Multiple sequence alignment - TraesCS4B01G103200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G103200 chr4B 100.000 4435 0 0 1 4435 109233085 109228651 0.000000e+00 8191
1 TraesCS4B01G103200 chr4B 86.902 794 72 15 1 765 88734185 88734975 0.000000e+00 861
2 TraesCS4B01G103200 chr4D 95.512 1426 55 6 2485 3908 77127747 77126329 0.000000e+00 2270
3 TraesCS4B01G103200 chr4D 96.000 975 27 6 1491 2465 77128903 77127941 0.000000e+00 1574
4 TraesCS4B01G103200 chr4D 88.214 560 61 4 933 1492 77129497 77128943 0.000000e+00 664
5 TraesCS4B01G103200 chr4D 86.182 550 47 15 3908 4435 77126076 77125534 6.440000e-158 568
6 TraesCS4B01G103200 chr7B 92.744 758 46 3 1 750 144806185 144806941 0.000000e+00 1086
7 TraesCS4B01G103200 chr3B 91.271 779 53 6 1 770 647935180 647935952 0.000000e+00 1048
8 TraesCS4B01G103200 chr7D 90.712 786 53 7 1 768 598650589 598651372 0.000000e+00 1029
9 TraesCS4B01G103200 chr5D 87.778 810 57 13 1 771 382005214 382004408 0.000000e+00 909
10 TraesCS4B01G103200 chr6B 87.000 800 68 16 1 768 22807512 22806717 0.000000e+00 869
11 TraesCS4B01G103200 chr3A 86.906 779 77 15 1 768 328927880 328928644 0.000000e+00 850
12 TraesCS4B01G103200 chr3A 86.490 792 75 15 1 762 740083451 740082662 0.000000e+00 841
13 TraesCS4B01G103200 chr7A 86.466 798 75 13 1 768 620530305 620531099 0.000000e+00 845
14 TraesCS4B01G103200 chr7A 86.216 798 78 12 1 768 546252899 546253694 0.000000e+00 835
15 TraesCS4B01G103200 chr5A 86.449 797 77 13 1 768 43243644 43242850 0.000000e+00 845
16 TraesCS4B01G103200 chr5A 85.732 799 80 11 1 769 30147480 30148274 0.000000e+00 813
17 TraesCS4B01G103200 chr5A 83.291 796 73 14 1 768 27621169 27621932 0.000000e+00 678
18 TraesCS4B01G103200 chr1A 85.857 799 81 15 1 769 49338249 49337453 0.000000e+00 821
19 TraesCS4B01G103200 chr6A 85.947 797 76 17 1 765 84672795 84673587 0.000000e+00 819


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G103200 chr4B 109228651 109233085 4434 True 8191 8191 100.000 1 4435 1 chr4B.!!$R1 4434
1 TraesCS4B01G103200 chr4B 88734185 88734975 790 False 861 861 86.902 1 765 1 chr4B.!!$F1 764
2 TraesCS4B01G103200 chr4D 77125534 77129497 3963 True 1269 2270 91.477 933 4435 4 chr4D.!!$R1 3502
3 TraesCS4B01G103200 chr7B 144806185 144806941 756 False 1086 1086 92.744 1 750 1 chr7B.!!$F1 749
4 TraesCS4B01G103200 chr3B 647935180 647935952 772 False 1048 1048 91.271 1 770 1 chr3B.!!$F1 769
5 TraesCS4B01G103200 chr7D 598650589 598651372 783 False 1029 1029 90.712 1 768 1 chr7D.!!$F1 767
6 TraesCS4B01G103200 chr5D 382004408 382005214 806 True 909 909 87.778 1 771 1 chr5D.!!$R1 770
7 TraesCS4B01G103200 chr6B 22806717 22807512 795 True 869 869 87.000 1 768 1 chr6B.!!$R1 767
8 TraesCS4B01G103200 chr3A 328927880 328928644 764 False 850 850 86.906 1 768 1 chr3A.!!$F1 767
9 TraesCS4B01G103200 chr3A 740082662 740083451 789 True 841 841 86.490 1 762 1 chr3A.!!$R1 761
10 TraesCS4B01G103200 chr7A 620530305 620531099 794 False 845 845 86.466 1 768 1 chr7A.!!$F2 767
11 TraesCS4B01G103200 chr7A 546252899 546253694 795 False 835 835 86.216 1 768 1 chr7A.!!$F1 767
12 TraesCS4B01G103200 chr5A 43242850 43243644 794 True 845 845 86.449 1 768 1 chr5A.!!$R1 767
13 TraesCS4B01G103200 chr5A 30147480 30148274 794 False 813 813 85.732 1 769 1 chr5A.!!$F2 768
14 TraesCS4B01G103200 chr5A 27621169 27621932 763 False 678 678 83.291 1 768 1 chr5A.!!$F1 767
15 TraesCS4B01G103200 chr1A 49337453 49338249 796 True 821 821 85.857 1 769 1 chr1A.!!$R1 768
16 TraesCS4B01G103200 chr6A 84672795 84673587 792 False 819 819 85.947 1 765 1 chr6A.!!$F1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 1047 0.323725 GCATCCTTCCCACACACCAT 60.324 55.000 0.00 0.00 0.00 3.55 F
1700 1790 0.034896 AGCTTCCACAAGGTACGGTG 59.965 55.000 4.49 4.49 38.63 4.94 F
2079 2169 0.107456 ATCCATGGGCGTGCTCTTAG 59.893 55.000 13.02 0.00 0.00 2.18 F
2675 2938 1.064296 CAGTGGTAGCGCCTACTCG 59.936 63.158 2.29 0.00 37.16 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 2395 0.106519 ACCCTTGTTGCTTGAGCTGT 60.107 50.0 4.44 0.0 42.66 4.40 R
2686 2949 0.608130 AAGCTGCTCGTATGTGTCCA 59.392 50.0 1.00 0.0 0.00 4.02 R
3346 3609 0.618458 ACCCCGGCATTATATCGCAT 59.382 50.0 0.00 0.0 0.00 4.73 R
4144 4671 0.824109 GATTTGCTTTACTGGGGGCC 59.176 55.0 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 111 8.010733 ACAATGCTAAATATACCACATTGCTT 57.989 30.769 15.75 2.30 45.08 3.91
110 112 7.922278 ACAATGCTAAATATACCACATTGCTTG 59.078 33.333 15.75 0.00 45.08 4.01
124 126 5.984926 CACATTGCTTGACAAAACCACTAAT 59.015 36.000 0.00 0.00 42.86 1.73
372 384 3.815401 CCTCAAGAAACGGAAATGACACT 59.185 43.478 0.00 0.00 0.00 3.55
412 424 7.572523 TCTAATCGATTTGCAAGGATTTGAT 57.427 32.000 17.19 10.76 36.36 2.57
463 475 1.131638 ATGGCAAGAGCTCGGGATAA 58.868 50.000 8.37 0.00 41.70 1.75
469 481 1.204146 AGAGCTCGGGATAAGCCAAA 58.796 50.000 8.37 0.00 40.75 3.28
646 694 2.224018 ACACTAGTTGGTTCGGCGTTTA 60.224 45.455 6.85 0.00 0.00 2.01
759 808 1.334869 GCTGACAAGGTCAAACAGTGG 59.665 52.381 0.33 0.00 42.26 4.00
770 819 1.068434 CAAACAGTGGTTTCGGCCAAT 59.932 47.619 2.24 0.00 45.18 3.16
771 820 2.279935 AACAGTGGTTTCGGCCAATA 57.720 45.000 2.24 0.00 40.68 1.90
772 821 2.279935 ACAGTGGTTTCGGCCAATAA 57.720 45.000 2.24 0.00 40.68 1.40
773 822 2.588620 ACAGTGGTTTCGGCCAATAAA 58.411 42.857 2.24 0.00 40.68 1.40
774 823 3.161866 ACAGTGGTTTCGGCCAATAAAT 58.838 40.909 2.24 0.00 40.68 1.40
775 824 4.337145 ACAGTGGTTTCGGCCAATAAATA 58.663 39.130 2.24 0.00 40.68 1.40
776 825 4.953579 ACAGTGGTTTCGGCCAATAAATAT 59.046 37.500 2.24 0.00 40.68 1.28
777 826 5.420739 ACAGTGGTTTCGGCCAATAAATATT 59.579 36.000 2.24 0.00 40.68 1.28
778 827 6.071051 ACAGTGGTTTCGGCCAATAAATATTT 60.071 34.615 2.24 5.89 40.68 1.40
779 828 6.816140 CAGTGGTTTCGGCCAATAAATATTTT 59.184 34.615 5.91 0.00 40.68 1.82
780 829 7.976734 CAGTGGTTTCGGCCAATAAATATTTTA 59.023 33.333 5.91 0.00 40.68 1.52
781 830 8.194769 AGTGGTTTCGGCCAATAAATATTTTAG 58.805 33.333 5.91 0.00 40.68 1.85
782 831 8.192110 GTGGTTTCGGCCAATAAATATTTTAGA 58.808 33.333 5.91 0.00 40.68 2.10
783 832 8.919145 TGGTTTCGGCCAATAAATATTTTAGAT 58.081 29.630 5.91 0.00 35.25 1.98
788 837 9.787435 TCGGCCAATAAATATTTTAGATACAGT 57.213 29.630 5.91 0.00 0.00 3.55
805 854 6.989169 AGATACAGTTTATTCATCAGGTCTGC 59.011 38.462 0.00 0.00 0.00 4.26
806 855 4.910195 ACAGTTTATTCATCAGGTCTGCA 58.090 39.130 0.00 0.00 0.00 4.41
807 856 4.940046 ACAGTTTATTCATCAGGTCTGCAG 59.060 41.667 7.63 7.63 0.00 4.41
808 857 4.334759 CAGTTTATTCATCAGGTCTGCAGG 59.665 45.833 15.13 0.00 0.00 4.85
809 858 3.565764 TTATTCATCAGGTCTGCAGGG 57.434 47.619 15.13 1.48 0.00 4.45
810 859 1.293062 ATTCATCAGGTCTGCAGGGT 58.707 50.000 15.13 0.00 0.00 4.34
811 860 1.951209 TTCATCAGGTCTGCAGGGTA 58.049 50.000 15.13 0.00 0.00 3.69
812 861 1.195115 TCATCAGGTCTGCAGGGTAC 58.805 55.000 15.13 4.51 0.00 3.34
813 862 0.904649 CATCAGGTCTGCAGGGTACA 59.095 55.000 15.13 0.00 0.00 2.90
814 863 1.487976 CATCAGGTCTGCAGGGTACAT 59.512 52.381 15.13 0.00 0.00 2.29
815 864 1.195115 TCAGGTCTGCAGGGTACATC 58.805 55.000 15.13 0.00 0.00 3.06
816 865 1.198713 CAGGTCTGCAGGGTACATCT 58.801 55.000 15.13 0.00 0.00 2.90
817 866 2.024369 TCAGGTCTGCAGGGTACATCTA 60.024 50.000 15.13 0.00 0.00 1.98
818 867 2.766263 CAGGTCTGCAGGGTACATCTAA 59.234 50.000 15.13 0.00 0.00 2.10
819 868 2.766828 AGGTCTGCAGGGTACATCTAAC 59.233 50.000 15.13 0.00 0.00 2.34
820 869 2.500098 GGTCTGCAGGGTACATCTAACA 59.500 50.000 15.13 0.00 0.00 2.41
821 870 3.522553 GTCTGCAGGGTACATCTAACAC 58.477 50.000 15.13 0.00 0.00 3.32
822 871 3.056107 GTCTGCAGGGTACATCTAACACA 60.056 47.826 15.13 0.00 0.00 3.72
823 872 3.056107 TCTGCAGGGTACATCTAACACAC 60.056 47.826 15.13 0.00 0.00 3.82
824 873 2.635427 TGCAGGGTACATCTAACACACA 59.365 45.455 0.00 0.00 0.00 3.72
825 874 3.000727 GCAGGGTACATCTAACACACAC 58.999 50.000 0.00 0.00 0.00 3.82
826 875 3.556213 GCAGGGTACATCTAACACACACA 60.556 47.826 0.00 0.00 0.00 3.72
827 876 3.994392 CAGGGTACATCTAACACACACAC 59.006 47.826 0.00 0.00 0.00 3.82
828 877 3.644265 AGGGTACATCTAACACACACACA 59.356 43.478 0.00 0.00 0.00 3.72
829 878 3.744426 GGGTACATCTAACACACACACAC 59.256 47.826 0.00 0.00 0.00 3.82
830 879 4.373527 GGTACATCTAACACACACACACA 58.626 43.478 0.00 0.00 0.00 3.72
831 880 4.210537 GGTACATCTAACACACACACACAC 59.789 45.833 0.00 0.00 0.00 3.82
832 881 3.867857 ACATCTAACACACACACACACA 58.132 40.909 0.00 0.00 0.00 3.72
833 882 3.621268 ACATCTAACACACACACACACAC 59.379 43.478 0.00 0.00 0.00 3.82
834 883 3.320673 TCTAACACACACACACACACA 57.679 42.857 0.00 0.00 0.00 3.72
835 884 2.997303 TCTAACACACACACACACACAC 59.003 45.455 0.00 0.00 0.00 3.82
836 885 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
837 886 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
838 887 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
839 888 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
840 889 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
841 890 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
842 891 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
843 892 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
844 893 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
845 894 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
846 895 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
847 896 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
848 897 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
849 898 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
850 899 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
851 900 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
852 901 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
853 902 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
854 903 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
855 904 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
856 905 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
857 906 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
858 907 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
859 908 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
860 909 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
861 910 4.749598 ACACACACACACACACACATATAG 59.250 41.667 0.00 0.00 0.00 1.31
862 911 3.745975 ACACACACACACACACATATAGC 59.254 43.478 0.00 0.00 0.00 2.97
863 912 3.745458 CACACACACACACACATATAGCA 59.255 43.478 0.00 0.00 0.00 3.49
864 913 3.996363 ACACACACACACACATATAGCAG 59.004 43.478 0.00 0.00 0.00 4.24
865 914 3.996363 CACACACACACACATATAGCAGT 59.004 43.478 0.00 0.00 0.00 4.40
866 915 4.452114 CACACACACACACATATAGCAGTT 59.548 41.667 0.00 0.00 0.00 3.16
867 916 4.452114 ACACACACACACATATAGCAGTTG 59.548 41.667 0.00 0.00 0.00 3.16
868 917 4.690280 CACACACACACATATAGCAGTTGA 59.310 41.667 0.00 0.00 0.00 3.18
869 918 4.690748 ACACACACACATATAGCAGTTGAC 59.309 41.667 0.00 0.00 0.00 3.18
870 919 4.690280 CACACACACATATAGCAGTTGACA 59.310 41.667 0.00 0.00 0.00 3.58
871 920 5.179182 CACACACACATATAGCAGTTGACAA 59.821 40.000 0.00 0.00 0.00 3.18
872 921 5.409520 ACACACACATATAGCAGTTGACAAG 59.590 40.000 0.00 0.00 0.00 3.16
873 922 5.639082 CACACACATATAGCAGTTGACAAGA 59.361 40.000 0.00 0.00 0.00 3.02
874 923 6.314648 CACACACATATAGCAGTTGACAAGAT 59.685 38.462 0.00 0.00 0.00 2.40
875 924 7.492344 CACACACATATAGCAGTTGACAAGATA 59.508 37.037 0.00 0.00 0.00 1.98
876 925 8.040727 ACACACATATAGCAGTTGACAAGATAA 58.959 33.333 0.00 0.00 0.00 1.75
877 926 9.049523 CACACATATAGCAGTTGACAAGATAAT 57.950 33.333 0.00 0.00 0.00 1.28
878 927 9.618890 ACACATATAGCAGTTGACAAGATAATT 57.381 29.630 0.00 0.00 0.00 1.40
886 935 8.246180 AGCAGTTGACAAGATAATTAATGTTGG 58.754 33.333 8.73 0.00 41.91 3.77
887 936 8.243426 GCAGTTGACAAGATAATTAATGTTGGA 58.757 33.333 8.73 0.00 41.91 3.53
890 939 9.353999 GTTGACAAGATAATTAATGTTGGAACC 57.646 33.333 8.73 0.00 41.91 3.62
891 940 8.642935 TGACAAGATAATTAATGTTGGAACCA 57.357 30.769 8.73 0.00 41.91 3.67
892 941 8.739039 TGACAAGATAATTAATGTTGGAACCAG 58.261 33.333 8.73 0.00 41.91 4.00
893 942 8.877864 ACAAGATAATTAATGTTGGAACCAGA 57.122 30.769 8.73 0.00 41.91 3.86
894 943 9.308000 ACAAGATAATTAATGTTGGAACCAGAA 57.692 29.630 8.73 0.00 41.91 3.02
900 949 8.947055 AATTAATGTTGGAACCAGAATTATGC 57.053 30.769 0.00 0.00 0.00 3.14
901 950 4.637483 ATGTTGGAACCAGAATTATGCG 57.363 40.909 0.00 0.00 0.00 4.73
902 951 3.680490 TGTTGGAACCAGAATTATGCGA 58.320 40.909 0.00 0.00 0.00 5.10
903 952 4.075682 TGTTGGAACCAGAATTATGCGAA 58.924 39.130 0.00 0.00 0.00 4.70
904 953 4.520874 TGTTGGAACCAGAATTATGCGAAA 59.479 37.500 0.00 0.00 0.00 3.46
905 954 4.963276 TGGAACCAGAATTATGCGAAAG 57.037 40.909 0.00 0.00 0.00 2.62
906 955 3.694072 TGGAACCAGAATTATGCGAAAGG 59.306 43.478 0.00 0.00 0.00 3.11
907 956 3.694566 GGAACCAGAATTATGCGAAAGGT 59.305 43.478 0.00 0.00 0.00 3.50
908 957 4.438744 GGAACCAGAATTATGCGAAAGGTG 60.439 45.833 0.00 0.00 0.00 4.00
909 958 3.950397 ACCAGAATTATGCGAAAGGTGA 58.050 40.909 0.00 0.00 0.00 4.02
910 959 4.331968 ACCAGAATTATGCGAAAGGTGAA 58.668 39.130 0.00 0.00 0.00 3.18
911 960 4.396166 ACCAGAATTATGCGAAAGGTGAAG 59.604 41.667 0.00 0.00 0.00 3.02
912 961 4.635765 CCAGAATTATGCGAAAGGTGAAGA 59.364 41.667 0.00 0.00 0.00 2.87
913 962 5.220739 CCAGAATTATGCGAAAGGTGAAGAG 60.221 44.000 0.00 0.00 0.00 2.85
914 963 5.582269 CAGAATTATGCGAAAGGTGAAGAGA 59.418 40.000 0.00 0.00 0.00 3.10
915 964 6.092670 CAGAATTATGCGAAAGGTGAAGAGAA 59.907 38.462 0.00 0.00 0.00 2.87
916 965 6.825721 AGAATTATGCGAAAGGTGAAGAGAAT 59.174 34.615 0.00 0.00 0.00 2.40
917 966 7.987458 AGAATTATGCGAAAGGTGAAGAGAATA 59.013 33.333 0.00 0.00 0.00 1.75
918 967 8.506168 AATTATGCGAAAGGTGAAGAGAATAA 57.494 30.769 0.00 0.00 0.00 1.40
919 968 7.539712 TTATGCGAAAGGTGAAGAGAATAAG 57.460 36.000 0.00 0.00 0.00 1.73
920 969 4.253685 TGCGAAAGGTGAAGAGAATAAGG 58.746 43.478 0.00 0.00 0.00 2.69
921 970 3.064134 GCGAAAGGTGAAGAGAATAAGGC 59.936 47.826 0.00 0.00 0.00 4.35
922 971 4.508662 CGAAAGGTGAAGAGAATAAGGCT 58.491 43.478 0.00 0.00 0.00 4.58
923 972 4.938226 CGAAAGGTGAAGAGAATAAGGCTT 59.062 41.667 4.58 4.58 0.00 4.35
924 973 5.412904 CGAAAGGTGAAGAGAATAAGGCTTT 59.587 40.000 4.45 0.00 0.00 3.51
925 974 6.072452 CGAAAGGTGAAGAGAATAAGGCTTTT 60.072 38.462 4.45 0.00 0.00 2.27
926 975 7.522236 CGAAAGGTGAAGAGAATAAGGCTTTTT 60.522 37.037 4.45 3.30 0.00 1.94
949 998 6.388619 TTTAGGGTGAAGAGAATAAGGCTT 57.611 37.500 4.58 4.58 0.00 4.35
950 999 4.936685 AGGGTGAAGAGAATAAGGCTTT 57.063 40.909 4.45 0.00 0.00 3.51
951 1000 5.262455 AGGGTGAAGAGAATAAGGCTTTT 57.738 39.130 4.45 0.00 0.00 2.27
957 1006 6.093357 GTGAAGAGAATAAGGCTTTTGGAGAG 59.907 42.308 4.45 0.00 0.00 3.20
960 1009 4.849518 AGAATAAGGCTTTTGGAGAGGAC 58.150 43.478 4.45 0.00 0.00 3.85
981 1030 2.361119 CAGTGCTATAAGTACCTCGGCA 59.639 50.000 0.00 0.00 30.68 5.69
982 1031 3.005897 CAGTGCTATAAGTACCTCGGCAT 59.994 47.826 0.00 0.00 30.68 4.40
986 1035 3.258622 GCTATAAGTACCTCGGCATCCTT 59.741 47.826 0.00 0.00 0.00 3.36
989 1038 1.049289 AGTACCTCGGCATCCTTCCC 61.049 60.000 0.00 0.00 0.00 3.97
998 1047 0.323725 GCATCCTTCCCACACACCAT 60.324 55.000 0.00 0.00 0.00 3.55
1021 1070 8.213679 CCATAGAAATAGGTGAATTGAGAAGGA 58.786 37.037 0.00 0.00 0.00 3.36
1030 1079 4.459337 GTGAATTGAGAAGGAAAACCCGAT 59.541 41.667 0.00 0.00 40.87 4.18
1033 1082 5.693769 ATTGAGAAGGAAAACCCGATAGA 57.306 39.130 0.00 0.00 40.87 1.98
1035 1084 5.277857 TGAGAAGGAAAACCCGATAGATC 57.722 43.478 0.00 0.00 40.87 2.75
1049 1098 4.202161 CCGATAGATCACACTACCTGCTTT 60.202 45.833 0.00 0.00 39.76 3.51
1061 1110 1.492133 CCTGCTTTCTCCAGGGACCA 61.492 60.000 0.00 0.00 44.87 4.02
1062 1111 0.035630 CTGCTTTCTCCAGGGACCAG 60.036 60.000 0.00 0.00 0.00 4.00
1063 1112 1.301293 GCTTTCTCCAGGGACCAGG 59.699 63.158 0.00 0.00 0.00 4.45
1064 1113 1.201429 GCTTTCTCCAGGGACCAGGA 61.201 60.000 2.30 2.30 0.00 3.86
1084 1133 3.394719 GACTGTCTTCTTCTTCCCACAC 58.605 50.000 0.00 0.00 0.00 3.82
1089 1138 1.275291 CTTCTTCTTCCCACACGGCTA 59.725 52.381 0.00 0.00 0.00 3.93
1097 1146 3.889227 CACACGGCTACCATGTGG 58.111 61.111 4.95 0.00 40.05 4.17
1100 1149 4.109675 ACGGCTACCATGTGGGCC 62.110 66.667 0.00 0.00 42.05 5.80
1116 1165 1.153086 GCCAAGGTCATCGCCATCT 60.153 57.895 0.00 0.00 0.00 2.90
1124 1173 3.054802 AGGTCATCGCCATCTTTCTTCTT 60.055 43.478 0.00 0.00 0.00 2.52
1127 1176 5.091431 GTCATCGCCATCTTTCTTCTTTTG 58.909 41.667 0.00 0.00 0.00 2.44
1132 1181 3.256631 GCCATCTTTCTTCTTTTGCTCCA 59.743 43.478 0.00 0.00 0.00 3.86
1133 1182 4.262164 GCCATCTTTCTTCTTTTGCTCCAA 60.262 41.667 0.00 0.00 0.00 3.53
1139 1188 0.586319 TTCTTTTGCTCCAACTCGCG 59.414 50.000 0.00 0.00 0.00 5.87
1141 1190 1.845809 CTTTTGCTCCAACTCGCGCT 61.846 55.000 5.56 0.00 0.00 5.92
1156 1205 1.371183 CGCTGTTGTCCTCCTCCAA 59.629 57.895 0.00 0.00 0.00 3.53
1178 1227 2.125512 ATGGTGTTCGAGCTCCGC 60.126 61.111 14.46 0.42 38.37 5.54
1202 1251 4.020485 GGCAACGTCTATCCTATTGGGTAT 60.020 45.833 0.00 0.00 36.25 2.73
1209 1258 8.337739 ACGTCTATCCTATTGGGTATAGATTCT 58.662 37.037 7.53 0.00 38.86 2.40
1243 1292 9.588096 TCTTATGATGGAAGCTACTCTTGTATA 57.412 33.333 0.00 0.00 34.56 1.47
1244 1293 9.632807 CTTATGATGGAAGCTACTCTTGTATAC 57.367 37.037 0.00 0.00 34.56 1.47
1248 1297 8.540388 TGATGGAAGCTACTCTTGTATACTTTT 58.460 33.333 4.17 0.00 34.56 2.27
1295 1344 7.826744 TGTTGGTCTCTAATGTATTAATGTGCA 59.173 33.333 0.00 0.00 0.00 4.57
1296 1345 8.673711 GTTGGTCTCTAATGTATTAATGTGCAA 58.326 33.333 0.00 0.00 0.00 4.08
1321 1370 4.989279 ATGCTGCGATTTTATCCTTGTT 57.011 36.364 0.00 0.00 0.00 2.83
1323 1372 3.119531 TGCTGCGATTTTATCCTTGTTGG 60.120 43.478 0.00 0.00 37.10 3.77
1327 1376 6.680378 GCTGCGATTTTATCCTTGTTGGTAAT 60.680 38.462 0.00 0.00 37.07 1.89
1330 1379 8.740906 TGCGATTTTATCCTTGTTGGTAATTTA 58.259 29.630 0.00 0.00 37.07 1.40
1350 1399 8.519492 AATTTACATGATTTTTCGTTCAGGTG 57.481 30.769 0.00 0.00 37.44 4.00
1353 1402 2.235016 TGATTTTTCGTTCAGGTGGGG 58.765 47.619 0.00 0.00 0.00 4.96
1454 1503 0.318441 TCCTGCTGTTCTCTGTTCCG 59.682 55.000 0.00 0.00 0.00 4.30
1477 1526 7.766738 TCCGCTGATTATTTGTTCATTACACTA 59.233 33.333 0.00 0.00 36.21 2.74
1503 1593 1.461512 CGGTAGTACATGCAAACGCAA 59.538 47.619 2.06 0.00 44.09 4.85
1504 1594 2.723618 CGGTAGTACATGCAAACGCAAC 60.724 50.000 2.06 0.00 44.09 4.17
1537 1627 5.106594 TGTGCATCAACTTGTATTAGTGCTG 60.107 40.000 0.00 0.00 0.00 4.41
1548 1638 4.759183 TGTATTAGTGCTGCATTTGACACA 59.241 37.500 5.27 3.84 35.47 3.72
1549 1639 3.624326 TTAGTGCTGCATTTGACACAC 57.376 42.857 5.27 0.00 35.47 3.82
1561 1651 0.746204 TGACACACGCCTTTTCTGCA 60.746 50.000 0.00 0.00 0.00 4.41
1608 1698 1.301244 CATGAGAATCGGGGAGCCG 60.301 63.158 0.00 0.00 38.61 5.52
1610 1700 4.610714 GAGAATCGGGGAGCCGGC 62.611 72.222 21.89 21.89 0.00 6.13
1697 1787 1.673033 CCAGAGCTTCCACAAGGTACG 60.673 57.143 0.00 0.00 40.57 3.67
1698 1788 0.608640 AGAGCTTCCACAAGGTACGG 59.391 55.000 0.00 0.00 40.57 4.02
1699 1789 0.320697 GAGCTTCCACAAGGTACGGT 59.679 55.000 0.00 0.00 40.57 4.83
1700 1790 0.034896 AGCTTCCACAAGGTACGGTG 59.965 55.000 4.49 4.49 38.63 4.94
1701 1791 1.574702 GCTTCCACAAGGTACGGTGC 61.575 60.000 5.66 0.00 37.23 5.01
1733 1823 6.803807 GGCTACTTCATTTTTGCTTTAGAGTG 59.196 38.462 0.00 0.00 0.00 3.51
1827 1917 2.858745 AGTGGTAGTTTCATGCGGTTT 58.141 42.857 0.00 0.00 0.00 3.27
1833 1923 5.049267 TGGTAGTTTCATGCGGTTTTTACTC 60.049 40.000 0.00 0.00 0.00 2.59
1844 1934 6.432107 TGCGGTTTTTACTCTTGTATCAAAC 58.568 36.000 0.00 0.00 34.61 2.93
1862 1952 2.175811 GCGTGGCGGTGAAATGAC 59.824 61.111 0.00 0.00 0.00 3.06
1938 2028 1.078759 CAGACCACGATCGAGCAACC 61.079 60.000 24.34 5.56 0.00 3.77
1958 2048 2.887568 GTGCCATGCGAGGACGAG 60.888 66.667 0.00 0.00 42.66 4.18
1987 2077 0.994247 ATGATGCACAAGGACCTGGA 59.006 50.000 1.72 0.00 0.00 3.86
2033 2123 2.006888 CCAAACCAATGCGACTACGAT 58.993 47.619 0.00 0.00 42.66 3.73
2037 2127 5.118664 CCAAACCAATGCGACTACGATATAG 59.881 44.000 0.00 0.00 42.66 1.31
2038 2128 5.449107 AACCAATGCGACTACGATATAGT 57.551 39.130 0.00 0.00 42.66 2.12
2039 2129 6.564709 AACCAATGCGACTACGATATAGTA 57.435 37.500 0.00 0.00 42.66 1.82
2040 2130 6.564709 ACCAATGCGACTACGATATAGTAA 57.435 37.500 0.00 0.00 42.66 2.24
2041 2131 6.609533 ACCAATGCGACTACGATATAGTAAG 58.390 40.000 0.00 0.00 42.66 2.34
2079 2169 0.107456 ATCCATGGGCGTGCTCTTAG 59.893 55.000 13.02 0.00 0.00 2.18
2152 2242 3.275999 GGTACATACAAACTCGCCCAAT 58.724 45.455 0.00 0.00 0.00 3.16
2201 2291 3.773860 TGCAGTTCGTTGTTCATTTGT 57.226 38.095 0.00 0.00 0.00 2.83
2203 2293 2.216263 GCAGTTCGTTGTTCATTTGTGC 59.784 45.455 0.00 0.00 0.00 4.57
2489 2752 7.169140 TCAATATATGTACAACGTGCAGATGTC 59.831 37.037 0.00 0.00 37.11 3.06
2495 2758 3.206150 ACAACGTGCAGATGTCTCTTTT 58.794 40.909 0.00 0.00 29.18 2.27
2538 2801 4.625972 TCACATGACATGATGACAATGC 57.374 40.909 22.19 0.00 0.00 3.56
2542 2805 4.461431 ACATGACATGATGACAATGCTGTT 59.539 37.500 22.19 0.00 35.30 3.16
2675 2938 1.064296 CAGTGGTAGCGCCTACTCG 59.936 63.158 2.29 0.00 37.16 4.18
2686 2949 2.671351 GCGCCTACTCGTATGTGCATAT 60.671 50.000 0.00 0.31 37.23 1.78
2701 2964 2.102252 TGCATATGGACACATACGAGCA 59.898 45.455 4.56 0.00 42.05 4.26
2767 3030 5.202765 TCCCATGCATACATCAGTTTGAAT 58.797 37.500 0.00 0.00 32.87 2.57
2768 3031 5.300034 TCCCATGCATACATCAGTTTGAATC 59.700 40.000 0.00 0.00 32.87 2.52
2771 3034 6.406065 CCATGCATACATCAGTTTGAATCCAA 60.406 38.462 0.00 0.00 32.87 3.53
2797 3060 4.639310 ACTACCTAACTAGACATGTCACCG 59.361 45.833 27.02 16.23 0.00 4.94
2834 3097 1.205893 GTGGATGTCACTCTCCAGGAC 59.794 57.143 0.30 0.00 42.10 3.85
2853 3116 3.432326 GGACTCAACACTTCAGAAGGTGT 60.432 47.826 14.90 12.51 46.84 4.16
2856 3119 4.649674 ACTCAACACTTCAGAAGGTGTCTA 59.350 41.667 14.90 7.27 44.54 2.59
2892 3155 3.525537 ACTCAATGCTGGAGATACAACG 58.474 45.455 6.81 0.00 36.26 4.10
2901 3164 4.503910 CTGGAGATACAACGAACCAATCA 58.496 43.478 0.00 0.00 0.00 2.57
2939 3202 3.820467 TCAAGCATGAATTCGAACCACTT 59.180 39.130 0.00 0.14 30.99 3.16
2940 3203 4.083324 TCAAGCATGAATTCGAACCACTTC 60.083 41.667 0.00 0.60 30.99 3.01
2955 3218 5.061721 ACCACTTCAATTGACCTTTACCT 57.938 39.130 7.89 0.00 0.00 3.08
3000 3263 5.448654 TGGACATCCCTCCTGAAAATTATG 58.551 41.667 0.00 0.00 35.38 1.90
3042 3305 1.178276 CTTGGCTCGGTGACTCTAGT 58.822 55.000 0.00 0.00 0.00 2.57
3049 3312 3.597255 CTCGGTGACTCTAGTGACTACA 58.403 50.000 0.00 0.00 32.65 2.74
3076 3339 9.558396 AGAAATGAATAGCAGAAGATCTTTAGG 57.442 33.333 9.87 3.66 0.00 2.69
3204 3467 5.649831 GGAGGTTTGAAGTTCTATCAAGCAT 59.350 40.000 4.17 0.00 39.06 3.79
3209 3472 7.540055 GGTTTGAAGTTCTATCAAGCATTTCTG 59.460 37.037 4.17 0.00 39.06 3.02
3230 3493 4.537936 GCTTTCCAAAACTAGGATAGCG 57.462 45.455 8.50 0.00 45.61 4.26
3303 3566 1.590932 ATGCAGAATCATCTCGTGGC 58.409 50.000 0.00 0.00 32.03 5.01
3346 3609 1.449423 CGGATGGGTTCGTGCATCA 60.449 57.895 0.00 0.00 0.00 3.07
3415 3678 0.820871 GGGTGTGTTTGGTTTGCAGA 59.179 50.000 0.00 0.00 0.00 4.26
3417 3680 2.158971 GGGTGTGTTTGGTTTGCAGAAT 60.159 45.455 0.00 0.00 0.00 2.40
3450 3713 7.359849 AGTTGTAGTAGGTATCCTCAACCATA 58.640 38.462 11.69 0.00 36.14 2.74
3520 3783 7.208064 AGTGGTTAGAGATGGCCTTTATTTA 57.792 36.000 3.32 0.00 0.00 1.40
3521 3784 7.054751 AGTGGTTAGAGATGGCCTTTATTTAC 58.945 38.462 3.32 0.00 0.00 2.01
3522 3785 7.054751 GTGGTTAGAGATGGCCTTTATTTACT 58.945 38.462 3.32 0.00 0.00 2.24
3523 3786 7.556635 GTGGTTAGAGATGGCCTTTATTTACTT 59.443 37.037 3.32 0.00 0.00 2.24
3534 3797 8.047310 TGGCCTTTATTTACTTTTTGGTTTGAA 58.953 29.630 3.32 0.00 0.00 2.69
3647 3911 2.371306 TGTGGCATGATCTTGTGATGG 58.629 47.619 10.05 0.00 32.19 3.51
3668 3932 5.366460 TGGTACCAATCGTCTACAAACAAA 58.634 37.500 13.60 0.00 0.00 2.83
3698 3962 9.589461 TTAACATATAGACCCTTCCAACAAAAA 57.411 29.630 0.00 0.00 0.00 1.94
3721 3985 5.570234 TGAACATATAGACTACACACGCA 57.430 39.130 0.00 0.00 0.00 5.24
3803 4068 1.484240 ACTCTGACTTAGGCCTCATGC 59.516 52.381 9.68 0.00 40.16 4.06
3879 4144 5.591643 TTCTTCCGAAAAATCAGTCTTCG 57.408 39.130 0.00 0.00 41.18 3.79
3886 4151 4.150627 CGAAAAATCAGTCTTCGCTCAAGA 59.849 41.667 0.00 0.00 38.95 3.02
3926 4444 1.341209 CCTCAAAACTGAAACCTGCCC 59.659 52.381 0.00 0.00 0.00 5.36
3930 4448 2.935849 CAAAACTGAAACCTGCCCAAAC 59.064 45.455 0.00 0.00 0.00 2.93
3932 4450 1.859302 ACTGAAACCTGCCCAAACAA 58.141 45.000 0.00 0.00 0.00 2.83
4009 4529 8.947055 AATATGAAATTTCATTTGGCTGGTAC 57.053 30.769 32.57 0.00 45.13 3.34
4010 4530 4.804108 TGAAATTTCATTTGGCTGGTACG 58.196 39.130 16.91 0.00 31.47 3.67
4011 4531 2.939460 ATTTCATTTGGCTGGTACGC 57.061 45.000 0.00 0.00 0.00 4.42
4016 4536 1.269448 CATTTGGCTGGTACGCAAACT 59.731 47.619 0.00 0.00 0.00 2.66
4029 4550 6.874664 TGGTACGCAAACTAGACAAATGAATA 59.125 34.615 0.00 0.00 0.00 1.75
4042 4563 8.718102 AGACAAATGAATATAGCGTGTTAAGT 57.282 30.769 0.00 0.00 0.00 2.24
4044 4565 7.618442 ACAAATGAATATAGCGTGTTAAGTCG 58.382 34.615 0.00 0.00 0.00 4.18
4053 4574 4.801891 AGCGTGTTAAGTCGAGTGAAATA 58.198 39.130 0.00 0.00 0.00 1.40
4070 4591 4.994852 TGAAATAGAACTTCAACCGGACTG 59.005 41.667 9.46 5.00 29.93 3.51
4088 4609 5.277974 CGGACTGACAAACAATCAACTTGAT 60.278 40.000 0.00 0.00 39.09 2.57
4091 4612 6.963796 ACTGACAAACAATCAACTTGATCTC 58.036 36.000 4.70 0.00 35.76 2.75
4108 4635 3.394674 TCTCGTATTGCACAGTTGGAA 57.605 42.857 0.00 0.00 37.48 3.53
4124 4651 8.788806 CACAGTTGGAAATGTATTAAACTGGTA 58.211 33.333 20.17 0.00 45.48 3.25
4150 4677 5.801531 AATTATCGAAATAAAAGGCCCCC 57.198 39.130 0.00 0.00 31.28 5.40
4161 4688 0.189822 AAGGCCCCCAGTAAAGCAAA 59.810 50.000 0.00 0.00 0.00 3.68
4226 4763 4.082245 GCTTCTAGAGATCCTCCAGTATGC 60.082 50.000 0.00 0.00 31.97 3.14
4238 4775 4.141846 CCTCCAGTATGCTCTACACAACAT 60.142 45.833 0.00 0.00 31.97 2.71
4250 4787 6.237942 GCTCTACACAACATAACATGCAGTAG 60.238 42.308 0.00 0.00 33.38 2.57
4254 4791 7.539712 ACACAACATAACATGCAGTAGTATC 57.460 36.000 0.00 0.00 0.00 2.24
4258 4795 5.529791 ACATAACATGCAGTAGTATCGACC 58.470 41.667 0.00 0.00 0.00 4.79
4261 4798 2.100916 ACATGCAGTAGTATCGACCACC 59.899 50.000 0.00 0.00 0.00 4.61
4262 4799 1.842052 TGCAGTAGTATCGACCACCA 58.158 50.000 0.00 0.00 0.00 4.17
4266 4803 3.305199 GCAGTAGTATCGACCACCATACC 60.305 52.174 0.00 0.00 0.00 2.73
4268 4805 4.023107 CAGTAGTATCGACCACCATACCAG 60.023 50.000 0.00 0.00 0.00 4.00
4271 4808 4.539726 AGTATCGACCACCATACCAGTAA 58.460 43.478 0.00 0.00 0.00 2.24
4274 4811 3.966979 TCGACCACCATACCAGTAACTA 58.033 45.455 0.00 0.00 0.00 2.24
4275 4812 3.949754 TCGACCACCATACCAGTAACTAG 59.050 47.826 0.00 0.00 0.00 2.57
4278 4815 5.220931 CGACCACCATACCAGTAACTAGTAC 60.221 48.000 0.00 0.00 0.00 2.73
4279 4816 5.835582 ACCACCATACCAGTAACTAGTACT 58.164 41.667 0.00 0.00 44.33 2.73
4280 4817 6.973642 ACCACCATACCAGTAACTAGTACTA 58.026 40.000 1.89 1.89 41.37 1.82
4281 4818 7.413446 ACCACCATACCAGTAACTAGTACTAA 58.587 38.462 3.76 0.00 41.37 2.24
4282 4819 8.063770 ACCACCATACCAGTAACTAGTACTAAT 58.936 37.037 3.76 0.00 41.37 1.73
4283 4820 9.578576 CCACCATACCAGTAACTAGTACTAATA 57.421 37.037 3.76 0.00 41.37 0.98
4318 4855 8.175716 GGTACAAAGTAATGCTATGACTCAAAC 58.824 37.037 0.00 0.00 0.00 2.93
4319 4856 7.744087 ACAAAGTAATGCTATGACTCAAACA 57.256 32.000 0.00 0.00 0.00 2.83
4320 4857 7.810658 ACAAAGTAATGCTATGACTCAAACAG 58.189 34.615 0.00 0.00 0.00 3.16
4360 4898 4.218417 ACACATCTACCAAATTTGCCTGTC 59.782 41.667 12.92 0.00 0.00 3.51
4370 4908 3.635191 TGCCTGTCGCATCCCACA 61.635 61.111 0.00 0.00 44.64 4.17
4411 4949 6.920210 TGCACGTCATAATTCAAATCAAACAA 59.080 30.769 0.00 0.00 0.00 2.83
4415 4953 7.114811 ACGTCATAATTCAAATCAAACAACTGC 59.885 33.333 0.00 0.00 0.00 4.40
4428 4966 4.668576 AACAACTGCACATCATCTTACG 57.331 40.909 0.00 0.00 0.00 3.18
4429 4967 3.925379 ACAACTGCACATCATCTTACGA 58.075 40.909 0.00 0.00 0.00 3.43
4430 4968 4.507710 ACAACTGCACATCATCTTACGAT 58.492 39.130 0.00 0.00 0.00 3.73
4431 4969 4.568359 ACAACTGCACATCATCTTACGATC 59.432 41.667 0.00 0.00 0.00 3.69
4432 4970 4.391405 ACTGCACATCATCTTACGATCA 57.609 40.909 0.00 0.00 0.00 2.92
4433 4971 4.953667 ACTGCACATCATCTTACGATCAT 58.046 39.130 0.00 0.00 0.00 2.45
4434 4972 6.089249 ACTGCACATCATCTTACGATCATA 57.911 37.500 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.281371 GTACATTTCTTATACTTATGTTCCCCC 57.719 37.037 0.00 0.00 32.23 5.40
109 111 5.073965 AGGGTTAGGATTAGTGGTTTTGTCA 59.926 40.000 0.00 0.00 0.00 3.58
110 112 5.567430 AGGGTTAGGATTAGTGGTTTTGTC 58.433 41.667 0.00 0.00 0.00 3.18
254 266 4.663334 ACCCTAGTTTTGAAGATGGTTCC 58.337 43.478 0.00 0.00 0.00 3.62
372 384 5.071653 TCGATTAGATTGGTCCATGAATCCA 59.928 40.000 0.00 0.00 30.13 3.41
412 424 0.714180 TGTCCCTCACTTAGCCCCTA 59.286 55.000 0.00 0.00 0.00 3.53
463 475 0.178861 TCTCTTCTCCCCCTTTGGCT 60.179 55.000 0.00 0.00 0.00 4.75
469 481 1.089123 ACTCACTCTCTTCTCCCCCT 58.911 55.000 0.00 0.00 0.00 4.79
522 541 4.570772 TGGCGTTTCTAGTGCAGATATTTC 59.429 41.667 0.00 0.00 31.77 2.17
646 694 1.546476 TGGCGTTTTTGGTCAACACTT 59.454 42.857 0.00 0.00 0.00 3.16
779 828 8.144478 GCAGACCTGATGAATAAACTGTATCTA 58.856 37.037 0.47 0.00 0.00 1.98
780 829 6.989169 GCAGACCTGATGAATAAACTGTATCT 59.011 38.462 0.47 0.00 0.00 1.98
781 830 6.763135 TGCAGACCTGATGAATAAACTGTATC 59.237 38.462 0.47 0.00 0.00 2.24
782 831 6.653020 TGCAGACCTGATGAATAAACTGTAT 58.347 36.000 0.47 0.00 0.00 2.29
783 832 6.048732 TGCAGACCTGATGAATAAACTGTA 57.951 37.500 0.47 0.00 0.00 2.74
784 833 4.910195 TGCAGACCTGATGAATAAACTGT 58.090 39.130 0.47 0.00 0.00 3.55
785 834 4.334759 CCTGCAGACCTGATGAATAAACTG 59.665 45.833 17.39 0.00 0.00 3.16
786 835 4.521146 CCTGCAGACCTGATGAATAAACT 58.479 43.478 17.39 0.00 0.00 2.66
787 836 3.629398 CCCTGCAGACCTGATGAATAAAC 59.371 47.826 17.39 0.00 0.00 2.01
788 837 3.266772 ACCCTGCAGACCTGATGAATAAA 59.733 43.478 17.39 0.00 0.00 1.40
789 838 2.846206 ACCCTGCAGACCTGATGAATAA 59.154 45.455 17.39 0.00 0.00 1.40
790 839 2.481441 ACCCTGCAGACCTGATGAATA 58.519 47.619 17.39 0.00 0.00 1.75
791 840 1.293062 ACCCTGCAGACCTGATGAAT 58.707 50.000 17.39 0.00 0.00 2.57
792 841 1.555075 GTACCCTGCAGACCTGATGAA 59.445 52.381 17.39 0.00 0.00 2.57
793 842 1.195115 GTACCCTGCAGACCTGATGA 58.805 55.000 17.39 0.00 0.00 2.92
794 843 0.904649 TGTACCCTGCAGACCTGATG 59.095 55.000 17.39 0.00 0.00 3.07
795 844 1.765314 GATGTACCCTGCAGACCTGAT 59.235 52.381 17.39 0.91 0.00 2.90
796 845 1.195115 GATGTACCCTGCAGACCTGA 58.805 55.000 17.39 0.00 0.00 3.86
797 846 1.198713 AGATGTACCCTGCAGACCTG 58.801 55.000 17.39 3.02 0.00 4.00
798 847 2.766828 GTTAGATGTACCCTGCAGACCT 59.233 50.000 17.39 0.00 0.00 3.85
799 848 2.500098 TGTTAGATGTACCCTGCAGACC 59.500 50.000 17.39 0.00 0.00 3.85
800 849 3.056107 TGTGTTAGATGTACCCTGCAGAC 60.056 47.826 17.39 6.14 0.00 3.51
801 850 3.056107 GTGTGTTAGATGTACCCTGCAGA 60.056 47.826 17.39 0.00 0.00 4.26
802 851 3.262420 GTGTGTTAGATGTACCCTGCAG 58.738 50.000 6.78 6.78 0.00 4.41
803 852 2.635427 TGTGTGTTAGATGTACCCTGCA 59.365 45.455 0.00 0.00 0.00 4.41
804 853 3.000727 GTGTGTGTTAGATGTACCCTGC 58.999 50.000 0.00 0.00 0.00 4.85
805 854 3.994392 GTGTGTGTGTTAGATGTACCCTG 59.006 47.826 0.00 0.00 0.00 4.45
806 855 3.644265 TGTGTGTGTGTTAGATGTACCCT 59.356 43.478 0.00 0.00 0.00 4.34
807 856 3.744426 GTGTGTGTGTGTTAGATGTACCC 59.256 47.826 0.00 0.00 0.00 3.69
808 857 4.210537 GTGTGTGTGTGTGTTAGATGTACC 59.789 45.833 0.00 0.00 0.00 3.34
809 858 4.806775 TGTGTGTGTGTGTGTTAGATGTAC 59.193 41.667 0.00 0.00 0.00 2.90
810 859 4.806775 GTGTGTGTGTGTGTGTTAGATGTA 59.193 41.667 0.00 0.00 0.00 2.29
811 860 3.621268 GTGTGTGTGTGTGTGTTAGATGT 59.379 43.478 0.00 0.00 0.00 3.06
812 861 3.620821 TGTGTGTGTGTGTGTGTTAGATG 59.379 43.478 0.00 0.00 0.00 2.90
813 862 3.621268 GTGTGTGTGTGTGTGTGTTAGAT 59.379 43.478 0.00 0.00 0.00 1.98
814 863 2.997303 GTGTGTGTGTGTGTGTGTTAGA 59.003 45.455 0.00 0.00 0.00 2.10
815 864 2.739379 TGTGTGTGTGTGTGTGTGTTAG 59.261 45.455 0.00 0.00 0.00 2.34
816 865 2.480802 GTGTGTGTGTGTGTGTGTGTTA 59.519 45.455 0.00 0.00 0.00 2.41
817 866 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
818 867 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
819 868 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
820 869 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
821 870 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
822 871 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
823 872 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
824 873 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
825 874 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
826 875 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
827 876 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
828 877 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
829 878 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
830 879 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
831 880 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
832 881 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
833 882 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
834 883 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
835 884 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
836 885 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
837 886 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
838 887 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
839 888 4.377328 GCTATATGTGTGTGTGTGTGTGTG 60.377 45.833 0.00 0.00 0.00 3.82
840 889 3.745975 GCTATATGTGTGTGTGTGTGTGT 59.254 43.478 0.00 0.00 0.00 3.72
841 890 3.745458 TGCTATATGTGTGTGTGTGTGTG 59.255 43.478 0.00 0.00 0.00 3.82
842 891 3.996363 CTGCTATATGTGTGTGTGTGTGT 59.004 43.478 0.00 0.00 0.00 3.72
843 892 3.996363 ACTGCTATATGTGTGTGTGTGTG 59.004 43.478 0.00 0.00 0.00 3.82
844 893 4.271696 ACTGCTATATGTGTGTGTGTGT 57.728 40.909 0.00 0.00 0.00 3.72
845 894 4.690280 TCAACTGCTATATGTGTGTGTGTG 59.310 41.667 0.00 0.00 0.00 3.82
846 895 4.690748 GTCAACTGCTATATGTGTGTGTGT 59.309 41.667 0.00 0.00 0.00 3.72
847 896 4.690280 TGTCAACTGCTATATGTGTGTGTG 59.310 41.667 0.00 0.00 0.00 3.82
848 897 4.893608 TGTCAACTGCTATATGTGTGTGT 58.106 39.130 0.00 0.00 0.00 3.72
849 898 5.639082 TCTTGTCAACTGCTATATGTGTGTG 59.361 40.000 0.00 0.00 0.00 3.82
850 899 5.793817 TCTTGTCAACTGCTATATGTGTGT 58.206 37.500 0.00 0.00 0.00 3.72
851 900 6.915544 ATCTTGTCAACTGCTATATGTGTG 57.084 37.500 0.00 0.00 0.00 3.82
852 901 9.618890 AATTATCTTGTCAACTGCTATATGTGT 57.381 29.630 0.00 0.00 0.00 3.72
860 909 8.246180 CCAACATTAATTATCTTGTCAACTGCT 58.754 33.333 0.00 0.00 0.00 4.24
861 910 8.243426 TCCAACATTAATTATCTTGTCAACTGC 58.757 33.333 0.00 0.00 0.00 4.40
864 913 9.353999 GGTTCCAACATTAATTATCTTGTCAAC 57.646 33.333 0.00 0.00 0.00 3.18
865 914 9.083422 TGGTTCCAACATTAATTATCTTGTCAA 57.917 29.630 0.00 0.00 0.00 3.18
866 915 8.642935 TGGTTCCAACATTAATTATCTTGTCA 57.357 30.769 0.00 0.00 0.00 3.58
867 916 8.956426 TCTGGTTCCAACATTAATTATCTTGTC 58.044 33.333 0.00 0.00 0.00 3.18
868 917 8.877864 TCTGGTTCCAACATTAATTATCTTGT 57.122 30.769 0.00 0.00 0.00 3.16
875 924 7.706179 CGCATAATTCTGGTTCCAACATTAATT 59.294 33.333 6.51 0.00 0.00 1.40
876 925 7.068103 TCGCATAATTCTGGTTCCAACATTAAT 59.932 33.333 6.51 0.00 0.00 1.40
877 926 6.375736 TCGCATAATTCTGGTTCCAACATTAA 59.624 34.615 6.51 0.00 0.00 1.40
878 927 5.883115 TCGCATAATTCTGGTTCCAACATTA 59.117 36.000 0.00 0.02 0.00 1.90
879 928 4.704540 TCGCATAATTCTGGTTCCAACATT 59.295 37.500 0.00 0.00 0.00 2.71
880 929 4.269183 TCGCATAATTCTGGTTCCAACAT 58.731 39.130 0.00 0.00 0.00 2.71
881 930 3.680490 TCGCATAATTCTGGTTCCAACA 58.320 40.909 0.00 0.00 0.00 3.33
882 931 4.695217 TTCGCATAATTCTGGTTCCAAC 57.305 40.909 0.00 0.00 0.00 3.77
883 932 4.157656 CCTTTCGCATAATTCTGGTTCCAA 59.842 41.667 0.00 0.00 0.00 3.53
884 933 3.694072 CCTTTCGCATAATTCTGGTTCCA 59.306 43.478 0.00 0.00 0.00 3.53
885 934 3.694566 ACCTTTCGCATAATTCTGGTTCC 59.305 43.478 0.00 0.00 0.00 3.62
886 935 4.394920 TCACCTTTCGCATAATTCTGGTTC 59.605 41.667 0.00 0.00 0.00 3.62
887 936 4.331968 TCACCTTTCGCATAATTCTGGTT 58.668 39.130 0.00 0.00 0.00 3.67
888 937 3.950397 TCACCTTTCGCATAATTCTGGT 58.050 40.909 0.00 0.00 0.00 4.00
889 938 4.635765 TCTTCACCTTTCGCATAATTCTGG 59.364 41.667 0.00 0.00 0.00 3.86
890 939 5.582269 TCTCTTCACCTTTCGCATAATTCTG 59.418 40.000 0.00 0.00 0.00 3.02
891 940 5.734720 TCTCTTCACCTTTCGCATAATTCT 58.265 37.500 0.00 0.00 0.00 2.40
892 941 6.422776 TTCTCTTCACCTTTCGCATAATTC 57.577 37.500 0.00 0.00 0.00 2.17
893 942 8.506168 TTATTCTCTTCACCTTTCGCATAATT 57.494 30.769 0.00 0.00 0.00 1.40
894 943 7.227512 CCTTATTCTCTTCACCTTTCGCATAAT 59.772 37.037 0.00 0.00 0.00 1.28
895 944 6.538742 CCTTATTCTCTTCACCTTTCGCATAA 59.461 38.462 0.00 0.00 0.00 1.90
896 945 6.049149 CCTTATTCTCTTCACCTTTCGCATA 58.951 40.000 0.00 0.00 0.00 3.14
897 946 4.878397 CCTTATTCTCTTCACCTTTCGCAT 59.122 41.667 0.00 0.00 0.00 4.73
898 947 4.253685 CCTTATTCTCTTCACCTTTCGCA 58.746 43.478 0.00 0.00 0.00 5.10
899 948 3.064134 GCCTTATTCTCTTCACCTTTCGC 59.936 47.826 0.00 0.00 0.00 4.70
900 949 4.508662 AGCCTTATTCTCTTCACCTTTCG 58.491 43.478 0.00 0.00 0.00 3.46
901 950 6.825944 AAAGCCTTATTCTCTTCACCTTTC 57.174 37.500 0.00 0.00 0.00 2.62
902 951 7.603180 AAAAAGCCTTATTCTCTTCACCTTT 57.397 32.000 0.00 0.00 0.00 3.11
924 973 6.790319 AGCCTTATTCTCTTCACCCTAAAAA 58.210 36.000 0.00 0.00 0.00 1.94
925 974 6.388619 AGCCTTATTCTCTTCACCCTAAAA 57.611 37.500 0.00 0.00 0.00 1.52
926 975 6.388619 AAGCCTTATTCTCTTCACCCTAAA 57.611 37.500 0.00 0.00 0.00 1.85
927 976 6.388619 AAAGCCTTATTCTCTTCACCCTAA 57.611 37.500 0.00 0.00 0.00 2.69
928 977 6.180472 CAAAAGCCTTATTCTCTTCACCCTA 58.820 40.000 0.00 0.00 0.00 3.53
929 978 4.936685 AAAGCCTTATTCTCTTCACCCT 57.063 40.909 0.00 0.00 0.00 4.34
930 979 4.158579 CCAAAAGCCTTATTCTCTTCACCC 59.841 45.833 0.00 0.00 0.00 4.61
931 980 5.010282 TCCAAAAGCCTTATTCTCTTCACC 58.990 41.667 0.00 0.00 0.00 4.02
949 998 4.777896 ACTTATAGCACTGTCCTCTCCAAA 59.222 41.667 0.00 0.00 0.00 3.28
950 999 4.353777 ACTTATAGCACTGTCCTCTCCAA 58.646 43.478 0.00 0.00 0.00 3.53
951 1000 3.982516 ACTTATAGCACTGTCCTCTCCA 58.017 45.455 0.00 0.00 0.00 3.86
957 1006 3.004524 CCGAGGTACTTATAGCACTGTCC 59.995 52.174 0.00 0.00 41.55 4.02
960 1009 2.361119 TGCCGAGGTACTTATAGCACTG 59.639 50.000 0.00 0.00 41.55 3.66
981 1030 2.845659 TCTATGGTGTGTGGGAAGGAT 58.154 47.619 0.00 0.00 0.00 3.24
982 1031 2.335681 TCTATGGTGTGTGGGAAGGA 57.664 50.000 0.00 0.00 0.00 3.36
986 1035 4.080582 CACCTATTTCTATGGTGTGTGGGA 60.081 45.833 0.00 0.00 44.35 4.37
1012 1061 5.188948 TGATCTATCGGGTTTTCCTTCTCAA 59.811 40.000 0.00 0.00 40.46 3.02
1014 1063 5.051153 GTGATCTATCGGGTTTTCCTTCTC 58.949 45.833 0.00 0.00 40.46 2.87
1021 1070 4.715297 AGGTAGTGTGATCTATCGGGTTTT 59.285 41.667 0.00 0.00 0.00 2.43
1030 1079 4.402793 GGAGAAAGCAGGTAGTGTGATCTA 59.597 45.833 0.00 0.00 0.00 1.98
1033 1082 2.906389 TGGAGAAAGCAGGTAGTGTGAT 59.094 45.455 0.00 0.00 0.00 3.06
1035 1084 2.613977 CCTGGAGAAAGCAGGTAGTGTG 60.614 54.545 0.00 0.00 0.00 3.82
1049 1098 1.079256 CAGTCCTGGTCCCTGGAGA 59.921 63.158 11.83 0.00 43.18 3.71
1058 1107 2.635427 GGAAGAAGAAGACAGTCCTGGT 59.365 50.000 0.00 0.00 34.19 4.00
1059 1108 2.027653 GGGAAGAAGAAGACAGTCCTGG 60.028 54.545 0.00 0.00 34.19 4.45
1061 1110 2.635427 GTGGGAAGAAGAAGACAGTCCT 59.365 50.000 0.00 0.00 0.00 3.85
1062 1111 2.368875 TGTGGGAAGAAGAAGACAGTCC 59.631 50.000 0.00 0.00 0.00 3.85
1063 1112 3.394719 GTGTGGGAAGAAGAAGACAGTC 58.605 50.000 0.00 0.00 0.00 3.51
1064 1113 2.224066 CGTGTGGGAAGAAGAAGACAGT 60.224 50.000 0.00 0.00 0.00 3.55
1084 1133 3.636929 TTGGCCCACATGGTAGCCG 62.637 63.158 14.92 0.00 43.03 5.52
1097 1146 2.124151 ATGGCGATGACCTTGGCC 60.124 61.111 0.00 0.00 45.76 5.36
1100 1149 2.636830 AGAAAGATGGCGATGACCTTG 58.363 47.619 0.00 0.00 0.00 3.61
1116 1165 3.243068 GCGAGTTGGAGCAAAAGAAGAAA 60.243 43.478 0.00 0.00 0.00 2.52
1124 1173 2.280797 AGCGCGAGTTGGAGCAAA 60.281 55.556 12.10 0.00 34.98 3.68
1132 1181 1.664965 GAGGACAACAGCGCGAGTT 60.665 57.895 12.10 11.38 0.00 3.01
1133 1182 2.049063 GAGGACAACAGCGCGAGT 60.049 61.111 12.10 4.06 0.00 4.18
1139 1188 2.087646 GAATTGGAGGAGGACAACAGC 58.912 52.381 0.00 0.00 0.00 4.40
1141 1190 2.061848 TGGAATTGGAGGAGGACAACA 58.938 47.619 0.00 0.00 0.00 3.33
1156 1205 1.407437 GGAGCTCGAACACCATGGAAT 60.407 52.381 21.47 2.09 0.00 3.01
1178 1227 2.404215 CCAATAGGATAGACGTTGCCG 58.596 52.381 0.00 0.00 36.89 5.69
1209 1258 9.959721 AGTAGCTTCCATCATAAGAAAAAGTTA 57.040 29.630 0.00 0.00 0.00 2.24
1214 1263 8.103305 ACAAGAGTAGCTTCCATCATAAGAAAA 58.897 33.333 0.00 0.00 33.60 2.29
1218 1267 9.632807 GTATACAAGAGTAGCTTCCATCATAAG 57.367 37.037 0.00 0.00 33.60 1.73
1248 1297 7.416213 CCAACAGTTTCTTCCATTACACAGAAA 60.416 37.037 0.00 0.00 33.76 2.52
1250 1299 5.530915 CCAACAGTTTCTTCCATTACACAGA 59.469 40.000 0.00 0.00 0.00 3.41
1251 1300 5.299279 ACCAACAGTTTCTTCCATTACACAG 59.701 40.000 0.00 0.00 0.00 3.66
1252 1301 5.197451 ACCAACAGTTTCTTCCATTACACA 58.803 37.500 0.00 0.00 0.00 3.72
1253 1302 5.531287 AGACCAACAGTTTCTTCCATTACAC 59.469 40.000 0.00 0.00 0.00 2.90
1254 1303 5.690865 AGACCAACAGTTTCTTCCATTACA 58.309 37.500 0.00 0.00 0.00 2.41
1255 1304 5.998363 AGAGACCAACAGTTTCTTCCATTAC 59.002 40.000 0.00 0.00 36.56 1.89
1296 1345 6.165577 ACAAGGATAAAATCGCAGCATTTTT 58.834 32.000 16.00 11.94 37.23 1.94
1321 1370 9.619316 CTGAACGAAAAATCATGTAAATTACCA 57.381 29.630 0.18 0.00 0.00 3.25
1323 1372 9.620660 ACCTGAACGAAAAATCATGTAAATTAC 57.379 29.630 0.00 0.00 0.00 1.89
1327 1376 6.442952 CCACCTGAACGAAAAATCATGTAAA 58.557 36.000 0.00 0.00 0.00 2.01
1330 1379 3.255642 CCCACCTGAACGAAAAATCATGT 59.744 43.478 0.00 0.00 0.00 3.21
1342 1391 2.360475 GCAGCTCCCCACCTGAAC 60.360 66.667 0.00 0.00 0.00 3.18
1350 1399 0.813821 GAAATTCAGTGCAGCTCCCC 59.186 55.000 0.00 0.00 0.00 4.81
1392 1441 9.982291 GATAACTTGCATACGAATTCAGTTAAA 57.018 29.630 13.23 0.00 0.00 1.52
1393 1442 9.378551 AGATAACTTGCATACGAATTCAGTTAA 57.621 29.630 13.23 0.00 0.00 2.01
1415 1464 5.765677 CAGGATCGAGTTAGAGGACAAGATA 59.234 44.000 0.00 0.00 0.00 1.98
1416 1465 4.582656 CAGGATCGAGTTAGAGGACAAGAT 59.417 45.833 0.00 0.00 0.00 2.40
1426 1475 3.380004 AGAGAACAGCAGGATCGAGTTAG 59.620 47.826 0.00 0.00 0.00 2.34
1477 1526 4.243270 GTTTGCATGTACTACCGAACTCT 58.757 43.478 0.00 0.00 0.00 3.24
1503 1593 0.670239 TTGATGCACACAGATCGCGT 60.670 50.000 5.77 0.00 0.00 6.01
1504 1594 0.247419 GTTGATGCACACAGATCGCG 60.247 55.000 0.00 0.00 0.00 5.87
1507 1597 5.808042 ATACAAGTTGATGCACACAGATC 57.192 39.130 10.54 0.00 0.00 2.75
1537 1627 1.786579 GAAAAGGCGTGTGTCAAATGC 59.213 47.619 0.00 0.00 0.00 3.56
1548 1638 1.890876 TACACATGCAGAAAAGGCGT 58.109 45.000 0.00 0.00 0.00 5.68
1549 1639 2.226437 AGTTACACATGCAGAAAAGGCG 59.774 45.455 0.00 0.00 0.00 5.52
1561 1651 4.891992 AGAACTGGCTGTAGTTACACAT 57.108 40.909 0.00 0.00 40.78 3.21
1610 1700 2.025887 ACATGGAGGAAGTAGGGCTTTG 60.026 50.000 0.00 0.00 37.59 2.77
1620 1710 1.442769 CGGTGTCAACATGGAGGAAG 58.557 55.000 0.00 0.00 0.00 3.46
1697 1787 3.546714 AAGTAGCCGTGGGTGCACC 62.547 63.158 28.57 28.57 40.81 5.01
1698 1788 2.032071 AAGTAGCCGTGGGTGCAC 59.968 61.111 8.80 8.80 0.00 4.57
1699 1789 1.836999 ATGAAGTAGCCGTGGGTGCA 61.837 55.000 8.85 0.00 0.00 4.57
1700 1790 0.676782 AATGAAGTAGCCGTGGGTGC 60.677 55.000 0.00 0.00 0.00 5.01
1701 1791 1.821216 AAATGAAGTAGCCGTGGGTG 58.179 50.000 0.00 0.00 0.00 4.61
1733 1823 6.105333 CAGATGATAAGCCCTCATAGCTAAC 58.895 44.000 0.00 0.00 40.49 2.34
1827 1917 4.150980 CCACGCGTTTGATACAAGAGTAAA 59.849 41.667 10.22 0.00 33.13 2.01
1833 1923 3.290098 GCCACGCGTTTGATACAAG 57.710 52.632 10.22 0.00 0.00 3.16
1853 1943 6.414408 AGTCGATTTCATGAGTCATTTCAC 57.586 37.500 1.86 1.33 0.00 3.18
1858 1948 4.639135 TCGAGTCGATTTCATGAGTCAT 57.361 40.909 12.09 0.00 34.85 3.06
1862 1952 3.488678 CACCATCGAGTCGATTTCATGAG 59.511 47.826 25.03 11.93 44.59 2.90
1968 2058 0.994247 TCCAGGTCCTTGTGCATCAT 59.006 50.000 0.00 0.00 0.00 2.45
2006 2096 0.737019 CGCATTGGTTTGGATGCACC 60.737 55.000 8.76 0.00 46.87 5.01
2008 2098 0.243365 GTCGCATTGGTTTGGATGCA 59.757 50.000 8.76 0.00 46.87 3.96
2016 2106 5.449107 ACTATATCGTAGTCGCATTGGTT 57.551 39.130 0.00 0.00 36.96 3.67
2033 2123 7.056635 AGTAGCCGTCCTTGTAACTTACTATA 58.943 38.462 0.71 0.00 0.00 1.31
2037 2127 4.082571 TGAGTAGCCGTCCTTGTAACTTAC 60.083 45.833 0.00 0.00 0.00 2.34
2038 2128 4.081406 TGAGTAGCCGTCCTTGTAACTTA 58.919 43.478 0.00 0.00 0.00 2.24
2039 2129 2.895404 TGAGTAGCCGTCCTTGTAACTT 59.105 45.455 0.00 0.00 0.00 2.66
2040 2130 2.522185 TGAGTAGCCGTCCTTGTAACT 58.478 47.619 0.00 0.00 0.00 2.24
2041 2131 3.445857 GATGAGTAGCCGTCCTTGTAAC 58.554 50.000 0.00 0.00 0.00 2.50
2079 2169 1.079057 GGAGGGAGAACTTGTCGGC 60.079 63.158 0.00 0.00 0.00 5.54
2305 2395 0.106519 ACCCTTGTTGCTTGAGCTGT 60.107 50.000 4.44 0.00 42.66 4.40
2468 2714 5.011090 AGACATCTGCACGTTGTACATAT 57.989 39.130 0.00 0.00 0.00 1.78
2489 2752 5.689068 GTGCAACCAAATGAGAAGAAAAGAG 59.311 40.000 0.00 0.00 0.00 2.85
2495 2758 3.286353 TGTGTGCAACCAAATGAGAAGA 58.714 40.909 0.00 0.00 34.36 2.87
2554 2817 8.713271 GTGAGTAGTAAATCCTGAAAGAAACAG 58.287 37.037 0.00 0.00 34.07 3.16
2555 2818 7.660208 GGTGAGTAGTAAATCCTGAAAGAAACA 59.340 37.037 0.00 0.00 34.07 2.83
2556 2819 7.878644 AGGTGAGTAGTAAATCCTGAAAGAAAC 59.121 37.037 0.00 0.00 34.07 2.78
2557 2820 7.878127 CAGGTGAGTAGTAAATCCTGAAAGAAA 59.122 37.037 0.00 0.00 43.28 2.52
2558 2821 7.386851 CAGGTGAGTAGTAAATCCTGAAAGAA 58.613 38.462 0.00 0.00 43.28 2.52
2686 2949 0.608130 AAGCTGCTCGTATGTGTCCA 59.392 50.000 1.00 0.00 0.00 4.02
2701 2964 1.497161 ACCTACCGCCTGAATAAGCT 58.503 50.000 0.00 0.00 0.00 3.74
2767 3030 6.895756 ACATGTCTAGTTAGGTAGTGATTGGA 59.104 38.462 0.00 0.00 0.00 3.53
2768 3031 7.113658 ACATGTCTAGTTAGGTAGTGATTGG 57.886 40.000 0.00 0.00 0.00 3.16
2771 3034 6.321690 GGTGACATGTCTAGTTAGGTAGTGAT 59.678 42.308 25.55 0.00 0.00 3.06
2797 3060 1.273327 CCACCTGCAAGACCCAAAATC 59.727 52.381 0.00 0.00 34.07 2.17
2834 3097 4.065321 AGACACCTTCTGAAGTGTTGAG 57.935 45.455 19.34 7.12 31.12 3.02
2853 3116 4.332828 TGAGTCAGTTCAGGATCGTTAGA 58.667 43.478 0.00 0.00 0.00 2.10
2856 3119 4.248859 CATTGAGTCAGTTCAGGATCGTT 58.751 43.478 0.00 0.00 0.00 3.85
2892 3155 3.678072 TCGTCGACAGATTTGATTGGTTC 59.322 43.478 17.16 0.00 0.00 3.62
2901 3164 2.668457 GCTTGACATCGTCGACAGATTT 59.332 45.455 17.16 11.83 34.95 2.17
2939 3202 4.196193 CGCCATAGGTAAAGGTCAATTGA 58.804 43.478 3.38 3.38 0.00 2.57
2940 3203 3.243068 GCGCCATAGGTAAAGGTCAATTG 60.243 47.826 0.00 0.00 0.00 2.32
3000 3263 3.487879 CCAAGGTTTACCGTGACAACAAC 60.488 47.826 15.14 0.00 46.41 3.32
3042 3305 8.314021 TCTTCTGCTATTCATTTCTTGTAGTCA 58.686 33.333 0.00 0.00 0.00 3.41
3139 3402 3.048337 TCCCGTGTTCTGAACCATTAC 57.952 47.619 17.26 8.14 0.00 1.89
3140 3403 3.605634 CATCCCGTGTTCTGAACCATTA 58.394 45.455 17.26 0.00 0.00 1.90
3204 3467 6.151144 GCTATCCTAGTTTTGGAAAGCAGAAA 59.849 38.462 0.00 0.00 37.13 2.52
3209 3472 3.939592 ACGCTATCCTAGTTTTGGAAAGC 59.060 43.478 0.00 0.00 37.13 3.51
3216 3479 5.978814 ACTGATGAACGCTATCCTAGTTTT 58.021 37.500 0.00 0.00 0.00 2.43
3230 3493 6.645003 GGGAAAACCATTACAAACTGATGAAC 59.355 38.462 0.00 0.00 39.85 3.18
3303 3566 2.407696 CGCGCTCTCTCATTGTCATATG 59.592 50.000 5.56 0.00 0.00 1.78
3346 3609 0.618458 ACCCCGGCATTATATCGCAT 59.382 50.000 0.00 0.00 0.00 4.73
3450 3713 6.769822 CAGAAAATGTCAGTATCCTTAGCCAT 59.230 38.462 0.00 0.00 0.00 4.40
3520 3783 5.163416 CCACTCATCCTTCAAACCAAAAAGT 60.163 40.000 0.00 0.00 0.00 2.66
3521 3784 5.291971 CCACTCATCCTTCAAACCAAAAAG 58.708 41.667 0.00 0.00 0.00 2.27
3522 3785 4.442753 GCCACTCATCCTTCAAACCAAAAA 60.443 41.667 0.00 0.00 0.00 1.94
3523 3786 3.069443 GCCACTCATCCTTCAAACCAAAA 59.931 43.478 0.00 0.00 0.00 2.44
3526 3789 1.144708 TGCCACTCATCCTTCAAACCA 59.855 47.619 0.00 0.00 0.00 3.67
3588 3852 7.363205 CAAAATTTGCAAGTTATGGGGTAAG 57.637 36.000 7.69 0.00 0.00 2.34
3627 3891 2.291089 ACCATCACAAGATCATGCCACA 60.291 45.455 0.00 0.00 30.20 4.17
3629 3893 2.812836 ACCATCACAAGATCATGCCA 57.187 45.000 0.00 0.00 30.20 4.92
3647 3911 6.774354 TCTTTGTTTGTAGACGATTGGTAC 57.226 37.500 0.00 0.00 0.00 3.34
3668 3932 8.778059 TGTTGGAAGGGTCTATATGTTAAATCT 58.222 33.333 0.00 0.00 0.00 2.40
3698 3962 6.144078 TGCGTGTGTAGTCTATATGTTCAT 57.856 37.500 0.00 0.00 0.00 2.57
3718 3982 5.008911 TCTGAATTTGAATACATGGGATGCG 59.991 40.000 0.00 0.00 0.00 4.73
3721 3985 9.645128 TGTAATCTGAATTTGAATACATGGGAT 57.355 29.630 0.00 0.00 28.45 3.85
3777 4042 1.153549 CCTAAGTCAGAGTGCGGCC 60.154 63.158 0.00 0.00 0.00 6.13
3803 4068 1.002142 CCCTTGCATCATATGTGTGCG 60.002 52.381 21.86 13.38 41.61 5.34
3864 4129 5.597813 TCTTGAGCGAAGACTGATTTTTC 57.402 39.130 0.00 0.00 35.64 2.29
3886 4151 5.608437 TGAGGGAATATAGCAGGACTCATTT 59.392 40.000 0.00 0.00 0.00 2.32
3904 4169 2.306847 GCAGGTTTCAGTTTTGAGGGA 58.693 47.619 0.00 0.00 34.15 4.20
3959 4479 8.592105 TTTTCACAATGCTATTCCTTTTGAAG 57.408 30.769 0.00 0.00 36.14 3.02
3987 4507 5.410067 CGTACCAGCCAAATGAAATTTCAT 58.590 37.500 24.83 24.83 44.81 2.57
4000 4520 0.970640 TCTAGTTTGCGTACCAGCCA 59.029 50.000 0.00 0.00 36.02 4.75
4009 4529 6.787515 CGCTATATTCATTTGTCTAGTTTGCG 59.212 38.462 0.00 0.00 0.00 4.85
4010 4530 7.584123 CACGCTATATTCATTTGTCTAGTTTGC 59.416 37.037 0.00 0.00 0.00 3.68
4011 4531 8.604035 ACACGCTATATTCATTTGTCTAGTTTG 58.396 33.333 0.00 0.00 0.00 2.93
4016 4536 9.811995 ACTTAACACGCTATATTCATTTGTCTA 57.188 29.630 0.00 0.00 0.00 2.59
4029 4550 4.430137 TTCACTCGACTTAACACGCTAT 57.570 40.909 0.00 0.00 0.00 2.97
4042 4563 4.921515 CGGTTGAAGTTCTATTTCACTCGA 59.078 41.667 4.17 0.00 34.50 4.04
4044 4565 5.120363 GTCCGGTTGAAGTTCTATTTCACTC 59.880 44.000 0.00 0.00 34.50 3.51
4053 4574 1.760613 TGTCAGTCCGGTTGAAGTTCT 59.239 47.619 11.95 0.00 0.00 3.01
4070 4591 5.990408 ACGAGATCAAGTTGATTGTTTGTC 58.010 37.500 19.19 6.09 37.20 3.18
4088 4609 3.394674 TTCCAACTGTGCAATACGAGA 57.605 42.857 0.00 0.00 0.00 4.04
4091 4612 4.159377 ACATTTCCAACTGTGCAATACG 57.841 40.909 0.00 0.00 0.00 3.06
4124 4651 8.372459 GGGGGCCTTTTATTTCGATAATTAAAT 58.628 33.333 0.84 0.00 0.00 1.40
4129 4656 4.810345 TGGGGGCCTTTTATTTCGATAAT 58.190 39.130 0.84 0.00 0.00 1.28
4134 4661 1.847328 ACTGGGGGCCTTTTATTTCG 58.153 50.000 0.84 0.00 0.00 3.46
4135 4662 4.382685 GCTTTACTGGGGGCCTTTTATTTC 60.383 45.833 0.84 0.00 0.00 2.17
4139 4666 1.429687 TGCTTTACTGGGGGCCTTTTA 59.570 47.619 0.84 0.00 0.00 1.52
4144 4671 0.824109 GATTTGCTTTACTGGGGGCC 59.176 55.000 0.00 0.00 0.00 5.80
4146 4673 2.102578 CAGGATTTGCTTTACTGGGGG 58.897 52.381 0.00 0.00 0.00 5.40
4161 4688 2.776536 AGTTCAGCATAAGAGGCAGGAT 59.223 45.455 0.00 0.00 0.00 3.24
4191 4718 7.340232 AGGATCTCTAGAAGCTGCATATTAGAG 59.660 40.741 17.12 17.12 36.87 2.43
4201 4738 3.565307 ACTGGAGGATCTCTAGAAGCTG 58.435 50.000 13.84 0.00 40.77 4.24
4226 4763 6.813649 ACTACTGCATGTTATGTTGTGTAGAG 59.186 38.462 7.95 0.00 31.81 2.43
4238 4775 4.202080 GGTGGTCGATACTACTGCATGTTA 60.202 45.833 0.00 0.00 37.27 2.41
4250 4787 4.340381 AGTTACTGGTATGGTGGTCGATAC 59.660 45.833 0.00 0.00 35.49 2.24
4254 4791 3.698040 ACTAGTTACTGGTATGGTGGTCG 59.302 47.826 0.00 0.00 0.00 4.79
4288 4825 9.765795 GAGTCATAGCATTACTTTGTACCTATT 57.234 33.333 0.00 0.00 0.00 1.73
4289 4826 8.924303 TGAGTCATAGCATTACTTTGTACCTAT 58.076 33.333 0.00 0.00 0.00 2.57
4290 4827 8.301252 TGAGTCATAGCATTACTTTGTACCTA 57.699 34.615 0.00 0.00 0.00 3.08
4291 4828 7.182817 TGAGTCATAGCATTACTTTGTACCT 57.817 36.000 0.00 0.00 0.00 3.08
4300 4837 7.834068 TTCTCTGTTTGAGTCATAGCATTAC 57.166 36.000 0.00 0.00 43.13 1.89
4360 4898 9.912634 ATTATTTATTTATTCTTGTGGGATGCG 57.087 29.630 0.00 0.00 0.00 4.73
4390 4928 7.114670 TGCAGTTGTTTGATTTGAATTATGACG 59.885 33.333 0.00 0.00 0.00 4.35
4399 4937 5.259832 TGATGTGCAGTTGTTTGATTTGA 57.740 34.783 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.