Multiple sequence alignment - TraesCS4B01G103400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G103400 chr4B 100.000 5394 0 0 1 5394 109399407 109404800 0.000000e+00 9961.0
1 TraesCS4B01G103400 chr4D 92.838 2653 89 44 9 2638 77274124 77276698 0.000000e+00 3753.0
2 TraesCS4B01G103400 chr4D 92.766 1023 56 8 3747 4762 77277749 77278760 0.000000e+00 1463.0
3 TraesCS4B01G103400 chr4D 94.551 936 37 6 2798 3733 77276751 77277672 0.000000e+00 1434.0
4 TraesCS4B01G103400 chr4D 85.897 702 50 26 4717 5394 77278745 77279421 0.000000e+00 702.0
5 TraesCS4B01G103400 chr1A 86.165 412 35 10 1217 1611 21081752 21081346 4.990000e-115 425.0
6 TraesCS4B01G103400 chr3B 82.339 436 61 8 761 1186 74536846 74537275 1.100000e-96 364.0
7 TraesCS4B01G103400 chr3A 92.442 172 11 2 1220 1391 13208115 13207946 1.500000e-60 244.0
8 TraesCS4B01G103400 chr3A 86.897 145 8 3 1436 1572 13202937 13202796 9.360000e-33 152.0
9 TraesCS4B01G103400 chr1B 90.826 109 10 0 1776 1884 31467861 31467753 4.350000e-31 147.0
10 TraesCS4B01G103400 chr2D 80.769 156 20 4 996 1142 576288325 576288479 4.420000e-21 113.0
11 TraesCS4B01G103400 chr2A 80.769 156 20 4 996 1142 714337269 714337423 4.420000e-21 113.0
12 TraesCS4B01G103400 chr2A 91.111 45 4 0 3474 3518 39694900 39694856 1.620000e-05 62.1
13 TraesCS4B01G103400 chr2B 77.551 147 14 13 996 1142 692469516 692469643 2.700000e-08 71.3
14 TraesCS4B01G103400 chr5B 91.111 45 4 0 3474 3518 38363421 38363377 1.620000e-05 62.1
15 TraesCS4B01G103400 chrUn 96.970 33 1 0 3486 3518 277981897 277981865 7.550000e-04 56.5
16 TraesCS4B01G103400 chr7D 100.000 29 0 0 3474 3502 457226597 457226569 3.000000e-03 54.7
17 TraesCS4B01G103400 chr6D 100.000 29 0 0 3474 3502 97570986 97570958 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G103400 chr4B 109399407 109404800 5393 False 9961 9961 100.000 1 5394 1 chr4B.!!$F1 5393
1 TraesCS4B01G103400 chr4D 77274124 77279421 5297 False 1838 3753 91.513 9 5394 4 chr4D.!!$F1 5385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.108089 TGTCTCTCCCGACTCTCGAG 60.108 60.0 5.93 5.93 43.74 4.04 F
118 119 0.465642 CCTGCGAAATAGGGTTCCCC 60.466 60.0 4.02 0.00 45.90 4.81 F
1961 1999 0.473694 TCTTCCACAGCTCCCAGGAA 60.474 55.0 5.79 5.79 37.79 3.36 F
2677 2715 0.035056 CAGGCGGTCATCCTCCTTTT 60.035 55.0 0.00 0.00 45.72 2.27 F
3744 3782 0.035439 AGCGGTATGTTTCACCCAGG 60.035 55.0 0.00 0.00 31.96 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 1726 0.029300 CGGCACACAAGACCAACAAG 59.971 55.0 0.0 0.0 0.0 3.16 R
1963 2001 0.038166 GGTGGTGGATGAAGAAGCCA 59.962 55.0 0.0 0.0 0.0 4.75 R
3738 3776 0.106719 CCGGTGAAATATGCCTGGGT 60.107 55.0 0.0 0.0 0.0 4.51 R
4349 4454 0.107214 TCGGGACCTGGCATTTCATC 60.107 55.0 0.0 0.0 0.0 2.92 R
4864 5009 0.030504 TGGCTTTGCAACATCACACG 59.969 50.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 4.747218 GGTGTCTCTCCCGACTCT 57.253 61.111 0.00 0.00 35.00 3.24
92 93 2.484558 GGTGTCTCTCCCGACTCTC 58.515 63.158 0.00 0.00 35.00 3.20
93 94 1.370587 GGTGTCTCTCCCGACTCTCG 61.371 65.000 0.00 0.00 40.07 4.04
94 95 0.391395 GTGTCTCTCCCGACTCTCGA 60.391 60.000 0.00 0.00 43.74 4.04
95 96 0.108089 TGTCTCTCCCGACTCTCGAG 60.108 60.000 5.93 5.93 43.74 4.04
96 97 1.153329 TCTCTCCCGACTCTCGAGC 60.153 63.158 7.81 0.00 43.74 5.03
97 98 2.511829 TCTCCCGACTCTCGAGCG 60.512 66.667 7.81 3.64 43.74 5.03
98 99 4.244802 CTCCCGACTCTCGAGCGC 62.245 72.222 7.81 0.00 43.74 5.92
102 103 4.544689 CGACTCTCGAGCGCCCTG 62.545 72.222 7.81 0.00 43.74 4.45
103 104 4.863925 GACTCTCGAGCGCCCTGC 62.864 72.222 7.81 0.00 46.98 4.85
117 118 3.095922 CCTGCGAAATAGGGTTCCC 57.904 57.895 0.00 0.00 0.00 3.97
118 119 0.465642 CCTGCGAAATAGGGTTCCCC 60.466 60.000 4.02 0.00 45.90 4.81
213 230 2.046892 CTCGCCTCAACCCAGGTG 60.047 66.667 0.00 0.00 44.41 4.00
235 252 1.481871 TGACCACTCCGAACTATCCC 58.518 55.000 0.00 0.00 0.00 3.85
261 278 2.507992 CTCTTGAGGCTGCCGTCG 60.508 66.667 13.96 3.54 0.00 5.12
266 283 4.148825 GAGGCTGCCGTCGGACAT 62.149 66.667 17.49 0.03 0.00 3.06
375 392 3.058160 CTGGGCAGCCAAGTTCCG 61.058 66.667 15.19 0.00 0.00 4.30
376 393 4.659172 TGGGCAGCCAAGTTCCGG 62.659 66.667 15.19 0.00 0.00 5.14
377 394 4.660938 GGGCAGCCAAGTTCCGGT 62.661 66.667 15.19 0.00 0.00 5.28
378 395 3.365265 GGCAGCCAAGTTCCGGTG 61.365 66.667 6.55 0.00 0.00 4.94
379 396 4.043200 GCAGCCAAGTTCCGGTGC 62.043 66.667 0.00 7.65 0.00 5.01
380 397 3.365265 CAGCCAAGTTCCGGTGCC 61.365 66.667 0.00 0.00 0.00 5.01
381 398 3.570212 AGCCAAGTTCCGGTGCCT 61.570 61.111 0.00 0.00 0.00 4.75
382 399 3.056328 GCCAAGTTCCGGTGCCTC 61.056 66.667 0.00 0.00 0.00 4.70
383 400 2.359975 CCAAGTTCCGGTGCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
384 401 2.359975 CAAGTTCCGGTGCCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
385 402 3.647771 AAGTTCCGGTGCCTCCCC 61.648 66.667 0.00 0.00 0.00 4.81
391 408 4.410400 CGGTGCCTCCCCCAACTC 62.410 72.222 0.00 0.00 0.00 3.01
392 409 4.048470 GGTGCCTCCCCCAACTCC 62.048 72.222 0.00 0.00 0.00 3.85
393 410 2.936032 GTGCCTCCCCCAACTCCT 60.936 66.667 0.00 0.00 0.00 3.69
394 411 2.610859 TGCCTCCCCCAACTCCTC 60.611 66.667 0.00 0.00 0.00 3.71
395 412 2.285743 GCCTCCCCCAACTCCTCT 60.286 66.667 0.00 0.00 0.00 3.69
396 413 2.371259 GCCTCCCCCAACTCCTCTC 61.371 68.421 0.00 0.00 0.00 3.20
397 414 1.690985 CCTCCCCCAACTCCTCTCC 60.691 68.421 0.00 0.00 0.00 3.71
461 478 2.871096 TGCGGATACCTGGAAAAAGT 57.129 45.000 0.00 0.00 0.00 2.66
463 480 4.289238 TGCGGATACCTGGAAAAAGTAA 57.711 40.909 0.00 0.00 0.00 2.24
484 513 3.966154 AGACGAGTTGTTGAGTGTACAG 58.034 45.455 0.00 0.00 0.00 2.74
552 584 5.021120 TCGTAAATTCCGTTGTGCTAAAC 57.979 39.130 0.00 0.00 0.00 2.01
588 620 5.221126 GGAATCATTTCAGTAGCCCAATCAC 60.221 44.000 0.00 0.00 33.23 3.06
589 621 4.574674 TCATTTCAGTAGCCCAATCACT 57.425 40.909 0.00 0.00 0.00 3.41
590 622 4.517285 TCATTTCAGTAGCCCAATCACTC 58.483 43.478 0.00 0.00 0.00 3.51
591 623 4.019411 TCATTTCAGTAGCCCAATCACTCA 60.019 41.667 0.00 0.00 0.00 3.41
600 632 1.538512 CCCAATCACTCAGTGTGCTTG 59.461 52.381 4.28 10.82 46.45 4.01
666 698 6.042143 ACAATCATTGTGTTGTTCACCTTTC 58.958 36.000 0.98 0.00 45.61 2.62
668 700 5.499139 TCATTGTGTTGTTCACCTTTCTC 57.501 39.130 0.00 0.00 45.61 2.87
688 721 4.958581 TCTCATCTTTCTATCAGGTCTGCA 59.041 41.667 0.00 0.00 0.00 4.41
708 741 8.233190 GTCTGCATTAGTTATATGCCAAGATTC 58.767 37.037 5.47 0.00 46.05 2.52
711 744 7.175467 TGCATTAGTTATATGCCAAGATTCCAG 59.825 37.037 5.47 0.00 46.05 3.86
718 751 3.737559 TGCCAAGATTCCAGTTACCAT 57.262 42.857 0.00 0.00 0.00 3.55
761 794 4.505566 GGGCAGCTGAGGAACATATATCAA 60.506 45.833 20.43 0.00 0.00 2.57
794 827 6.650390 ACAAAATGCTGAACTGAAGTTGTTTT 59.350 30.769 0.00 0.00 38.56 2.43
866 899 8.519492 TTATGCAAGTTTGAATTTTAGAGTGC 57.481 30.769 0.00 0.00 0.00 4.40
965 998 6.991531 AGAGCAAGGAAGATAATCATTCTGTC 59.008 38.462 0.00 0.00 0.00 3.51
974 1007 9.118300 GAAGATAATCATTCTGTCCATCAAACT 57.882 33.333 0.00 0.00 0.00 2.66
1030 1063 0.890683 GTTTCTCAGGTGGGCCATTG 59.109 55.000 10.70 12.25 37.19 2.82
1079 1112 6.183360 GGATCGATTTGAGTTGATACAAGCAA 60.183 38.462 0.00 0.00 0.00 3.91
1082 1115 6.855914 TCGATTTGAGTTGATACAAGCAAAAC 59.144 34.615 12.68 10.47 31.05 2.43
1091 1124 8.247562 AGTTGATACAAGCAAAACTGTACAAAA 58.752 29.630 0.00 0.00 30.17 2.44
1324 1362 5.998981 ACATGACGTGGAATGGTAACTAAAA 59.001 36.000 0.00 0.00 37.61 1.52
1353 1391 8.527567 AATTGTTGATGTATTTTTACCAACCG 57.472 30.769 0.00 0.00 34.64 4.44
1399 1437 7.782168 TCCATCCTGCCAATATTTGTTGTATTA 59.218 33.333 0.00 0.00 0.00 0.98
1433 1471 4.437239 AGCAGATTGTTCTCCTGTTATCG 58.563 43.478 0.00 0.00 0.00 2.92
1569 1607 9.057089 CCTAAGTTTTTCTCTATTCACTTGTGT 57.943 33.333 0.46 0.00 0.00 3.72
1586 1624 5.070313 ACTTGTGTTAAGGCATTCAACCAAT 59.930 36.000 0.00 0.00 0.00 3.16
1642 1680 2.229792 GCTAATGCAATGGAATCGGGA 58.770 47.619 0.00 0.00 39.41 5.14
1669 1707 3.889815 TGCCCTCCTGATTGTCTAAATG 58.110 45.455 0.00 0.00 0.00 2.32
1685 1723 8.630054 TGTCTAAATGTTTTATAGCTGGTTGT 57.370 30.769 0.00 0.00 0.00 3.32
1686 1724 9.073475 TGTCTAAATGTTTTATAGCTGGTTGTT 57.927 29.630 0.00 0.00 0.00 2.83
1687 1725 9.341899 GTCTAAATGTTTTATAGCTGGTTGTTG 57.658 33.333 0.00 0.00 0.00 3.33
1688 1726 8.026607 TCTAAATGTTTTATAGCTGGTTGTTGC 58.973 33.333 0.00 0.00 0.00 4.17
1689 1727 5.982890 ATGTTTTATAGCTGGTTGTTGCT 57.017 34.783 0.00 0.00 42.67 3.91
1710 1748 1.525077 TTGGTCTTGTGTGCCGGTC 60.525 57.895 1.90 0.00 0.00 4.79
1851 1889 7.629437 GCTTAGAGATTTCCTCACCAAATTTCC 60.629 40.741 0.00 0.00 44.40 3.13
1936 1974 7.102346 CCATAAGAGACAGAGAAATTGACAGT 58.898 38.462 0.00 0.00 0.00 3.55
1939 1977 6.656632 AGAGACAGAGAAATTGACAGTACA 57.343 37.500 0.00 0.00 0.00 2.90
1954 1992 1.548269 AGTACAGCTCTTCCACAGCTC 59.452 52.381 0.00 0.00 44.25 4.09
1955 1993 0.898320 TACAGCTCTTCCACAGCTCC 59.102 55.000 0.00 0.00 44.25 4.70
1956 1994 1.078567 CAGCTCTTCCACAGCTCCC 60.079 63.158 0.00 0.00 44.25 4.30
1957 1995 1.537397 AGCTCTTCCACAGCTCCCA 60.537 57.895 0.00 0.00 44.25 4.37
1958 1996 1.078567 GCTCTTCCACAGCTCCCAG 60.079 63.158 0.00 0.00 33.75 4.45
1959 1997 1.601171 CTCTTCCACAGCTCCCAGG 59.399 63.158 0.00 0.00 0.00 4.45
1960 1998 0.906756 CTCTTCCACAGCTCCCAGGA 60.907 60.000 0.00 0.00 0.00 3.86
1961 1999 0.473694 TCTTCCACAGCTCCCAGGAA 60.474 55.000 5.79 5.79 37.79 3.36
1962 2000 2.069776 TTCCACAGCTCCCAGGAAG 58.930 57.895 0.00 0.00 35.35 3.46
1963 2001 0.768221 TTCCACAGCTCCCAGGAAGT 60.768 55.000 0.00 0.00 35.35 3.01
1964 2002 1.002868 CCACAGCTCCCAGGAAGTG 60.003 63.158 0.00 6.61 0.00 3.16
1973 2011 0.401738 CCCAGGAAGTGGCTTCTTCA 59.598 55.000 18.76 0.00 46.45 3.02
2025 2063 4.654262 TGGTCATTATCCACCTCCTTCTAC 59.346 45.833 0.00 0.00 33.36 2.59
2108 2146 1.661341 ACGCAATCTCCTGCATCTTC 58.339 50.000 0.00 0.00 42.77 2.87
2110 2148 1.316651 GCAATCTCCTGCATCTTCCC 58.683 55.000 0.00 0.00 42.17 3.97
2149 2187 6.883744 AGATTATGGAAGAAACTCTCAGTCC 58.116 40.000 0.00 0.00 33.17 3.85
2263 2301 0.038251 TGAGACCACGACTGACATGC 60.038 55.000 0.00 0.00 0.00 4.06
2264 2302 0.038251 GAGACCACGACTGACATGCA 60.038 55.000 0.00 0.00 0.00 3.96
2265 2303 0.610174 AGACCACGACTGACATGCAT 59.390 50.000 0.00 0.00 0.00 3.96
2266 2304 0.723414 GACCACGACTGACATGCATG 59.277 55.000 25.09 25.09 0.00 4.06
2283 2321 3.181440 TGCATGACCTCCTTTCAGTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
2284 2322 3.438434 GCATGACCTCCTTTCAGTCTTTC 59.562 47.826 0.00 0.00 0.00 2.62
2332 2370 6.238953 GCATGCATGTCTTCCTCAATATTTCT 60.239 38.462 26.79 0.00 0.00 2.52
2384 2422 4.320870 TGTTCGTCTGACTTATTTTCCCC 58.679 43.478 6.21 0.00 0.00 4.81
2396 2434 3.518992 ATTTTCCCCAACTTCTTCCGA 57.481 42.857 0.00 0.00 0.00 4.55
2443 2481 6.406093 CACATTTTGTGCTTCAACTTTCAA 57.594 33.333 0.00 0.00 41.89 2.69
2447 2485 7.981225 ACATTTTGTGCTTCAACTTTCAATACT 59.019 29.630 0.00 0.00 35.61 2.12
2449 2487 4.858935 TGTGCTTCAACTTTCAATACTGC 58.141 39.130 0.00 0.00 0.00 4.40
2507 2545 1.065701 CGTACGTGCAGCCTCTTCTAT 59.934 52.381 7.22 0.00 0.00 1.98
2549 2587 1.305930 CCGCAAAGCCCTACAACCTC 61.306 60.000 0.00 0.00 0.00 3.85
2556 2594 1.870055 GCCCTACAACCTCGACGTCA 61.870 60.000 17.16 1.87 0.00 4.35
2592 2630 4.662961 CGCGGCTGGAGTGTGACA 62.663 66.667 0.00 0.00 0.00 3.58
2633 2671 4.696877 CACAAGGCAATCTAAGTCATCACA 59.303 41.667 0.00 0.00 0.00 3.58
2634 2672 5.356190 CACAAGGCAATCTAAGTCATCACAT 59.644 40.000 0.00 0.00 0.00 3.21
2635 2673 5.948162 ACAAGGCAATCTAAGTCATCACATT 59.052 36.000 0.00 0.00 0.00 2.71
2636 2674 6.435277 ACAAGGCAATCTAAGTCATCACATTT 59.565 34.615 0.00 0.00 0.00 2.32
2637 2675 7.039504 ACAAGGCAATCTAAGTCATCACATTTT 60.040 33.333 0.00 0.00 0.00 1.82
2638 2676 7.093322 AGGCAATCTAAGTCATCACATTTTC 57.907 36.000 0.00 0.00 0.00 2.29
2639 2677 6.660521 AGGCAATCTAAGTCATCACATTTTCA 59.339 34.615 0.00 0.00 0.00 2.69
2640 2678 7.341256 AGGCAATCTAAGTCATCACATTTTCAT 59.659 33.333 0.00 0.00 0.00 2.57
2641 2679 7.646922 GGCAATCTAAGTCATCACATTTTCATC 59.353 37.037 0.00 0.00 0.00 2.92
2642 2680 7.375280 GCAATCTAAGTCATCACATTTTCATCG 59.625 37.037 0.00 0.00 0.00 3.84
2643 2681 6.349973 TCTAAGTCATCACATTTTCATCGC 57.650 37.500 0.00 0.00 0.00 4.58
2644 2682 4.361451 AAGTCATCACATTTTCATCGCC 57.639 40.909 0.00 0.00 0.00 5.54
2645 2683 3.614092 AGTCATCACATTTTCATCGCCT 58.386 40.909 0.00 0.00 0.00 5.52
2646 2684 4.769688 AGTCATCACATTTTCATCGCCTA 58.230 39.130 0.00 0.00 0.00 3.93
2647 2685 4.813161 AGTCATCACATTTTCATCGCCTAG 59.187 41.667 0.00 0.00 0.00 3.02
2648 2686 4.811024 GTCATCACATTTTCATCGCCTAGA 59.189 41.667 0.00 0.00 0.00 2.43
2649 2687 5.468072 GTCATCACATTTTCATCGCCTAGAT 59.532 40.000 0.00 0.00 41.01 1.98
2661 2699 1.753470 CCTAGATGCAGAGGCCAGG 59.247 63.158 5.01 0.00 40.13 4.45
2662 2700 1.071128 CTAGATGCAGAGGCCAGGC 59.929 63.158 5.01 1.26 40.13 4.85
2663 2701 2.712325 CTAGATGCAGAGGCCAGGCG 62.712 65.000 5.01 0.00 40.13 5.52
2668 2706 3.790437 CAGAGGCCAGGCGGTCAT 61.790 66.667 5.01 0.00 40.51 3.06
2669 2707 3.474570 AGAGGCCAGGCGGTCATC 61.475 66.667 5.01 3.72 40.51 2.92
2670 2708 4.554036 GAGGCCAGGCGGTCATCC 62.554 72.222 5.01 0.00 40.51 3.51
2672 2710 4.554036 GGCCAGGCGGTCATCCTC 62.554 72.222 5.00 0.00 36.65 3.71
2673 2711 4.554036 GCCAGGCGGTCATCCTCC 62.554 72.222 0.00 0.00 38.79 4.30
2675 2713 2.370445 CCAGGCGGTCATCCTCCTT 61.370 63.158 0.00 0.00 45.72 3.36
2676 2714 1.604378 CAGGCGGTCATCCTCCTTT 59.396 57.895 0.00 0.00 45.72 3.11
2677 2715 0.035056 CAGGCGGTCATCCTCCTTTT 60.035 55.000 0.00 0.00 45.72 2.27
2678 2716 0.698818 AGGCGGTCATCCTCCTTTTT 59.301 50.000 0.00 0.00 45.72 1.94
2679 2717 0.811281 GGCGGTCATCCTCCTTTTTG 59.189 55.000 0.00 0.00 35.82 2.44
2680 2718 1.613255 GGCGGTCATCCTCCTTTTTGA 60.613 52.381 0.00 0.00 35.82 2.69
2681 2719 2.159382 GCGGTCATCCTCCTTTTTGAA 58.841 47.619 0.00 0.00 0.00 2.69
2682 2720 2.556622 GCGGTCATCCTCCTTTTTGAAA 59.443 45.455 0.00 0.00 0.00 2.69
2683 2721 3.005367 GCGGTCATCCTCCTTTTTGAAAA 59.995 43.478 0.00 0.00 0.00 2.29
2684 2722 4.500716 GCGGTCATCCTCCTTTTTGAAAAA 60.501 41.667 2.83 2.83 0.00 1.94
2747 2785 6.598064 ACCTTAATTACACTTGTATCACCTGC 59.402 38.462 0.00 0.00 0.00 4.85
2749 2787 7.985184 CCTTAATTACACTTGTATCACCTGCTA 59.015 37.037 0.00 0.00 0.00 3.49
2763 2801 3.859961 CACCTGCTATGCGTATATGCTAC 59.140 47.826 17.56 5.51 35.36 3.58
2764 2802 3.764434 ACCTGCTATGCGTATATGCTACT 59.236 43.478 17.56 5.65 35.36 2.57
2765 2803 4.142359 ACCTGCTATGCGTATATGCTACTC 60.142 45.833 17.56 5.85 35.36 2.59
2766 2804 4.355437 CTGCTATGCGTATATGCTACTCC 58.645 47.826 17.56 3.92 35.36 3.85
2767 2805 3.761752 TGCTATGCGTATATGCTACTCCA 59.238 43.478 17.56 6.22 35.36 3.86
2768 2806 4.402474 TGCTATGCGTATATGCTACTCCAT 59.598 41.667 17.56 4.70 35.36 3.41
2769 2807 4.979197 GCTATGCGTATATGCTACTCCATC 59.021 45.833 17.56 0.00 35.36 3.51
2770 2808 3.868757 TGCGTATATGCTACTCCATCC 57.131 47.619 17.56 0.00 35.36 3.51
2771 2809 3.161866 TGCGTATATGCTACTCCATCCA 58.838 45.455 17.56 0.00 35.36 3.41
2772 2810 3.769300 TGCGTATATGCTACTCCATCCAT 59.231 43.478 17.56 0.00 35.36 3.41
2773 2811 4.222810 TGCGTATATGCTACTCCATCCATT 59.777 41.667 17.56 0.00 35.36 3.16
2774 2812 4.806247 GCGTATATGCTACTCCATCCATTC 59.194 45.833 9.78 0.00 0.00 2.67
2775 2813 5.352284 CGTATATGCTACTCCATCCATTCC 58.648 45.833 0.00 0.00 0.00 3.01
2776 2814 4.851639 ATATGCTACTCCATCCATTCCC 57.148 45.455 0.00 0.00 0.00 3.97
2777 2815 2.196742 TGCTACTCCATCCATTCCCT 57.803 50.000 0.00 0.00 0.00 4.20
2778 2816 2.492025 TGCTACTCCATCCATTCCCTT 58.508 47.619 0.00 0.00 0.00 3.95
2779 2817 3.664320 TGCTACTCCATCCATTCCCTTA 58.336 45.455 0.00 0.00 0.00 2.69
2780 2818 4.242811 TGCTACTCCATCCATTCCCTTAT 58.757 43.478 0.00 0.00 0.00 1.73
2781 2819 5.411493 TGCTACTCCATCCATTCCCTTATA 58.589 41.667 0.00 0.00 0.00 0.98
2782 2820 5.248477 TGCTACTCCATCCATTCCCTTATAC 59.752 44.000 0.00 0.00 0.00 1.47
2783 2821 5.248477 GCTACTCCATCCATTCCCTTATACA 59.752 44.000 0.00 0.00 0.00 2.29
2784 2822 6.239887 GCTACTCCATCCATTCCCTTATACAA 60.240 42.308 0.00 0.00 0.00 2.41
2785 2823 6.192970 ACTCCATCCATTCCCTTATACAAG 57.807 41.667 0.00 0.00 0.00 3.16
2786 2824 5.672194 ACTCCATCCATTCCCTTATACAAGT 59.328 40.000 0.00 0.00 0.00 3.16
2787 2825 5.940617 TCCATCCATTCCCTTATACAAGTG 58.059 41.667 0.00 0.00 0.00 3.16
2788 2826 5.072741 CCATCCATTCCCTTATACAAGTGG 58.927 45.833 0.00 0.00 0.00 4.00
2789 2827 4.788925 TCCATTCCCTTATACAAGTGGG 57.211 45.455 0.00 0.00 40.95 4.61
2790 2828 4.376223 TCCATTCCCTTATACAAGTGGGA 58.624 43.478 0.00 0.00 46.04 4.37
2794 2832 4.788925 TCCCTTATACAAGTGGGAATGG 57.211 45.455 0.00 0.00 44.89 3.16
2795 2833 4.376223 TCCCTTATACAAGTGGGAATGGA 58.624 43.478 0.00 0.00 44.89 3.41
2796 2834 4.412199 TCCCTTATACAAGTGGGAATGGAG 59.588 45.833 0.00 0.00 44.89 3.86
2797 2835 4.166144 CCCTTATACAAGTGGGAATGGAGT 59.834 45.833 0.00 0.00 42.11 3.85
2798 2836 5.368523 CCCTTATACAAGTGGGAATGGAGTA 59.631 44.000 0.00 0.00 42.11 2.59
2840 2878 3.316308 CCTTCCAAGTTCCAACTCAACTG 59.684 47.826 0.00 0.00 38.57 3.16
2849 2887 3.995199 TCCAACTCAACTGTAGCTTCAG 58.005 45.455 17.87 17.87 40.80 3.02
2918 2956 2.535485 TATTGCAGGGGCCACACGAG 62.535 60.000 8.31 0.00 40.13 4.18
2957 2995 1.282570 CAACGTGGTGCCATGTGAC 59.717 57.895 15.92 0.00 44.45 3.67
2966 3004 1.519234 GCCATGTGACGATGAGCGA 60.519 57.895 0.00 0.00 44.57 4.93
3041 3079 4.180817 CAGACCAATGCGACTATGTGTTA 58.819 43.478 0.00 0.00 0.00 2.41
3046 3084 4.201812 CCAATGCGACTATGTGTTAGGTTG 60.202 45.833 0.00 0.00 31.68 3.77
3081 3119 2.032528 CCTTGGGCGTGCTCTTGA 59.967 61.111 0.00 0.00 0.00 3.02
3119 3157 0.240945 CCACCAACAATGAGAACCGC 59.759 55.000 0.00 0.00 0.00 5.68
3156 3194 3.405831 GGGTAGGCGTTACTGAAACTTT 58.594 45.455 0.00 0.00 35.81 2.66
3199 3237 1.069296 CATGATTCGGTTGTTGCGTGT 60.069 47.619 0.00 0.00 0.00 4.49
3259 3297 0.679321 GGGAAAGAGGCAGGCAAGAG 60.679 60.000 0.00 0.00 0.00 2.85
3260 3298 1.311651 GGAAAGAGGCAGGCAAGAGC 61.312 60.000 0.00 0.00 41.10 4.09
3295 3333 3.833645 CGTCCTCGGGATCGGCAA 61.834 66.667 0.00 0.00 32.73 4.52
3342 3380 4.037690 GCTAAAGCAACAAGGCATAATCG 58.962 43.478 0.00 0.00 41.59 3.34
3343 3381 4.438744 GCTAAAGCAACAAGGCATAATCGT 60.439 41.667 0.00 0.00 41.59 3.73
3362 3400 4.269183 TCGTTGACAATATCTTTGGCCAT 58.731 39.130 6.09 0.00 0.00 4.40
3464 3502 3.452990 TGGCTCAGAATGTCGGGTAATTA 59.547 43.478 0.00 0.00 37.40 1.40
3466 3504 4.443034 GGCTCAGAATGTCGGGTAATTACT 60.443 45.833 15.05 0.00 37.40 2.24
3514 3552 1.202533 GCTATAGCGGTTTGAGCAGGA 60.203 52.381 9.40 0.00 37.01 3.86
3533 3571 6.337853 CAGGATGCTCTTAAACGAAGTAAG 57.662 41.667 0.00 0.00 45.00 2.34
3546 3584 5.266733 ACGAAGTAAGTAGGTGTTTCACA 57.733 39.130 0.00 0.00 41.94 3.58
3695 3733 1.838077 GGGAGCACCTACACCTATGTT 59.162 52.381 0.00 0.00 40.48 2.71
3723 3761 3.498397 GGACACATATGGTCGCCTTATTG 59.502 47.826 7.80 0.00 36.12 1.90
3733 3771 0.235665 CGCCTTATTGCAGCGGTATG 59.764 55.000 9.22 0.00 45.88 2.39
3735 3773 1.676006 GCCTTATTGCAGCGGTATGTT 59.324 47.619 0.00 0.00 0.00 2.71
3737 3775 3.792124 GCCTTATTGCAGCGGTATGTTTC 60.792 47.826 0.00 0.00 0.00 2.78
3738 3776 3.376859 CCTTATTGCAGCGGTATGTTTCA 59.623 43.478 0.00 0.00 0.00 2.69
3739 3777 2.919666 ATTGCAGCGGTATGTTTCAC 57.080 45.000 0.00 0.00 0.00 3.18
3740 3778 0.878416 TTGCAGCGGTATGTTTCACC 59.122 50.000 0.00 0.00 0.00 4.02
3743 3781 1.086696 CAGCGGTATGTTTCACCCAG 58.913 55.000 0.00 0.00 31.96 4.45
3744 3782 0.035439 AGCGGTATGTTTCACCCAGG 60.035 55.000 0.00 0.00 31.96 4.45
3745 3783 1.654023 GCGGTATGTTTCACCCAGGC 61.654 60.000 0.00 0.00 31.96 4.85
3752 3853 5.221244 GGTATGTTTCACCCAGGCATATTTC 60.221 44.000 0.00 0.00 0.00 2.17
3819 3920 0.895100 TTGCATTGCAGGTGGGAGTC 60.895 55.000 11.76 0.00 40.61 3.36
3865 3966 2.891936 TGGACGATGATGCGCTGC 60.892 61.111 9.73 0.13 33.86 5.25
3884 3985 1.203287 GCCTGAATGCTGGGAAGAAAC 59.797 52.381 0.00 0.00 33.99 2.78
3899 4000 4.415735 GAAGAAACCGAGCCAATTCAATC 58.584 43.478 0.00 0.00 0.00 2.67
3945 4046 3.627577 TCAAGCCACTTGAACTCACTTTC 59.372 43.478 7.54 0.00 45.84 2.62
4010 4111 8.714179 TGAAAACTATATTGTTGTCACGGTAAG 58.286 33.333 16.10 0.00 38.73 2.34
4025 4130 2.161609 CGGTAAGTGAACCTTGGATTGC 59.838 50.000 0.00 0.00 37.39 3.56
4027 4132 3.826729 GGTAAGTGAACCTTGGATTGCTT 59.173 43.478 0.00 0.00 36.53 3.91
4054 4159 2.464459 GGCTGCCTGAAACGGATCG 61.464 63.158 12.43 0.00 0.00 3.69
4120 4225 2.021457 CAGAAAACCGGGAAAGTGTGT 58.979 47.619 6.32 0.00 0.00 3.72
4198 4303 5.587043 AGGTGTGAAATTCAGTCAAACGTTA 59.413 36.000 0.00 0.00 34.53 3.18
4201 4306 4.901881 GTGAAATTCAGTCAAACGTTACCG 59.098 41.667 0.00 0.00 40.83 4.02
4220 4325 2.161609 CCGCTTTGGGAAACTATGACAC 59.838 50.000 0.00 0.00 0.00 3.67
4266 4371 9.912634 TTTAATGATTTCCACACTGATTTTCTC 57.087 29.630 0.00 0.00 0.00 2.87
4324 4429 1.366679 ACGATAACGAGAGAGCACGA 58.633 50.000 0.00 0.00 42.66 4.35
4365 4470 1.474077 GTGTGATGAAATGCCAGGTCC 59.526 52.381 0.00 0.00 0.00 4.46
4384 4489 2.189833 CGAACCTCTCATCGGGTCA 58.810 57.895 0.00 0.00 38.17 4.02
4390 4495 0.378962 CTCTCATCGGGTCACGTCTC 59.621 60.000 0.00 0.00 44.69 3.36
4391 4496 0.035343 TCTCATCGGGTCACGTCTCT 60.035 55.000 0.00 0.00 44.69 3.10
4392 4497 0.099613 CTCATCGGGTCACGTCTCTG 59.900 60.000 0.00 0.00 44.69 3.35
4393 4498 0.322187 TCATCGGGTCACGTCTCTGA 60.322 55.000 0.00 0.00 44.69 3.27
4394 4499 0.526211 CATCGGGTCACGTCTCTGAA 59.474 55.000 0.00 0.00 44.69 3.02
4395 4500 1.067846 CATCGGGTCACGTCTCTGAAA 60.068 52.381 0.00 0.00 44.69 2.69
4396 4501 1.254026 TCGGGTCACGTCTCTGAAAT 58.746 50.000 0.00 0.00 44.69 2.17
4399 4504 2.732597 CGGGTCACGTCTCTGAAATCTC 60.733 54.545 0.00 0.00 37.93 2.75
4405 4510 5.635280 GTCACGTCTCTGAAATCTCAATGAA 59.365 40.000 0.00 0.00 0.00 2.57
4412 4517 6.594547 TCTCTGAAATCTCAATGAAGCTTCTG 59.405 38.462 26.09 17.25 0.00 3.02
4428 4533 1.303074 CTGCTGACATGCTGTGGGT 60.303 57.895 0.00 0.00 0.00 4.51
4434 4540 1.089920 GACATGCTGTGGGTTAGCTG 58.910 55.000 0.00 0.00 41.66 4.24
4466 4572 3.190874 GGAGGTGTCATCGCTTTAGAAG 58.809 50.000 0.00 0.00 0.00 2.85
4501 4607 6.004574 ACCTTAACAAGAATGAAGGACTTCC 58.995 40.000 9.39 0.00 40.88 3.46
4570 4677 0.512518 TGATTGCAGCGTTCTGTTCG 59.487 50.000 0.00 0.00 42.29 3.95
4579 4686 4.287781 TTCTGTTCGGCCGCACGA 62.288 61.111 23.51 18.53 41.76 4.35
4594 4701 2.173669 ACGATGCGCCTTCCAATCG 61.174 57.895 19.95 19.95 37.53 3.34
4603 4710 1.298157 CCTTCCAATCGTCGCTTGCA 61.298 55.000 3.29 0.00 0.00 4.08
4606 4713 2.017138 TCCAATCGTCGCTTGCAATA 57.983 45.000 0.00 0.00 0.00 1.90
4609 4716 3.002246 TCCAATCGTCGCTTGCAATATTC 59.998 43.478 0.00 0.00 0.00 1.75
4614 4721 2.206750 GTCGCTTGCAATATTCCGGTA 58.793 47.619 0.00 0.00 0.00 4.02
4625 4732 5.710984 CAATATTCCGGTAATAGAGAGCGT 58.289 41.667 0.00 0.00 36.10 5.07
4646 4753 4.492160 CATGCAGCCTGCCTTGCG 62.492 66.667 15.29 0.00 44.23 4.85
4653 4760 0.830648 AGCCTGCCTTGCGTTATCTA 59.169 50.000 0.00 0.00 0.00 1.98
4657 4764 3.066760 GCCTGCCTTGCGTTATCTAATTT 59.933 43.478 0.00 0.00 0.00 1.82
4660 4767 4.523083 TGCCTTGCGTTATCTAATTTCCT 58.477 39.130 0.00 0.00 0.00 3.36
4736 4843 7.201696 GCAATGTCTAAAGAATGTATTTCCCGA 60.202 37.037 0.00 0.00 34.67 5.14
4827 4972 2.900167 CTGTGGTCGTCGTCGGTCA 61.900 63.158 1.55 0.00 37.69 4.02
4851 4996 2.359850 GTGCCATTGGGTCGCTCA 60.360 61.111 4.53 0.00 36.17 4.26
4861 5006 1.523154 GGGTCGCTCATTGCAAACCA 61.523 55.000 15.69 0.00 44.42 3.67
4864 5009 0.874390 TCGCTCATTGCAAACCAGAC 59.126 50.000 1.71 0.00 43.06 3.51
4887 5032 1.987770 GTGATGTTGCAAAGCCATTCG 59.012 47.619 0.00 0.00 0.00 3.34
4890 5035 2.088178 GTTGCAAAGCCATTCGCCG 61.088 57.895 0.00 0.00 38.78 6.46
4891 5036 2.560119 TTGCAAAGCCATTCGCCGT 61.560 52.632 0.00 0.00 38.78 5.68
4906 5051 0.249031 GCCGTTGTCTTTTGCTGCTT 60.249 50.000 0.00 0.00 0.00 3.91
4920 5065 3.458653 GCTTCAAAGCCTGGCCAA 58.541 55.556 16.57 2.42 46.20 4.52
4945 5090 2.107950 TACAAAGCTAGCCACGCAAT 57.892 45.000 12.13 0.00 0.00 3.56
4978 5123 1.095228 CCGGTGACACTGTTGCAAGT 61.095 55.000 13.35 0.00 0.00 3.16
4980 5125 1.378531 GGTGACACTGTTGCAAGTCA 58.621 50.000 13.51 13.51 38.56 3.41
4986 5131 0.870393 ACTGTTGCAAGTCAGATGCG 59.130 50.000 20.45 0.00 46.76 4.73
4997 5142 0.674269 TCAGATGCGTGATGCTGCAA 60.674 50.000 6.36 0.00 45.45 4.08
5048 5193 4.048504 GCCGCTGTTTCTTTTTGTTGTAT 58.951 39.130 0.00 0.00 0.00 2.29
5064 5210 1.217882 GTATAGCCGCCACATGACAC 58.782 55.000 0.00 0.00 0.00 3.67
5089 5237 5.127845 TGCAGGGTAGAGAGAAATAGTGAAG 59.872 44.000 0.00 0.00 0.00 3.02
5093 5241 6.605594 AGGGTAGAGAGAAATAGTGAAGAGTG 59.394 42.308 0.00 0.00 0.00 3.51
5101 5249 5.645497 AGAAATAGTGAAGAGTGCATTGGAC 59.355 40.000 0.00 0.00 0.00 4.02
5136 5285 5.828299 TTTGAGTTCACGTTGAAATTCCT 57.172 34.783 0.00 0.00 38.22 3.36
5137 5286 4.811555 TGAGTTCACGTTGAAATTCCTG 57.188 40.909 0.00 0.00 38.22 3.86
5154 5303 4.286297 TCCTGTGGAATGAAAGGTGTAG 57.714 45.455 0.00 0.00 0.00 2.74
5210 5359 5.013183 AGGGATAGCGGAATTTAGTTATGCT 59.987 40.000 8.40 0.00 35.35 3.79
5215 5364 9.151471 GATAGCGGAATTTAGTTATGCTAATCA 57.849 33.333 0.00 0.00 39.23 2.57
5231 5380 5.163405 TGCTAATCATAGGAATCGATAGGGC 60.163 44.000 0.00 0.00 0.00 5.19
5276 5432 9.652114 AGGATTCAAATGCTCTAAAATTCCTAT 57.348 29.630 0.00 0.00 30.72 2.57
5312 5468 8.058847 ACAATAGGCTGTAAATCCTTCCATAAA 58.941 33.333 0.00 0.00 34.02 1.40
5344 5500 1.478916 TGAATCAACATGCATGGCTGG 59.521 47.619 29.41 15.58 0.00 4.85
5346 5502 2.011741 ATCAACATGCATGGCTGGCG 62.012 55.000 29.41 11.41 0.00 5.69
5352 5508 4.360964 GCATGGCTGGCGCACAAA 62.361 61.111 10.83 0.00 38.10 2.83
5353 5509 2.339348 CATGGCTGGCGCACAAAA 59.661 55.556 10.83 0.00 38.10 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.677914 CCCTGTTTCCCCACTCTTTTT 58.322 47.619 0.00 0.00 0.00 1.94
5 6 1.133167 CCCCTGTTTCCCCACTCTTTT 60.133 52.381 0.00 0.00 0.00 2.27
6 7 0.482887 CCCCTGTTTCCCCACTCTTT 59.517 55.000 0.00 0.00 0.00 2.52
7 8 0.402861 TCCCCTGTTTCCCCACTCTT 60.403 55.000 0.00 0.00 0.00 2.85
66 67 3.371063 GAGAGACACCGGCCGTGA 61.371 66.667 26.12 0.00 46.20 4.35
74 75 1.370587 CGAGAGTCGGGAGAGACACC 61.371 65.000 0.00 0.00 43.24 4.16
75 76 0.391395 TCGAGAGTCGGGAGAGACAC 60.391 60.000 0.00 0.00 43.24 3.67
76 77 0.108089 CTCGAGAGTCGGGAGAGACA 60.108 60.000 6.58 0.00 44.60 3.41
78 79 1.153329 GCTCGAGAGTCGGGAGAGA 60.153 63.158 18.75 0.00 44.60 3.10
112 113 2.277084 GTACATGTGTCGATGGGGAAC 58.723 52.381 9.11 0.00 0.00 3.62
113 114 1.903183 TGTACATGTGTCGATGGGGAA 59.097 47.619 9.11 0.00 0.00 3.97
114 115 1.480545 CTGTACATGTGTCGATGGGGA 59.519 52.381 9.11 0.00 0.00 4.81
115 116 1.939974 CTGTACATGTGTCGATGGGG 58.060 55.000 9.11 0.00 0.00 4.96
116 117 1.134699 AGCTGTACATGTGTCGATGGG 60.135 52.381 9.11 0.00 0.00 4.00
117 118 2.196749 GAGCTGTACATGTGTCGATGG 58.803 52.381 9.11 0.00 0.00 3.51
118 119 2.196749 GGAGCTGTACATGTGTCGATG 58.803 52.381 9.11 0.00 0.00 3.84
119 120 1.202302 CGGAGCTGTACATGTGTCGAT 60.202 52.381 9.11 0.00 0.00 3.59
120 121 0.170339 CGGAGCTGTACATGTGTCGA 59.830 55.000 9.11 0.00 0.00 4.20
121 122 0.802222 CCGGAGCTGTACATGTGTCG 60.802 60.000 9.11 1.93 0.00 4.35
122 123 1.084370 GCCGGAGCTGTACATGTGTC 61.084 60.000 5.05 2.15 35.50 3.67
123 124 1.079127 GCCGGAGCTGTACATGTGT 60.079 57.895 5.05 0.00 35.50 3.72
124 125 3.799753 GCCGGAGCTGTACATGTG 58.200 61.111 5.05 0.00 35.50 3.21
213 230 2.036089 GGATAGTTCGGAGTGGTCATCC 59.964 54.545 0.00 0.00 0.00 3.51
261 278 2.614057 CGCAATGGTAGGAGAAATGTCC 59.386 50.000 0.00 0.00 36.79 4.02
266 283 1.737838 CTGCGCAATGGTAGGAGAAA 58.262 50.000 13.05 0.00 0.00 2.52
367 384 2.359975 GGGAGGCACCGGAACTTG 60.360 66.667 9.46 0.00 40.11 3.16
374 391 4.410400 GAGTTGGGGGAGGCACCG 62.410 72.222 0.00 0.00 40.11 4.94
375 392 4.048470 GGAGTTGGGGGAGGCACC 62.048 72.222 0.00 0.00 38.08 5.01
376 393 2.936032 AGGAGTTGGGGGAGGCAC 60.936 66.667 0.00 0.00 0.00 5.01
377 394 2.610859 GAGGAGTTGGGGGAGGCA 60.611 66.667 0.00 0.00 0.00 4.75
378 395 2.285743 AGAGGAGTTGGGGGAGGC 60.286 66.667 0.00 0.00 0.00 4.70
379 396 1.690985 GGAGAGGAGTTGGGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
380 397 2.060980 CGGAGAGGAGTTGGGGGAG 61.061 68.421 0.00 0.00 0.00 4.30
381 398 2.038975 CGGAGAGGAGTTGGGGGA 59.961 66.667 0.00 0.00 0.00 4.81
382 399 3.787001 GCGGAGAGGAGTTGGGGG 61.787 72.222 0.00 0.00 0.00 5.40
383 400 2.685380 AGCGGAGAGGAGTTGGGG 60.685 66.667 0.00 0.00 0.00 4.96
384 401 2.581354 CAGCGGAGAGGAGTTGGG 59.419 66.667 0.00 0.00 0.00 4.12
385 402 2.125350 GCAGCGGAGAGGAGTTGG 60.125 66.667 0.00 0.00 0.00 3.77
386 403 1.447489 CAGCAGCGGAGAGGAGTTG 60.447 63.158 0.00 0.00 0.00 3.16
387 404 1.603236 CTCAGCAGCGGAGAGGAGTT 61.603 60.000 16.97 0.00 34.24 3.01
388 405 2.036414 TCAGCAGCGGAGAGGAGT 59.964 61.111 0.00 0.00 0.00 3.85
389 406 2.806929 CTCAGCAGCGGAGAGGAG 59.193 66.667 16.97 0.30 34.24 3.69
392 409 2.493973 GACCTCAGCAGCGGAGAG 59.506 66.667 22.79 14.92 34.24 3.20
393 410 3.071206 GGACCTCAGCAGCGGAGA 61.071 66.667 22.79 4.69 34.24 3.71
394 411 2.454832 TTTGGACCTCAGCAGCGGAG 62.455 60.000 15.16 15.16 0.00 4.63
395 412 1.841302 ATTTGGACCTCAGCAGCGGA 61.841 55.000 0.00 0.00 0.00 5.54
396 413 0.107703 TATTTGGACCTCAGCAGCGG 60.108 55.000 0.00 0.00 0.00 5.52
397 414 1.009829 GTATTTGGACCTCAGCAGCG 58.990 55.000 0.00 0.00 0.00 5.18
461 478 5.503662 TGTACACTCAACAACTCGTCTTA 57.496 39.130 0.00 0.00 0.00 2.10
463 480 3.795826 GCTGTACACTCAACAACTCGTCT 60.796 47.826 0.00 0.00 0.00 4.18
484 513 9.947897 CACCGAATTAAATATATAGTACAACGC 57.052 33.333 0.00 0.00 0.00 4.84
543 575 3.340034 CTGGAATAACCGGTTTAGCACA 58.660 45.455 27.64 16.64 42.61 4.57
552 584 4.887071 TGAAATGATTCCTGGAATAACCGG 59.113 41.667 21.39 0.00 44.27 5.28
588 620 5.929697 TCTAAACAATCAAGCACACTGAG 57.070 39.130 0.00 0.00 0.00 3.35
589 621 5.997129 TCATCTAAACAATCAAGCACACTGA 59.003 36.000 0.00 0.00 0.00 3.41
590 622 6.082338 GTCATCTAAACAATCAAGCACACTG 58.918 40.000 0.00 0.00 0.00 3.66
591 623 5.764686 TGTCATCTAAACAATCAAGCACACT 59.235 36.000 0.00 0.00 0.00 3.55
666 698 5.273674 TGCAGACCTGATAGAAAGATGAG 57.726 43.478 0.47 0.00 0.00 2.90
668 700 7.215789 ACTAATGCAGACCTGATAGAAAGATG 58.784 38.462 0.47 0.00 0.00 2.90
708 741 4.398319 ACAGAAGAAACCATGGTAACTGG 58.602 43.478 20.12 14.66 39.80 4.00
711 744 5.048713 CCTCAACAGAAGAAACCATGGTAAC 60.049 44.000 20.12 15.06 0.00 2.50
718 751 2.422803 CCCACCTCAACAGAAGAAACCA 60.423 50.000 0.00 0.00 0.00 3.67
794 827 3.146066 CCAGTCCAAATTCCACTTCGAA 58.854 45.455 0.00 0.00 0.00 3.71
864 897 4.758251 CATCCAGGCCACGACGCA 62.758 66.667 5.01 0.00 0.00 5.24
866 899 4.758251 TGCATCCAGGCCACGACG 62.758 66.667 5.01 0.00 0.00 5.12
882 915 7.389053 GGGAATCAGATATAGTTAAGCAACCTG 59.611 40.741 0.00 0.00 35.05 4.00
965 998 0.394899 GGGCCTGGAGAGTTTGATGG 60.395 60.000 0.84 0.00 0.00 3.51
974 1007 1.352352 CTTCTTCTTTGGGCCTGGAGA 59.648 52.381 4.53 2.29 0.00 3.71
1030 1063 6.921307 CCACTTGAACCCTTAATACAAACAAC 59.079 38.462 0.00 0.00 0.00 3.32
1079 1112 9.127277 TCTAACTAAGGCATTTTTGTACAGTTT 57.873 29.630 0.00 0.00 0.00 2.66
1091 1124 8.528643 GTTTGGGTAATTTCTAACTAAGGCATT 58.471 33.333 0.00 0.00 0.00 3.56
1341 1379 7.094549 CCAAGAGTGAATATCGGTTGGTAAAAA 60.095 37.037 0.00 0.00 0.00 1.94
1353 1391 4.162320 TGGACCTGACCAAGAGTGAATATC 59.838 45.833 0.00 0.00 36.96 1.63
1433 1471 3.064545 GCTCAATGTGGAATCTGCTACAC 59.935 47.826 0.00 0.00 31.92 2.90
1569 1607 6.909550 AGTACAATTGGTTGAATGCCTTAA 57.090 33.333 10.83 0.00 38.71 1.85
1586 1624 7.497909 GCCCAGCTATAAAATTCAGTAGTACAA 59.502 37.037 2.52 0.00 0.00 2.41
1669 1707 5.528870 ACAAGCAACAACCAGCTATAAAAC 58.471 37.500 0.00 0.00 40.90 2.43
1683 1721 2.094803 CACACAAGACCAACAAGCAACA 60.095 45.455 0.00 0.00 0.00 3.33
1684 1722 2.529151 CACACAAGACCAACAAGCAAC 58.471 47.619 0.00 0.00 0.00 4.17
1685 1723 1.135141 GCACACAAGACCAACAAGCAA 60.135 47.619 0.00 0.00 0.00 3.91
1686 1724 0.455410 GCACACAAGACCAACAAGCA 59.545 50.000 0.00 0.00 0.00 3.91
1687 1725 0.249031 GGCACACAAGACCAACAAGC 60.249 55.000 0.00 0.00 0.00 4.01
1688 1726 0.029300 CGGCACACAAGACCAACAAG 59.971 55.000 0.00 0.00 0.00 3.16
1689 1727 1.380403 CCGGCACACAAGACCAACAA 61.380 55.000 0.00 0.00 0.00 2.83
1710 1748 4.872691 GCATCATTATTACTCGATCTGGGG 59.127 45.833 0.00 0.00 0.00 4.96
1802 1840 1.940613 ACTGTTCTCTTGGCGTTGTTC 59.059 47.619 0.00 0.00 0.00 3.18
1867 1905 6.328641 AGTTATATACTAGTGGAACAGGCG 57.671 41.667 5.39 0.00 41.43 5.52
1868 1906 8.174733 TGTAGTTATATACTAGTGGAACAGGC 57.825 38.462 5.39 0.75 39.98 4.85
1954 1992 0.401738 TGAAGAAGCCACTTCCTGGG 59.598 55.000 14.89 0.00 43.67 4.45
1955 1993 2.363683 GATGAAGAAGCCACTTCCTGG 58.636 52.381 14.89 0.00 43.67 4.45
1956 1994 2.290514 TGGATGAAGAAGCCACTTCCTG 60.291 50.000 14.89 0.00 43.67 3.86
1957 1995 1.988107 TGGATGAAGAAGCCACTTCCT 59.012 47.619 14.89 7.67 43.67 3.36
1958 1996 2.087646 GTGGATGAAGAAGCCACTTCC 58.912 52.381 14.89 4.66 46.56 3.46
1963 2001 0.038166 GGTGGTGGATGAAGAAGCCA 59.962 55.000 0.00 0.00 0.00 4.75
1964 2002 0.038166 TGGTGGTGGATGAAGAAGCC 59.962 55.000 0.00 0.00 0.00 4.35
1965 2003 1.747355 CATGGTGGTGGATGAAGAAGC 59.253 52.381 0.00 0.00 0.00 3.86
1973 2011 2.043652 GCAGCCATGGTGGTGGAT 60.044 61.111 14.67 0.00 42.02 3.41
2005 2043 4.345257 GCAGTAGAAGGAGGTGGATAATGA 59.655 45.833 0.00 0.00 0.00 2.57
2140 2178 5.095145 TCATGGAATTCAAGGACTGAGAG 57.905 43.478 7.93 0.00 34.81 3.20
2149 2187 6.018751 CCGTGTGTAGTATCATGGAATTCAAG 60.019 42.308 7.93 0.00 41.65 3.02
2263 2301 4.904241 AGAAAGACTGAAAGGAGGTCATG 58.096 43.478 0.00 0.00 39.30 3.07
2283 2321 7.140705 GCAATTGCAATATAATGTACTGCAGA 58.859 34.615 25.36 0.00 43.36 4.26
2284 2322 7.329438 GCAATTGCAATATAATGTACTGCAG 57.671 36.000 25.36 13.48 43.36 4.41
2332 2370 6.738731 GCGATAAGATCTGGGTACAAGATCAA 60.739 42.308 26.92 19.27 40.46 2.57
2384 2422 7.806690 TGAAATGTAATTCTCGGAAGAAGTTG 58.193 34.615 0.00 0.00 44.53 3.16
2396 2434 7.596248 GTGCATGAACAACTGAAATGTAATTCT 59.404 33.333 0.00 0.00 33.67 2.40
2440 2478 5.710513 AAACTCAAATGCTGCAGTATTGA 57.289 34.783 27.60 24.01 30.82 2.57
2443 2481 5.009911 TGTCAAAACTCAAATGCTGCAGTAT 59.990 36.000 16.64 14.28 0.00 2.12
2447 2485 3.797451 TGTCAAAACTCAAATGCTGCA 57.203 38.095 4.13 4.13 0.00 4.41
2449 2487 4.304110 AGCATGTCAAAACTCAAATGCTG 58.696 39.130 7.13 0.00 46.57 4.41
2534 2572 0.037605 CGTCGAGGTTGTAGGGCTTT 60.038 55.000 0.00 0.00 0.00 3.51
2549 2587 3.403057 CTGCCCGTGTTGACGTCG 61.403 66.667 11.62 0.00 44.54 5.12
2577 2615 2.357517 GGTGTCACACTCCAGCCG 60.358 66.667 8.12 0.00 34.40 5.52
2643 2681 1.753470 CCTGGCCTCTGCATCTAGG 59.247 63.158 3.32 5.70 40.13 3.02
2644 2682 1.071128 GCCTGGCCTCTGCATCTAG 59.929 63.158 7.66 0.00 40.13 2.43
2645 2683 2.800541 CGCCTGGCCTCTGCATCTA 61.801 63.158 14.12 0.00 40.13 1.98
2646 2684 4.172512 CGCCTGGCCTCTGCATCT 62.173 66.667 14.12 0.00 40.13 2.90
2651 2689 3.746949 GATGACCGCCTGGCCTCTG 62.747 68.421 14.12 1.76 39.70 3.35
2652 2690 3.474570 GATGACCGCCTGGCCTCT 61.475 66.667 14.12 0.00 39.70 3.69
2653 2691 4.554036 GGATGACCGCCTGGCCTC 62.554 72.222 14.12 8.56 39.70 4.70
2655 2693 4.554036 GAGGATGACCGCCTGGCC 62.554 72.222 14.12 0.00 41.83 5.36
2661 2699 1.821216 TCAAAAAGGAGGATGACCGC 58.179 50.000 0.00 0.00 41.83 5.68
2662 2700 4.846779 TTTTCAAAAAGGAGGATGACCG 57.153 40.909 0.00 0.00 41.83 4.79
2720 2758 8.665685 CAGGTGATACAAGTGTAATTAAGGTTC 58.334 37.037 0.00 0.00 33.76 3.62
2732 2770 2.541346 CGCATAGCAGGTGATACAAGTG 59.459 50.000 0.00 0.00 0.00 3.16
2747 2785 5.067805 TGGATGGAGTAGCATATACGCATAG 59.932 44.000 0.00 0.00 0.00 2.23
2749 2787 3.769300 TGGATGGAGTAGCATATACGCAT 59.231 43.478 0.00 0.00 0.00 4.73
2763 2801 6.000219 CACTTGTATAAGGGAATGGATGGAG 59.000 44.000 4.12 0.00 39.81 3.86
2764 2802 5.163099 CCACTTGTATAAGGGAATGGATGGA 60.163 44.000 2.54 0.00 39.81 3.41
2765 2803 5.072741 CCACTTGTATAAGGGAATGGATGG 58.927 45.833 2.54 0.00 39.81 3.51
2766 2804 5.072741 CCCACTTGTATAAGGGAATGGATG 58.927 45.833 2.54 0.00 44.30 3.51
2767 2805 4.981647 TCCCACTTGTATAAGGGAATGGAT 59.018 41.667 2.54 0.00 46.94 3.41
2768 2806 4.376223 TCCCACTTGTATAAGGGAATGGA 58.624 43.478 2.54 0.00 46.94 3.41
2769 2807 4.788925 TCCCACTTGTATAAGGGAATGG 57.211 45.455 2.54 1.65 46.94 3.16
2774 2812 4.166144 ACTCCATTCCCACTTGTATAAGGG 59.834 45.833 4.12 0.00 42.86 3.95
2775 2813 5.373812 ACTCCATTCCCACTTGTATAAGG 57.626 43.478 4.12 0.00 38.26 2.69
2776 2814 5.992217 GCTACTCCATTCCCACTTGTATAAG 59.008 44.000 0.00 0.00 39.86 1.73
2777 2815 5.665812 AGCTACTCCATTCCCACTTGTATAA 59.334 40.000 0.00 0.00 0.00 0.98
2778 2816 5.216622 AGCTACTCCATTCCCACTTGTATA 58.783 41.667 0.00 0.00 0.00 1.47
2779 2817 4.040755 AGCTACTCCATTCCCACTTGTAT 58.959 43.478 0.00 0.00 0.00 2.29
2780 2818 3.450904 AGCTACTCCATTCCCACTTGTA 58.549 45.455 0.00 0.00 0.00 2.41
2781 2819 2.237392 GAGCTACTCCATTCCCACTTGT 59.763 50.000 0.00 0.00 0.00 3.16
2782 2820 2.911484 GAGCTACTCCATTCCCACTTG 58.089 52.381 0.00 0.00 0.00 3.16
2794 2832 0.179936 AGGCATGCAAGGAGCTACTC 59.820 55.000 21.36 0.00 45.94 2.59
2795 2833 0.622665 AAGGCATGCAAGGAGCTACT 59.377 50.000 21.36 0.00 45.94 2.57
2796 2834 1.467920 AAAGGCATGCAAGGAGCTAC 58.532 50.000 21.36 0.00 45.94 3.58
2797 2835 1.820519 CAAAAGGCATGCAAGGAGCTA 59.179 47.619 21.36 0.00 45.94 3.32
2798 2836 0.606604 CAAAAGGCATGCAAGGAGCT 59.393 50.000 21.36 2.68 45.94 4.09
2840 2878 5.049336 GGAAACTGAAGGAAACTGAAGCTAC 60.049 44.000 0.00 0.00 42.68 3.58
2849 2887 3.565902 CAGGACTGGAAACTGAAGGAAAC 59.434 47.826 0.00 0.00 34.21 2.78
2893 2931 2.176581 TGTGGCCCCTGCAATAATATCA 59.823 45.455 0.00 0.00 40.13 2.15
2918 2956 2.025418 CGGTGTTGGTCTGTACGCC 61.025 63.158 0.00 0.00 40.66 5.68
2957 2995 3.993234 GCCACGCATCGCTCATCG 61.993 66.667 0.00 0.00 40.15 3.84
3013 3051 0.321653 GTCGCATTGGTCTGGGTTCT 60.322 55.000 0.00 0.00 0.00 3.01
3041 3079 3.883744 CTCGCCGTCCTTGCAACCT 62.884 63.158 0.00 0.00 0.00 3.50
3046 3084 4.719369 ACGACTCGCCGTCCTTGC 62.719 66.667 0.00 0.00 38.56 4.01
3062 3100 2.032681 AAGAGCACGCCCAAGGAC 59.967 61.111 0.00 0.00 0.00 3.85
3081 3119 1.609794 GGAGGGAGAACTGGTCGGT 60.610 63.158 0.00 0.00 0.00 4.69
3119 3157 2.676471 CCGAAGGCAAGGTTGGGG 60.676 66.667 0.00 0.00 46.14 4.96
3131 3169 0.813184 TCAGTAACGCCTACCCGAAG 59.187 55.000 0.00 0.00 0.00 3.79
3146 3184 1.308998 CGGTGCAGGAAAGTTTCAGT 58.691 50.000 17.16 1.08 0.00 3.41
3173 3211 2.282701 ACAACCGAATCATGCAATGC 57.717 45.000 0.00 0.00 46.21 3.56
3175 3213 2.609350 GCAACAACCGAATCATGCAAT 58.391 42.857 0.00 0.00 34.10 3.56
3176 3214 1.665448 CGCAACAACCGAATCATGCAA 60.665 47.619 0.00 0.00 33.55 4.08
3177 3215 0.109827 CGCAACAACCGAATCATGCA 60.110 50.000 0.00 0.00 33.55 3.96
3209 3247 3.934962 TACCCACAGCTGCACGCA 61.935 61.111 15.27 0.00 42.61 5.24
3210 3248 3.423154 GTACCCACAGCTGCACGC 61.423 66.667 15.27 0.47 39.57 5.34
3211 3249 3.112075 CGTACCCACAGCTGCACG 61.112 66.667 15.27 11.86 0.00 5.34
3212 3250 2.027625 GTCGTACCCACAGCTGCAC 61.028 63.158 15.27 3.35 0.00 4.57
3213 3251 2.342279 GTCGTACCCACAGCTGCA 59.658 61.111 15.27 0.00 0.00 4.41
3214 3252 2.434359 GGTCGTACCCACAGCTGC 60.434 66.667 15.27 0.00 30.04 5.25
3215 3253 1.079819 CTGGTCGTACCCACAGCTG 60.080 63.158 13.48 13.48 37.50 4.24
3243 3281 4.412075 GCTCTTGCCTGCCTCTTT 57.588 55.556 0.00 0.00 0.00 2.52
3272 3310 4.816984 ATCCCGAGGACGCCGTCT 62.817 66.667 17.76 2.92 38.29 4.18
3295 3333 2.928396 CAAGGTCACCCGTCCCCT 60.928 66.667 0.00 0.00 35.12 4.79
3311 3349 1.419762 TGTTGCTTTAGCTGGGAGACA 59.580 47.619 0.00 0.00 42.66 3.41
3342 3380 4.567959 GCAATGGCCAAAGATATTGTCAAC 59.432 41.667 10.96 0.00 34.04 3.18
3343 3381 4.757594 GCAATGGCCAAAGATATTGTCAA 58.242 39.130 10.96 0.00 34.04 3.18
3362 3400 4.776322 CCATGGACGCCGAGGCAA 62.776 66.667 5.56 0.00 42.06 4.52
3464 3502 7.601508 GCTATAACCGGCTATTTATGTAACAGT 59.398 37.037 0.00 0.00 0.00 3.55
3466 3504 7.673180 AGCTATAACCGGCTATTTATGTAACA 58.327 34.615 0.00 0.00 37.00 2.41
3514 3552 6.812160 CACCTACTTACTTCGTTTAAGAGCAT 59.188 38.462 7.23 0.00 38.67 3.79
3519 3557 8.271487 GTGAAACACCTACTTACTTCGTTTAAG 58.729 37.037 0.00 0.00 37.83 1.85
3546 3584 1.047801 GGTTGGGTGCCATGAAAAGT 58.952 50.000 0.00 0.00 31.53 2.66
3572 3610 1.544691 GAGTAGTGGCTCCTGAAACGA 59.455 52.381 0.00 0.00 0.00 3.85
3695 3733 3.244078 GGCGACCATATGTGTCCTTATGA 60.244 47.826 14.80 0.00 32.91 2.15
3723 3761 0.958382 TGGGTGAAACATACCGCTGC 60.958 55.000 0.00 0.00 39.98 5.25
3733 3771 3.119137 GGTGAAATATGCCTGGGTGAAAC 60.119 47.826 0.00 0.00 0.00 2.78
3735 3773 2.733956 GGTGAAATATGCCTGGGTGAA 58.266 47.619 0.00 0.00 0.00 3.18
3737 3775 1.024271 CGGTGAAATATGCCTGGGTG 58.976 55.000 0.00 0.00 0.00 4.61
3738 3776 0.106719 CCGGTGAAATATGCCTGGGT 60.107 55.000 0.00 0.00 0.00 4.51
3739 3777 0.182537 TCCGGTGAAATATGCCTGGG 59.817 55.000 0.00 0.00 0.00 4.45
3740 3778 1.134098 ACTCCGGTGAAATATGCCTGG 60.134 52.381 11.17 0.00 0.00 4.45
3743 3781 3.805207 AGTTACTCCGGTGAAATATGCC 58.195 45.455 11.17 0.00 0.00 4.40
3744 3782 4.448060 GCTAGTTACTCCGGTGAAATATGC 59.552 45.833 11.17 4.29 0.00 3.14
3745 3783 5.844004 AGCTAGTTACTCCGGTGAAATATG 58.156 41.667 11.17 0.00 0.00 1.78
3752 3853 5.007528 GTCTAGTTAGCTAGTTACTCCGGTG 59.992 48.000 12.72 0.00 43.86 4.94
3819 3920 1.821753 AGTGATGAACCCTCGAGAGTG 59.178 52.381 15.71 4.44 0.00 3.51
3865 3966 1.821136 GGTTTCTTCCCAGCATTCAGG 59.179 52.381 0.00 0.00 0.00 3.86
3884 3985 2.749076 TCAACAGATTGAATTGGCTCGG 59.251 45.455 0.00 0.00 41.99 4.63
3899 4000 5.570262 TTTATTCTTGACGTCGTCAACAG 57.430 39.130 31.49 24.10 45.88 3.16
4010 4111 3.366374 GCAGTAAGCAATCCAAGGTTCAC 60.366 47.826 0.00 0.00 44.79 3.18
4012 4113 3.494045 GCAGTAAGCAATCCAAGGTTC 57.506 47.619 0.00 0.00 44.79 3.62
4037 4142 1.447838 TCGATCCGTTTCAGGCAGC 60.448 57.895 0.00 0.00 0.00 5.25
4054 4159 8.723942 ATTAGGCAATATAATGATCTTCCGTC 57.276 34.615 0.00 0.00 0.00 4.79
4094 4199 4.517453 CACTTTCCCGGTTTTCTGTGATAA 59.483 41.667 0.00 0.00 0.00 1.75
4096 4201 2.884639 CACTTTCCCGGTTTTCTGTGAT 59.115 45.455 0.00 0.00 0.00 3.06
4097 4202 2.294074 CACTTTCCCGGTTTTCTGTGA 58.706 47.619 0.00 0.00 0.00 3.58
4098 4203 2.021457 ACACTTTCCCGGTTTTCTGTG 58.979 47.619 0.00 4.42 0.00 3.66
4099 4204 2.021457 CACACTTTCCCGGTTTTCTGT 58.979 47.619 0.00 0.00 0.00 3.41
4120 4225 3.025986 TCCATTGAGGATGCCCAGA 57.974 52.632 0.00 0.00 43.07 3.86
4198 4303 2.224670 TGTCATAGTTTCCCAAAGCGGT 60.225 45.455 0.00 0.00 0.00 5.68
4201 4306 2.414161 GCGTGTCATAGTTTCCCAAAGC 60.414 50.000 0.00 0.00 0.00 3.51
4243 4348 7.771927 AGAGAAAATCAGTGTGGAAATCATT 57.228 32.000 0.00 0.00 0.00 2.57
4246 4351 7.446001 AGAAGAGAAAATCAGTGTGGAAATC 57.554 36.000 0.00 0.00 0.00 2.17
4303 4408 2.283617 TCGTGCTCTCTCGTTATCGTAC 59.716 50.000 0.00 0.00 38.33 3.67
4344 4449 2.161855 GACCTGGCATTTCATCACACA 58.838 47.619 0.00 0.00 0.00 3.72
4345 4450 1.474077 GGACCTGGCATTTCATCACAC 59.526 52.381 0.00 0.00 0.00 3.82
4348 4453 0.394216 CGGGACCTGGCATTTCATCA 60.394 55.000 0.00 0.00 0.00 3.07
4349 4454 0.107214 TCGGGACCTGGCATTTCATC 60.107 55.000 0.00 0.00 0.00 2.92
4384 4489 4.629200 GCTTCATTGAGATTTCAGAGACGT 59.371 41.667 0.00 0.00 34.15 4.34
4390 4495 5.333513 GCAGAAGCTTCATTGAGATTTCAG 58.666 41.667 27.57 0.00 37.91 3.02
4391 4496 5.306532 GCAGAAGCTTCATTGAGATTTCA 57.693 39.130 27.57 0.00 37.91 2.69
4428 4533 4.590647 CACCTCCATCTATCTTCCAGCTAA 59.409 45.833 0.00 0.00 0.00 3.09
4434 4540 4.321601 CGATGACACCTCCATCTATCTTCC 60.322 50.000 0.00 0.00 38.53 3.46
4466 4572 0.179468 TGTTAAGGTATGAGCCCCGC 59.821 55.000 0.00 0.00 0.00 6.13
4529 4636 3.264964 AGCCGGTGGGAAAGAATAGTTTA 59.735 43.478 1.90 0.00 34.06 2.01
4538 4645 1.937546 GCAATCAGCCGGTGGGAAAG 61.938 60.000 1.90 0.00 37.23 2.62
4561 4668 4.072088 CGTGCGGCCGAACAGAAC 62.072 66.667 34.78 17.21 0.00 3.01
4576 4683 2.173669 CGATTGGAAGGCGCATCGT 61.174 57.895 10.83 0.00 0.00 3.73
4579 4686 2.173669 CGACGATTGGAAGGCGCAT 61.174 57.895 10.83 0.00 0.00 4.73
4583 4690 1.425428 CAAGCGACGATTGGAAGGC 59.575 57.895 17.73 0.00 0.00 4.35
4590 4697 2.032894 CGGAATATTGCAAGCGACGATT 60.033 45.455 4.94 0.00 0.00 3.34
4594 4701 1.014352 ACCGGAATATTGCAAGCGAC 58.986 50.000 9.46 0.00 0.00 5.19
4603 4710 5.105837 GGACGCTCTCTATTACCGGAATATT 60.106 44.000 9.46 0.00 29.44 1.28
4606 4713 2.557490 GGACGCTCTCTATTACCGGAAT 59.443 50.000 9.46 6.40 0.00 3.01
4609 4716 0.237761 CGGACGCTCTCTATTACCGG 59.762 60.000 0.00 0.00 36.08 5.28
4614 4721 0.598680 GCATGCGGACGCTCTCTATT 60.599 55.000 18.04 0.00 42.51 1.73
4653 4760 6.491403 AGCTGTGATGTTTCAGTTAGGAAATT 59.509 34.615 0.00 0.00 38.86 1.82
4657 4764 4.623932 AGCTGTGATGTTTCAGTTAGGA 57.376 40.909 0.00 0.00 34.57 2.94
4660 4767 6.701340 AGATGTAGCTGTGATGTTTCAGTTA 58.299 36.000 0.00 0.00 34.57 2.24
4713 4820 8.801882 TTTCGGGAAATACATTCTTTAGACAT 57.198 30.769 0.00 0.00 38.18 3.06
4764 4905 6.149973 TGCATGTTTCTGGTTCATAGAAGAAG 59.850 38.462 0.00 0.00 35.74 2.85
4765 4906 6.003326 TGCATGTTTCTGGTTCATAGAAGAA 58.997 36.000 0.00 0.00 35.74 2.52
4779 4920 8.671921 CACACTCTATAAAGATTGCATGTTTCT 58.328 33.333 0.00 0.00 36.19 2.52
4780 4921 7.430502 GCACACTCTATAAAGATTGCATGTTTC 59.569 37.037 0.00 0.00 36.19 2.78
4833 4978 3.134127 GAGCGACCCAATGGCACC 61.134 66.667 0.00 0.00 33.70 5.01
4851 4996 1.674359 TCACACGTCTGGTTTGCAAT 58.326 45.000 0.00 0.00 0.00 3.56
4861 5006 1.002468 GCTTTGCAACATCACACGTCT 60.002 47.619 0.00 0.00 0.00 4.18
4864 5009 0.030504 TGGCTTTGCAACATCACACG 59.969 50.000 0.00 0.00 0.00 4.49
4887 5032 0.249031 AAGCAGCAAAAGACAACGGC 60.249 50.000 0.00 0.00 0.00 5.68
4890 5035 4.766969 CTTTGAAGCAGCAAAAGACAAC 57.233 40.909 8.77 0.00 37.32 3.32
4906 5051 2.192861 CACGTTGGCCAGGCTTTGA 61.193 57.895 12.43 0.00 0.00 2.69
4920 5065 2.140717 GTGGCTAGCTTTGTAACACGT 58.859 47.619 15.72 0.00 0.00 4.49
4962 5107 2.279741 TCTGACTTGCAACAGTGTCAC 58.720 47.619 13.51 0.00 35.83 3.67
4963 5108 2.689553 TCTGACTTGCAACAGTGTCA 57.310 45.000 15.85 15.85 37.76 3.58
4965 5110 1.605710 GCATCTGACTTGCAACAGTGT 59.394 47.619 14.65 3.12 39.90 3.55
4978 5123 0.674269 TTGCAGCATCACGCATCTGA 60.674 50.000 0.00 0.00 46.13 3.27
4980 5125 1.374343 CCTTGCAGCATCACGCATCT 61.374 55.000 0.00 0.00 46.13 2.90
4986 5131 3.818787 CCGGCCTTGCAGCATCAC 61.819 66.667 0.00 0.00 0.00 3.06
5048 5193 1.079197 CAGTGTCATGTGGCGGCTA 60.079 57.895 11.43 0.00 0.00 3.93
5064 5210 4.646945 TCACTATTTCTCTCTACCCTGCAG 59.353 45.833 6.78 6.78 0.00 4.41
5089 5237 3.190118 CCTTTGAGAAGTCCAATGCACTC 59.810 47.826 0.00 0.00 0.00 3.51
5093 5241 5.397142 AATTCCTTTGAGAAGTCCAATGC 57.603 39.130 0.00 0.00 0.00 3.56
5136 5285 4.715534 TTCCTACACCTTTCATTCCACA 57.284 40.909 0.00 0.00 0.00 4.17
5137 5286 6.650120 TCTATTCCTACACCTTTCATTCCAC 58.350 40.000 0.00 0.00 0.00 4.02
5181 5330 9.856162 ATAACTAAATTCCGCTATCCCTAAAAA 57.144 29.630 0.00 0.00 0.00 1.94
5182 5331 9.280174 CATAACTAAATTCCGCTATCCCTAAAA 57.720 33.333 0.00 0.00 0.00 1.52
5183 5332 7.389607 GCATAACTAAATTCCGCTATCCCTAAA 59.610 37.037 0.00 0.00 0.00 1.85
5184 5333 6.877322 GCATAACTAAATTCCGCTATCCCTAA 59.123 38.462 0.00 0.00 0.00 2.69
5185 5334 6.212791 AGCATAACTAAATTCCGCTATCCCTA 59.787 38.462 0.00 0.00 0.00 3.53
5186 5335 5.013183 AGCATAACTAAATTCCGCTATCCCT 59.987 40.000 0.00 0.00 0.00 4.20
5187 5336 5.246307 AGCATAACTAAATTCCGCTATCCC 58.754 41.667 0.00 0.00 0.00 3.85
5188 5337 7.900782 TTAGCATAACTAAATTCCGCTATCC 57.099 36.000 0.00 0.00 37.93 2.59
5189 5338 9.151471 TGATTAGCATAACTAAATTCCGCTATC 57.849 33.333 0.00 0.00 43.99 2.08
5190 5339 9.672673 ATGATTAGCATAACTAAATTCCGCTAT 57.327 29.630 0.00 0.00 43.99 2.97
5192 5341 7.986085 ATGATTAGCATAACTAAATTCCGCT 57.014 32.000 0.00 0.00 43.99 5.52
5193 5342 8.391106 CCTATGATTAGCATAACTAAATTCCGC 58.609 37.037 0.00 0.00 43.99 5.54
5194 5343 9.653287 TCCTATGATTAGCATAACTAAATTCCG 57.347 33.333 0.00 0.00 43.99 4.30
5204 5353 8.642432 CCCTATCGATTCCTATGATTAGCATAA 58.358 37.037 1.71 0.00 38.92 1.90
5210 5359 8.603898 TTTAGCCCTATCGATTCCTATGATTA 57.396 34.615 1.71 0.00 0.00 1.75
5250 5401 7.968014 AGGAATTTTAGAGCATTTGAATCCT 57.032 32.000 0.00 0.00 0.00 3.24
5295 5451 5.949354 CAGTGGGTTTATGGAAGGATTTACA 59.051 40.000 0.00 0.00 0.00 2.41
5312 5468 1.434513 TTGATTCAGGCCCAGTGGGT 61.435 55.000 29.23 8.40 46.51 4.51
5352 5508 6.947733 TCATGTACCATGTTCCTCAAGATTTT 59.052 34.615 4.30 0.00 0.00 1.82
5353 5509 6.484288 TCATGTACCATGTTCCTCAAGATTT 58.516 36.000 4.30 0.00 0.00 2.17
5355 5511 5.698741 TCATGTACCATGTTCCTCAAGAT 57.301 39.130 4.30 0.00 0.00 2.40
5359 5522 7.805163 AGATTTATCATGTACCATGTTCCTCA 58.195 34.615 4.30 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.