTTTTAGAAA 58.477 34.615 24.31 0.00 46.30 2.52
646 647 8.002459 ACAGGGACCTGATTACTTTTTAGAAAA 58.998 33.333 24.31 0.00 46.30 2.29
647 648 8.297426 CAGGGACCTGATTACTTTTTAGAAAAC 58.703 37.037 13.06 0.00 46.30 2.43
648 649 8.225416 AGGGACCTGATTACTTTTTAGAAAACT 58.775 33.333 0.00 0.00 0.00 2.66
649 650 8.857098 GGGACCTGATTACTTTTTAGAAAACTT 58.143 33.333 0.00 0.00 0.00 2.66
658 659 7.342769 ACTTTTTAGAAAACTTACAGGTGGG 57.657 36.000 0.00 0.00 0.00 4.61
659 660 7.120716 ACTTTTTAGAAAACTTACAGGTGGGA 58.879 34.615 0.00 0.00 0.00 4.37
660 661 6.947644 TTTTAGAAAACTTACAGGTGGGAC 57.052 37.500 0.00 0.00 0.00 4.46
661 662 3.503800 AGAAAACTTACAGGTGGGACC 57.496 47.619 0.00 0.00 38.99 4.46
662 663 2.107726 AGAAAACTTACAGGTGGGACCC 59.892 50.000 2.45 2.45 39.75 4.46
663 664 1.525175 AAACTTACAGGTGGGACCCA 58.475 50.000 9.95 9.95 39.75 4.51
676 677 4.023726 TGGGACCCACATGTAAGTTAAC 57.976 45.455 9.95 0.00 0.00 2.01
677 678 3.004862 GGGACCCACATGTAAGTTAACG 58.995 50.000 5.33 0.00 0.00 3.18
678 679 3.004862 GGACCCACATGTAAGTTAACGG 58.995 50.000 0.00 0.00 0.00 4.44
679 680 3.557686 GGACCCACATGTAAGTTAACGGT 60.558 47.826 0.00 0.00 0.00 4.83
680 681 3.667360 ACCCACATGTAAGTTAACGGTC 58.333 45.455 0.00 0.00 0.00 4.79
681 682 3.071312 ACCCACATGTAAGTTAACGGTCA 59.929 43.478 0.00 1.38 0.00 4.02
682 683 4.066490 CCCACATGTAAGTTAACGGTCAA 58.934 43.478 0.00 0.00 0.00 3.18
683 684 4.515944 CCCACATGTAAGTTAACGGTCAAA 59.484 41.667 0.00 0.00 0.00 2.69
684 685 5.334569 CCCACATGTAAGTTAACGGTCAAAG 60.335 44.000 0.00 1.85 0.00 2.77
685 686 5.237779 CCACATGTAAGTTAACGGTCAAAGT 59.762 40.000 0.00 2.38 0.00 2.66
686 687 6.424509 CCACATGTAAGTTAACGGTCAAAGTA 59.575 38.462 0.00 0.00 0.00 2.24
687 688 7.041916 CCACATGTAAGTTAACGGTCAAAGTAA 60.042 37.037 0.00 0.00 0.00 2.24
688 689 8.336806 CACATGTAAGTTAACGGTCAAAGTAAA 58.663 33.333 0.00 0.00 0.00 2.01
689 690 9.059260 ACATGTAAGTTAACGGTCAAAGTAAAT 57.941 29.630 0.00 0.00 0.00 1.40
690 691 9.325150 CATGTAAGTTAACGGTCAAAGTAAATG 57.675 33.333 0.00 0.00 0.00 2.32
691 692 7.863666 TGTAAGTTAACGGTCAAAGTAAATGG 58.136 34.615 0.00 0.00 0.00 3.16
692 693 6.947644 AAGTTAACGGTCAAAGTAAATGGT 57.052 33.333 0.00 0.00 0.00 3.55
693 694 6.549912 AGTTAACGGTCAAAGTAAATGGTC 57.450 37.500 0.00 0.00 0.00 4.02
694 695 6.056884 AGTTAACGGTCAAAGTAAATGGTCA 58.943 36.000 0.00 0.00 0.00 4.02
695 696 6.543100 AGTTAACGGTCAAAGTAAATGGTCAA 59.457 34.615 0.00 0.00 0.00 3.18
696 697 5.838531 AACGGTCAAAGTAAATGGTCAAA 57.161 34.783 0.00 0.00 0.00 2.69
697 698 5.177725 ACGGTCAAAGTAAATGGTCAAAC 57.822 39.130 0.00 0.00 0.00 2.93
698 699 4.641094 ACGGTCAAAGTAAATGGTCAAACA 59.359 37.500 0.00 0.00 0.00 2.83
699 700 5.125739 ACGGTCAAAGTAAATGGTCAAACAA 59.874 36.000 0.00 0.00 0.00 2.83
700 701 6.037098 CGGTCAAAGTAAATGGTCAAACAAA 58.963 36.000 0.00 0.00 0.00 2.83
701 702 6.699642 CGGTCAAAGTAAATGGTCAAACAAAT 59.300 34.615 0.00 0.00 0.00 2.32
702 703 7.306515 CGGTCAAAGTAAATGGTCAAACAAATG 60.307 37.037 0.00 0.00 0.00 2.32
703 704 7.042119 GGTCAAAGTAAATGGTCAAACAAATGG 60.042 37.037 0.00 0.00 0.00 3.16
704 705 7.494298 GTCAAAGTAAATGGTCAAACAAATGGT 59.506 33.333 0.00 0.00 0.00 3.55
705 706 8.043710 TCAAAGTAAATGGTCAAACAAATGGTT 58.956 29.630 0.00 0.00 42.98 3.67
706 707 9.319143 CAAAGTAAATGGTCAAACAAATGGTTA 57.681 29.630 0.00 0.00 39.29 2.85
708 709 9.705290 AAGTAAATGGTCAAACAAATGGTTATC 57.295 29.630 0.00 0.00 39.29 1.75
709 710 9.088987 AGTAAATGGTCAAACAAATGGTTATCT 57.911 29.630 0.00 0.00 39.29 1.98
710 711 9.705290 GTAAATGGTCAAACAAATGGTTATCTT 57.295 29.630 0.00 0.00 39.29 2.40
712 713 9.705290 AAATGGTCAAACAAATGGTTATCTTAC 57.295 29.630 0.00 0.00 39.29 2.34
713 714 6.904498 TGGTCAAACAAATGGTTATCTTACG 58.096 36.000 0.00 0.00 39.29 3.18
714 715 6.487331 TGGTCAAACAAATGGTTATCTTACGT 59.513 34.615 0.00 0.00 39.29 3.57
715 716 6.799925 GGTCAAACAAATGGTTATCTTACGTG 59.200 38.462 0.00 0.00 39.29 4.49
716 717 7.357303 GTCAAACAAATGGTTATCTTACGTGT 58.643 34.615 0.00 0.00 39.29 4.49
717 718 7.322699 GTCAAACAAATGGTTATCTTACGTGTG 59.677 37.037 0.00 0.00 39.29 3.82
718 719 5.873179 ACAAATGGTTATCTTACGTGTGG 57.127 39.130 0.00 0.00 0.00 4.17
719 720 4.698304 ACAAATGGTTATCTTACGTGTGGG 59.302 41.667 0.00 0.00 0.00 4.61
720 721 2.389962 TGGTTATCTTACGTGTGGGC 57.610 50.000 0.00 0.00 0.00 5.36
721 722 1.065998 TGGTTATCTTACGTGTGGGCC 60.066 52.381 0.00 0.00 0.00 5.80
722 723 1.660167 GTTATCTTACGTGTGGGCCC 58.340 55.000 17.59 17.59 0.00 5.80
723 724 0.542805 TTATCTTACGTGTGGGCCCC 59.457 55.000 22.27 11.72 0.00 5.80
724 725 0.618107 TATCTTACGTGTGGGCCCCA 60.618 55.000 22.27 14.62 0.00 4.96
725 726 1.493854 ATCTTACGTGTGGGCCCCAA 61.494 55.000 22.27 3.81 34.18 4.12
726 727 1.969589 CTTACGTGTGGGCCCCAAC 60.970 63.158 22.27 16.80 34.18 3.77
727 728 2.406002 CTTACGTGTGGGCCCCAACT 62.406 60.000 22.27 9.81 34.18 3.16
728 729 2.684192 TTACGTGTGGGCCCCAACTG 62.684 60.000 22.27 15.27 34.18 3.16
729 730 4.579384 CGTGTGGGCCCCAACTGT 62.579 66.667 22.27 0.00 34.18 3.55
730 731 2.597510 GTGTGGGCCCCAACTGTC 60.598 66.667 22.27 3.30 34.18 3.51
731 732 3.099841 TGTGGGCCCCAACTGTCA 61.100 61.111 22.27 0.00 34.18 3.58
732 733 2.440599 GTGGGCCCCAACTGTCAT 59.559 61.111 22.27 0.00 34.18 3.06
733 734 1.136961 TGTGGGCCCCAACTGTCATA 61.137 55.000 22.27 0.00 34.18 2.15
734 735 0.039035 GTGGGCCCCAACTGTCATAA 59.961 55.000 22.27 0.00 34.18 1.90
735 736 1.006813 TGGGCCCCAACTGTCATAAT 58.993 50.000 22.27 0.00 0.00 1.28
736 737 1.064017 TGGGCCCCAACTGTCATAATC 60.064 52.381 22.27 0.00 0.00 1.75
737 738 1.308998 GGCCCCAACTGTCATAATCG 58.691 55.000 0.00 0.00 0.00 3.34
738 739 1.408266 GGCCCCAACTGTCATAATCGT 60.408 52.381 0.00 0.00 0.00 3.73
739 740 1.670811 GCCCCAACTGTCATAATCGTG 59.329 52.381 0.00 0.00 0.00 4.35
740 741 2.679639 GCCCCAACTGTCATAATCGTGA 60.680 50.000 0.00 0.00 0.00 4.35
741 742 3.808728 CCCCAACTGTCATAATCGTGAT 58.191 45.455 0.00 0.00 0.00 3.06
742 743 3.809832 CCCCAACTGTCATAATCGTGATC 59.190 47.826 0.00 0.00 0.00 2.92
743 744 4.441792 CCCAACTGTCATAATCGTGATCA 58.558 43.478 0.00 0.00 0.00 2.92
744 745 4.875536 CCCAACTGTCATAATCGTGATCAA 59.124 41.667 0.00 0.00 0.00 2.57
745 746 5.220662 CCCAACTGTCATAATCGTGATCAAC 60.221 44.000 0.00 0.00 0.00 3.18
746 747 5.582269 CCAACTGTCATAATCGTGATCAACT 59.418 40.000 0.00 0.00 0.00 3.16
747 748 6.456047 CCAACTGTCATAATCGTGATCAACTG 60.456 42.308 0.00 0.00 0.00 3.16
748 749 5.965922 ACTGTCATAATCGTGATCAACTGA 58.034 37.500 0.00 0.00 0.00 3.41
749 750 6.577103 ACTGTCATAATCGTGATCAACTGAT 58.423 36.000 0.00 0.00 37.51 2.90
750 751 7.716612 ACTGTCATAATCGTGATCAACTGATA 58.283 34.615 0.00 0.00 34.37 2.15
751 752 8.197439 ACTGTCATAATCGTGATCAACTGATAA 58.803 33.333 0.00 0.00 34.37 1.75
752 753 9.201127 CTGTCATAATCGTGATCAACTGATAAT 57.799 33.333 0.00 0.00 34.37 1.28
753 754 8.981647 TGTCATAATCGTGATCAACTGATAATG 58.018 33.333 0.00 0.00 34.37 1.90
754 755 9.196552 GTCATAATCGTGATCAACTGATAATGA 57.803 33.333 0.00 2.08 35.85 2.57
755 756 9.196552 TCATAATCGTGATCAACTGATAATGAC 57.803 33.333 0.00 0.00 34.59 3.06
756 757 9.201127 CATAATCGTGATCAACTGATAATGACT 57.799 33.333 0.00 0.00 34.59 3.41
757 758 7.706281 AATCGTGATCAACTGATAATGACTC 57.294 36.000 0.00 0.00 34.59 3.36
758 759 5.273944 TCGTGATCAACTGATAATGACTCG 58.726 41.667 0.00 0.00 34.37 4.18
759 760 4.442403 CGTGATCAACTGATAATGACTCGG 59.558 45.833 0.00 0.00 34.37 4.63
760 761 4.210120 GTGATCAACTGATAATGACTCGGC 59.790 45.833 0.00 0.00 34.37 5.54
761 762 2.809446 TCAACTGATAATGACTCGGCG 58.191 47.619 0.00 0.00 0.00 6.46
762 763 2.165641 TCAACTGATAATGACTCGGCGT 59.834 45.455 6.85 0.00 0.00 5.68
763 764 2.930040 CAACTGATAATGACTCGGCGTT 59.070 45.455 6.85 0.00 0.00 4.84
764 765 3.247006 ACTGATAATGACTCGGCGTTT 57.753 42.857 6.85 0.00 0.00 3.60
765 766 3.596214 ACTGATAATGACTCGGCGTTTT 58.404 40.909 6.85 0.00 0.00 2.43
766 767 3.370978 ACTGATAATGACTCGGCGTTTTG 59.629 43.478 6.85 0.00 0.00 2.44
767 768 2.675844 TGATAATGACTCGGCGTTTTGG 59.324 45.455 6.85 0.00 0.00 3.28
768 769 1.444836 TAATGACTCGGCGTTTTGGG 58.555 50.000 6.85 0.00 0.00 4.12
769 770 0.536460 AATGACTCGGCGTTTTGGGT 60.536 50.000 6.85 0.00 0.00 4.51
770 771 0.536460 ATGACTCGGCGTTTTGGGTT 60.536 50.000 6.85 0.00 0.00 4.11
771 772 0.748729 TGACTCGGCGTTTTGGGTTT 60.749 50.000 6.85 0.00 0.00 3.27
772 773 0.382873 GACTCGGCGTTTTGGGTTTT 59.617 50.000 6.85 0.00 0.00 2.43
773 774 0.818938 ACTCGGCGTTTTGGGTTTTT 59.181 45.000 6.85 0.00 0.00 1.94
788 789 2.510664 TTTTTGAAACAGCCGCCCT 58.489 47.368 0.00 0.00 0.00 5.19
789 790 0.387565 TTTTTGAAACAGCCGCCCTC 59.612 50.000 0.00 0.00 0.00 4.30
790 791 1.791103 TTTTGAAACAGCCGCCCTCG 61.791 55.000 0.00 0.00 0.00 4.63
800 801 2.494918 CGCCCTCGGACTTGGTAG 59.505 66.667 0.00 0.00 0.00 3.18
801 802 2.348888 CGCCCTCGGACTTGGTAGT 61.349 63.158 0.00 0.00 37.31 2.73
802 803 1.885163 CGCCCTCGGACTTGGTAGTT 61.885 60.000 0.00 0.00 33.84 2.24
803 804 1.188863 GCCCTCGGACTTGGTAGTTA 58.811 55.000 0.00 0.00 33.84 2.24
804 805 1.761198 GCCCTCGGACTTGGTAGTTAT 59.239 52.381 0.00 0.00 33.84 1.89
805 806 2.223994 GCCCTCGGACTTGGTAGTTATC 60.224 54.545 0.00 0.00 33.84 1.75
806 807 3.028850 CCCTCGGACTTGGTAGTTATCA 58.971 50.000 0.00 0.00 33.84 2.15
807 808 3.068307 CCCTCGGACTTGGTAGTTATCAG 59.932 52.174 0.00 0.00 33.84 2.90
808 809 3.491104 CCTCGGACTTGGTAGTTATCAGC 60.491 52.174 0.00 0.00 33.84 4.26
809 810 2.098607 TCGGACTTGGTAGTTATCAGCG 59.901 50.000 0.00 0.00 33.84 5.18
810 811 2.098607 CGGACTTGGTAGTTATCAGCGA 59.901 50.000 0.00 0.00 33.84 4.93
811 812 3.428452 CGGACTTGGTAGTTATCAGCGAA 60.428 47.826 0.00 0.00 33.84 4.70
812 813 4.501071 GGACTTGGTAGTTATCAGCGAAA 58.499 43.478 0.00 0.00 33.84 3.46
813 814 4.933400 GGACTTGGTAGTTATCAGCGAAAA 59.067 41.667 0.00 0.00 33.84 2.29
814 815 5.410439 GGACTTGGTAGTTATCAGCGAAAAA 59.590 40.000 0.00 0.00 33.84 1.94
815 816 6.093633 GGACTTGGTAGTTATCAGCGAAAAAT 59.906 38.462 0.00 0.00 33.84 1.82
816 817 7.361799 GGACTTGGTAGTTATCAGCGAAAAATT 60.362 37.037 0.00 0.00 33.84 1.82
817 818 8.556213 ACTTGGTAGTTATCAGCGAAAAATTA 57.444 30.769 0.00 0.00 0.00 1.40
818 819 9.005777 ACTTGGTAGTTATCAGCGAAAAATTAA 57.994 29.630 0.00 0.00 0.00 1.40
819 820 9.834628 CTTGGTAGTTATCAGCGAAAAATTAAA 57.165 29.630 0.00 0.00 0.00 1.52
829 830 9.705290 ATCAGCGAAAAATTAAAATTTGGTAGT 57.295 25.926 1.61 0.00 38.53 2.73
830 831 9.535878 TCAGCGAAAAATTAAAATTTGGTAGTT 57.464 25.926 1.61 0.00 38.53 2.24
857 858 9.816787 TTTTGAAACCCTAACCTGAATTATAGT 57.183 29.630 0.00 0.00 0.00 2.12
860 861 9.275572 TGAAACCCTAACCTGAATTATAGTAGT 57.724 33.333 0.00 0.00 0.00 2.73
890 891 3.577649 TTTACTCTTCTCTCACCAGCG 57.422 47.619 0.00 0.00 0.00 5.18
900 901 3.052082 CACCAGCGCTCCCAGTTG 61.052 66.667 7.13 0.00 0.00 3.16
901 902 3.241530 ACCAGCGCTCCCAGTTGA 61.242 61.111 7.13 0.00 0.00 3.18
902 903 2.435586 CCAGCGCTCCCAGTTGAG 60.436 66.667 7.13 0.00 35.40 3.02
903 904 2.345244 CAGCGCTCCCAGTTGAGT 59.655 61.111 7.13 0.00 34.74 3.41
904 905 1.302033 CAGCGCTCCCAGTTGAGTT 60.302 57.895 7.13 0.00 34.74 3.01
945 946 5.869888 GGAGGTTCATGTAGTAGTTCAGTTG 59.130 44.000 0.00 0.00 0.00 3.16
946 947 5.794894 AGGTTCATGTAGTAGTTCAGTTGG 58.205 41.667 0.00 0.00 0.00 3.77
947 948 4.392138 GGTTCATGTAGTAGTTCAGTTGGC 59.608 45.833 0.00 0.00 0.00 4.52
948 949 4.882842 TCATGTAGTAGTTCAGTTGGCA 57.117 40.909 0.00 0.00 0.00 4.92
949 950 4.566004 TCATGTAGTAGTTCAGTTGGCAC 58.434 43.478 0.00 0.00 0.00 5.01
950 951 4.039852 TCATGTAGTAGTTCAGTTGGCACA 59.960 41.667 0.00 0.00 0.00 4.57
961 963 1.003355 TTGGCACAGCTAGCACTCC 60.003 57.895 18.83 12.38 42.39 3.85
974 976 1.139308 CACTCCTGCTGCGAGAGAG 59.861 63.158 21.18 13.84 0.00 3.20
975 977 1.001517 ACTCCTGCTGCGAGAGAGA 60.002 57.895 21.18 2.35 0.00 3.10
976 978 1.031571 ACTCCTGCTGCGAGAGAGAG 61.032 60.000 21.18 11.83 0.00 3.20
977 979 0.747644 CTCCTGCTGCGAGAGAGAGA 60.748 60.000 11.99 0.00 0.00 3.10
978 980 0.747644 TCCTGCTGCGAGAGAGAGAG 60.748 60.000 0.00 0.00 0.00 3.20
1037 1041 1.009829 GGCCTATCACTCGTGCTTTG 58.990 55.000 0.00 0.00 0.00 2.77
1140 1153 0.825840 AGATACCCAGCGAGCTCCTC 60.826 60.000 8.47 0.00 0.00 3.71
1496 1518 1.101635 GCCAAGAATAACCCCGAGGC 61.102 60.000 0.00 0.00 36.11 4.70
1584 1606 0.108377 TGATGATGCGCAAGTACGGT 60.108 50.000 17.11 0.00 41.68 4.83
1784 1834 2.148365 GCATCGCAAAGACGCTTGC 61.148 57.895 7.26 7.26 46.70 4.01
1849 1899 4.796231 CGCTCCCCAACGACCTCG 62.796 72.222 0.00 0.00 46.33 4.63
1857 1907 0.457166 CCAACGACCTCGCGATAACA 60.457 55.000 10.36 0.00 44.43 2.41
2400 2486 0.840722 ACTTCCGGGACCTGGACATT 60.841 55.000 22.60 6.13 34.56 2.71
2424 2510 4.224274 AACGTGGTGGCGGACGAA 62.224 61.111 9.36 0.00 38.94 3.85
2425 2511 3.736732 AACGTGGTGGCGGACGAAA 62.737 57.895 9.36 0.00 38.94 3.46
2637 2970 7.453393 TGCCAAGAGATCCCATTAATTAGTAG 58.547 38.462 0.00 0.00 0.00 2.57
2670 3009 7.976734 CGATCCTTTTACTACTTCAAGATGACT 59.023 37.037 0.00 0.00 0.00 3.41
2673 3012 9.085645 TCCTTTTACTACTTCAAGATGACTACA 57.914 33.333 0.00 0.00 0.00 2.74
2674 3013 9.360093 CCTTTTACTACTTCAAGATGACTACAG 57.640 37.037 0.00 0.00 0.00 2.74
2675 3014 9.360093 CTTTTACTACTTCAAGATGACTACAGG 57.640 37.037 0.00 0.00 0.00 4.00
2689 3028 0.466189 TACAGGTACGGGTCGGGATC 60.466 60.000 0.00 0.00 0.00 3.36
2701 3040 2.657143 GTCGGGATCAGTCTACTTCCT 58.343 52.381 0.00 0.00 0.00 3.36
2707 3046 4.187694 GGATCAGTCTACTTCCTTTGCTG 58.812 47.826 0.00 0.00 0.00 4.41
2720 3061 8.644374 ACTTCCTTTGCTGTAATAATAAACCA 57.356 30.769 0.00 0.00 0.00 3.67
2721 3062 9.255029 ACTTCCTTTGCTGTAATAATAAACCAT 57.745 29.630 0.00 0.00 0.00 3.55
2724 3065 9.914834 TCCTTTGCTGTAATAATAAACCATACT 57.085 29.630 0.00 0.00 0.00 2.12
2748 3089 7.599245 ACTCTACAAGTTGTATTTTCTCCTTCG 59.401 37.037 15.91 0.82 33.03 3.79
2787 3128 6.039941 CGGTGGAGACATCTTAATTACTCTCT 59.960 42.308 0.00 0.00 46.14 3.10
2789 3130 8.261522 GGTGGAGACATCTTAATTACTCTCTTT 58.738 37.037 0.00 0.00 46.14 2.52
2831 3172 3.119849 ACTTGTATTTGAATGGACTGCGC 60.120 43.478 0.00 0.00 0.00 6.09
2891 3235 2.416747 TGAAAATGACAGTCTCAGGCG 58.583 47.619 1.31 0.00 30.20 5.52
2892 3236 2.037121 TGAAAATGACAGTCTCAGGCGA 59.963 45.455 1.31 0.00 30.20 5.54
2893 3237 2.376808 AAATGACAGTCTCAGGCGAG 57.623 50.000 1.31 0.77 40.98 5.03
2894 3238 1.261480 AATGACAGTCTCAGGCGAGT 58.739 50.000 1.31 0.00 40.44 4.18
2895 3239 2.130272 ATGACAGTCTCAGGCGAGTA 57.870 50.000 1.31 0.00 40.44 2.59
2896 3240 1.454201 TGACAGTCTCAGGCGAGTAG 58.546 55.000 1.31 1.97 40.44 2.57
2910 3254 3.806958 GCGAGTAGCCTGTTTTTGTTAC 58.193 45.455 0.00 0.00 40.81 2.50
2911 3255 3.497262 GCGAGTAGCCTGTTTTTGTTACT 59.503 43.478 0.00 0.00 40.81 2.24
2912 3256 4.377124 GCGAGTAGCCTGTTTTTGTTACTC 60.377 45.833 0.00 0.00 40.81 2.59
2913 3257 5.265407 GAGTAGCCTGTTTTTGTTACTCG 57.735 43.478 0.00 0.00 31.09 4.18
2914 3258 4.700700 AGTAGCCTGTTTTTGTTACTCGT 58.299 39.130 0.00 0.00 0.00 4.18
2915 3259 3.963383 AGCCTGTTTTTGTTACTCGTG 57.037 42.857 0.00 0.00 0.00 4.35
2916 3260 3.275999 AGCCTGTTTTTGTTACTCGTGT 58.724 40.909 0.00 0.00 0.00 4.49
2917 3261 3.064820 AGCCTGTTTTTGTTACTCGTGTG 59.935 43.478 0.00 0.00 0.00 3.82
2918 3262 3.790789 GCCTGTTTTTGTTACTCGTGTGG 60.791 47.826 0.00 0.00 0.00 4.17
2919 3263 3.375922 CCTGTTTTTGTTACTCGTGTGGT 59.624 43.478 0.00 0.00 0.00 4.16
2920 3264 4.339429 CTGTTTTTGTTACTCGTGTGGTG 58.661 43.478 0.00 0.00 0.00 4.17
2921 3265 3.752222 TGTTTTTGTTACTCGTGTGGTGT 59.248 39.130 0.00 0.00 0.00 4.16
2922 3266 4.215827 TGTTTTTGTTACTCGTGTGGTGTT 59.784 37.500 0.00 0.00 0.00 3.32
2923 3267 5.155643 GTTTTTGTTACTCGTGTGGTGTTT 58.844 37.500 0.00 0.00 0.00 2.83
2924 3268 5.373981 TTTTGTTACTCGTGTGGTGTTTT 57.626 34.783 0.00 0.00 0.00 2.43
2925 3269 6.492007 TTTTGTTACTCGTGTGGTGTTTTA 57.508 33.333 0.00 0.00 0.00 1.52
2926 3270 6.680874 TTTGTTACTCGTGTGGTGTTTTAT 57.319 33.333 0.00 0.00 0.00 1.40
2927 3271 7.783090 TTTGTTACTCGTGTGGTGTTTTATA 57.217 32.000 0.00 0.00 0.00 0.98
2928 3272 6.768029 TGTTACTCGTGTGGTGTTTTATAC 57.232 37.500 0.00 0.00 0.00 1.47
2929 3273 6.514947 TGTTACTCGTGTGGTGTTTTATACT 58.485 36.000 0.00 0.00 0.00 2.12
2930 3274 6.642131 TGTTACTCGTGTGGTGTTTTATACTC 59.358 38.462 0.00 0.00 0.00 2.59
2931 3275 4.232221 ACTCGTGTGGTGTTTTATACTCG 58.768 43.478 0.00 0.00 0.00 4.18
2932 3276 4.022935 ACTCGTGTGGTGTTTTATACTCGA 60.023 41.667 0.00 0.00 36.92 4.04
2933 3277 5.063180 TCGTGTGGTGTTTTATACTCGAT 57.937 39.130 0.00 0.00 35.15 3.59
2934 3278 4.860352 TCGTGTGGTGTTTTATACTCGATG 59.140 41.667 0.00 0.00 35.15 3.84
2935 3279 4.860352 CGTGTGGTGTTTTATACTCGATGA 59.140 41.667 0.00 0.00 33.44 2.92
2936 3280 5.004440 CGTGTGGTGTTTTATACTCGATGAG 59.996 44.000 0.00 0.00 33.44 2.90
2937 3281 5.867716 GTGTGGTGTTTTATACTCGATGAGT 59.132 40.000 4.70 4.70 45.54 3.41
2938 3282 5.867174 TGTGGTGTTTTATACTCGATGAGTG 59.133 40.000 9.63 0.00 43.30 3.51
3083 3430 3.577334 TAAACCCTTGGCCCCTGCG 62.577 63.158 0.00 0.00 38.85 5.18
3449 3798 2.169769 CCCCTTCGTTGTAGCCTATCAA 59.830 50.000 0.00 0.00 0.00 2.57
3454 3803 5.503662 TTCGTTGTAGCCTATCAATCGTA 57.496 39.130 0.00 0.00 0.00 3.43
3634 3986 2.163613 AGTGATCGTATCTTGCGTGTCA 59.836 45.455 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 177 4.694233 AGGTGCGCACTCCAGCAG 62.694 66.667 36.84 0.00 44.70 4.24
177 178 4.687215 GAGGTGCGCACTCCAGCA 62.687 66.667 36.84 0.00 41.55 4.41
194 195 4.463879 CCTCACCTGCAGAGGCGG 62.464 72.222 17.39 7.26 45.51 6.13
223 224 4.704833 TCCTCGCCTGCAGTTGCC 62.705 66.667 13.81 0.00 41.18 4.52
224 225 2.669569 TTCCTCGCCTGCAGTTGC 60.670 61.111 13.81 8.99 42.50 4.17
225 226 2.671177 CGTTCCTCGCCTGCAGTTG 61.671 63.158 13.81 4.41 0.00 3.16
226 227 2.357517 CGTTCCTCGCCTGCAGTT 60.358 61.111 13.81 0.00 0.00 3.16
227 228 4.379243 CCGTTCCTCGCCTGCAGT 62.379 66.667 13.81 0.00 38.35 4.40
234 235 4.814294 ATCCACGCCGTTCCTCGC 62.814 66.667 0.00 0.00 38.35 5.03
235 236 2.582498 GATCCACGCCGTTCCTCG 60.582 66.667 0.00 0.00 39.52 4.63
236 237 2.202892 GGATCCACGCCGTTCCTC 60.203 66.667 6.95 0.00 0.00 3.71
237 238 4.143333 CGGATCCACGCCGTTCCT 62.143 66.667 13.41 0.00 43.66 3.36
263 264 4.803426 CTGCCTCGAGTCACGCCC 62.803 72.222 12.31 0.00 42.26 6.13
264 265 4.803426 CCTGCCTCGAGTCACGCC 62.803 72.222 12.31 0.00 42.26 5.68
265 266 4.803426 CCCTGCCTCGAGTCACGC 62.803 72.222 12.31 8.08 42.26 5.34
266 267 4.803426 GCCCTGCCTCGAGTCACG 62.803 72.222 12.31 0.00 44.09 4.35
267 268 3.655810 CTGCCCTGCCTCGAGTCAC 62.656 68.421 12.31 0.83 0.00 3.67
268 269 3.385384 CTGCCCTGCCTCGAGTCA 61.385 66.667 12.31 3.26 0.00 3.41
269 270 4.154347 CCTGCCCTGCCTCGAGTC 62.154 72.222 12.31 0.00 0.00 3.36
371 372 3.123620 GTTGCTCTCCTGCGGCAG 61.124 66.667 22.84 22.84 37.28 4.85
377 378 4.749310 AGCGCCGTTGCTCTCCTG 62.749 66.667 2.29 0.00 42.95 3.86
378 379 4.749310 CAGCGCCGTTGCTCTCCT 62.749 66.667 2.29 0.00 45.23 3.69
416 417 2.887568 GACGCCGTGCATCTCCTG 60.888 66.667 0.00 0.00 0.00 3.86
417 418 2.244117 ATTGACGCCGTGCATCTCCT 62.244 55.000 0.00 0.00 0.00 3.69
418 419 1.766143 GATTGACGCCGTGCATCTCC 61.766 60.000 0.00 0.00 0.00 3.71
419 420 1.638467 GATTGACGCCGTGCATCTC 59.362 57.895 0.00 0.00 0.00 2.75
420 421 1.815421 GGATTGACGCCGTGCATCT 60.815 57.895 0.00 0.00 0.00 2.90
421 422 2.709475 GGATTGACGCCGTGCATC 59.291 61.111 0.00 0.00 0.00 3.91
422 423 3.195002 CGGATTGACGCCGTGCAT 61.195 61.111 0.00 0.00 43.66 3.96
485 486 3.586961 TCGATCCCGAGCGCTCTG 61.587 66.667 32.88 26.83 40.30 3.35
493 494 2.519541 CCAGGAGCTCGATCCCGA 60.520 66.667 7.83 0.00 40.53 5.14
494 495 4.292178 GCCAGGAGCTCGATCCCG 62.292 72.222 7.83 0.00 40.53 5.14
495 496 4.292178 CGCCAGGAGCTCGATCCC 62.292 72.222 7.83 0.00 40.53 3.85
496 497 3.219928 TCGCCAGGAGCTCGATCC 61.220 66.667 7.83 0.00 40.39 3.36
497 498 2.026879 GTCGCCAGGAGCTCGATC 59.973 66.667 7.83 0.00 40.39 3.69
498 499 3.893763 CGTCGCCAGGAGCTCGAT 61.894 66.667 7.83 0.00 40.39 3.59
510 511 4.615834 CTAGAGGAGCCGCGTCGC 62.616 72.222 7.29 7.29 36.53 5.19
511 512 0.949588 TATCTAGAGGAGCCGCGTCG 60.950 60.000 4.92 0.00 36.53 5.12
512 513 0.800012 CTATCTAGAGGAGCCGCGTC 59.200 60.000 4.92 0.00 0.00 5.19
513 514 0.606944 CCTATCTAGAGGAGCCGCGT 60.607 60.000 4.92 0.00 39.15 6.01
514 515 1.309499 CCCTATCTAGAGGAGCCGCG 61.309 65.000 0.00 0.00 39.15 6.46
515 516 0.038455 TCCCTATCTAGAGGAGCCGC 59.962 60.000 0.00 0.00 39.15 6.53
516 517 2.122783 CTCCCTATCTAGAGGAGCCG 57.877 60.000 12.27 0.33 40.75 5.52
522 523 2.310647 GGTCCCTCCTCCCTATCTAGAG 59.689 59.091 0.00 0.00 0.00 2.43
523 524 2.088709 AGGTCCCTCCTCCCTATCTAGA 60.089 54.545 0.00 0.00 44.42 2.43
524 525 2.042433 CAGGTCCCTCCTCCCTATCTAG 59.958 59.091 0.00 0.00 46.24 2.43
525 526 2.074579 CAGGTCCCTCCTCCCTATCTA 58.925 57.143 0.00 0.00 46.24 1.98
526 527 0.863956 CAGGTCCCTCCTCCCTATCT 59.136 60.000 0.00 0.00 46.24 1.98
527 528 0.861155 TCAGGTCCCTCCTCCCTATC 59.139 60.000 0.00 0.00 46.24 2.08
528 529 1.563616 ATCAGGTCCCTCCTCCCTAT 58.436 55.000 0.00 0.00 46.24 2.57
529 530 1.062121 CAATCAGGTCCCTCCTCCCTA 60.062 57.143 0.00 0.00 46.24 3.53
530 531 0.327000 CAATCAGGTCCCTCCTCCCT 60.327 60.000 0.00 0.00 46.24 4.20
531 532 1.988982 GCAATCAGGTCCCTCCTCCC 61.989 65.000 0.00 0.00 46.24 4.30
532 533 0.985490 AGCAATCAGGTCCCTCCTCC 60.985 60.000 0.00 0.00 46.24 4.30
533 534 0.915364 AAGCAATCAGGTCCCTCCTC 59.085 55.000 0.00 0.00 46.24 3.71
535 536 2.222227 AAAAGCAATCAGGTCCCTCC 57.778 50.000 0.00 0.00 0.00 4.30
552 553 7.342284 TCAGGTCCCTACATGTTTTTACAAAAA 59.658 33.333 2.30 0.00 38.53 1.94
553 554 6.834451 TCAGGTCCCTACATGTTTTTACAAAA 59.166 34.615 2.30 0.00 38.53 2.44
554 555 6.366340 TCAGGTCCCTACATGTTTTTACAAA 58.634 36.000 2.30 0.00 38.53 2.83
555 556 5.942961 TCAGGTCCCTACATGTTTTTACAA 58.057 37.500 2.30 0.00 38.53 2.41
556 557 5.570205 TCAGGTCCCTACATGTTTTTACA 57.430 39.130 2.30 0.00 38.53 2.41
557 558 6.657541 TCAATCAGGTCCCTACATGTTTTTAC 59.342 38.462 2.30 0.00 38.53 2.01
558 559 6.785076 TCAATCAGGTCCCTACATGTTTTTA 58.215 36.000 2.30 0.00 38.53 1.52
559 560 5.640147 TCAATCAGGTCCCTACATGTTTTT 58.360 37.500 2.30 0.00 38.53 1.94
560 561 5.255397 TCAATCAGGTCCCTACATGTTTT 57.745 39.130 2.30 0.00 38.53 2.43
561 562 4.927267 TCAATCAGGTCCCTACATGTTT 57.073 40.909 2.30 0.00 38.53 2.83
562 563 4.927267 TTCAATCAGGTCCCTACATGTT 57.073 40.909 2.30 0.00 38.53 2.71
563 564 4.927267 TTTCAATCAGGTCCCTACATGT 57.073 40.909 2.69 2.69 38.53 3.21
564 565 5.256474 AGTTTTCAATCAGGTCCCTACATG 58.744 41.667 0.00 0.00 38.76 3.21
565 566 5.014123 TGAGTTTTCAATCAGGTCCCTACAT 59.986 40.000 0.00 0.00 0.00 2.29
566 567 4.349636 TGAGTTTTCAATCAGGTCCCTACA 59.650 41.667 0.00 0.00 0.00 2.74
567 568 4.906618 TGAGTTTTCAATCAGGTCCCTAC 58.093 43.478 0.00 0.00 0.00 3.18
568 569 4.844085 TCTGAGTTTTCAATCAGGTCCCTA 59.156 41.667 2.63 0.00 42.62 3.53
569 570 3.652869 TCTGAGTTTTCAATCAGGTCCCT 59.347 43.478 2.63 0.00 42.62 4.20
570 571 4.006319 CTCTGAGTTTTCAATCAGGTCCC 58.994 47.826 0.00 0.00 42.62 4.46
571 572 4.006319 CCTCTGAGTTTTCAATCAGGTCC 58.994 47.826 3.66 0.00 42.62 4.46
572 573 4.006319 CCCTCTGAGTTTTCAATCAGGTC 58.994 47.826 3.66 0.00 42.62 3.85
573 574 3.652869 TCCCTCTGAGTTTTCAATCAGGT 59.347 43.478 3.66 0.00 42.62 4.00
574 575 4.006319 GTCCCTCTGAGTTTTCAATCAGG 58.994 47.826 3.66 0.00 42.62 3.86
575 576 4.006319 GGTCCCTCTGAGTTTTCAATCAG 58.994 47.826 3.66 0.00 43.53 2.90
576 577 3.652869 AGGTCCCTCTGAGTTTTCAATCA 59.347 43.478 3.66 0.00 31.69 2.57
577 578 4.006319 CAGGTCCCTCTGAGTTTTCAATC 58.994 47.826 3.66 0.00 36.93 2.67
578 579 3.652869 TCAGGTCCCTCTGAGTTTTCAAT 59.347 43.478 3.66 0.00 38.70 2.57
579 580 3.045634 TCAGGTCCCTCTGAGTTTTCAA 58.954 45.455 3.66 0.00 38.70 2.69
580 581 2.689658 TCAGGTCCCTCTGAGTTTTCA 58.310 47.619 3.66 0.00 38.70 2.69
581 582 3.990959 ATCAGGTCCCTCTGAGTTTTC 57.009 47.619 3.66 0.00 45.60 2.29
582 583 3.812167 GCAATCAGGTCCCTCTGAGTTTT 60.812 47.826 3.66 0.00 45.60 2.43
583 584 2.290577 GCAATCAGGTCCCTCTGAGTTT 60.291 50.000 3.66 0.00 45.60 2.66
584 585 1.280421 GCAATCAGGTCCCTCTGAGTT 59.720 52.381 3.66 0.00 45.60 3.01
585 586 0.908198 GCAATCAGGTCCCTCTGAGT 59.092 55.000 3.66 0.00 45.60 3.41
586 587 1.202330 AGCAATCAGGTCCCTCTGAG 58.798 55.000 0.00 0.00 45.60 3.35
587 588 1.661463 AAGCAATCAGGTCCCTCTGA 58.339 50.000 0.00 0.00 46.32 3.27
588 589 2.503895 AAAGCAATCAGGTCCCTCTG 57.496 50.000 0.00 0.00 36.17 3.35
589 590 3.532641 AAAAAGCAATCAGGTCCCTCT 57.467 42.857 0.00 0.00 0.00 3.69
606 607 7.291566 TCAGGTCCCTGTATGTTTTCTAAAAA 58.708 34.615 12.88 0.00 43.96 1.94
607 608 6.843752 TCAGGTCCCTGTATGTTTTCTAAAA 58.156 36.000 12.88 0.00 43.96 1.52
608 609 6.442541 TCAGGTCCCTGTATGTTTTCTAAA 57.557 37.500 12.88 0.00 43.96 1.85
609 610 6.636454 ATCAGGTCCCTGTATGTTTTCTAA 57.364 37.500 12.88 0.00 43.96 2.10
610 611 6.636454 AATCAGGTCCCTGTATGTTTTCTA 57.364 37.500 12.88 0.00 43.96 2.10
611 612 5.520748 AATCAGGTCCCTGTATGTTTTCT 57.479 39.130 12.88 0.00 43.96 2.52
612 613 6.415573 AGTAATCAGGTCCCTGTATGTTTTC 58.584 40.000 12.88 0.70 43.96 2.29
613 614 6.388619 AGTAATCAGGTCCCTGTATGTTTT 57.611 37.500 12.88 2.65 43.96 2.43
614 615 6.388619 AAGTAATCAGGTCCCTGTATGTTT 57.611 37.500 12.88 2.23 43.96 2.83
615 616 6.388619 AAAGTAATCAGGTCCCTGTATGTT 57.611 37.500 12.88 7.09 43.96 2.71
616 617 6.388619 AAAAGTAATCAGGTCCCTGTATGT 57.611 37.500 12.88 0.74 43.96 2.29
617 618 8.265055 TCTAAAAAGTAATCAGGTCCCTGTATG 58.735 37.037 12.88 0.00 43.96 2.39
618 619 8.388656 TCTAAAAAGTAATCAGGTCCCTGTAT 57.611 34.615 12.88 6.13 43.96 2.29
619 620 7.801893 TCTAAAAAGTAATCAGGTCCCTGTA 57.198 36.000 12.88 1.17 43.96 2.74
620 621 6.697641 TCTAAAAAGTAATCAGGTCCCTGT 57.302 37.500 12.88 0.00 43.96 4.00
621 622 7.996098 TTTCTAAAAAGTAATCAGGTCCCTG 57.004 36.000 7.02 7.02 44.86 4.45
622 623 8.225416 AGTTTTCTAAAAAGTAATCAGGTCCCT 58.775 33.333 0.00 0.00 0.00 4.20
623 624 8.405418 AGTTTTCTAAAAAGTAATCAGGTCCC 57.595 34.615 0.00 0.00 0.00 4.46
632 633 8.905850 CCCACCTGTAAGTTTTCTAAAAAGTAA 58.094 33.333 0.00 0.00 0.00 2.24
633 634 8.273605 TCCCACCTGTAAGTTTTCTAAAAAGTA 58.726 33.333 0.00 0.00 0.00 2.24
634 635 7.067859 GTCCCACCTGTAAGTTTTCTAAAAAGT 59.932 37.037 0.00 0.00 0.00 2.66
635 636 7.423199 GTCCCACCTGTAAGTTTTCTAAAAAG 58.577 38.462 0.00 0.00 0.00 2.27
636 637 6.321945 GGTCCCACCTGTAAGTTTTCTAAAAA 59.678 38.462 0.00 0.00 34.73 1.94
637 638 5.829391 GGTCCCACCTGTAAGTTTTCTAAAA 59.171 40.000 0.00 0.00 34.73 1.52
638 639 5.379187 GGTCCCACCTGTAAGTTTTCTAAA 58.621 41.667 0.00 0.00 34.73 1.85
639 640 4.202493 GGGTCCCACCTGTAAGTTTTCTAA 60.202 45.833 1.78 0.00 38.64 2.10
640 641 3.328637 GGGTCCCACCTGTAAGTTTTCTA 59.671 47.826 1.78 0.00 38.64 2.10
641 642 2.107726 GGGTCCCACCTGTAAGTTTTCT 59.892 50.000 1.78 0.00 38.64 2.52
642 643 2.158579 TGGGTCCCACCTGTAAGTTTTC 60.159 50.000 6.47 0.00 38.64 2.29
643 644 1.854280 TGGGTCCCACCTGTAAGTTTT 59.146 47.619 6.47 0.00 38.64 2.43
644 645 1.525175 TGGGTCCCACCTGTAAGTTT 58.475 50.000 6.47 0.00 38.64 2.66
645 646 3.267916 TGGGTCCCACCTGTAAGTT 57.732 52.632 6.47 0.00 38.64 2.66
655 656 3.557475 CGTTAACTTACATGTGGGTCCCA 60.557 47.826 6.47 6.47 0.00 4.37
656 657 3.004862 CGTTAACTTACATGTGGGTCCC 58.995 50.000 9.11 0.00 0.00 4.46
657 658 3.004862 CCGTTAACTTACATGTGGGTCC 58.995 50.000 9.11 0.00 0.00 4.46
658 659 3.667360 ACCGTTAACTTACATGTGGGTC 58.333 45.455 9.11 0.00 0.00 4.46
659 660 3.071312 TGACCGTTAACTTACATGTGGGT 59.929 43.478 9.11 4.09 0.00 4.51
660 661 3.666274 TGACCGTTAACTTACATGTGGG 58.334 45.455 9.11 3.41 0.00 4.61
661 662 5.237779 ACTTTGACCGTTAACTTACATGTGG 59.762 40.000 9.11 3.79 0.00 4.17
662 663 6.295039 ACTTTGACCGTTAACTTACATGTG 57.705 37.500 9.11 0.00 0.00 3.21
663 664 8.436046 TTTACTTTGACCGTTAACTTACATGT 57.564 30.769 2.69 2.69 0.00 3.21
664 665 9.325150 CATTTACTTTGACCGTTAACTTACATG 57.675 33.333 3.71 0.00 0.00 3.21
665 666 8.508875 CCATTTACTTTGACCGTTAACTTACAT 58.491 33.333 3.71 0.00 0.00 2.29
666 667 7.498570 ACCATTTACTTTGACCGTTAACTTACA 59.501 33.333 3.71 0.00 0.00 2.41
667 668 7.864686 ACCATTTACTTTGACCGTTAACTTAC 58.135 34.615 3.71 0.00 0.00 2.34
668 669 7.714377 TGACCATTTACTTTGACCGTTAACTTA 59.286 33.333 3.71 0.00 0.00 2.24
669 670 6.543100 TGACCATTTACTTTGACCGTTAACTT 59.457 34.615 3.71 0.00 0.00 2.66
670 671 6.056884 TGACCATTTACTTTGACCGTTAACT 58.943 36.000 3.71 0.00 0.00 2.24
671 672 6.303021 TGACCATTTACTTTGACCGTTAAC 57.697 37.500 0.00 0.00 0.00 2.01
672 673 6.939132 TTGACCATTTACTTTGACCGTTAA 57.061 33.333 0.00 0.00 0.00 2.01
673 674 6.318144 TGTTTGACCATTTACTTTGACCGTTA 59.682 34.615 0.00 0.00 0.00 3.18
674 675 5.125739 TGTTTGACCATTTACTTTGACCGTT 59.874 36.000 0.00 0.00 0.00 4.44
675 676 4.641094 TGTTTGACCATTTACTTTGACCGT 59.359 37.500 0.00 0.00 0.00 4.83
676 677 5.176407 TGTTTGACCATTTACTTTGACCG 57.824 39.130 0.00 0.00 0.00 4.79
677 678 7.042119 CCATTTGTTTGACCATTTACTTTGACC 60.042 37.037 0.00 0.00 0.00 4.02
678 679 7.494298 ACCATTTGTTTGACCATTTACTTTGAC 59.506 33.333 0.00 0.00 0.00 3.18
679 680 7.560368 ACCATTTGTTTGACCATTTACTTTGA 58.440 30.769 0.00 0.00 0.00 2.69
680 681 7.784633 ACCATTTGTTTGACCATTTACTTTG 57.215 32.000 0.00 0.00 0.00 2.77
682 683 9.705290 GATAACCATTTGTTTGACCATTTACTT 57.295 29.630 0.00 0.00 38.42 2.24
683 684 9.088987 AGATAACCATTTGTTTGACCATTTACT 57.911 29.630 0.00 0.00 38.42 2.24
684 685 9.705290 AAGATAACCATTTGTTTGACCATTTAC 57.295 29.630 0.00 0.00 38.42 2.01
686 687 9.705290 GTAAGATAACCATTTGTTTGACCATTT 57.295 29.630 0.00 0.00 38.42 2.32
687 688 8.026607 CGTAAGATAACCATTTGTTTGACCATT 58.973 33.333 0.00 0.00 37.81 3.16
688 689 7.175990 ACGTAAGATAACCATTTGTTTGACCAT 59.824 33.333 0.00 0.00 38.59 3.55
689 690 6.487331 ACGTAAGATAACCATTTGTTTGACCA 59.513 34.615 0.00 0.00 38.59 4.02
690 691 6.799925 CACGTAAGATAACCATTTGTTTGACC 59.200 38.462 0.00 0.00 38.59 4.02
691 692 7.322699 CACACGTAAGATAACCATTTGTTTGAC 59.677 37.037 0.00 0.00 38.59 3.18
692 693 7.356540 CACACGTAAGATAACCATTTGTTTGA 58.643 34.615 0.00 0.00 38.59 2.69
693 694 6.580791 CCACACGTAAGATAACCATTTGTTTG 59.419 38.462 0.00 0.00 38.59 2.93
694 695 6.294286 CCCACACGTAAGATAACCATTTGTTT 60.294 38.462 0.00 0.00 38.59 2.83
695 696 5.182380 CCCACACGTAAGATAACCATTTGTT 59.818 40.000 0.00 0.00 40.30 2.83
696 697 4.698304 CCCACACGTAAGATAACCATTTGT 59.302 41.667 0.00 0.00 43.62 2.83
697 698 4.438200 GCCCACACGTAAGATAACCATTTG 60.438 45.833 0.00 0.00 43.62 2.32
698 699 3.692593 GCCCACACGTAAGATAACCATTT 59.307 43.478 0.00 0.00 43.62 2.32
699 700 3.275999 GCCCACACGTAAGATAACCATT 58.724 45.455 0.00 0.00 43.62 3.16
700 701 2.420967 GGCCCACACGTAAGATAACCAT 60.421 50.000 0.00 0.00 43.62 3.55
701 702 1.065998 GGCCCACACGTAAGATAACCA 60.066 52.381 0.00 0.00 43.62 3.67
702 703 1.660167 GGCCCACACGTAAGATAACC 58.340 55.000 0.00 0.00 43.62 2.85
703 704 1.660167 GGGCCCACACGTAAGATAAC 58.340 55.000 19.95 0.00 43.62 1.89
704 705 0.542805 GGGGCCCACACGTAAGATAA 59.457 55.000 26.86 0.00 43.62 1.75
705 706 0.618107 TGGGGCCCACACGTAAGATA 60.618 55.000 24.76 0.00 43.62 1.98
706 707 1.493854 TTGGGGCCCACACGTAAGAT 61.494 55.000 28.84 0.00 34.98 2.40
707 708 2.148052 TTGGGGCCCACACGTAAGA 61.148 57.895 28.84 4.60 34.98 2.10
708 709 1.969589 GTTGGGGCCCACACGTAAG 60.970 63.158 28.84 0.00 36.78 2.34
709 710 2.113562 GTTGGGGCCCACACGTAA 59.886 61.111 28.84 6.50 30.78 3.18
710 711 2.850130 AGTTGGGGCCCACACGTA 60.850 61.111 28.84 7.45 30.78 3.57
711 712 4.579384 CAGTTGGGGCCCACACGT 62.579 66.667 28.84 7.09 30.78 4.49
712 713 4.579384 ACAGTTGGGGCCCACACG 62.579 66.667 28.84 18.68 30.78 4.49
713 714 2.597510 GACAGTTGGGGCCCACAC 60.598 66.667 28.84 24.89 30.78 3.82
714 715 1.136961 TATGACAGTTGGGGCCCACA 61.137 55.000 28.84 20.59 30.78 4.17
715 716 0.039035 TTATGACAGTTGGGGCCCAC 59.961 55.000 28.84 20.44 30.78 4.61
716 717 1.006813 ATTATGACAGTTGGGGCCCA 58.993 50.000 24.76 24.76 0.00 5.36
717 718 1.692411 GATTATGACAGTTGGGGCCC 58.308 55.000 18.17 18.17 0.00 5.80
718 719 1.308998 CGATTATGACAGTTGGGGCC 58.691 55.000 0.00 0.00 0.00 5.80
719 720 1.670811 CACGATTATGACAGTTGGGGC 59.329 52.381 0.00 0.00 0.00 5.80
720 721 3.260475 TCACGATTATGACAGTTGGGG 57.740 47.619 0.00 0.00 0.00 4.96
721 722 4.441792 TGATCACGATTATGACAGTTGGG 58.558 43.478 0.00 0.00 0.00 4.12
722 723 5.582269 AGTTGATCACGATTATGACAGTTGG 59.418 40.000 0.00 0.00 0.00 3.77
723 724 6.311200 TCAGTTGATCACGATTATGACAGTTG 59.689 38.462 0.00 0.00 0.00 3.16
724 725 6.398095 TCAGTTGATCACGATTATGACAGTT 58.602 36.000 0.00 0.00 0.00 3.16
725 726 5.965922 TCAGTTGATCACGATTATGACAGT 58.034 37.500 0.00 0.00 0.00 3.55
726 727 8.579682 TTATCAGTTGATCACGATTATGACAG 57.420 34.615 0.00 0.00 36.05 3.51
727 728 8.981647 CATTATCAGTTGATCACGATTATGACA 58.018 33.333 15.97 0.00 32.81 3.58
728 729 9.196552 TCATTATCAGTTGATCACGATTATGAC 57.803 33.333 17.95 4.80 33.95 3.06
729 730 9.196552 GTCATTATCAGTTGATCACGATTATGA 57.803 33.333 17.95 17.95 35.06 2.15
730 731 9.201127 AGTCATTATCAGTTGATCACGATTATG 57.799 33.333 15.35 15.35 36.05 1.90
731 732 9.416794 GAGTCATTATCAGTTGATCACGATTAT 57.583 33.333 0.00 0.00 36.05 1.28
732 733 7.591426 CGAGTCATTATCAGTTGATCACGATTA 59.409 37.037 0.00 0.00 36.05 1.75
733 734 6.419116 CGAGTCATTATCAGTTGATCACGATT 59.581 38.462 0.00 0.00 36.05 3.34
734 735 5.917447 CGAGTCATTATCAGTTGATCACGAT 59.083 40.000 0.00 0.62 36.05 3.73
735 736 5.273944 CGAGTCATTATCAGTTGATCACGA 58.726 41.667 0.00 0.00 36.05 4.35
736 737 4.442403 CCGAGTCATTATCAGTTGATCACG 59.558 45.833 0.00 0.00 36.05 4.35
737 738 4.210120 GCCGAGTCATTATCAGTTGATCAC 59.790 45.833 0.00 0.00 36.05 3.06
738 739 4.371786 GCCGAGTCATTATCAGTTGATCA 58.628 43.478 0.00 0.00 36.05 2.92
739 740 3.426859 CGCCGAGTCATTATCAGTTGATC 59.573 47.826 0.00 0.00 36.05 2.92
740 741 3.181475 ACGCCGAGTCATTATCAGTTGAT 60.181 43.478 0.00 0.00 38.51 2.57
741 742 2.165641 ACGCCGAGTCATTATCAGTTGA 59.834 45.455 0.00 0.00 0.00 3.18
742 743 2.540515 ACGCCGAGTCATTATCAGTTG 58.459 47.619 0.00 0.00 0.00 3.16
743 744 2.961526 ACGCCGAGTCATTATCAGTT 57.038 45.000 0.00 0.00 0.00 3.16
744 745 2.961526 AACGCCGAGTCATTATCAGT 57.038 45.000 0.00 0.00 0.00 3.41
745 746 3.242413 CCAAAACGCCGAGTCATTATCAG 60.242 47.826 0.00 0.00 0.00 2.90
746 747 2.675844 CCAAAACGCCGAGTCATTATCA 59.324 45.455 0.00 0.00 0.00 2.15
747 748 2.031683 CCCAAAACGCCGAGTCATTATC 59.968 50.000 0.00 0.00 0.00 1.75
748 749 2.014128 CCCAAAACGCCGAGTCATTAT 58.986 47.619 0.00 0.00 0.00 1.28
749 750 1.270947 ACCCAAAACGCCGAGTCATTA 60.271 47.619 0.00 0.00 0.00 1.90
750 751 0.536460 ACCCAAAACGCCGAGTCATT 60.536 50.000 0.00 0.00 0.00 2.57
751 752 0.536460 AACCCAAAACGCCGAGTCAT 60.536 50.000 0.00 0.00 0.00 3.06
752 753 0.748729 AAACCCAAAACGCCGAGTCA 60.749 50.000 0.00 0.00 0.00 3.41
753 754 0.382873 AAAACCCAAAACGCCGAGTC 59.617 50.000 0.00 0.00 0.00 3.36
754 755 0.818938 AAAAACCCAAAACGCCGAGT 59.181 45.000 0.00 0.00 0.00 4.18
755 756 3.652292 AAAAACCCAAAACGCCGAG 57.348 47.368 0.00 0.00 0.00 4.63
770 771 0.387565 GAGGGCGGCTGTTTCAAAAA 59.612 50.000 9.56 0.00 0.00 1.94
771 772 1.791103 CGAGGGCGGCTGTTTCAAAA 61.791 55.000 9.56 0.00 0.00 2.44
772 773 2.258013 CGAGGGCGGCTGTTTCAAA 61.258 57.895 9.56 0.00 0.00 2.69
773 774 2.668212 CGAGGGCGGCTGTTTCAA 60.668 61.111 9.56 0.00 0.00 2.69
783 784 1.885163 AACTACCAAGTCCGAGGGCG 61.885 60.000 0.00 0.00 33.75 6.13
784 785 1.188863 TAACTACCAAGTCCGAGGGC 58.811 55.000 0.00 0.00 33.75 5.19
785 786 3.028850 TGATAACTACCAAGTCCGAGGG 58.971 50.000 0.00 0.00 33.75 4.30
786 787 3.491104 GCTGATAACTACCAAGTCCGAGG 60.491 52.174 0.00 0.00 33.75 4.63
787 788 3.707793 GCTGATAACTACCAAGTCCGAG 58.292 50.000 0.00 0.00 33.75 4.63
788 789 2.098607 CGCTGATAACTACCAAGTCCGA 59.901 50.000 0.00 0.00 33.75 4.55
789 790 2.098607 TCGCTGATAACTACCAAGTCCG 59.901 50.000 0.00 0.00 33.75 4.79
790 791 3.795623 TCGCTGATAACTACCAAGTCC 57.204 47.619 0.00 0.00 33.75 3.85
791 792 6.476243 TTTTTCGCTGATAACTACCAAGTC 57.524 37.500 0.00 0.00 33.75 3.01
792 793 7.448748 AATTTTTCGCTGATAACTACCAAGT 57.551 32.000 0.00 0.00 37.65 3.16
793 794 9.834628 TTTAATTTTTCGCTGATAACTACCAAG 57.165 29.630 0.00 0.00 0.00 3.61
803 804 9.705290 ACTACCAAATTTTAATTTTTCGCTGAT 57.295 25.926 0.00 0.00 36.52 2.90
804 805 9.535878 AACTACCAAATTTTAATTTTTCGCTGA 57.464 25.926 0.00 0.00 36.52 4.26
831 832 9.816787 ACTATAATTCAGGTTAGGGTTTCAAAA 57.183 29.630 0.00 0.00 0.00 2.44
834 835 9.275572 ACTACTATAATTCAGGTTAGGGTTTCA 57.724 33.333 0.00 0.00 0.00 2.69
860 861 9.601217 GGTGAGAGAAGAGTAAATAGCATAAAA 57.399 33.333 0.00 0.00 0.00 1.52
861 862 8.758829 TGGTGAGAGAAGAGTAAATAGCATAAA 58.241 33.333 0.00 0.00 0.00 1.40
862 863 8.306313 TGGTGAGAGAAGAGTAAATAGCATAA 57.694 34.615 0.00 0.00 0.00 1.90
863 864 7.470702 GCTGGTGAGAGAAGAGTAAATAGCATA 60.471 40.741 0.00 0.00 0.00 3.14
864 865 6.685116 GCTGGTGAGAGAAGAGTAAATAGCAT 60.685 42.308 0.00 0.00 0.00 3.79
865 866 5.394663 GCTGGTGAGAGAAGAGTAAATAGCA 60.395 44.000 0.00 0.00 0.00 3.49
866 867 5.047188 GCTGGTGAGAGAAGAGTAAATAGC 58.953 45.833 0.00 0.00 0.00 2.97
867 868 5.277825 CGCTGGTGAGAGAAGAGTAAATAG 58.722 45.833 0.00 0.00 0.00 1.73
868 869 4.440250 GCGCTGGTGAGAGAAGAGTAAATA 60.440 45.833 0.00 0.00 0.00 1.40
869 870 3.677424 GCGCTGGTGAGAGAAGAGTAAAT 60.677 47.826 0.00 0.00 0.00 1.40
870 871 2.352814 GCGCTGGTGAGAGAAGAGTAAA 60.353 50.000 0.00 0.00 0.00 2.01
871 872 1.202582 GCGCTGGTGAGAGAAGAGTAA 59.797 52.381 0.00 0.00 0.00 2.24
872 873 0.811915 GCGCTGGTGAGAGAAGAGTA 59.188 55.000 0.00 0.00 0.00 2.59
873 874 0.897863 AGCGCTGGTGAGAGAAGAGT 60.898 55.000 10.39 0.00 0.00 3.24
874 875 0.179140 GAGCGCTGGTGAGAGAAGAG 60.179 60.000 18.48 0.00 0.00 2.85
875 876 1.599606 GGAGCGCTGGTGAGAGAAGA 61.600 60.000 18.48 0.00 0.00 2.87
876 877 1.153667 GGAGCGCTGGTGAGAGAAG 60.154 63.158 18.48 0.00 0.00 2.85
877 878 2.650116 GGGAGCGCTGGTGAGAGAA 61.650 63.158 18.48 0.00 0.00 2.87
878 879 3.071206 GGGAGCGCTGGTGAGAGA 61.071 66.667 18.48 0.00 0.00 3.10
890 891 5.246307 AGTTACATTAACTCAACTGGGAGC 58.754 41.667 0.00 0.00 45.38 4.70
938 939 0.108396 TGCTAGCTGTGCCAACTGAA 59.892 50.000 17.23 0.00 0.00 3.02
945 946 1.449246 CAGGAGTGCTAGCTGTGCC 60.449 63.158 17.23 11.78 0.00 5.01
946 947 4.198625 CAGGAGTGCTAGCTGTGC 57.801 61.111 17.23 8.26 0.00 4.57
961 963 0.659427 CTCTCTCTCTCTCGCAGCAG 59.341 60.000 0.00 0.00 0.00 4.24
1008 1012 3.561143 GAGTGATAGGCCTCTGAGAAGA 58.439 50.000 9.68 0.00 0.00 2.87
1009 1013 2.293122 CGAGTGATAGGCCTCTGAGAAG 59.707 54.545 9.68 0.00 0.00 2.85
1010 1014 2.302260 CGAGTGATAGGCCTCTGAGAA 58.698 52.381 9.68 0.00 0.00 2.87
1011 1015 1.213182 ACGAGTGATAGGCCTCTGAGA 59.787 52.381 9.68 0.00 0.00 3.27
1037 1041 1.346068 AGCCTGAGAAGAAGGTGACAC 59.654 52.381 0.00 0.00 37.13 3.67
1140 1153 2.325082 GGCGTTGCACTGGGTGTAG 61.325 63.158 0.00 0.00 35.75 2.74
1366 1385 2.202676 GTCGAGCAGGCCGAAGAG 60.203 66.667 0.00 0.00 37.81 2.85
1584 1606 2.690497 GAGGATGTTGTCGATGGAGAGA 59.310 50.000 0.00 0.00 0.00 3.10
1849 1899 1.783711 CGAGAGCATCACTGTTATCGC 59.216 52.381 0.00 0.00 39.74 4.58
1857 1907 2.685017 TGCCCCGAGAGCATCACT 60.685 61.111 0.00 0.00 37.82 3.41
2136 2210 2.484264 GGTGAACCAGGAAAAGATGTCG 59.516 50.000 0.00 0.00 35.64 4.35
2400 2486 4.947147 GCCACCACGTTCTGGCCA 62.947 66.667 18.84 4.71 46.38 5.36
2424 2510 0.179145 CGCTCTCGGACGTGGTAATT 60.179 55.000 0.00 0.00 0.00 1.40
2425 2511 1.432251 CGCTCTCGGACGTGGTAAT 59.568 57.895 0.00 0.00 0.00 1.89
2670 3009 0.466189 GATCCCGACCCGTACCTGTA 60.466 60.000 0.00 0.00 0.00 2.74
2671 3010 1.755783 GATCCCGACCCGTACCTGT 60.756 63.158 0.00 0.00 0.00 4.00
2672 3011 1.735376 CTGATCCCGACCCGTACCTG 61.735 65.000 0.00 0.00 0.00 4.00
2673 3012 1.455217 CTGATCCCGACCCGTACCT 60.455 63.158 0.00 0.00 0.00 3.08
2674 3013 1.732417 GACTGATCCCGACCCGTACC 61.732 65.000 0.00 0.00 0.00 3.34
2675 3014 0.750911 AGACTGATCCCGACCCGTAC 60.751 60.000 0.00 0.00 0.00 3.67
2689 3028 8.723942 ATTATTACAGCAAAGGAAGTAGACTG 57.276 34.615 0.00 0.00 0.00 3.51
2717 3058 9.654663 GAGAAAATACAACTTGTAGAGTATGGT 57.345 33.333 7.67 0.00 37.72 3.55
2719 3060 9.877178 AGGAGAAAATACAACTTGTAGAGTATG 57.123 33.333 7.67 0.00 37.72 2.39
2721 3062 9.924650 GAAGGAGAAAATACAACTTGTAGAGTA 57.075 33.333 7.67 0.00 37.72 2.59
2722 3063 7.599245 CGAAGGAGAAAATACAACTTGTAGAGT 59.401 37.037 7.67 0.00 41.47 3.24
2723 3064 7.412020 GCGAAGGAGAAAATACAACTTGTAGAG 60.412 40.741 7.67 0.00 36.14 2.43
2724 3065 6.367969 GCGAAGGAGAAAATACAACTTGTAGA 59.632 38.462 7.67 0.00 36.14 2.59
2725 3066 6.534934 GCGAAGGAGAAAATACAACTTGTAG 58.465 40.000 7.67 0.00 36.14 2.74
2748 3089 2.125912 ACCGAGCAGTCATCACGC 60.126 61.111 0.00 0.00 0.00 5.34
2810 3151 3.127548 AGCGCAGTCCATTCAAATACAAG 59.872 43.478 11.47 0.00 0.00 3.16
2831 3172 3.746940 TCCACATCATCACCATGCATAG 58.253 45.455 0.00 0.00 0.00 2.23
2891 3235 4.748600 ACGAGTAACAAAAACAGGCTACTC 59.251 41.667 0.00 0.00 34.50 2.59
2892 3236 4.510340 CACGAGTAACAAAAACAGGCTACT 59.490 41.667 0.00 0.00 0.00 2.57
2893 3237 4.271776 ACACGAGTAACAAAAACAGGCTAC 59.728 41.667 0.00 0.00 0.00 3.58
2894 3238 4.271533 CACACGAGTAACAAAAACAGGCTA 59.728 41.667 0.00 0.00 0.00 3.93
2895 3239 3.064820 CACACGAGTAACAAAAACAGGCT 59.935 43.478 0.00 0.00 0.00 4.58
2896 3240 3.359654 CACACGAGTAACAAAAACAGGC 58.640 45.455 0.00 0.00 0.00 4.85
2897 3241 3.375922 ACCACACGAGTAACAAAAACAGG 59.624 43.478 0.00 0.00 0.00 4.00
2898 3242 4.142773 ACACCACACGAGTAACAAAAACAG 60.143 41.667 0.00 0.00 0.00 3.16
2899 3243 3.752222 ACACCACACGAGTAACAAAAACA 59.248 39.130 0.00 0.00 0.00 2.83
2900 3244 4.345271 ACACCACACGAGTAACAAAAAC 57.655 40.909 0.00 0.00 0.00 2.43
2901 3245 5.373981 AAACACCACACGAGTAACAAAAA 57.626 34.783 0.00 0.00 0.00 1.94
2902 3246 5.373981 AAAACACCACACGAGTAACAAAA 57.626 34.783 0.00 0.00 0.00 2.44
2903 3247 6.680874 ATAAAACACCACACGAGTAACAAA 57.319 33.333 0.00 0.00 0.00 2.83
2904 3248 6.985645 AGTATAAAACACCACACGAGTAACAA 59.014 34.615 0.00 0.00 0.00 2.83
2905 3249 6.514947 AGTATAAAACACCACACGAGTAACA 58.485 36.000 0.00 0.00 0.00 2.41
2906 3250 6.183359 CGAGTATAAAACACCACACGAGTAAC 60.183 42.308 0.00 0.00 0.00 2.50
2907 3251 5.858049 CGAGTATAAAACACCACACGAGTAA 59.142 40.000 0.00 0.00 0.00 2.24
2908 3252 5.181056 TCGAGTATAAAACACCACACGAGTA 59.819 40.000 0.00 0.00 31.90 2.59
2909 3253 4.022935 TCGAGTATAAAACACCACACGAGT 60.023 41.667 0.00 0.00 31.90 4.18
2910 3254 4.478699 TCGAGTATAAAACACCACACGAG 58.521 43.478 0.00 0.00 31.90 4.18
2911 3255 4.502171 TCGAGTATAAAACACCACACGA 57.498 40.909 0.00 0.00 32.87 4.35
2912 3256 4.860352 TCATCGAGTATAAAACACCACACG 59.140 41.667 0.00 0.00 0.00 4.49
2913 3257 5.867716 ACTCATCGAGTATAAAACACCACAC 59.132 40.000 0.00 0.00 41.51 3.82
2914 3258 5.867174 CACTCATCGAGTATAAAACACCACA 59.133 40.000 0.00 0.00 41.37 4.17
2915 3259 5.867716 ACACTCATCGAGTATAAAACACCAC 59.132 40.000 0.00 0.00 41.37 4.16
2916 3260 6.032956 ACACTCATCGAGTATAAAACACCA 57.967 37.500 0.00 0.00 41.37 4.17
2917 3261 6.963049 AACACTCATCGAGTATAAAACACC 57.037 37.500 0.00 0.00 41.37 4.16
3001 3345 5.066893 CACTATGTGGCTGCTGTATTTTGAT 59.933 40.000 0.00 0.00 0.00 2.57
3004 3348 4.970662 CACTATGTGGCTGCTGTATTTT 57.029 40.909 0.00 0.00 0.00 1.82
3027 3371 4.262079 CCGTGAGTAGTTGTCCTTCTTTCT 60.262 45.833 0.00 0.00 0.00 2.52
3032 3378 1.067071 CCCCGTGAGTAGTTGTCCTTC 60.067 57.143 0.00 0.00 0.00 3.46
3083 3430 1.121407 AGGCAAGCCTTTGGGTTTCC 61.121 55.000 8.02 8.72 45.70 3.13
3449 3798 4.330944 TCCACAACAGAGTTTGTACGAT 57.669 40.909 0.00 0.00 39.73 3.73
3454 3803 4.156455 AGTCATCCACAACAGAGTTTGT 57.844 40.909 0.00 0.00 43.45 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.