Multiple sequence alignment - TraesCS4B01G101600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G101600 chr4B 100.000 7348 0 0 1 7348 107450237 107457584 0.000000e+00 13570.0
1 TraesCS4B01G101600 chr4B 88.994 318 34 1 2779 3095 282886669 282886352 6.910000e-105 392.0
2 TraesCS4B01G101600 chr4B 97.710 131 3 0 506 636 82019122 82019252 7.420000e-55 226.0
3 TraesCS4B01G101600 chr4B 95.714 140 6 0 494 633 622115008 622114869 7.420000e-55 226.0
4 TraesCS4B01G101600 chr4B 95.683 139 6 0 502 640 653214288 653214426 2.670000e-54 224.0
5 TraesCS4B01G101600 chr4A 94.831 6713 235 54 675 7348 512545591 512538952 0.000000e+00 10371.0
6 TraesCS4B01G101600 chr4A 81.522 92 10 1 2088 2179 528736136 528736052 1.320000e-07 69.4
7 TraesCS4B01G101600 chr4D 95.247 4629 158 31 675 5271 75044184 75048782 0.000000e+00 7273.0
8 TraesCS4B01G101600 chr4D 95.585 2084 56 17 5286 7348 75049799 75051867 0.000000e+00 3306.0
9 TraesCS4B01G101600 chr4D 81.800 500 65 15 7 494 75043710 75044195 5.340000e-106 396.0
10 TraesCS4B01G101600 chr4D 88.438 320 36 1 2777 3095 211388338 211388019 1.160000e-102 385.0
11 TraesCS4B01G101600 chr1A 87.926 323 34 4 2781 3102 412467082 412466764 6.960000e-100 375.0
12 TraesCS4B01G101600 chr1B 87.227 321 31 8 2778 3095 589068396 589068083 2.520000e-94 357.0
13 TraesCS4B01G101600 chr3A 86.916 321 33 6 2779 3098 164407965 164407653 1.170000e-92 351.0
14 TraesCS4B01G101600 chr1D 86.687 323 35 7 2781 3102 326292316 326292001 1.170000e-92 351.0
15 TraesCS4B01G101600 chr5B 85.266 319 44 3 2779 3095 490758743 490758426 7.110000e-85 326.0
16 TraesCS4B01G101600 chr5B 96.947 131 4 0 505 635 224325535 224325665 3.450000e-53 220.0
17 TraesCS4B01G101600 chr6B 97.015 134 4 0 501 634 674714768 674714635 7.420000e-55 226.0
18 TraesCS4B01G101600 chr6B 93.151 146 7 3 502 646 601881430 601881287 2.080000e-50 211.0
19 TraesCS4B01G101600 chr2B 96.947 131 4 0 506 636 517437009 517436879 3.450000e-53 220.0
20 TraesCS4B01G101600 chr2D 96.241 133 5 0 503 635 445188723 445188591 1.240000e-52 219.0
21 TraesCS4B01G101600 chr7B 94.366 142 7 1 496 636 311539759 311539618 4.460000e-52 217.0
22 TraesCS4B01G101600 chr3B 80.899 89 15 2 220 307 730742579 730742666 1.320000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G101600 chr4B 107450237 107457584 7347 False 13570.000000 13570 100.000000 1 7348 1 chr4B.!!$F2 7347
1 TraesCS4B01G101600 chr4A 512538952 512545591 6639 True 10371.000000 10371 94.831000 675 7348 1 chr4A.!!$R1 6673
2 TraesCS4B01G101600 chr4D 75043710 75051867 8157 False 3658.333333 7273 90.877333 7 7348 3 chr4D.!!$F1 7341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 531 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.0 0.00 0.00 0.00 4.30 F
628 638 0.038744 AGTACTTTCGGACGGAGGGA 59.961 55.0 0.00 0.00 0.00 4.20 F
630 640 0.038744 TACTTTCGGACGGAGGGAGT 59.961 55.0 0.00 0.00 0.00 3.85 F
774 785 0.175760 TGCCTAACATGTCGGCTCTC 59.824 55.0 28.71 10.13 44.09 3.20 F
775 786 0.175760 GCCTAACATGTCGGCTCTCA 59.824 55.0 24.35 0.00 40.62 3.27 F
2070 2101 0.442310 CGGTGATGCTGTTAACACGG 59.558 55.0 3.59 0.00 34.59 4.94 F
3537 3574 0.101759 ACATGAGCAAATGCCGCATC 59.898 50.0 6.27 0.00 43.38 3.91 F
5074 5133 0.747255 AGTGTCAGTGTCGCTGTCTT 59.253 50.0 13.00 0.00 45.23 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2081 0.179225 CGTGTTAACAGCATCACCGC 60.179 55.000 8.98 0.0 0.00 5.68 R
2550 2581 2.426522 TCAGTTGGCAGTCTAACATGC 58.573 47.619 0.00 0.0 41.80 4.06 R
2776 2812 9.754382 GACGACTCTCTTAGGTATATAGGATAG 57.246 40.741 0.00 0.0 0.00 2.08 R
2904 2940 0.749649 TGGTTGAATGTTGTGGTGGC 59.250 50.000 0.00 0.0 0.00 5.01 R
3071 3108 1.078426 GGATACCCTGCGTGTTGCT 60.078 57.895 0.00 0.0 46.63 3.91 R
4324 4376 1.108776 ATGCATGGCAATCAGGACAC 58.891 50.000 0.00 0.0 43.62 3.67 R
5786 6851 0.537188 CTTCCTCCCATACGCAGTGT 59.463 55.000 0.00 0.0 45.73 3.55 R
6589 7662 0.100503 AACTTCACGGCAAGCAACAC 59.899 50.000 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.133915 TGGTCCTTCGGCTCAAGTTTT 60.134 47.619 0.00 0.00 0.00 2.43
41 42 1.069906 CCTTCGGCTCAAGTTTTGACG 60.070 52.381 0.00 0.00 35.46 4.35
61 62 1.168714 GGCGAAGATTGGCTTGTCTT 58.831 50.000 0.00 0.45 36.83 3.01
62 63 1.135575 GGCGAAGATTGGCTTGTCTTG 60.136 52.381 4.74 0.79 36.83 3.02
70 71 2.035442 GGCTTGTCTTGGCCTCGTC 61.035 63.158 3.32 0.00 44.48 4.20
95 96 1.014352 GCGTGTGAGGTTTGTGTTCT 58.986 50.000 0.00 0.00 0.00 3.01
96 97 1.003866 GCGTGTGAGGTTTGTGTTCTC 60.004 52.381 0.00 0.00 0.00 2.87
97 98 1.597663 CGTGTGAGGTTTGTGTTCTCC 59.402 52.381 0.00 0.00 0.00 3.71
98 99 2.639065 GTGTGAGGTTTGTGTTCTCCA 58.361 47.619 0.00 0.00 0.00 3.86
99 100 3.013921 GTGTGAGGTTTGTGTTCTCCAA 58.986 45.455 0.00 0.00 0.00 3.53
100 101 3.065371 GTGTGAGGTTTGTGTTCTCCAAG 59.935 47.826 0.00 0.00 0.00 3.61
106 107 3.066760 GGTTTGTGTTCTCCAAGTCCAAG 59.933 47.826 0.00 0.00 0.00 3.61
117 118 2.423577 CAAGTCCAAGGGGTTTCTACG 58.576 52.381 0.00 0.00 34.93 3.51
124 125 1.078637 GGGGTTTCTACGTGCCCTC 60.079 63.158 0.00 0.00 40.86 4.30
126 127 0.108281 GGGTTTCTACGTGCCCTCTC 60.108 60.000 0.00 0.00 38.12 3.20
130 131 2.429610 GTTTCTACGTGCCCTCTCCATA 59.570 50.000 0.00 0.00 0.00 2.74
131 132 2.677542 TCTACGTGCCCTCTCCATAT 57.322 50.000 0.00 0.00 0.00 1.78
136 137 3.279434 ACGTGCCCTCTCCATATTTTTC 58.721 45.455 0.00 0.00 0.00 2.29
137 138 3.278574 CGTGCCCTCTCCATATTTTTCA 58.721 45.455 0.00 0.00 0.00 2.69
143 144 5.320277 CCCTCTCCATATTTTTCATCTCCC 58.680 45.833 0.00 0.00 0.00 4.30
177 178 1.341209 CTACGCAGATCATGGCCACTA 59.659 52.381 8.16 0.00 0.00 2.74
186 187 3.281727 TCATGGCCACTAATGTCTTCC 57.718 47.619 8.16 0.00 0.00 3.46
206 207 8.821894 GTCTTCCAGTATACATTGATGACTTTC 58.178 37.037 18.09 3.61 31.27 2.62
208 209 7.437713 TCCAGTATACATTGATGACTTTCCT 57.562 36.000 5.50 0.00 0.00 3.36
209 210 7.861629 TCCAGTATACATTGATGACTTTCCTT 58.138 34.615 5.50 0.00 0.00 3.36
211 212 8.616076 CCAGTATACATTGATGACTTTCCTTTC 58.384 37.037 5.50 0.00 0.00 2.62
212 213 9.166173 CAGTATACATTGATGACTTTCCTTTCA 57.834 33.333 5.50 0.00 0.00 2.69
213 214 9.167311 AGTATACATTGATGACTTTCCTTTCAC 57.833 33.333 5.50 0.00 0.00 3.18
214 215 5.712152 ACATTGATGACTTTCCTTTCACC 57.288 39.130 0.00 0.00 0.00 4.02
215 216 5.139727 ACATTGATGACTTTCCTTTCACCA 58.860 37.500 0.00 0.00 0.00 4.17
218 219 4.389374 TGATGACTTTCCTTTCACCACTC 58.611 43.478 0.00 0.00 0.00 3.51
228 229 4.223032 TCCTTTCACCACTCCTACAATCTC 59.777 45.833 0.00 0.00 0.00 2.75
247 248 9.856162 ACAATCTCCTAGGTTTAAACAAGTTTA 57.144 29.630 19.57 1.46 34.23 2.01
250 251 9.722184 ATCTCCTAGGTTTAAACAAGTTTACTC 57.278 33.333 19.57 0.00 35.05 2.59
253 254 5.428496 AGGTTTAAACAAGTTTACTCCGC 57.572 39.130 19.57 0.00 35.05 5.54
256 257 4.477302 TTAAACAAGTTTACTCCGCTGC 57.523 40.909 4.97 0.00 35.05 5.25
257 258 1.961793 AACAAGTTTACTCCGCTGCA 58.038 45.000 0.00 0.00 0.00 4.41
267 268 2.345244 CCGCTGCAACAGAGGTCT 59.655 61.111 8.98 0.00 44.47 3.85
269 270 0.037326 CCGCTGCAACAGAGGTCTAA 60.037 55.000 8.98 0.00 44.47 2.10
273 274 2.739379 GCTGCAACAGAGGTCTAAAGAC 59.261 50.000 1.30 1.30 37.74 3.01
274 275 2.989840 CTGCAACAGAGGTCTAAAGACG 59.010 50.000 4.13 0.00 38.64 4.18
275 276 2.626266 TGCAACAGAGGTCTAAAGACGA 59.374 45.455 4.13 0.00 45.65 4.20
276 277 2.987821 GCAACAGAGGTCTAAAGACGAC 59.012 50.000 4.13 1.46 45.65 4.34
277 278 3.552273 GCAACAGAGGTCTAAAGACGACA 60.552 47.826 4.13 0.00 45.65 4.35
278 279 4.230657 CAACAGAGGTCTAAAGACGACAG 58.769 47.826 4.13 1.32 45.65 3.51
287 288 1.140816 AAAGACGACAGCGAGCTTTC 58.859 50.000 0.00 0.00 39.47 2.62
289 290 1.080434 GACGACAGCGAGCTTTCCT 60.080 57.895 5.76 0.00 41.64 3.36
292 293 1.347817 CGACAGCGAGCTTTCCTCAC 61.348 60.000 5.76 0.00 40.78 3.51
294 295 1.080501 CAGCGAGCTTTCCTCACGA 60.081 57.895 0.00 0.00 40.78 4.35
296 297 1.372997 GCGAGCTTTCCTCACGACA 60.373 57.895 0.00 0.00 40.78 4.35
297 298 0.737715 GCGAGCTTTCCTCACGACAT 60.738 55.000 0.00 0.00 40.78 3.06
334 339 1.432023 TTTCCCCCGAAAAGGAGGCT 61.432 55.000 0.00 0.00 45.00 4.58
335 340 2.044946 CCCCCGAAAAGGAGGCTG 60.045 66.667 0.00 0.00 45.00 4.85
337 342 1.559065 CCCCCGAAAAGGAGGCTGTA 61.559 60.000 0.00 0.00 45.00 2.74
342 347 1.835494 GAAAAGGAGGCTGTAACCCC 58.165 55.000 0.00 0.00 0.00 4.95
349 354 2.763902 GCTGTAACCCCTGGCCTT 59.236 61.111 3.32 0.00 0.00 4.35
369 375 5.786311 CCTTTGCATCATTTCAAAAGGAGA 58.214 37.500 6.64 0.00 31.76 3.71
371 377 6.877322 CCTTTGCATCATTTCAAAAGGAGATT 59.123 34.615 6.64 0.00 31.76 2.40
372 378 8.036575 CCTTTGCATCATTTCAAAAGGAGATTA 58.963 33.333 6.64 0.00 31.76 1.75
376 382 6.183360 GCATCATTTCAAAAGGAGATTACCGA 60.183 38.462 0.00 0.00 31.76 4.69
389 395 0.758734 TTACCGATGGATGCAGGAGG 59.241 55.000 0.00 2.02 0.00 4.30
390 396 0.105709 TACCGATGGATGCAGGAGGA 60.106 55.000 11.32 0.00 0.00 3.71
419 426 3.433306 TCGACACCCCAGAAATTTGAT 57.567 42.857 0.00 0.00 0.00 2.57
481 491 7.820648 AGGATTTGTCATTTGTGCTAGTTAAG 58.179 34.615 0.00 0.00 0.00 1.85
482 492 7.448469 AGGATTTGTCATTTGTGCTAGTTAAGT 59.552 33.333 0.00 0.00 0.00 2.24
483 493 8.726988 GGATTTGTCATTTGTGCTAGTTAAGTA 58.273 33.333 0.00 0.00 0.00 2.24
484 494 9.543018 GATTTGTCATTTGTGCTAGTTAAGTAC 57.457 33.333 0.00 0.00 40.92 2.73
495 505 9.146984 TGTGCTAGTTAAGTACATGACATTTAC 57.853 33.333 0.00 3.92 44.73 2.01
496 506 8.601476 GTGCTAGTTAAGTACATGACATTTACC 58.399 37.037 0.00 0.00 40.30 2.85
497 507 8.315482 TGCTAGTTAAGTACATGACATTTACCA 58.685 33.333 0.00 0.00 0.00 3.25
498 508 9.326413 GCTAGTTAAGTACATGACATTTACCAT 57.674 33.333 0.00 1.76 0.00 3.55
508 518 7.558161 CATGACATTTACCATGTGACATACT 57.442 36.000 0.00 0.00 36.36 2.12
509 519 7.633621 CATGACATTTACCATGTGACATACTC 58.366 38.462 0.00 0.00 36.36 2.59
510 520 6.112734 TGACATTTACCATGTGACATACTCC 58.887 40.000 0.00 0.00 31.52 3.85
511 521 5.437060 ACATTTACCATGTGACATACTCCC 58.563 41.667 0.00 0.00 0.00 4.30
512 522 5.191722 ACATTTACCATGTGACATACTCCCT 59.808 40.000 0.00 0.00 0.00 4.20
513 523 5.353394 TTTACCATGTGACATACTCCCTC 57.647 43.478 0.00 0.00 0.00 4.30
514 524 2.119495 ACCATGTGACATACTCCCTCC 58.881 52.381 0.00 0.00 0.00 4.30
515 525 1.069204 CCATGTGACATACTCCCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
516 526 1.757118 CATGTGACATACTCCCTCCGT 59.243 52.381 0.00 0.00 0.00 4.69
517 527 1.471119 TGTGACATACTCCCTCCGTC 58.529 55.000 0.00 0.00 0.00 4.79
518 528 0.745468 GTGACATACTCCCTCCGTCC 59.255 60.000 0.00 0.00 0.00 4.79
519 529 0.750546 TGACATACTCCCTCCGTCCG 60.751 60.000 0.00 0.00 0.00 4.79
520 530 0.465097 GACATACTCCCTCCGTCCGA 60.465 60.000 0.00 0.00 0.00 4.55
521 531 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
522 532 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
523 533 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
524 534 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
525 535 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
526 536 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
527 537 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
528 538 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
529 539 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
530 540 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
531 541 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
532 542 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
533 543 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
534 544 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
535 545 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
536 546 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
537 547 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
538 548 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
539 549 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
540 550 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
541 551 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
542 552 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
543 553 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
551 561 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
552 562 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
553 563 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
554 564 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
555 565 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
556 566 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
559 569 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
565 575 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
573 583 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
597 607 8.816894 AGTTCTAGATACATCTCTTTTTGTCCA 58.183 33.333 0.00 0.00 38.32 4.02
598 608 9.436957 GTTCTAGATACATCTCTTTTTGTCCAA 57.563 33.333 0.00 0.00 38.32 3.53
603 613 9.300681 AGATACATCTCTTTTTGTCCAATTTGA 57.699 29.630 0.00 0.00 29.30 2.69
605 615 9.865321 ATACATCTCTTTTTGTCCAATTTGATG 57.135 29.630 0.00 0.00 35.23 3.07
606 616 7.954835 ACATCTCTTTTTGTCCAATTTGATGA 58.045 30.769 0.00 0.00 33.85 2.92
607 617 7.869429 ACATCTCTTTTTGTCCAATTTGATGAC 59.131 33.333 0.00 0.00 33.85 3.06
608 618 7.345422 TCTCTTTTTGTCCAATTTGATGACA 57.655 32.000 0.00 1.39 37.24 3.58
609 619 7.780064 TCTCTTTTTGTCCAATTTGATGACAA 58.220 30.769 13.76 13.76 44.70 3.18
610 620 7.922278 TCTCTTTTTGTCCAATTTGATGACAAG 59.078 33.333 15.89 9.05 46.27 3.16
611 621 7.555087 TCTTTTTGTCCAATTTGATGACAAGT 58.445 30.769 15.89 0.00 46.27 3.16
612 622 8.690884 TCTTTTTGTCCAATTTGATGACAAGTA 58.309 29.630 15.89 9.46 46.27 2.24
613 623 8.641499 TTTTTGTCCAATTTGATGACAAGTAC 57.359 30.769 15.89 0.00 46.27 2.73
614 624 7.581213 TTTGTCCAATTTGATGACAAGTACT 57.419 32.000 15.89 0.00 46.27 2.73
615 625 7.581213 TTGTCCAATTTGATGACAAGTACTT 57.419 32.000 13.76 1.12 42.36 2.24
616 626 7.581213 TGTCCAATTTGATGACAAGTACTTT 57.419 32.000 5.07 0.00 36.16 2.66
617 627 7.648142 TGTCCAATTTGATGACAAGTACTTTC 58.352 34.615 5.07 7.95 36.16 2.62
618 628 6.797033 GTCCAATTTGATGACAAGTACTTTCG 59.203 38.462 5.07 0.00 37.32 3.46
619 629 6.072728 TCCAATTTGATGACAAGTACTTTCGG 60.073 38.462 5.07 0.00 37.32 4.30
620 630 6.072728 CCAATTTGATGACAAGTACTTTCGGA 60.073 38.462 5.07 0.00 37.32 4.55
621 631 5.917541 TTTGATGACAAGTACTTTCGGAC 57.082 39.130 5.07 0.00 37.32 4.79
622 632 3.571571 TGATGACAAGTACTTTCGGACG 58.428 45.455 5.07 0.00 0.00 4.79
623 633 2.427232 TGACAAGTACTTTCGGACGG 57.573 50.000 5.07 0.00 0.00 4.79
624 634 1.955778 TGACAAGTACTTTCGGACGGA 59.044 47.619 5.07 0.00 0.00 4.69
625 635 2.030540 TGACAAGTACTTTCGGACGGAG 60.031 50.000 5.07 0.00 0.00 4.63
626 636 1.271656 ACAAGTACTTTCGGACGGAGG 59.728 52.381 5.07 0.00 0.00 4.30
627 637 0.893447 AAGTACTTTCGGACGGAGGG 59.107 55.000 1.12 0.00 0.00 4.30
628 638 0.038744 AGTACTTTCGGACGGAGGGA 59.961 55.000 0.00 0.00 0.00 4.20
629 639 0.455005 GTACTTTCGGACGGAGGGAG 59.545 60.000 0.00 0.00 0.00 4.30
630 640 0.038744 TACTTTCGGACGGAGGGAGT 59.961 55.000 0.00 0.00 0.00 3.85
631 641 0.038744 ACTTTCGGACGGAGGGAGTA 59.961 55.000 0.00 0.00 0.00 2.59
632 642 1.341778 ACTTTCGGACGGAGGGAGTAT 60.342 52.381 0.00 0.00 0.00 2.12
633 643 2.092212 ACTTTCGGACGGAGGGAGTATA 60.092 50.000 0.00 0.00 0.00 1.47
634 644 2.965671 TTCGGACGGAGGGAGTATAT 57.034 50.000 0.00 0.00 0.00 0.86
635 645 2.195741 TCGGACGGAGGGAGTATATG 57.804 55.000 0.00 0.00 0.00 1.78
636 646 1.174783 CGGACGGAGGGAGTATATGG 58.825 60.000 0.00 0.00 0.00 2.74
637 647 1.547223 CGGACGGAGGGAGTATATGGT 60.547 57.143 0.00 0.00 0.00 3.55
638 648 2.290514 CGGACGGAGGGAGTATATGGTA 60.291 54.545 0.00 0.00 0.00 3.25
639 649 3.771216 GGACGGAGGGAGTATATGGTAA 58.229 50.000 0.00 0.00 0.00 2.85
640 650 3.762823 GGACGGAGGGAGTATATGGTAAG 59.237 52.174 0.00 0.00 0.00 2.34
641 651 3.163467 ACGGAGGGAGTATATGGTAAGC 58.837 50.000 0.00 0.00 0.00 3.09
642 652 3.162666 CGGAGGGAGTATATGGTAAGCA 58.837 50.000 0.00 0.00 0.00 3.91
643 653 3.576982 CGGAGGGAGTATATGGTAAGCAA 59.423 47.826 0.00 0.00 0.00 3.91
644 654 4.223032 CGGAGGGAGTATATGGTAAGCAAT 59.777 45.833 0.00 0.00 0.00 3.56
645 655 5.624738 CGGAGGGAGTATATGGTAAGCAATC 60.625 48.000 0.00 0.00 0.00 2.67
646 656 5.338463 GGAGGGAGTATATGGTAAGCAATCC 60.338 48.000 0.00 0.00 0.00 3.01
647 657 5.162637 AGGGAGTATATGGTAAGCAATCCA 58.837 41.667 0.00 0.00 38.14 3.41
648 658 5.610982 AGGGAGTATATGGTAAGCAATCCAA 59.389 40.000 0.00 0.00 37.27 3.53
649 659 6.102615 AGGGAGTATATGGTAAGCAATCCAAA 59.897 38.462 0.00 0.00 37.27 3.28
650 660 6.948309 GGGAGTATATGGTAAGCAATCCAAAT 59.052 38.462 0.00 0.00 37.27 2.32
651 661 7.451566 GGGAGTATATGGTAAGCAATCCAAATT 59.548 37.037 0.00 0.00 37.27 1.82
652 662 9.515226 GGAGTATATGGTAAGCAATCCAAATTA 57.485 33.333 0.00 0.00 37.27 1.40
661 671 9.196552 GGTAAGCAATCCAAATTATTTATGAGC 57.803 33.333 0.00 0.00 0.00 4.26
662 672 9.748708 GTAAGCAATCCAAATTATTTATGAGCA 57.251 29.630 0.00 0.00 0.00 4.26
664 674 9.669887 AAGCAATCCAAATTATTTATGAGCAAA 57.330 25.926 0.00 0.00 0.00 3.68
665 675 9.101655 AGCAATCCAAATTATTTATGAGCAAAC 57.898 29.630 0.00 0.00 0.00 2.93
666 676 8.881743 GCAATCCAAATTATTTATGAGCAAACA 58.118 29.630 0.00 0.00 0.00 2.83
701 711 5.678583 TGGCATTTGACCTTTTTCAATCAA 58.321 33.333 0.00 0.00 35.42 2.57
702 712 6.118170 TGGCATTTGACCTTTTTCAATCAAA 58.882 32.000 1.14 1.14 43.23 2.69
703 713 6.600822 TGGCATTTGACCTTTTTCAATCAAAA 59.399 30.769 2.69 0.00 42.57 2.44
704 714 7.134163 GGCATTTGACCTTTTTCAATCAAAAG 58.866 34.615 2.69 0.34 42.57 2.27
705 715 7.012232 GGCATTTGACCTTTTTCAATCAAAAGA 59.988 33.333 7.36 0.00 43.70 2.52
706 716 8.397148 GCATTTGACCTTTTTCAATCAAAAGAA 58.603 29.630 7.36 0.00 43.70 2.52
753 764 7.545965 CGTTATTTGATAGAAATATCCCGCTCT 59.454 37.037 0.00 0.00 0.00 4.09
770 781 2.408050 CTCTATGCCTAACATGTCGGC 58.592 52.381 24.69 24.69 44.02 5.54
771 782 2.036475 CTCTATGCCTAACATGTCGGCT 59.964 50.000 28.71 20.11 44.09 5.52
772 783 2.035961 TCTATGCCTAACATGTCGGCTC 59.964 50.000 28.71 10.95 44.09 4.70
773 784 0.833287 ATGCCTAACATGTCGGCTCT 59.167 50.000 28.71 18.44 44.09 4.09
774 785 0.175760 TGCCTAACATGTCGGCTCTC 59.824 55.000 28.71 10.13 44.09 3.20
775 786 0.175760 GCCTAACATGTCGGCTCTCA 59.824 55.000 24.35 0.00 40.62 3.27
776 787 1.202580 GCCTAACATGTCGGCTCTCAT 60.203 52.381 24.35 0.00 40.62 2.90
777 788 2.748605 CCTAACATGTCGGCTCTCATC 58.251 52.381 0.00 0.00 0.00 2.92
778 789 2.363680 CCTAACATGTCGGCTCTCATCT 59.636 50.000 0.00 0.00 0.00 2.90
779 790 2.593346 AACATGTCGGCTCTCATCTC 57.407 50.000 0.00 0.00 0.00 2.75
780 791 1.774110 ACATGTCGGCTCTCATCTCT 58.226 50.000 0.00 0.00 0.00 3.10
781 792 1.408340 ACATGTCGGCTCTCATCTCTG 59.592 52.381 0.00 0.00 0.00 3.35
782 793 1.680207 CATGTCGGCTCTCATCTCTGA 59.320 52.381 0.00 0.00 0.00 3.27
783 794 2.064434 TGTCGGCTCTCATCTCTGAT 57.936 50.000 0.00 0.00 0.00 2.90
784 795 1.952990 TGTCGGCTCTCATCTCTGATC 59.047 52.381 0.00 0.00 0.00 2.92
785 796 1.952990 GTCGGCTCTCATCTCTGATCA 59.047 52.381 0.00 0.00 0.00 2.92
824 835 1.750332 CGCAGTCTGAGGGAGAGAGAT 60.750 57.143 3.32 0.00 0.00 2.75
826 837 3.766545 GCAGTCTGAGGGAGAGAGATAT 58.233 50.000 3.32 0.00 0.00 1.63
849 866 2.196595 CTTCTCCTAACCCCATCACCA 58.803 52.381 0.00 0.00 0.00 4.17
1044 1062 1.906824 TGGCTTCTTCGACTCCCGT 60.907 57.895 0.00 0.00 39.75 5.28
1322 1340 1.169577 GCTTCGACAGGAGAGAGTGA 58.830 55.000 0.00 0.00 0.00 3.41
1323 1341 1.132262 GCTTCGACAGGAGAGAGTGAG 59.868 57.143 0.00 0.00 0.00 3.51
1326 1344 1.065782 TCGACAGGAGAGAGTGAGAGG 60.066 57.143 0.00 0.00 0.00 3.69
1335 1357 1.843851 GAGAGTGAGAGGGGAGAGAGA 59.156 57.143 0.00 0.00 0.00 3.10
1448 1470 3.472652 AGTTCGGTTGTCTTAATGCACA 58.527 40.909 0.00 0.00 0.00 4.57
1651 1673 2.172679 GGACGAGAAGGAGAAGGTCTT 58.827 52.381 0.00 0.00 0.00 3.01
1652 1674 2.164827 GGACGAGAAGGAGAAGGTCTTC 59.835 54.545 2.69 2.69 39.55 2.87
1680 1702 1.527034 TGGAAACACTGCTGATGCTC 58.473 50.000 0.00 0.00 36.06 4.26
1853 1875 2.801631 GGAGCAGTATGAGGCGGCT 61.802 63.158 13.09 13.09 39.69 5.52
1862 1884 3.797353 GAGGCGGCTTCCATGGGA 61.797 66.667 14.76 0.69 0.00 4.37
1864 1886 4.115199 GGCGGCTTCCATGGGAGT 62.115 66.667 21.69 0.00 31.21 3.85
1866 1888 2.124570 CGGCTTCCATGGGAGTGG 60.125 66.667 21.69 9.80 40.76 4.00
2002 2030 4.959210 TGAGAACATAGGGAAGGAAGAGAG 59.041 45.833 0.00 0.00 0.00 3.20
2050 2081 3.813443 CAGGTGGAAGGATTAGTGATGG 58.187 50.000 0.00 0.00 0.00 3.51
2070 2101 0.442310 CGGTGATGCTGTTAACACGG 59.558 55.000 3.59 0.00 34.59 4.94
2132 2163 2.357952 GTCCAAGAAGAAACCAAAGCGT 59.642 45.455 0.00 0.00 0.00 5.07
2150 2181 4.952460 AGCGTAAAAAGTCTGGTGAGTTA 58.048 39.130 0.00 0.00 34.99 2.24
2184 2215 3.320673 AGTTTGAAAGCTAGAGTCGGG 57.679 47.619 0.00 0.00 0.00 5.14
2206 2237 6.585416 GGGCAATTTGAATTTAGGATCATGT 58.415 36.000 0.00 0.00 0.00 3.21
2437 2468 7.600375 AGCATGTATAAGATGTGTACTGTATGC 59.400 37.037 0.00 0.00 34.04 3.14
2494 2525 3.213506 TGAGCATGCATATTGTACCCAC 58.786 45.455 21.98 0.00 0.00 4.61
2550 2581 4.452455 GGCCGTAATATTGGATGTCTTGAG 59.548 45.833 0.00 0.00 0.00 3.02
2640 2671 6.829229 ATCGAAGATATGGTACCGATGTTA 57.171 37.500 7.57 0.00 45.12 2.41
2704 2740 9.563898 CACACAATGGTATCATGATATATTTGC 57.436 33.333 18.18 4.65 33.18 3.68
2776 2812 6.466885 TTAGGTCTATCAGTACCTTTGCTC 57.533 41.667 0.00 0.00 43.77 4.26
2800 2836 9.976511 CTCTATCCTATATACCTAAGAGAGTCG 57.023 40.741 0.00 0.00 32.76 4.18
2836 2872 8.133627 ACTTATTTATCTCAACATGCAAGCATC 58.866 33.333 4.24 0.00 33.90 3.91
2859 2895 5.372363 TCCCACCTCACCATACAATTATGAT 59.628 40.000 0.00 0.00 37.86 2.45
2904 2940 5.857471 TGGAATTATGCATGGGAAAAGAG 57.143 39.130 10.16 0.00 0.00 2.85
3071 3108 7.493499 AAATATTCATCAACCAATTCCCACA 57.507 32.000 0.00 0.00 0.00 4.17
3095 3132 0.315568 CACGCAGGGTATCCTCTAGC 59.684 60.000 0.00 0.00 42.67 3.42
3333 3370 8.956533 AAAAATTTGCTAGCTTTAAGTTGGAA 57.043 26.923 17.23 0.00 0.00 3.53
3438 3475 3.566322 AGGAGTCATACGTAGCTCATGAC 59.434 47.826 16.97 16.97 45.76 3.06
3537 3574 0.101759 ACATGAGCAAATGCCGCATC 59.898 50.000 6.27 0.00 43.38 3.91
3567 3604 3.795688 TCCTGCATCTTTGGAAACTCT 57.204 42.857 0.00 0.00 0.00 3.24
3629 3666 5.947228 TTCTTGGCACATAACTCTTTGAG 57.053 39.130 0.00 0.00 39.30 3.02
3730 3767 6.213677 GTTCCTTTGTTCTTGGTATGGTTTC 58.786 40.000 0.00 0.00 0.00 2.78
3739 3776 4.518970 TCTTGGTATGGTTTCTTGCAGAAC 59.481 41.667 0.00 0.00 33.26 3.01
3758 3795 6.276847 CAGAACGTTTAGGATCTCATTAGCT 58.723 40.000 0.46 0.00 0.00 3.32
3839 3876 6.368791 TGCTGATTAGTTTCACATACAGACAC 59.631 38.462 0.00 0.00 0.00 3.67
3887 3924 5.509716 TGAAATGCAATCACATCTCCATC 57.490 39.130 0.00 0.00 0.00 3.51
3992 4037 2.225491 CACCATAACCACACTCCAAACG 59.775 50.000 0.00 0.00 0.00 3.60
4004 4049 4.037089 ACACTCCAAACGTAAACAATTCCC 59.963 41.667 0.00 0.00 0.00 3.97
4005 4050 4.036971 CACTCCAAACGTAAACAATTCCCA 59.963 41.667 0.00 0.00 0.00 4.37
4046 4091 8.621532 ATGTCGCAACATAAAATATCCTGTAT 57.378 30.769 0.00 0.00 44.38 2.29
4245 4297 2.744202 GCCTTATAATGACATGCGGAGG 59.256 50.000 0.00 0.00 0.00 4.30
4324 4376 6.423302 AGAGCGAGTTTCTGCATAATATCTTG 59.577 38.462 0.00 0.00 0.00 3.02
4354 4406 4.804868 TTGCCATGCATGTATTTCAGTT 57.195 36.364 24.58 0.00 38.76 3.16
4375 4428 8.209917 CAGTTAAGGACTCAACTGTAGTTTTT 57.790 34.615 7.11 0.00 44.24 1.94
4390 4443 7.174946 ACTGTAGTTTTTAGTGTTATGCATGCT 59.825 33.333 20.33 7.07 0.00 3.79
4420 4473 5.111293 CCATTGGCAAATCATAACCTTGTC 58.889 41.667 3.01 0.00 0.00 3.18
4428 4481 5.715439 AATCATAACCTTGTCATCTCCCA 57.285 39.130 0.00 0.00 0.00 4.37
4464 4517 1.378531 TGCTCAACACACACTGGTTC 58.621 50.000 0.00 0.00 0.00 3.62
4465 4518 1.339535 TGCTCAACACACACTGGTTCA 60.340 47.619 0.00 0.00 0.00 3.18
4466 4519 1.949525 GCTCAACACACACTGGTTCAT 59.050 47.619 0.00 0.00 0.00 2.57
4530 4583 3.319198 GGGAGCCAGTTGTCCCGA 61.319 66.667 0.00 0.00 43.27 5.14
4538 4591 2.421529 GCCAGTTGTCCCGATCCTTATT 60.422 50.000 0.00 0.00 0.00 1.40
4568 4621 9.871238 ACAAGTAACAGTACATACTATCCAAAG 57.129 33.333 0.00 0.00 34.13 2.77
4647 4701 6.866010 TTGATTCAGAATATTGGATGGTCG 57.134 37.500 0.00 0.00 0.00 4.79
4719 4774 1.819903 TGTCACCATGTACCGATTCGA 59.180 47.619 7.83 0.00 0.00 3.71
4734 4789 9.582223 GTACCGATTCGAAAAAGATGATATTTC 57.418 33.333 7.83 0.00 0.00 2.17
4803 4859 9.516314 GCTGTAATTTTTATCAAATGGGTAGTC 57.484 33.333 0.00 0.00 0.00 2.59
4883 4942 4.223032 ACACCATAGGTCCAGTAGTTTCAG 59.777 45.833 0.00 0.00 31.02 3.02
4903 4962 6.877611 TCAGTACAGAATTTTGAACCCTTC 57.122 37.500 2.48 0.00 0.00 3.46
4917 4976 1.229658 CCTTCTCCACTCCCCCTGT 60.230 63.158 0.00 0.00 0.00 4.00
5051 5110 9.588096 AGTAATCCATCTTGGTTTCTAAAACTT 57.412 29.630 2.90 0.00 39.03 2.66
5074 5133 0.747255 AGTGTCAGTGTCGCTGTCTT 59.253 50.000 13.00 0.00 45.23 3.01
5193 5252 4.285863 TGTTTCCCATGGTTTGTTCTCTT 58.714 39.130 11.73 0.00 0.00 2.85
5210 5269 5.034852 TCTCTTCATTGACACTGGAACAA 57.965 39.130 0.00 0.00 38.70 2.83
5218 5277 5.689383 TTGACACTGGAACAATAGCTTTC 57.311 39.130 0.00 0.00 38.70 2.62
5221 5280 5.827797 TGACACTGGAACAATAGCTTTCTTT 59.172 36.000 0.00 0.00 38.70 2.52
5246 5305 2.224621 CCCAGAGATTGTGTGTGGTCTT 60.225 50.000 0.00 0.00 0.00 3.01
5336 6397 2.099062 GCTGTCCGATTTGCTGCG 59.901 61.111 0.00 0.00 0.00 5.18
5396 6460 4.351111 AGAAAAGACCCTGAACTACCATGT 59.649 41.667 0.00 0.00 0.00 3.21
5433 6497 2.415491 CGATCAGCACTTCAGTTCGGTA 60.415 50.000 0.00 0.00 0.00 4.02
5579 6644 7.989826 AGGTAAATGTGCTTTGTCAGATAATC 58.010 34.615 0.00 0.00 0.00 1.75
5643 6708 4.641541 TGAACCATCCTGTTCTGCAATATG 59.358 41.667 5.61 0.00 43.96 1.78
5660 6725 7.816640 TGCAATATGGTTTGTCTAAGAACTTC 58.183 34.615 0.00 0.00 0.00 3.01
5777 6842 9.846248 GGTTATGAATATGCTATTTCCAATCAC 57.154 33.333 0.00 0.00 0.00 3.06
5786 6851 6.758254 TGCTATTTCCAATCACTATGATCGA 58.242 36.000 0.00 0.00 35.76 3.59
6194 7262 4.097892 CCTCAATATGTTTAAGGTGGGTGC 59.902 45.833 0.00 0.00 0.00 5.01
6198 7266 0.106619 TGTTTAAGGTGGGTGCGGTT 60.107 50.000 0.00 0.00 0.00 4.44
6246 7314 8.706492 ACGACATATCCGTTTTAGTTTAATCA 57.294 30.769 0.00 0.00 36.83 2.57
6543 7616 1.136446 CCGCCGTTCTTTTTGTACTCG 60.136 52.381 0.00 0.00 0.00 4.18
6554 7627 0.320073 TTGTACTCGACAAAGGCGGG 60.320 55.000 0.00 0.00 45.23 6.13
6589 7662 5.108385 AGCTGTTTGGTTTCATAAGTTCG 57.892 39.130 0.00 0.00 0.00 3.95
6716 7789 8.902806 TGTATTCTCATGTAATCCAAAATGGTC 58.097 33.333 0.00 0.00 39.03 4.02
6813 7887 5.184671 GCCTGAACTTTTGGAATCTTCAGAT 59.815 40.000 8.62 0.00 40.11 2.90
6819 7893 9.136952 GAACTTTTGGAATCTTCAGATTTGATG 57.863 33.333 3.54 0.00 44.14 3.07
7063 8139 7.132213 CACTGTCAATACAAGTTACAAACCAG 58.868 38.462 0.00 0.00 34.49 4.00
7166 8252 6.261603 TCAGCTGATCGATGAATTAGCAATTT 59.738 34.615 13.74 0.00 39.90 1.82
7167 8253 7.442062 TCAGCTGATCGATGAATTAGCAATTTA 59.558 33.333 13.74 0.00 39.90 1.40
7249 8335 5.955355 CCAGAGGTAATTAAAATTCACCCCA 59.045 40.000 0.00 0.00 0.00 4.96
7267 8353 4.202441 CCCCAATTCAGTTATGTGAGGAG 58.798 47.826 0.00 0.00 0.00 3.69
7295 8381 0.755079 TGAAGATCCCCAGCATCTCG 59.245 55.000 0.00 0.00 29.82 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.130340 GGACCAAGACAACAACATTGTGT 59.870 43.478 0.00 0.00 41.31 3.72
1 2 3.381272 AGGACCAAGACAACAACATTGTG 59.619 43.478 0.00 0.00 41.31 3.33
2 3 3.631250 AGGACCAAGACAACAACATTGT 58.369 40.909 0.00 0.00 44.72 2.71
3 4 4.610945 GAAGGACCAAGACAACAACATTG 58.389 43.478 0.00 0.00 0.00 2.82
4 5 3.315191 CGAAGGACCAAGACAACAACATT 59.685 43.478 0.00 0.00 0.00 2.71
5 6 2.878406 CGAAGGACCAAGACAACAACAT 59.122 45.455 0.00 0.00 0.00 2.71
6 7 2.285083 CGAAGGACCAAGACAACAACA 58.715 47.619 0.00 0.00 0.00 3.33
37 38 2.435938 GCCAATCTTCGCCCGTCA 60.436 61.111 0.00 0.00 0.00 4.35
41 42 0.678048 AGACAAGCCAATCTTCGCCC 60.678 55.000 0.00 0.00 31.27 6.13
61 62 4.116328 CGCTCTTCGACGAGGCCA 62.116 66.667 19.33 0.00 41.67 5.36
62 63 4.117661 ACGCTCTTCGACGAGGCC 62.118 66.667 19.33 0.00 41.67 5.19
70 71 0.508641 CAAACCTCACACGCTCTTCG 59.491 55.000 0.00 0.00 45.38 3.79
95 96 1.529744 AGAAACCCCTTGGACTTGGA 58.470 50.000 0.00 0.00 34.81 3.53
96 97 2.791655 GTAGAAACCCCTTGGACTTGG 58.208 52.381 0.00 0.00 34.81 3.61
97 98 2.224450 ACGTAGAAACCCCTTGGACTTG 60.224 50.000 0.00 0.00 34.81 3.16
98 99 2.052468 ACGTAGAAACCCCTTGGACTT 58.948 47.619 0.00 0.00 34.81 3.01
99 100 1.346722 CACGTAGAAACCCCTTGGACT 59.653 52.381 0.00 0.00 34.81 3.85
100 101 1.804601 CACGTAGAAACCCCTTGGAC 58.195 55.000 0.00 0.00 34.81 4.02
106 107 1.078637 GAGGGCACGTAGAAACCCC 60.079 63.158 6.25 0.00 43.96 4.95
117 118 5.136105 AGATGAAAAATATGGAGAGGGCAC 58.864 41.667 0.00 0.00 0.00 5.01
124 125 3.187227 CGCGGGAGATGAAAAATATGGAG 59.813 47.826 0.00 0.00 0.00 3.86
126 127 2.878406 ACGCGGGAGATGAAAAATATGG 59.122 45.455 12.47 0.00 0.00 2.74
130 131 1.094785 CCACGCGGGAGATGAAAAAT 58.905 50.000 11.66 0.00 40.01 1.82
131 132 1.582610 GCCACGCGGGAGATGAAAAA 61.583 55.000 11.66 0.00 40.01 1.94
160 161 1.534163 CATTAGTGGCCATGATCTGCG 59.466 52.381 9.72 0.00 0.00 5.18
162 163 4.082665 AGACATTAGTGGCCATGATCTG 57.917 45.455 9.72 6.22 31.93 2.90
169 170 1.985159 ACTGGAAGACATTAGTGGCCA 59.015 47.619 0.00 0.00 37.43 5.36
177 178 8.489489 AGTCATCAATGTATACTGGAAGACATT 58.511 33.333 19.47 5.65 41.92 2.71
186 187 9.166173 TGAAAGGAAAGTCATCAATGTATACTG 57.834 33.333 4.17 0.00 0.00 2.74
206 207 4.508662 GAGATTGTAGGAGTGGTGAAAGG 58.491 47.826 0.00 0.00 0.00 3.11
208 209 4.168101 AGGAGATTGTAGGAGTGGTGAAA 58.832 43.478 0.00 0.00 0.00 2.69
209 210 3.791320 AGGAGATTGTAGGAGTGGTGAA 58.209 45.455 0.00 0.00 0.00 3.18
211 212 3.639094 CCTAGGAGATTGTAGGAGTGGTG 59.361 52.174 1.05 0.00 38.54 4.17
212 213 3.272551 ACCTAGGAGATTGTAGGAGTGGT 59.727 47.826 17.98 0.00 38.54 4.16
213 214 3.917300 ACCTAGGAGATTGTAGGAGTGG 58.083 50.000 17.98 0.00 38.54 4.00
214 215 5.941555 AAACCTAGGAGATTGTAGGAGTG 57.058 43.478 17.98 0.00 38.54 3.51
215 216 7.456902 TGTTTAAACCTAGGAGATTGTAGGAGT 59.543 37.037 17.98 0.00 38.54 3.85
218 219 8.101419 ACTTGTTTAAACCTAGGAGATTGTAGG 58.899 37.037 17.98 1.80 41.58 3.18
228 229 6.347969 GCGGAGTAAACTTGTTTAAACCTAGG 60.348 42.308 15.59 7.41 0.00 3.02
247 248 2.345244 CCTCTGTTGCAGCGGAGT 59.655 61.111 30.31 0.00 38.50 3.85
250 251 0.037326 TTAGACCTCTGTTGCAGCGG 60.037 55.000 2.41 2.41 41.60 5.52
253 254 2.989840 CGTCTTTAGACCTCTGTTGCAG 59.010 50.000 4.40 0.00 41.86 4.41
256 257 4.230657 CTGTCGTCTTTAGACCTCTGTTG 58.769 47.826 4.40 0.00 41.86 3.33
257 258 3.305471 GCTGTCGTCTTTAGACCTCTGTT 60.305 47.826 4.40 0.00 41.86 3.16
267 268 2.325761 GAAAGCTCGCTGTCGTCTTTA 58.674 47.619 0.00 0.00 38.53 1.85
269 270 0.667792 GGAAAGCTCGCTGTCGTCTT 60.668 55.000 3.18 0.00 36.96 3.01
273 274 1.080501 TGAGGAAAGCTCGCTGTCG 60.081 57.895 3.18 0.00 31.18 4.35
274 275 1.347817 CGTGAGGAAAGCTCGCTGTC 61.348 60.000 0.31 0.31 0.00 3.51
275 276 1.373497 CGTGAGGAAAGCTCGCTGT 60.373 57.895 0.00 0.00 0.00 4.40
276 277 1.080501 TCGTGAGGAAAGCTCGCTG 60.081 57.895 0.00 0.00 0.00 5.18
277 278 1.080434 GTCGTGAGGAAAGCTCGCT 60.080 57.895 0.00 0.00 0.00 4.93
278 279 0.737715 ATGTCGTGAGGAAAGCTCGC 60.738 55.000 0.00 0.00 0.00 5.03
319 320 0.326927 TTACAGCCTCCTTTTCGGGG 59.673 55.000 0.00 0.00 0.00 5.73
320 321 1.450025 GTTACAGCCTCCTTTTCGGG 58.550 55.000 0.00 0.00 0.00 5.14
321 322 1.450025 GGTTACAGCCTCCTTTTCGG 58.550 55.000 0.00 0.00 0.00 4.30
322 323 1.450025 GGGTTACAGCCTCCTTTTCG 58.550 55.000 0.00 0.00 31.81 3.46
334 339 1.228737 GCAAAGGCCAGGGGTTACA 60.229 57.895 5.01 0.00 0.00 2.41
335 340 0.614697 ATGCAAAGGCCAGGGGTTAC 60.615 55.000 5.01 0.00 40.13 2.50
337 342 1.610379 GATGCAAAGGCCAGGGGTT 60.610 57.895 5.01 0.00 40.13 4.11
342 347 3.322211 TTGAAATGATGCAAAGGCCAG 57.678 42.857 5.01 0.00 40.13 4.85
349 354 7.322664 GGTAATCTCCTTTTGAAATGATGCAA 58.677 34.615 0.00 0.00 0.00 4.08
369 375 1.349026 CCTCCTGCATCCATCGGTAAT 59.651 52.381 0.00 0.00 0.00 1.89
371 377 0.105709 TCCTCCTGCATCCATCGGTA 60.106 55.000 0.00 0.00 0.00 4.02
372 378 0.982852 TTCCTCCTGCATCCATCGGT 60.983 55.000 0.00 0.00 0.00 4.69
395 401 2.951229 ATTTCTGGGGTGTCGAAGTT 57.049 45.000 0.00 0.00 0.00 2.66
402 408 6.933514 AATACAATCAAATTTCTGGGGTGT 57.066 33.333 0.00 0.00 0.00 4.16
484 494 7.254898 GGAGTATGTCACATGGTAAATGTCATG 60.255 40.741 0.00 0.00 44.42 3.07
485 495 6.767902 GGAGTATGTCACATGGTAAATGTCAT 59.232 38.462 0.00 0.00 0.00 3.06
486 496 6.112734 GGAGTATGTCACATGGTAAATGTCA 58.887 40.000 0.00 0.00 0.00 3.58
487 497 5.527582 GGGAGTATGTCACATGGTAAATGTC 59.472 44.000 0.00 0.00 0.00 3.06
488 498 5.191722 AGGGAGTATGTCACATGGTAAATGT 59.808 40.000 0.00 0.00 0.00 2.71
489 499 5.684704 AGGGAGTATGTCACATGGTAAATG 58.315 41.667 0.00 0.00 0.00 2.32
490 500 5.163195 GGAGGGAGTATGTCACATGGTAAAT 60.163 44.000 0.00 0.00 0.00 1.40
491 501 4.163458 GGAGGGAGTATGTCACATGGTAAA 59.837 45.833 0.00 0.00 0.00 2.01
492 502 3.709653 GGAGGGAGTATGTCACATGGTAA 59.290 47.826 0.00 0.00 0.00 2.85
493 503 3.305720 GGAGGGAGTATGTCACATGGTA 58.694 50.000 0.00 0.00 0.00 3.25
494 504 2.119495 GGAGGGAGTATGTCACATGGT 58.881 52.381 0.00 0.00 0.00 3.55
495 505 1.069204 CGGAGGGAGTATGTCACATGG 59.931 57.143 0.00 0.00 0.00 3.66
496 506 1.757118 ACGGAGGGAGTATGTCACATG 59.243 52.381 0.00 0.00 0.00 3.21
497 507 2.032620 GACGGAGGGAGTATGTCACAT 58.967 52.381 0.00 0.00 0.00 3.21
498 508 1.471119 GACGGAGGGAGTATGTCACA 58.529 55.000 0.00 0.00 0.00 3.58
499 509 0.745468 GGACGGAGGGAGTATGTCAC 59.255 60.000 0.00 0.00 0.00 3.67
500 510 0.750546 CGGACGGAGGGAGTATGTCA 60.751 60.000 0.00 0.00 0.00 3.58
501 511 0.465097 TCGGACGGAGGGAGTATGTC 60.465 60.000 0.00 0.00 0.00 3.06
502 512 0.033796 TTCGGACGGAGGGAGTATGT 60.034 55.000 0.00 0.00 0.00 2.29
503 513 1.108776 TTTCGGACGGAGGGAGTATG 58.891 55.000 0.00 0.00 0.00 2.39
504 514 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
505 515 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
506 516 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
507 517 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
508 518 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
509 519 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
510 520 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
511 521 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
512 522 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
513 523 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
514 524 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
515 525 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
516 526 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
517 527 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
525 535 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
526 536 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
527 537 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
528 538 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
529 539 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
530 540 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
533 543 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
539 549 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
547 557 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
571 581 8.816894 TGGACAAAAAGAGATGTATCTAGAACT 58.183 33.333 0.00 0.00 37.25 3.01
572 582 9.436957 TTGGACAAAAAGAGATGTATCTAGAAC 57.563 33.333 0.00 0.00 37.25 3.01
577 587 9.300681 TCAAATTGGACAAAAAGAGATGTATCT 57.699 29.630 0.00 0.00 40.50 1.98
579 589 9.865321 CATCAAATTGGACAAAAAGAGATGTAT 57.135 29.630 0.00 0.00 0.00 2.29
580 590 9.076781 TCATCAAATTGGACAAAAAGAGATGTA 57.923 29.630 0.00 0.00 33.02 2.29
581 591 7.869429 GTCATCAAATTGGACAAAAAGAGATGT 59.131 33.333 0.00 0.00 33.02 3.06
582 592 7.868922 TGTCATCAAATTGGACAAAAAGAGATG 59.131 33.333 3.22 0.00 38.50 2.90
583 593 7.954835 TGTCATCAAATTGGACAAAAAGAGAT 58.045 30.769 3.22 0.00 38.50 2.75
584 594 7.345422 TGTCATCAAATTGGACAAAAAGAGA 57.655 32.000 3.22 0.00 38.50 3.10
591 601 7.581213 AAGTACTTGTCATCAAATTGGACAA 57.419 32.000 7.48 14.08 46.09 3.18
592 602 7.519809 CGAAAGTACTTGTCATCAAATTGGACA 60.520 37.037 9.34 1.80 39.60 4.02
593 603 6.797033 CGAAAGTACTTGTCATCAAATTGGAC 59.203 38.462 9.34 0.00 32.87 4.02
594 604 6.072728 CCGAAAGTACTTGTCATCAAATTGGA 60.073 38.462 9.34 0.00 32.87 3.53
595 605 6.072728 TCCGAAAGTACTTGTCATCAAATTGG 60.073 38.462 9.34 3.63 32.87 3.16
596 606 6.797033 GTCCGAAAGTACTTGTCATCAAATTG 59.203 38.462 9.34 0.00 32.87 2.32
597 607 6.347402 CGTCCGAAAGTACTTGTCATCAAATT 60.347 38.462 9.34 0.00 32.87 1.82
598 608 5.120208 CGTCCGAAAGTACTTGTCATCAAAT 59.880 40.000 9.34 0.00 32.87 2.32
599 609 4.446385 CGTCCGAAAGTACTTGTCATCAAA 59.554 41.667 9.34 0.00 32.87 2.69
600 610 3.985279 CGTCCGAAAGTACTTGTCATCAA 59.015 43.478 9.34 0.00 0.00 2.57
601 611 3.571571 CGTCCGAAAGTACTTGTCATCA 58.428 45.455 9.34 0.00 0.00 3.07
602 612 2.921754 CCGTCCGAAAGTACTTGTCATC 59.078 50.000 9.34 1.80 0.00 2.92
603 613 2.559668 TCCGTCCGAAAGTACTTGTCAT 59.440 45.455 9.34 0.00 0.00 3.06
604 614 1.955778 TCCGTCCGAAAGTACTTGTCA 59.044 47.619 9.34 0.00 0.00 3.58
605 615 2.593257 CTCCGTCCGAAAGTACTTGTC 58.407 52.381 9.34 8.10 0.00 3.18
606 616 1.271656 CCTCCGTCCGAAAGTACTTGT 59.728 52.381 9.34 0.00 0.00 3.16
607 617 1.403780 CCCTCCGTCCGAAAGTACTTG 60.404 57.143 9.34 0.00 0.00 3.16
608 618 0.893447 CCCTCCGTCCGAAAGTACTT 59.107 55.000 1.12 1.12 0.00 2.24
609 619 0.038744 TCCCTCCGTCCGAAAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
610 620 0.455005 CTCCCTCCGTCCGAAAGTAC 59.545 60.000 0.00 0.00 0.00 2.73
611 621 0.038744 ACTCCCTCCGTCCGAAAGTA 59.961 55.000 0.00 0.00 0.00 2.24
612 622 0.038744 TACTCCCTCCGTCCGAAAGT 59.961 55.000 0.00 0.00 0.00 2.66
613 623 1.400737 ATACTCCCTCCGTCCGAAAG 58.599 55.000 0.00 0.00 0.00 2.62
614 624 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
615 625 2.511659 CATATACTCCCTCCGTCCGAA 58.488 52.381 0.00 0.00 0.00 4.30
616 626 1.271762 CCATATACTCCCTCCGTCCGA 60.272 57.143 0.00 0.00 0.00 4.55
617 627 1.174783 CCATATACTCCCTCCGTCCG 58.825 60.000 0.00 0.00 0.00 4.79
618 628 2.305858 ACCATATACTCCCTCCGTCC 57.694 55.000 0.00 0.00 0.00 4.79
619 629 3.193056 GCTTACCATATACTCCCTCCGTC 59.807 52.174 0.00 0.00 0.00 4.79
620 630 3.163467 GCTTACCATATACTCCCTCCGT 58.837 50.000 0.00 0.00 0.00 4.69
621 631 3.162666 TGCTTACCATATACTCCCTCCG 58.837 50.000 0.00 0.00 0.00 4.63
622 632 5.338463 GGATTGCTTACCATATACTCCCTCC 60.338 48.000 0.00 0.00 0.00 4.30
623 633 5.248477 TGGATTGCTTACCATATACTCCCTC 59.752 44.000 0.00 0.00 0.00 4.30
624 634 5.162637 TGGATTGCTTACCATATACTCCCT 58.837 41.667 0.00 0.00 0.00 4.20
625 635 5.499004 TGGATTGCTTACCATATACTCCC 57.501 43.478 0.00 0.00 0.00 4.30
626 636 8.409358 AATTTGGATTGCTTACCATATACTCC 57.591 34.615 0.00 0.00 36.02 3.85
635 645 9.196552 GCTCATAAATAATTTGGATTGCTTACC 57.803 33.333 0.00 0.00 0.00 2.85
636 646 9.748708 TGCTCATAAATAATTTGGATTGCTTAC 57.251 29.630 0.00 0.00 0.00 2.34
638 648 9.669887 TTTGCTCATAAATAATTTGGATTGCTT 57.330 25.926 0.00 0.00 0.00 3.91
639 649 9.101655 GTTTGCTCATAAATAATTTGGATTGCT 57.898 29.630 0.00 0.00 0.00 3.91
640 650 8.881743 TGTTTGCTCATAAATAATTTGGATTGC 58.118 29.630 0.00 0.00 0.00 3.56
668 678 5.806654 AGGTCAAATGCCATGTACTTTTT 57.193 34.783 0.00 0.00 0.00 1.94
669 679 5.806654 AAGGTCAAATGCCATGTACTTTT 57.193 34.783 0.00 0.00 0.00 2.27
670 680 5.806654 AAAGGTCAAATGCCATGTACTTT 57.193 34.783 0.00 0.00 0.00 2.66
671 681 5.806654 AAAAGGTCAAATGCCATGTACTT 57.193 34.783 0.00 0.00 0.00 2.24
672 682 5.304101 TGAAAAAGGTCAAATGCCATGTACT 59.696 36.000 0.00 0.00 0.00 2.73
673 683 5.537188 TGAAAAAGGTCAAATGCCATGTAC 58.463 37.500 0.00 0.00 0.00 2.90
703 713 9.256477 ACGTGTTCTTTTTCTTTTTCTTTTTCT 57.744 25.926 0.00 0.00 0.00 2.52
704 714 9.858247 AACGTGTTCTTTTTCTTTTTCTTTTTC 57.142 25.926 0.00 0.00 0.00 2.29
728 738 8.779354 AGAGCGGGATATTTCTATCAAATAAC 57.221 34.615 0.00 0.00 36.27 1.89
770 781 3.564264 TGGGAGTGATCAGAGATGAGAG 58.436 50.000 0.00 0.00 0.00 3.20
771 782 3.677156 TGGGAGTGATCAGAGATGAGA 57.323 47.619 0.00 0.00 0.00 3.27
772 783 4.154176 AGATGGGAGTGATCAGAGATGAG 58.846 47.826 0.00 0.00 0.00 2.90
773 784 4.151121 GAGATGGGAGTGATCAGAGATGA 58.849 47.826 0.00 0.00 0.00 2.92
774 785 3.896272 TGAGATGGGAGTGATCAGAGATG 59.104 47.826 0.00 0.00 0.00 2.90
775 786 3.896888 GTGAGATGGGAGTGATCAGAGAT 59.103 47.826 0.00 0.00 0.00 2.75
776 787 3.295093 GTGAGATGGGAGTGATCAGAGA 58.705 50.000 0.00 0.00 0.00 3.10
777 788 2.364970 GGTGAGATGGGAGTGATCAGAG 59.635 54.545 0.00 0.00 0.00 3.35
778 789 2.292455 TGGTGAGATGGGAGTGATCAGA 60.292 50.000 0.00 0.00 0.00 3.27
779 790 2.113807 TGGTGAGATGGGAGTGATCAG 58.886 52.381 0.00 0.00 0.00 2.90
780 791 2.237143 GTTGGTGAGATGGGAGTGATCA 59.763 50.000 0.00 0.00 0.00 2.92
781 792 2.420687 GGTTGGTGAGATGGGAGTGATC 60.421 54.545 0.00 0.00 0.00 2.92
782 793 1.561542 GGTTGGTGAGATGGGAGTGAT 59.438 52.381 0.00 0.00 0.00 3.06
783 794 0.984230 GGTTGGTGAGATGGGAGTGA 59.016 55.000 0.00 0.00 0.00 3.41
784 795 0.987294 AGGTTGGTGAGATGGGAGTG 59.013 55.000 0.00 0.00 0.00 3.51
785 796 1.280457 GAGGTTGGTGAGATGGGAGT 58.720 55.000 0.00 0.00 0.00 3.85
824 835 5.148502 GTGATGGGGTTAGGAGAAGAGATA 58.851 45.833 0.00 0.00 0.00 1.98
826 837 3.375699 GTGATGGGGTTAGGAGAAGAGA 58.624 50.000 0.00 0.00 0.00 3.10
849 866 3.211045 AGTTGGTTAGTTTGCACGTGAT 58.789 40.909 22.23 1.16 0.00 3.06
1026 1044 1.906824 ACGGGAGTCGAAGAAGCCA 60.907 57.895 0.00 0.00 40.62 4.75
1283 1301 0.600255 AACAAGAACACCGAGCGGAG 60.600 55.000 16.83 10.53 38.96 4.63
1322 1340 1.843206 GCCATTTTCTCTCTCCCCTCT 59.157 52.381 0.00 0.00 0.00 3.69
1323 1341 1.561542 TGCCATTTTCTCTCTCCCCTC 59.438 52.381 0.00 0.00 0.00 4.30
1326 1344 3.574354 AGATGCCATTTTCTCTCTCCC 57.426 47.619 0.00 0.00 0.00 4.30
1335 1357 2.821969 AGAGCGTCAAAGATGCCATTTT 59.178 40.909 7.54 0.00 44.75 1.82
1448 1470 4.597079 CTGCAAAACAGTACGAACATGTT 58.403 39.130 11.78 11.78 41.86 2.71
1651 1673 1.525077 GTGTTTCCACCTGCACCGA 60.525 57.895 0.00 0.00 35.44 4.69
1652 1674 1.525995 AGTGTTTCCACCTGCACCG 60.526 57.895 0.00 0.00 42.88 4.94
1680 1702 0.588252 CTTTTCTCACTGCCACCACG 59.412 55.000 0.00 0.00 0.00 4.94
1853 1875 2.917897 GCCCACCACTCCCATGGAA 61.918 63.158 15.22 0.00 43.02 3.53
1866 1888 4.489771 CCTCATCCCCGTGCCCAC 62.490 72.222 0.00 0.00 0.00 4.61
2002 2030 0.952984 GTGTCTCTCCAAGGCAGCAC 60.953 60.000 0.00 0.00 41.23 4.40
2050 2081 0.179225 CGTGTTAACAGCATCACCGC 60.179 55.000 8.98 0.00 0.00 5.68
2070 2101 4.695928 AGTACCCGAAGCTTTCTTTTGATC 59.304 41.667 0.00 0.00 31.48 2.92
2132 2163 7.166167 GGGAGAATAACTCACCAGACTTTTTA 58.834 38.462 0.00 0.00 46.54 1.52
2175 2206 5.588648 CCTAAATTCAAATTGCCCGACTCTA 59.411 40.000 0.00 0.00 0.00 2.43
2206 2237 4.551671 TCCACCAATTCAGGGAAGAAAAA 58.448 39.130 0.00 0.00 0.00 1.94
2437 2468 7.946655 TGACTCAACACTTAAATAGTCACTG 57.053 36.000 0.00 0.00 38.64 3.66
2494 2525 6.090898 GCATGTCGTAATATTTAGGTAGCCAG 59.909 42.308 0.00 0.00 0.00 4.85
2528 2559 4.083802 GCTCAAGACATCCAATATTACGGC 60.084 45.833 0.00 0.00 0.00 5.68
2550 2581 2.426522 TCAGTTGGCAGTCTAACATGC 58.573 47.619 0.00 0.00 41.80 4.06
2776 2812 9.754382 GACGACTCTCTTAGGTATATAGGATAG 57.246 40.741 0.00 0.00 0.00 2.08
2800 2836 8.044908 TGTTGAGATAAATAAGTTAGTGGGGAC 58.955 37.037 0.00 0.00 0.00 4.46
2836 2872 5.047566 TCATAATTGTATGGTGAGGTGGG 57.952 43.478 0.00 0.00 38.15 4.61
2859 2895 1.226262 GAGGCGGGCTTTATCCCAA 59.774 57.895 5.24 0.00 46.92 4.12
2904 2940 0.749649 TGGTTGAATGTTGTGGTGGC 59.250 50.000 0.00 0.00 0.00 5.01
3071 3108 1.078426 GGATACCCTGCGTGTTGCT 60.078 57.895 0.00 0.00 46.63 3.91
3212 3249 8.897872 ATATGTTCCAACTAATTAGGTAACCG 57.102 34.615 16.73 0.00 37.17 4.44
3333 3370 8.462016 GCTGGTTTTTGTTCAATCTCTACATAT 58.538 33.333 0.00 0.00 0.00 1.78
3438 3475 3.441496 AAAGCACATGTCAGTTGTTGG 57.559 42.857 0.00 0.00 0.00 3.77
3537 3574 2.522836 AGATGCAGGAAGATACAGCG 57.477 50.000 0.00 0.00 0.00 5.18
3647 3684 6.426646 ACTTATACAGGATGGAGGAATCAC 57.573 41.667 0.00 0.00 43.62 3.06
3730 3767 4.245660 TGAGATCCTAAACGTTCTGCAAG 58.754 43.478 0.00 0.00 0.00 4.01
3739 3776 5.814314 CGAAGCTAATGAGATCCTAAACG 57.186 43.478 0.00 0.00 0.00 3.60
3758 3795 5.593679 AGAGGCTATAACAGTAAAGCGAA 57.406 39.130 0.00 0.00 35.79 4.70
3839 3876 9.892130 ATAGACCTGTTATCTAAGGTTTTCTTG 57.108 33.333 0.00 0.00 46.97 3.02
3992 4037 8.394877 CAAAAGAAAAGGTTGGGAATTGTTTAC 58.605 33.333 0.00 0.00 0.00 2.01
4004 4049 4.382754 GCGACATAGCAAAAGAAAAGGTTG 59.617 41.667 0.00 0.00 37.05 3.77
4005 4050 4.037446 TGCGACATAGCAAAAGAAAAGGTT 59.963 37.500 0.00 0.00 45.06 3.50
4046 4091 9.904198 TCACAGAAAGACATTTCATATGGATAA 57.096 29.630 2.13 0.00 46.10 1.75
4069 4121 8.430801 AGACTTGTAATCTGCAAAGATATCAC 57.569 34.615 5.32 0.00 0.00 3.06
4245 4297 6.038825 CCAAAAGTTTTGGTATTTTCCCAACC 59.961 38.462 31.21 0.00 41.55 3.77
4324 4376 1.108776 ATGCATGGCAATCAGGACAC 58.891 50.000 0.00 0.00 43.62 3.67
4354 4406 8.480501 ACACTAAAAACTACAGTTGAGTCCTTA 58.519 33.333 0.00 0.00 38.44 2.69
4375 4428 5.070001 GGGGAAATAGCATGCATAACACTA 58.930 41.667 21.98 1.26 0.00 2.74
4488 4541 7.823799 CCTGGTGCAAAATAACCTTTGATTAAT 59.176 33.333 0.00 0.00 38.35 1.40
4502 4555 0.901580 CTGGCTCCCTGGTGCAAAAT 60.902 55.000 11.90 0.00 36.47 1.82
4530 4583 6.388619 ACTGTTACTTGTCCCAATAAGGAT 57.611 37.500 0.00 0.00 41.22 3.24
4538 4591 7.069085 GGATAGTATGTACTGTTACTTGTCCCA 59.931 40.741 3.00 0.00 37.10 4.37
4610 4663 7.707624 TTCTGAATCAAACAGCAAATAGGAT 57.292 32.000 0.00 0.00 35.61 3.24
4647 4701 5.695851 ATGCAGTTTTATGCTAGCATACC 57.304 39.130 32.19 22.85 46.63 2.73
4749 4804 6.258727 CCACAGATAAGTAGCCACAGTATTTG 59.741 42.308 0.00 0.00 0.00 2.32
4848 4904 2.303022 CCTATGGTGTCACTGACTGGTT 59.697 50.000 10.54 0.00 33.15 3.67
4883 4942 5.768164 TGGAGAAGGGTTCAAAATTCTGTAC 59.232 40.000 0.00 0.00 32.31 2.90
4903 4962 2.112691 AGGATATACAGGGGGAGTGGAG 59.887 54.545 0.00 0.00 0.00 3.86
4917 4976 5.914716 ACAAATACCCAAGTCCCAGGATATA 59.085 40.000 0.00 0.00 0.00 0.86
5074 5133 2.805671 CAAACACAGGTCTGCGTATTCA 59.194 45.455 0.00 0.00 0.00 2.57
5094 5153 9.695526 CAGAAACAGAAAACCAATTATTCATCA 57.304 29.630 0.00 0.00 0.00 3.07
5193 5252 4.910195 AGCTATTGTTCCAGTGTCAATGA 58.090 39.130 0.89 0.00 34.35 2.57
5210 5269 8.718656 ACAATCTCTGGGTATAAAGAAAGCTAT 58.281 33.333 0.00 0.00 0.00 2.97
5218 5277 5.586243 CCACACACAATCTCTGGGTATAAAG 59.414 44.000 0.00 0.00 40.85 1.85
5221 5280 4.101114 ACCACACACAATCTCTGGGTATA 58.899 43.478 0.00 0.00 40.85 1.47
5246 5305 7.662258 CAGAGTATAAGAAAGATACCGGAGAGA 59.338 40.741 9.46 0.00 31.27 3.10
5313 6374 1.210478 AGCAAATCGGACAGCTGGTAT 59.790 47.619 19.93 2.57 35.72 2.73
5372 6436 4.618920 TGGTAGTTCAGGGTCTTTTCTC 57.381 45.455 0.00 0.00 0.00 2.87
5373 6437 4.351111 ACATGGTAGTTCAGGGTCTTTTCT 59.649 41.667 0.00 0.00 0.00 2.52
5374 6438 4.652822 ACATGGTAGTTCAGGGTCTTTTC 58.347 43.478 0.00 0.00 0.00 2.29
5375 6439 4.724279 ACATGGTAGTTCAGGGTCTTTT 57.276 40.909 0.00 0.00 0.00 2.27
5376 6440 4.724279 AACATGGTAGTTCAGGGTCTTT 57.276 40.909 0.00 0.00 0.00 2.52
5377 6441 4.724279 AAACATGGTAGTTCAGGGTCTT 57.276 40.909 0.00 0.00 0.00 3.01
5378 6442 4.724279 AAAACATGGTAGTTCAGGGTCT 57.276 40.909 0.00 0.00 0.00 3.85
5579 6644 1.394266 AAAGCACAAGCCCCACACTG 61.394 55.000 0.00 0.00 43.56 3.66
5643 6708 6.679327 ACAAGTGAAGTTCTTAGACAAACC 57.321 37.500 4.17 0.00 0.00 3.27
5777 6842 3.237628 CCATACGCAGTGTCGATCATAG 58.762 50.000 12.77 0.00 45.73 2.23
5786 6851 0.537188 CTTCCTCCCATACGCAGTGT 59.463 55.000 0.00 0.00 45.73 3.55
5953 7021 9.419297 GTCAACACAATTCATACACTAGAACTA 57.581 33.333 0.00 0.00 0.00 2.24
5954 7022 7.387948 GGTCAACACAATTCATACACTAGAACT 59.612 37.037 0.00 0.00 0.00 3.01
5955 7023 7.387948 AGGTCAACACAATTCATACACTAGAAC 59.612 37.037 0.00 0.00 0.00 3.01
6194 7262 4.866508 TCCTAGCTATGATGGTTAACCG 57.133 45.455 19.65 5.43 39.43 4.44
6198 7266 9.470399 TCGTATAAATCCTAGCTATGATGGTTA 57.530 33.333 11.71 8.42 0.00 2.85
6543 7616 1.900245 TTTCCTAACCCGCCTTTGTC 58.100 50.000 0.00 0.00 0.00 3.18
6554 7627 4.459337 ACCAAACAGCTAGCATTTCCTAAC 59.541 41.667 18.83 0.00 0.00 2.34
6589 7662 0.100503 AACTTCACGGCAAGCAACAC 59.899 50.000 0.00 0.00 0.00 3.32
6716 7789 9.923143 TCCCGTCATAATATTACATTTCACTAG 57.077 33.333 0.00 0.00 0.00 2.57
6739 7812 2.338577 ATTACAGAGTGCAGCATCCC 57.661 50.000 0.00 0.00 0.00 3.85
6813 7887 6.207614 TCCGGAATCAAACATAACACATCAAA 59.792 34.615 0.00 0.00 0.00 2.69
6819 7893 6.009115 AGTTTCCGGAATCAAACATAACAC 57.991 37.500 23.75 12.42 35.33 3.32
6849 7923 5.770162 AGACAAAATTAGGTCCAGTTTGAGG 59.230 40.000 8.61 0.00 34.58 3.86
6895 7969 5.973651 TTATTGCGCATTCAACACAAAAA 57.026 30.435 12.75 0.00 0.00 1.94
6896 7970 5.291858 TGTTTATTGCGCATTCAACACAAAA 59.708 32.000 21.67 8.42 0.00 2.44
7007 8082 6.749118 GGACTGATCAATAAAGCAAATGACAC 59.251 38.462 0.00 0.00 0.00 3.67
7063 8139 7.798052 GTGGTTTTATGTGTTTGCATTTCAATC 59.202 33.333 0.00 0.00 34.12 2.67
7167 8253 9.645128 TTGTAATGTTGGATTTGATGATCCTAT 57.355 29.630 5.59 0.00 44.85 2.57
7249 8335 5.564550 ACAAGCTCCTCACATAACTGAATT 58.435 37.500 0.00 0.00 0.00 2.17
7267 8353 1.556911 TGGGGATCTTCAGAGACAAGC 59.443 52.381 0.00 0.00 33.99 4.01
7295 8381 1.077429 GGTGATCAGGGGCAGGAAC 60.077 63.158 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.