Multiple sequence alignment - TraesCS4B01G101400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G101400 chr4B 100.000 6921 0 0 1 6921 106977973 106971053 0.000000e+00 12781.0
1 TraesCS4B01G101400 chr4B 93.271 862 39 12 1 843 106985451 106984590 0.000000e+00 1253.0
2 TraesCS4B01G101400 chr4B 93.279 863 32 13 1 841 106981703 106980845 0.000000e+00 1249.0
3 TraesCS4B01G101400 chr4B 95.218 481 21 2 3375 3854 106974551 106974072 0.000000e+00 760.0
4 TraesCS4B01G101400 chr4B 95.218 481 21 2 3423 3902 106974599 106974120 0.000000e+00 760.0
5 TraesCS4B01G101400 chr4B 93.088 434 26 4 3375 3806 106974503 106974072 3.520000e-177 632.0
6 TraesCS4B01G101400 chr4B 93.088 434 26 4 3471 3902 106974599 106974168 3.520000e-177 632.0
7 TraesCS4B01G101400 chr4B 87.308 260 17 7 956 1203 267696504 267696759 4.090000e-72 283.0
8 TraesCS4B01G101400 chr4B 91.096 146 9 4 3375 3518 106974215 106974072 1.970000e-45 195.0
9 TraesCS4B01G101400 chr4A 95.167 2959 105 12 3519 6446 513085054 513088005 0.000000e+00 4638.0
10 TraesCS4B01G101400 chr4A 95.881 1651 59 3 2115 3757 513083787 513085436 0.000000e+00 2663.0
11 TraesCS4B01G101400 chr4A 89.935 1381 65 34 580 1914 513082377 513083729 0.000000e+00 1712.0
12 TraesCS4B01G101400 chr4A 93.725 494 23 6 6434 6921 513088612 513089103 0.000000e+00 734.0
13 TraesCS4B01G101400 chr4A 87.970 266 16 7 956 1209 676926349 676926610 4.060000e-77 300.0
14 TraesCS4B01G101400 chr4A 89.041 146 12 4 3759 3902 513085054 513085197 1.980000e-40 178.0
15 TraesCS4B01G101400 chr4A 97.802 91 2 0 2029 2119 556767952 556768042 2.580000e-34 158.0
16 TraesCS4B01G101400 chr4A 91.262 103 5 2 1795 1894 676927158 676927259 3.370000e-28 137.0
17 TraesCS4B01G101400 chr4A 98.667 75 1 0 1 75 513081012 513081086 4.360000e-27 134.0
18 TraesCS4B01G101400 chr4A 97.368 76 2 0 1958 2033 513083713 513083788 5.630000e-26 130.0
19 TraesCS4B01G101400 chr4A 94.340 53 3 0 523 575 513082334 513082386 1.600000e-11 82.4
20 TraesCS4B01G101400 chr4A 86.275 51 5 2 1687 1736 676927136 676927185 3.000000e-03 54.7
21 TraesCS4B01G101400 chr4D 95.814 2556 70 9 3423 5971 74610855 74608330 0.000000e+00 4093.0
22 TraesCS4B01G101400 chr4D 95.615 1756 58 8 2115 3854 74612131 74610379 0.000000e+00 2798.0
23 TraesCS4B01G101400 chr4D 90.308 1527 83 30 411 1913 74613675 74612190 0.000000e+00 1940.0
24 TraesCS4B01G101400 chr4D 94.688 433 18 3 3375 3806 74610807 74610379 0.000000e+00 667.0
25 TraesCS4B01G101400 chr4D 91.561 474 19 4 6465 6921 74607148 74606679 9.790000e-178 634.0
26 TraesCS4B01G101400 chr4D 92.396 434 26 5 3471 3902 74610855 74610427 4.590000e-171 612.0
27 TraesCS4B01G101400 chr4D 94.286 385 17 3 3375 3758 74610759 74610379 1.000000e-162 584.0
28 TraesCS4B01G101400 chr4D 88.208 424 40 6 6030 6446 74608297 74607877 1.340000e-136 497.0
29 TraesCS4B01G101400 chr4D 90.036 281 21 4 1303 1583 76231326 76231053 2.370000e-94 357.0
30 TraesCS4B01G101400 chr4D 84.112 214 16 8 1014 1209 225245039 225245252 2.550000e-44 191.0
31 TraesCS4B01G101400 chr4D 82.468 154 11 6 1076 1213 159758871 159758718 3.390000e-23 121.0
32 TraesCS4B01G101400 chr4D 96.610 59 1 1 1795 1853 506594881 506594938 5.710000e-16 97.1
33 TraesCS4B01G101400 chr7D 91.608 286 17 4 1298 1583 572475443 572475721 8.420000e-104 388.0
34 TraesCS4B01G101400 chr7D 91.367 278 16 5 1300 1577 54880853 54881122 2.360000e-99 374.0
35 TraesCS4B01G101400 chr7D 91.007 278 17 5 1300 1577 54865438 54865707 1.100000e-97 368.0
36 TraesCS4B01G101400 chr7D 85.514 214 13 7 1014 1209 79618556 79618769 2.530000e-49 207.0
37 TraesCS4B01G101400 chr7D 86.275 51 5 2 1687 1736 572475779 572475828 3.000000e-03 54.7
38 TraesCS4B01G101400 chr6D 90.559 286 19 6 1298 1583 61990208 61990485 8.480000e-99 372.0
39 TraesCS4B01G101400 chr6D 89.161 286 24 4 1298 1583 372423617 372423339 3.970000e-92 350.0
40 TraesCS4B01G101400 chr6D 98.889 90 1 0 2030 2119 78083077 78083166 2.000000e-35 161.0
41 TraesCS4B01G101400 chr6D 92.233 103 4 2 1795 1894 372423259 372423158 7.240000e-30 143.0
42 TraesCS4B01G101400 chr6D 98.305 59 0 1 1795 1853 61990565 61990622 1.230000e-17 102.0
43 TraesCS4B01G101400 chr6D 93.548 62 3 1 1896 1957 113507416 113507356 2.660000e-14 91.6
44 TraesCS4B01G101400 chr6D 91.176 68 2 4 1891 1957 58243825 58243889 9.560000e-14 89.8
45 TraesCS4B01G101400 chr6D 86.275 51 5 2 1687 1736 61990543 61990592 3.000000e-03 54.7
46 TraesCS4B01G101400 chr2A 90.559 286 20 4 1298 1583 59582845 59583123 8.480000e-99 372.0
47 TraesCS4B01G101400 chr2A 93.458 107 6 1 2029 2134 712971382 712971488 2.580000e-34 158.0
48 TraesCS4B01G101400 chr2A 91.262 103 5 2 1795 1894 59583203 59583304 3.370000e-28 137.0
49 TraesCS4B01G101400 chr5D 90.391 281 19 5 1303 1583 556478512 556478240 5.100000e-96 363.0
50 TraesCS4B01G101400 chr5D 89.860 286 21 5 1298 1583 360128781 360129058 1.840000e-95 361.0
51 TraesCS4B01G101400 chr5D 85.135 148 12 7 1750 1894 360129099 360129239 7.240000e-30 143.0
52 TraesCS4B01G101400 chr3D 90.110 273 20 4 1298 1570 577479159 577478894 1.430000e-91 348.0
53 TraesCS4B01G101400 chr3D 89.568 278 21 5 1300 1577 83648285 83648554 5.140000e-91 346.0
54 TraesCS4B01G101400 chr3D 95.918 98 4 0 2032 2129 54370497 54370400 7.190000e-35 159.0
55 TraesCS4B01G101400 chr3D 95.833 96 4 0 2032 2127 570848668 570848763 9.290000e-34 156.0
56 TraesCS4B01G101400 chr3D 91.262 103 5 2 1795 1894 96221487 96221588 3.370000e-28 137.0
57 TraesCS4B01G101400 chr1B 88.652 282 24 5 1303 1583 626166616 626166342 3.090000e-88 337.0
58 TraesCS4B01G101400 chr2B 88.934 244 12 7 956 1188 670845757 670845996 3.160000e-73 287.0
59 TraesCS4B01G101400 chr2B 92.233 103 4 2 1795 1894 670848084 670848185 7.240000e-30 143.0
60 TraesCS4B01G101400 chr2B 92.233 103 4 2 1795 1894 801167423 801167322 7.240000e-30 143.0
61 TraesCS4B01G101400 chr1A 90.566 159 11 2 1323 1481 49128947 49128793 2.530000e-49 207.0
62 TraesCS4B01G101400 chr1A 89.937 159 12 2 1323 1481 364162596 364162750 1.180000e-47 202.0
63 TraesCS4B01G101400 chr1A 88.679 159 15 1 1323 1481 532666895 532666740 2.550000e-44 191.0
64 TraesCS4B01G101400 chr1A 92.233 103 4 2 1795 1894 520173505 520173404 7.240000e-30 143.0
65 TraesCS4B01G101400 chr2D 81.985 272 16 12 956 1209 240629955 240629699 4.230000e-47 200.0
66 TraesCS4B01G101400 chr2D 90.351 114 7 3 2030 2139 201441567 201441680 5.590000e-31 147.0
67 TraesCS4B01G101400 chr2D 98.305 59 0 1 1795 1853 418779507 418779564 1.230000e-17 102.0
68 TraesCS4B01G101400 chr2D 86.275 51 5 2 1687 1736 418779485 418779534 3.000000e-03 54.7
69 TraesCS4B01G101400 chr2D 86.275 51 5 2 1687 1736 633448474 633448523 3.000000e-03 54.7
70 TraesCS4B01G101400 chr1D 81.250 272 18 13 956 1209 382482945 382483201 9.160000e-44 189.0
71 TraesCS4B01G101400 chr1D 98.305 59 0 1 1795 1853 104862221 104862278 1.230000e-17 102.0
72 TraesCS4B01G101400 chr1D 96.610 59 1 1 1795 1853 473353721 473353778 5.710000e-16 97.1
73 TraesCS4B01G101400 chr1D 86.275 51 5 2 1687 1736 104862199 104862248 3.000000e-03 54.7
74 TraesCS4B01G101400 chr5A 83.744 203 16 8 1014 1209 605993664 605993472 7.130000e-40 176.0
75 TraesCS4B01G101400 chr5A 84.409 186 15 6 1017 1188 56887235 56887050 3.320000e-38 171.0
76 TraesCS4B01G101400 chr5A 93.204 103 3 2 1795 1894 683119788 683119687 1.560000e-31 148.0
77 TraesCS4B01G101400 chr5A 94.915 59 3 0 1899 1957 457524017 457524075 7.390000e-15 93.5
78 TraesCS4B01G101400 chrUn 96.809 94 3 0 2030 2123 104668894 104668801 2.580000e-34 158.0
79 TraesCS4B01G101400 chr6A 95.876 97 3 1 2032 2127 27782785 27782689 9.290000e-34 156.0
80 TraesCS4B01G101400 chr6A 91.176 68 2 4 1892 1957 540045294 540045359 9.560000e-14 89.8
81 TraesCS4B01G101400 chr7B 90.351 114 7 4 2019 2128 228390950 228390837 5.590000e-31 147.0
82 TraesCS4B01G101400 chr3B 83.704 135 18 3 2032 2163 654335635 654335502 2.620000e-24 124.0
83 TraesCS4B01G101400 chr3B 95.000 60 2 1 1899 1957 344986207 344986266 7.390000e-15 93.5
84 TraesCS4B01G101400 chr3B 94.915 59 2 1 1899 1957 688389307 688389250 2.660000e-14 91.6
85 TraesCS4B01G101400 chr7A 96.491 57 2 0 1901 1957 265441257 265441201 2.060000e-15 95.3
86 TraesCS4B01G101400 chr7A 95.000 60 2 1 1899 1957 172820737 172820796 7.390000e-15 93.5
87 TraesCS4B01G101400 chr7A 93.548 62 3 1 1896 1957 91512728 91512788 2.660000e-14 91.6
88 TraesCS4B01G101400 chr7A 86.275 51 5 2 1687 1736 46039307 46039356 3.000000e-03 54.7
89 TraesCS4B01G101400 chr3A 85.000 60 8 1 5455 5514 588945703 588945645 7.500000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G101400 chr4B 106971053 106977973 6920 True 2626.666667 12781 94.6180 1 6921 6 chr4B.!!$R1 6920
1 TraesCS4B01G101400 chr4B 106980845 106985451 4606 True 1251.000000 1253 93.2750 1 843 2 chr4B.!!$R2 842
2 TraesCS4B01G101400 chr4A 513081012 513089103 8091 False 1283.925000 4638 94.2655 1 6921 8 chr4A.!!$F2 6920
3 TraesCS4B01G101400 chr4D 74606679 74613675 6996 True 1478.125000 4093 92.8595 411 6921 8 chr4D.!!$R3 6510
4 TraesCS4B01G101400 chr2B 670845757 670848185 2428 False 215.000000 287 90.5835 956 1894 2 chr2B.!!$F1 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 149 0.736325 CGTCCACTCCACCGAATGAC 60.736 60.000 0.00 0.00 0.00 3.06 F
144 155 1.135083 ACTCCACCGAATGACGACATC 60.135 52.381 0.00 0.00 45.77 3.06 F
286 297 1.257055 ATTCCATGTTGTTGGGGGCG 61.257 55.000 0.00 0.00 37.37 6.13 F
1341 3186 1.464608 CTGATGTTGTTAGTGTGCCCG 59.535 52.381 0.00 0.00 0.00 6.13 F
1958 5732 0.036306 AACAAGTTGGGGTAGGCTCG 59.964 55.000 7.96 0.00 0.00 5.03 F
1960 5734 0.036306 CAAGTTGGGGTAGGCTCGTT 59.964 55.000 0.00 0.00 0.00 3.85 F
3664 8248 0.110056 GCATTGCACAAGTCCTCGTG 60.110 55.000 3.15 0.00 36.18 4.35 F
3747 8331 0.037139 TGCAAATGACTGGGCATTGC 60.037 50.000 2.15 0.00 38.42 3.56 F
3748 8332 0.037139 GCAAATGACTGGGCATTGCA 60.037 50.000 11.39 0.00 38.42 4.08 F
3753 8337 0.111061 TGACTGGGCATTGCAGAAGT 59.889 50.000 11.39 10.08 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 5713 0.036306 CGAGCCTACCCCAACTTGTT 59.964 55.000 0.00 0.0 0.00 2.83 R
1941 5715 0.036306 AACGAGCCTACCCCAACTTG 59.964 55.000 0.00 0.0 0.00 3.16 R
1948 5722 0.248289 TGCTGTAAACGAGCCTACCC 59.752 55.000 0.00 0.0 35.43 3.69 R
3287 7778 0.038892 TGTCCACGTTAAGGCTCGTC 60.039 55.000 0.00 0.0 38.23 4.20 R
3650 8234 0.034337 TAACCCACGAGGACTTGTGC 59.966 55.000 13.13 0.0 42.30 4.57 R
3728 8312 0.037139 GCAATGCCCAGTCATTTGCA 60.037 50.000 0.00 0.0 34.68 4.08 R
4963 9881 0.237498 GCTAGCCAACCAAACGACAC 59.763 55.000 2.29 0.0 0.00 3.67 R
5432 10351 1.136305 GGCGCTATTCACTCAGTGGTA 59.864 52.381 7.64 0.0 33.87 3.25 R
5564 10483 7.571244 GCAATGATCAAATACACAGGTATACGG 60.571 40.741 0.00 0.0 39.28 4.02 R
5975 10894 0.539051 GCAGCCTTCTAGAGCTCCAA 59.461 55.000 10.93 0.0 37.18 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.631072 CGAAGTTGGTAGCGCATCG 59.369 57.895 11.47 2.37 0.00 3.84
100 101 1.202510 GCATCGCTGGACAGAGAAGAT 60.203 52.381 9.72 2.83 40.50 2.40
138 149 0.736325 CGTCCACTCCACCGAATGAC 60.736 60.000 0.00 0.00 0.00 3.06
144 155 1.135083 ACTCCACCGAATGACGACATC 60.135 52.381 0.00 0.00 45.77 3.06
220 231 2.617274 GCTTCACACGCCTTCCACC 61.617 63.158 0.00 0.00 0.00 4.61
255 266 7.240405 TCAATATCCCCTGAATGACCATAGAAT 59.760 37.037 0.00 0.00 0.00 2.40
273 284 7.831193 CCATAGAATCGGGAGAAATTATTCCAT 59.169 37.037 9.61 0.00 45.37 3.41
284 295 5.189539 AGAAATTATTCCATGTTGTTGGGGG 59.810 40.000 0.00 0.00 37.37 5.40
286 297 1.257055 ATTCCATGTTGTTGGGGGCG 61.257 55.000 0.00 0.00 37.37 6.13
291 302 4.114997 GTTGTTGGGGGCGCATCG 62.115 66.667 10.83 0.00 0.00 3.84
329 340 5.337491 GGCCAGATGTTTCAACCATTGTTAT 60.337 40.000 0.00 0.00 32.09 1.89
335 346 6.471233 TGTTTCAACCATTGTTATCACCAA 57.529 33.333 0.00 0.00 32.09 3.67
391 402 4.655649 AGTCCATCACATTCATAGCTACCA 59.344 41.667 0.00 0.00 0.00 3.25
392 403 5.130975 AGTCCATCACATTCATAGCTACCAA 59.869 40.000 0.00 0.00 0.00 3.67
552 1637 5.291971 GTGACAAAGGAACATGAATGCTTT 58.708 37.500 13.76 13.76 0.00 3.51
815 1916 2.185004 ATGACTTTTGACCACTCGGG 57.815 50.000 0.00 0.00 44.81 5.14
910 2011 2.888863 CCTCACTCCTCGCTCCAC 59.111 66.667 0.00 0.00 0.00 4.02
935 2036 6.103997 TGGTAACTGAAGCTTATAAACCTCG 58.896 40.000 0.00 0.00 37.61 4.63
938 2039 3.197983 ACTGAAGCTTATAAACCTCGCCT 59.802 43.478 0.00 0.00 0.00 5.52
939 2040 4.404715 ACTGAAGCTTATAAACCTCGCCTA 59.595 41.667 0.00 0.00 0.00 3.93
976 2081 2.245287 AGAGTAGAGGGGTTAGGTGAGG 59.755 54.545 0.00 0.00 0.00 3.86
1261 3102 3.938334 GGTGAGCTCTTCTTGAAATCCTC 59.062 47.826 16.19 0.00 0.00 3.71
1266 3107 6.127338 TGAGCTCTTCTTGAAATCCTCGATTA 60.127 38.462 16.19 0.00 31.46 1.75
1341 3186 1.464608 CTGATGTTGTTAGTGTGCCCG 59.535 52.381 0.00 0.00 0.00 6.13
1360 3205 4.446385 GCCCGTTTTTGGTAAATTTCAGAC 59.554 41.667 0.00 0.00 0.00 3.51
1404 3249 9.030452 ACAGAGAGTTGTATCTGATCTAAAAGT 57.970 33.333 9.06 0.00 43.63 2.66
1428 3273 8.755028 AGTGGTGTGTTTTCCTTTTATAGTTTT 58.245 29.630 0.00 0.00 0.00 2.43
1477 3322 5.161943 AGGTGGACTGGATGTTTACTTAC 57.838 43.478 0.00 0.00 0.00 2.34
1481 3326 6.295462 GGTGGACTGGATGTTTACTTACTGTA 60.295 42.308 0.00 0.00 0.00 2.74
1482 3327 6.812160 GTGGACTGGATGTTTACTTACTGTAG 59.188 42.308 0.00 0.00 32.08 2.74
1552 3397 3.509442 TCTGCTTTTGGATGTGGGAATT 58.491 40.909 0.00 0.00 0.00 2.17
1553 3398 3.511146 TCTGCTTTTGGATGTGGGAATTC 59.489 43.478 0.00 0.00 0.00 2.17
1658 5348 7.821359 GGATGCTATTCTGCTATCAACATTAGA 59.179 37.037 0.00 0.00 0.00 2.10
1679 5450 9.710900 ATTAGAATTTCTTTTGTCAATGTTCCC 57.289 29.630 3.86 0.00 0.00 3.97
1901 5675 3.317603 AATTGCTGCCTTAATGCGTTT 57.682 38.095 0.00 0.00 0.00 3.60
1902 5676 4.448537 AATTGCTGCCTTAATGCGTTTA 57.551 36.364 0.00 0.00 0.00 2.01
1903 5677 2.911819 TGCTGCCTTAATGCGTTTAC 57.088 45.000 0.00 0.00 0.00 2.01
1904 5678 2.155279 TGCTGCCTTAATGCGTTTACA 58.845 42.857 0.00 0.00 0.00 2.41
1905 5679 2.161410 TGCTGCCTTAATGCGTTTACAG 59.839 45.455 0.00 1.29 0.00 2.74
1906 5680 2.785679 CTGCCTTAATGCGTTTACAGC 58.214 47.619 0.00 0.00 0.00 4.40
1907 5681 5.507364 GCTGCCTTAATGCGTTTACAGCA 62.507 47.826 20.68 13.83 46.45 4.41
1915 5689 3.699779 TGCGTTTACAGCATCAACAAA 57.300 38.095 0.00 0.00 40.01 2.83
1916 5690 3.367607 TGCGTTTACAGCATCAACAAAC 58.632 40.909 0.00 0.00 40.01 2.93
1917 5691 3.181496 TGCGTTTACAGCATCAACAAACA 60.181 39.130 0.00 0.00 40.01 2.83
1918 5692 3.794028 GCGTTTACAGCATCAACAAACAA 59.206 39.130 0.00 0.00 34.19 2.83
1919 5693 4.317069 GCGTTTACAGCATCAACAAACAAC 60.317 41.667 0.00 0.00 34.19 3.32
1920 5694 4.795795 CGTTTACAGCATCAACAAACAACA 59.204 37.500 0.00 0.00 0.00 3.33
1921 5695 5.287274 CGTTTACAGCATCAACAAACAACAA 59.713 36.000 0.00 0.00 0.00 2.83
1922 5696 6.465978 GTTTACAGCATCAACAAACAACAAC 58.534 36.000 0.00 0.00 0.00 3.32
1923 5697 4.185467 ACAGCATCAACAAACAACAACA 57.815 36.364 0.00 0.00 0.00 3.33
1924 5698 4.564041 ACAGCATCAACAAACAACAACAA 58.436 34.783 0.00 0.00 0.00 2.83
1925 5699 4.993584 ACAGCATCAACAAACAACAACAAA 59.006 33.333 0.00 0.00 0.00 2.83
1926 5700 5.120519 ACAGCATCAACAAACAACAACAAAG 59.879 36.000 0.00 0.00 0.00 2.77
1927 5701 4.093261 AGCATCAACAAACAACAACAAAGC 59.907 37.500 0.00 0.00 0.00 3.51
1928 5702 4.727448 GCATCAACAAACAACAACAAAGCC 60.727 41.667 0.00 0.00 0.00 4.35
1929 5703 4.264460 TCAACAAACAACAACAAAGCCT 57.736 36.364 0.00 0.00 0.00 4.58
1930 5704 4.636249 TCAACAAACAACAACAAAGCCTT 58.364 34.783 0.00 0.00 0.00 4.35
1931 5705 5.059833 TCAACAAACAACAACAAAGCCTTT 58.940 33.333 0.00 0.00 0.00 3.11
1932 5706 6.223852 TCAACAAACAACAACAAAGCCTTTA 58.776 32.000 0.00 0.00 0.00 1.85
1933 5707 6.367422 TCAACAAACAACAACAAAGCCTTTAG 59.633 34.615 0.00 0.00 0.00 1.85
1934 5708 5.789521 ACAAACAACAACAAAGCCTTTAGT 58.210 33.333 0.00 0.00 0.00 2.24
1935 5709 5.867174 ACAAACAACAACAAAGCCTTTAGTC 59.133 36.000 0.00 0.00 0.00 2.59
1936 5710 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
1937 5711 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
1938 5712 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
1939 5713 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
1940 5714 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
1941 5715 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
1942 5716 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
1943 5717 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
1944 5718 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
1945 5719 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
1946 5720 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
1947 5721 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
1956 5730 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
1957 5731 1.886542 CAAACAAGTTGGGGTAGGCTC 59.113 52.381 7.96 0.00 33.18 4.70
1958 5732 0.036306 AACAAGTTGGGGTAGGCTCG 59.964 55.000 7.96 0.00 0.00 5.03
1959 5733 1.125711 ACAAGTTGGGGTAGGCTCGT 61.126 55.000 7.96 0.00 0.00 4.18
1960 5734 0.036306 CAAGTTGGGGTAGGCTCGTT 59.964 55.000 0.00 0.00 0.00 3.85
2042 5816 3.709567 GGCAACTACTCCCTCCGT 58.290 61.111 0.00 0.00 0.00 4.69
2043 5817 1.516423 GGCAACTACTCCCTCCGTC 59.484 63.158 0.00 0.00 0.00 4.79
2044 5818 1.516423 GCAACTACTCCCTCCGTCC 59.484 63.158 0.00 0.00 0.00 4.79
2045 5819 1.957765 GCAACTACTCCCTCCGTCCC 61.958 65.000 0.00 0.00 0.00 4.46
2046 5820 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
2048 5822 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2050 5824 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2051 5825 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2052 5826 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2053 5827 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2054 5828 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2055 5829 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2056 5830 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2057 5831 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2058 5832 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2059 5833 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2060 5834 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2061 5835 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2062 5836 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2063 5837 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2064 5838 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2091 5865 6.787085 ACTAGTGTAGTGTCAAAAATGCTC 57.213 37.500 0.00 0.00 37.69 4.26
2092 5866 6.525629 ACTAGTGTAGTGTCAAAAATGCTCT 58.474 36.000 0.00 0.00 37.69 4.09
2093 5867 6.992715 ACTAGTGTAGTGTCAAAAATGCTCTT 59.007 34.615 0.00 0.00 37.69 2.85
2094 5868 8.148351 ACTAGTGTAGTGTCAAAAATGCTCTTA 58.852 33.333 0.00 0.00 37.69 2.10
2095 5869 7.986085 AGTGTAGTGTCAAAAATGCTCTTAT 57.014 32.000 0.00 0.00 0.00 1.73
2097 5871 9.672673 AGTGTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 0.00 0.00 0.00 0.86
2103 5877 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
2104 5878 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
2105 5879 9.899226 GTCAAAAATGCTCTTATATTATGGGAC 57.101 33.333 0.00 0.00 0.00 4.46
2106 5880 8.783093 TCAAAAATGCTCTTATATTATGGGACG 58.217 33.333 0.00 0.00 0.00 4.79
2107 5881 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
2108 5882 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2109 5883 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
2110 5884 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2111 5885 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2112 5886 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2113 5887 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2222 6003 7.415206 TAAGAAGAGCTTGGTTTCTTGTGAAAC 60.415 37.037 18.65 11.77 46.20 2.78
2237 6019 3.310731 TGTGAAACCCCTTTAACCCCTTT 60.311 43.478 0.00 0.00 34.36 3.11
2239 6021 5.088730 GTGAAACCCCTTTAACCCCTTTAT 58.911 41.667 0.00 0.00 0.00 1.40
2268 6050 6.415573 AGTACCTTCCAATTGTCTATTCACC 58.584 40.000 4.43 0.00 0.00 4.02
2481 6270 0.445043 GCTTGGTTTAACGGTAGGCG 59.555 55.000 0.00 0.00 0.00 5.52
2548 6337 0.405198 TGTTGTCAGGTGCATGGGAT 59.595 50.000 0.00 0.00 0.00 3.85
2652 6442 1.348366 TGGCGTAGTACAATTGGGTGT 59.652 47.619 10.83 0.00 35.43 4.16
2830 6622 3.009033 TCATTCAACCAGTACCTTCAGGG 59.991 47.826 0.00 0.00 40.27 4.45
2875 6667 7.135369 CCCTAAAAGGTCAAAGTGGCAACAA 62.135 44.000 0.00 0.00 41.18 2.83
3287 7778 1.127213 GTTACATGTAACGTGGCACCG 59.873 52.381 27.96 9.88 36.47 4.94
3390 7929 7.288852 CCACTAGGAAGAGGATTAGAGAAATCA 59.711 40.741 0.00 0.00 40.84 2.57
3400 7939 8.529424 AGGATTAGAGAAATCAATGCAAATGA 57.471 30.769 7.88 7.88 45.05 2.57
3619 8203 1.407656 TTGCACAAGTCCTCGAGGGT 61.408 55.000 30.80 17.82 36.25 4.34
3620 8204 1.371558 GCACAAGTCCTCGAGGGTT 59.628 57.895 30.80 20.96 36.25 4.11
3621 8205 0.951040 GCACAAGTCCTCGAGGGTTG 60.951 60.000 30.63 30.63 36.34 3.77
3622 8206 0.320771 CACAAGTCCTCGAGGGTTGG 60.321 60.000 33.06 23.93 35.29 3.77
3623 8207 0.471211 ACAAGTCCTCGAGGGTTGGA 60.471 55.000 33.06 16.52 35.29 3.53
3624 8208 0.247736 CAAGTCCTCGAGGGTTGGAG 59.752 60.000 30.80 12.60 36.25 3.86
3625 8209 0.114560 AAGTCCTCGAGGGTTGGAGA 59.885 55.000 30.80 7.18 36.25 3.71
3626 8210 0.114560 AGTCCTCGAGGGTTGGAGAA 59.885 55.000 30.80 6.36 36.25 2.87
3627 8211 0.974383 GTCCTCGAGGGTTGGAGAAA 59.026 55.000 30.80 5.56 36.25 2.52
3628 8212 1.555533 GTCCTCGAGGGTTGGAGAAAT 59.444 52.381 30.80 0.00 36.25 2.17
3629 8213 1.831736 TCCTCGAGGGTTGGAGAAATC 59.168 52.381 30.80 0.00 36.25 2.17
3630 8214 1.471676 CCTCGAGGGTTGGAGAAATCG 60.472 57.143 24.62 0.00 31.39 3.34
3631 8215 1.476891 CTCGAGGGTTGGAGAAATCGA 59.523 52.381 3.91 0.00 37.58 3.59
3632 8216 2.101582 CTCGAGGGTTGGAGAAATCGAT 59.898 50.000 3.91 0.00 38.37 3.59
3633 8217 2.159099 TCGAGGGTTGGAGAAATCGATG 60.159 50.000 0.00 0.00 34.57 3.84
3634 8218 1.943340 GAGGGTTGGAGAAATCGATGC 59.057 52.381 0.00 0.00 0.00 3.91
3635 8219 1.281867 AGGGTTGGAGAAATCGATGCA 59.718 47.619 0.00 0.00 0.00 3.96
3636 8220 2.091541 GGGTTGGAGAAATCGATGCAA 58.908 47.619 0.00 0.00 0.00 4.08
3637 8221 2.491693 GGGTTGGAGAAATCGATGCAAA 59.508 45.455 0.00 0.00 0.00 3.68
3638 8222 3.131046 GGGTTGGAGAAATCGATGCAAAT 59.869 43.478 0.00 0.00 0.00 2.32
3639 8223 4.107622 GGTTGGAGAAATCGATGCAAATG 58.892 43.478 0.00 0.00 0.00 2.32
3640 8224 4.142403 GGTTGGAGAAATCGATGCAAATGA 60.142 41.667 0.00 0.00 0.00 2.57
3641 8225 4.621068 TGGAGAAATCGATGCAAATGAC 57.379 40.909 0.00 0.00 0.00 3.06
3642 8226 4.264253 TGGAGAAATCGATGCAAATGACT 58.736 39.130 0.00 0.00 0.00 3.41
3643 8227 4.333649 TGGAGAAATCGATGCAAATGACTC 59.666 41.667 0.00 0.01 0.00 3.36
3644 8228 4.574013 GGAGAAATCGATGCAAATGACTCT 59.426 41.667 0.00 0.00 0.00 3.24
3645 8229 5.481200 AGAAATCGATGCAAATGACTCTG 57.519 39.130 0.00 0.00 0.00 3.35
3646 8230 3.687572 AATCGATGCAAATGACTCTGC 57.312 42.857 0.00 0.00 39.09 4.26
3651 8235 2.357327 TGCAAATGACTCTGCATTGC 57.643 45.000 11.12 11.12 43.44 3.56
3652 8236 1.614413 TGCAAATGACTCTGCATTGCA 59.386 42.857 15.60 15.60 43.44 4.08
3653 8237 1.990563 GCAAATGACTCTGCATTGCAC 59.009 47.619 7.38 0.00 38.42 4.57
3654 8238 2.608506 GCAAATGACTCTGCATTGCACA 60.609 45.455 7.38 4.62 38.42 4.57
3655 8239 3.644823 CAAATGACTCTGCATTGCACAA 58.355 40.909 7.38 0.00 38.42 3.33
3656 8240 3.570926 AATGACTCTGCATTGCACAAG 57.429 42.857 7.38 10.60 37.12 3.16
3657 8241 1.971481 TGACTCTGCATTGCACAAGT 58.029 45.000 17.51 17.51 33.84 3.16
3658 8242 1.875514 TGACTCTGCATTGCACAAGTC 59.124 47.619 27.29 27.29 42.08 3.01
3659 8243 1.198637 GACTCTGCATTGCACAAGTCC 59.801 52.381 25.39 14.84 38.88 3.85
3660 8244 1.202855 ACTCTGCATTGCACAAGTCCT 60.203 47.619 7.38 0.00 33.79 3.85
3661 8245 1.467734 CTCTGCATTGCACAAGTCCTC 59.532 52.381 7.38 0.00 33.79 3.71
3662 8246 0.167470 CTGCATTGCACAAGTCCTCG 59.833 55.000 7.38 0.00 33.79 4.63
3663 8247 0.534877 TGCATTGCACAAGTCCTCGT 60.535 50.000 7.38 0.00 31.71 4.18
3664 8248 0.110056 GCATTGCACAAGTCCTCGTG 60.110 55.000 3.15 0.00 36.18 4.35
3665 8249 0.518636 CATTGCACAAGTCCTCGTGG 59.481 55.000 0.00 0.00 33.62 4.94
3666 8250 0.606401 ATTGCACAAGTCCTCGTGGG 60.606 55.000 3.23 0.00 33.62 4.61
3710 8294 2.845019 TGCATTGCAGAAGTCCTCG 58.155 52.632 7.38 0.00 33.32 4.63
3711 8295 0.321346 TGCATTGCAGAAGTCCTCGA 59.679 50.000 7.38 0.00 33.32 4.04
3712 8296 1.065926 TGCATTGCAGAAGTCCTCGAT 60.066 47.619 7.38 0.00 33.32 3.59
3713 8297 1.329906 GCATTGCAGAAGTCCTCGATG 59.670 52.381 3.15 0.00 0.00 3.84
3714 8298 1.938577 CATTGCAGAAGTCCTCGATGG 59.061 52.381 0.00 0.00 37.10 3.51
3715 8299 0.976641 TTGCAGAAGTCCTCGATGGT 59.023 50.000 0.00 0.00 37.07 3.55
3716 8300 0.976641 TGCAGAAGTCCTCGATGGTT 59.023 50.000 0.00 0.00 37.07 3.67
3717 8301 2.176045 TGCAGAAGTCCTCGATGGTTA 58.824 47.619 0.00 0.00 37.07 2.85
3718 8302 2.166459 TGCAGAAGTCCTCGATGGTTAG 59.834 50.000 0.00 0.00 37.07 2.34
3719 8303 2.427453 GCAGAAGTCCTCGATGGTTAGA 59.573 50.000 0.00 0.00 37.07 2.10
3720 8304 3.490078 GCAGAAGTCCTCGATGGTTAGAG 60.490 52.174 0.00 0.00 37.07 2.43
3721 8305 3.948473 CAGAAGTCCTCGATGGTTAGAGA 59.052 47.826 0.00 0.00 36.65 3.10
3722 8306 4.399618 CAGAAGTCCTCGATGGTTAGAGAA 59.600 45.833 0.00 0.00 36.65 2.87
3723 8307 5.017490 AGAAGTCCTCGATGGTTAGAGAAA 58.983 41.667 0.00 0.00 36.65 2.52
3724 8308 5.659079 AGAAGTCCTCGATGGTTAGAGAAAT 59.341 40.000 0.00 0.00 36.65 2.17
3725 8309 5.523438 AGTCCTCGATGGTTAGAGAAATC 57.477 43.478 0.00 0.00 36.65 2.17
3726 8310 4.036971 AGTCCTCGATGGTTAGAGAAATCG 59.963 45.833 0.00 0.00 42.45 3.34
3727 8311 4.036498 GTCCTCGATGGTTAGAGAAATCGA 59.964 45.833 6.46 6.46 46.18 3.59
3728 8312 4.827835 TCCTCGATGGTTAGAGAAATCGAT 59.172 41.667 7.02 0.00 46.84 3.59
3729 8313 4.920340 CCTCGATGGTTAGAGAAATCGATG 59.080 45.833 0.00 1.70 46.84 3.84
3730 8314 4.299155 TCGATGGTTAGAGAAATCGATGC 58.701 43.478 0.00 0.00 44.21 3.91
3731 8315 4.051237 CGATGGTTAGAGAAATCGATGCA 58.949 43.478 0.00 0.00 43.48 3.96
3732 8316 4.507756 CGATGGTTAGAGAAATCGATGCAA 59.492 41.667 0.00 0.00 43.48 4.08
3733 8317 5.006649 CGATGGTTAGAGAAATCGATGCAAA 59.993 40.000 0.00 0.00 43.48 3.68
3734 8318 6.293081 CGATGGTTAGAGAAATCGATGCAAAT 60.293 38.462 0.00 0.00 43.48 2.32
3735 8319 6.122850 TGGTTAGAGAAATCGATGCAAATG 57.877 37.500 0.00 0.00 0.00 2.32
3736 8320 5.879777 TGGTTAGAGAAATCGATGCAAATGA 59.120 36.000 0.00 0.00 0.00 2.57
3737 8321 6.183360 TGGTTAGAGAAATCGATGCAAATGAC 60.183 38.462 0.00 0.00 0.00 3.06
3738 8322 6.037610 GGTTAGAGAAATCGATGCAAATGACT 59.962 38.462 0.00 0.00 0.00 3.41
3739 8323 5.481200 AGAGAAATCGATGCAAATGACTG 57.519 39.130 0.00 0.00 0.00 3.51
3740 8324 4.334759 AGAGAAATCGATGCAAATGACTGG 59.665 41.667 0.00 0.00 0.00 4.00
3741 8325 3.379372 AGAAATCGATGCAAATGACTGGG 59.621 43.478 0.00 0.00 0.00 4.45
3742 8326 1.027357 ATCGATGCAAATGACTGGGC 58.973 50.000 0.00 0.00 0.00 5.36
3743 8327 0.322366 TCGATGCAAATGACTGGGCA 60.322 50.000 0.00 0.00 41.00 5.36
3745 8329 1.135527 CGATGCAAATGACTGGGCATT 59.864 47.619 0.00 0.00 46.17 3.56
3746 8330 2.546778 GATGCAAATGACTGGGCATTG 58.453 47.619 2.15 0.00 46.17 2.82
3747 8331 0.037139 TGCAAATGACTGGGCATTGC 60.037 50.000 2.15 0.00 38.42 3.56
3748 8332 0.037139 GCAAATGACTGGGCATTGCA 60.037 50.000 11.39 0.00 38.42 4.08
3749 8333 2.004583 CAAATGACTGGGCATTGCAG 57.995 50.000 11.39 2.61 38.42 4.41
3750 8334 1.546923 CAAATGACTGGGCATTGCAGA 59.453 47.619 11.39 0.00 38.42 4.26
3751 8335 1.927487 AATGACTGGGCATTGCAGAA 58.073 45.000 11.39 0.00 37.12 3.02
3752 8336 1.471119 ATGACTGGGCATTGCAGAAG 58.529 50.000 11.39 6.92 0.00 2.85
3753 8337 0.111061 TGACTGGGCATTGCAGAAGT 59.889 50.000 11.39 10.08 0.00 3.01
3754 8338 0.807496 GACTGGGCATTGCAGAAGTC 59.193 55.000 11.39 14.70 30.90 3.01
3837 8421 5.879223 AGAGAAATCGATGCAAATGACTCTT 59.121 36.000 0.00 0.00 0.00 2.85
3838 8422 6.036953 AGAGAAATCGATGCAAATGACTCTTC 59.963 38.462 0.00 0.00 0.00 2.87
3839 8423 4.526970 AATCGATGCAAATGACTCTTCG 57.473 40.909 0.00 0.00 0.00 3.79
3840 8424 2.959516 TCGATGCAAATGACTCTTCGT 58.040 42.857 0.00 0.00 0.00 3.85
3841 8425 3.325870 TCGATGCAAATGACTCTTCGTT 58.674 40.909 0.00 0.00 31.84 3.85
3842 8426 3.123453 TCGATGCAAATGACTCTTCGTTG 59.877 43.478 0.00 0.00 30.90 4.10
3843 8427 3.123453 CGATGCAAATGACTCTTCGTTGA 59.877 43.478 0.00 0.00 30.90 3.18
3844 8428 4.377328 CGATGCAAATGACTCTTCGTTGAA 60.377 41.667 0.00 0.00 30.90 2.69
3845 8429 4.472691 TGCAAATGACTCTTCGTTGAAG 57.527 40.909 0.09 0.09 40.65 3.02
3847 8431 4.574421 TGCAAATGACTCTTCGTTGAAGAA 59.426 37.500 10.20 0.00 46.18 2.52
3848 8432 5.142962 GCAAATGACTCTTCGTTGAAGAAG 58.857 41.667 10.20 7.34 46.18 2.85
3849 8433 5.277538 GCAAATGACTCTTCGTTGAAGAAGT 60.278 40.000 10.20 9.93 46.18 3.01
3850 8434 6.358762 CAAATGACTCTTCGTTGAAGAAGTC 58.641 40.000 20.22 20.22 46.18 3.01
3851 8435 3.978687 TGACTCTTCGTTGAAGAAGTCC 58.021 45.455 22.09 10.59 46.18 3.85
3852 8436 3.637229 TGACTCTTCGTTGAAGAAGTCCT 59.363 43.478 22.09 4.57 46.18 3.85
3853 8437 4.231439 GACTCTTCGTTGAAGAAGTCCTC 58.769 47.826 18.26 5.63 46.18 3.71
3859 8622 1.349357 GTTGAAGAAGTCCTCAGGGCT 59.651 52.381 0.00 0.00 0.00 5.19
3864 8627 2.745968 AGAAGTCCTCAGGGCTTAGAG 58.254 52.381 11.66 0.00 32.18 2.43
3868 8631 3.730269 AGTCCTCAGGGCTTAGAGAAAT 58.270 45.455 0.00 0.00 33.74 2.17
3869 8632 3.709141 AGTCCTCAGGGCTTAGAGAAATC 59.291 47.826 0.00 0.00 33.74 2.17
3871 8634 2.695666 CCTCAGGGCTTAGAGAAATCGA 59.304 50.000 0.00 0.00 33.74 3.59
3872 8635 3.323403 CCTCAGGGCTTAGAGAAATCGAT 59.677 47.826 0.00 0.00 33.74 3.59
3875 8638 2.435805 AGGGCTTAGAGAAATCGATGCA 59.564 45.455 0.00 0.00 0.00 3.96
3876 8639 3.118261 AGGGCTTAGAGAAATCGATGCAA 60.118 43.478 0.00 0.00 0.00 4.08
3878 8641 4.276926 GGGCTTAGAGAAATCGATGCAAAT 59.723 41.667 0.00 0.00 0.00 2.32
3881 8644 5.906285 GCTTAGAGAAATCGATGCAAATGAC 59.094 40.000 0.00 0.00 0.00 3.06
3882 8645 6.238320 GCTTAGAGAAATCGATGCAAATGACT 60.238 38.462 0.00 0.00 0.00 3.41
3883 8646 5.731599 AGAGAAATCGATGCAAATGACTC 57.268 39.130 0.00 0.19 0.00 3.36
3905 8668 3.801698 TGCATTGCAGAAGTCCTCTATC 58.198 45.455 7.38 0.00 33.32 2.08
3926 8689 3.131223 TCGCCTCAGACAAGGATAAGAAG 59.869 47.826 0.00 0.00 38.87 2.85
4280 9174 7.514784 TGCCATTCATATAATTCAGAAGGTG 57.485 36.000 0.00 0.00 0.00 4.00
4556 9471 5.069781 GGAGTGAGTAAGGATGTTGCTAGAT 59.930 44.000 0.00 0.00 0.00 1.98
4951 9869 4.346418 ACCATTTCTTTTTGTATGGGCACA 59.654 37.500 0.00 0.00 41.45 4.57
4962 9880 0.111061 ATGGGCACAAAGAGCACTGA 59.889 50.000 0.00 0.00 36.08 3.41
4963 9881 0.535780 TGGGCACAAAGAGCACTGAG 60.536 55.000 0.00 0.00 36.08 3.35
5060 9978 6.991938 ACAGGATGCTTTAGTGCAAATTTTA 58.008 32.000 0.00 0.00 46.61 1.52
5208 10126 8.571461 AGATAAATTTCTGCTGATCTTTGTCA 57.429 30.769 18.07 0.00 0.00 3.58
5314 10232 8.045176 AGAGACTAGAAAAACATATTGTTGCC 57.955 34.615 0.00 0.00 40.14 4.52
5408 10327 3.947910 TTAGGTCACAGTAGGGAAACG 57.052 47.619 0.00 0.00 0.00 3.60
5529 10448 1.843851 TGAACCTGAGTGGACTGGTTT 59.156 47.619 0.00 0.00 46.60 3.27
5934 10853 4.668576 AGAAATAACAGTCATGTGCACG 57.331 40.909 13.13 0.00 40.39 5.34
5940 10859 0.041047 CAGTCATGTGCACGTGTTGG 60.041 55.000 32.41 20.71 34.59 3.77
5943 10862 2.597217 ATGTGCACGTGTTGGGGG 60.597 61.111 18.38 0.00 0.00 5.40
5960 10879 2.619074 GGGGGAGTGTTCTCTTCCATTG 60.619 54.545 2.29 0.00 40.29 2.82
5961 10880 2.619074 GGGGAGTGTTCTCTTCCATTGG 60.619 54.545 0.00 0.00 40.29 3.16
5991 10910 8.628630 AAAATATATTTGGAGCTCTAGAAGGC 57.371 34.615 14.64 0.00 0.00 4.35
6163 11083 0.535335 GCCCCAGTCGTATCTGTTCA 59.465 55.000 0.00 0.00 34.02 3.18
6179 11099 6.092955 TCTGTTCAAGAATAACCGTGTAGT 57.907 37.500 0.00 0.00 29.54 2.73
6255 11175 2.166459 GGTTTTATTGAGGCCCTTCAGC 59.834 50.000 0.00 0.00 0.00 4.26
6333 11258 8.068380 CGATTATCGTCGAATAATATCTGCCTA 58.932 37.037 6.43 0.00 44.06 3.93
6336 11261 5.008331 TCGTCGAATAATATCTGCCTAGGT 58.992 41.667 11.31 0.00 0.00 3.08
6385 11310 1.369689 GTGCTTCACTGCTTGTGCG 60.370 57.895 5.71 1.93 45.81 5.34
6438 11363 1.219522 AAACACGTGGCGCTAGTGTC 61.220 55.000 26.43 0.00 46.91 3.67
6442 12117 2.088763 CGTGGCGCTAGTGTCAGTG 61.089 63.158 11.63 3.11 0.00 3.66
6448 12123 2.520979 GCGCTAGTGTCAGTGAAGTAG 58.479 52.381 0.00 3.93 0.00 2.57
6455 12130 1.344438 TGTCAGTGAAGTAGCACCAGG 59.656 52.381 0.00 0.00 39.59 4.45
6475 12150 6.959361 CCAGGAGGTTAATGTTAATTGATCG 58.041 40.000 0.00 0.00 0.00 3.69
6575 12260 2.753452 GCATCATCAGGCATGGGATTAG 59.247 50.000 0.00 0.00 32.64 1.73
6597 12285 5.685728 AGTAAGATCCCTAATTGGCAGAAC 58.314 41.667 0.00 0.00 0.00 3.01
6619 12307 1.135257 GTGACCGTGATGTGAGAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
6764 12455 3.713826 TGATTTAGGTGGGTTCCTGAC 57.286 47.619 0.00 0.00 38.41 3.51
6814 12511 0.675633 GCAGACAACCTTTGCCATGT 59.324 50.000 0.00 0.00 31.79 3.21
6875 12572 4.622701 ACTTGCTTCAGTCACAAAGAAC 57.377 40.909 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 5.460419 CGTGTTAATATCTTCTCTGTCCAGC 59.540 44.000 0.00 0.00 0.00 4.85
100 101 3.167921 CGGTGATGGTCCGTGTTAATA 57.832 47.619 0.00 0.00 42.62 0.98
138 149 1.005512 TGGGTGGTGTTCGATGTCG 60.006 57.895 0.00 0.00 41.45 4.35
144 155 1.384525 TTTTGTCTGGGTGGTGTTCG 58.615 50.000 0.00 0.00 0.00 3.95
175 186 1.496429 CAGGTAAGATCTTGGGCCCAT 59.504 52.381 29.23 11.76 0.00 4.00
176 187 0.918983 CAGGTAAGATCTTGGGCCCA 59.081 55.000 24.45 24.45 0.00 5.36
220 231 0.240945 GGGGATATTGATTTGCGCCG 59.759 55.000 4.18 0.00 0.00 6.46
224 235 5.279156 GGTCATTCAGGGGATATTGATTTGC 60.279 44.000 0.00 0.00 0.00 3.68
255 266 5.505780 ACAACATGGAATAATTTCTCCCGA 58.494 37.500 0.00 0.00 32.16 5.14
273 284 2.988684 GATGCGCCCCCAACAACA 60.989 61.111 4.18 0.00 0.00 3.33
300 311 0.953471 TTGAAACATCTGGCCGACGG 60.953 55.000 10.29 10.29 0.00 4.79
329 340 5.715921 TCTGTATATGAGATCCCTTGGTGA 58.284 41.667 0.00 0.00 0.00 4.02
335 346 6.499699 TCTTGCATTCTGTATATGAGATCCCT 59.500 38.462 0.00 0.00 0.00 4.20
391 402 6.157645 ACTCACCTCACATCCTAGAATTGATT 59.842 38.462 0.00 0.00 0.00 2.57
392 403 5.664908 ACTCACCTCACATCCTAGAATTGAT 59.335 40.000 0.00 0.00 0.00 2.57
637 1727 6.478512 TTACTTCTTTTCTTGGGTTGCATT 57.521 33.333 0.00 0.00 0.00 3.56
668 1758 6.218938 TGAATGGATGGATGGATAGATGGATT 59.781 38.462 0.00 0.00 0.00 3.01
672 1763 5.299531 GCATGAATGGATGGATGGATAGATG 59.700 44.000 0.00 0.00 0.00 2.90
676 1768 4.202588 TGTGCATGAATGGATGGATGGATA 60.203 41.667 0.00 0.00 0.00 2.59
815 1916 1.173444 TTAGCGAGAGATCCCCGAGC 61.173 60.000 3.60 1.60 0.00 5.03
910 2011 6.255887 CGAGGTTTATAAGCTTCAGTTACCAG 59.744 42.308 0.00 1.25 39.77 4.00
935 2036 4.840005 GCAGGGTGTCGCCTAGGC 62.840 72.222 24.75 24.75 37.43 3.93
976 2081 3.255888 CCCAACAAAAAGCCTCTACTTCC 59.744 47.826 0.00 0.00 0.00 3.46
1137 2242 1.627297 CCTTCCCCTTCCCCTTCTCG 61.627 65.000 0.00 0.00 0.00 4.04
1261 3102 4.508971 CACGCTGAGCACTAAATTAATCG 58.491 43.478 4.88 0.00 0.00 3.34
1266 3107 1.466167 CAGCACGCTGAGCACTAAATT 59.534 47.619 13.87 0.00 46.30 1.82
1291 3136 3.727970 GCGATTTGGGTCGATCAAAGAAC 60.728 47.826 17.51 12.14 44.06 3.01
1360 3205 7.655328 ACTCTCTGTCTCTCTGTGTTTTATTTG 59.345 37.037 0.00 0.00 0.00 2.32
1477 3322 7.023575 GGCACAAGATTCACAAAATACTACAG 58.976 38.462 0.00 0.00 0.00 2.74
1552 3397 2.542550 TCCAGGGGAACACTTTATCGA 58.457 47.619 0.00 0.00 0.00 3.59
1553 3398 3.560636 ATCCAGGGGAACACTTTATCG 57.439 47.619 0.00 0.00 34.34 2.92
1658 5348 8.250143 ACTAGGGAACATTGACAAAAGAAATT 57.750 30.769 0.00 0.00 0.00 1.82
1663 5356 6.263168 ACTGAACTAGGGAACATTGACAAAAG 59.737 38.462 0.00 0.00 0.00 2.27
1674 5367 4.065789 CAAGGACAACTGAACTAGGGAAC 58.934 47.826 0.00 0.00 0.00 3.62
1901 5675 5.316327 TGTTGTTGTTTGTTGATGCTGTA 57.684 34.783 0.00 0.00 0.00 2.74
1902 5676 4.185467 TGTTGTTGTTTGTTGATGCTGT 57.815 36.364 0.00 0.00 0.00 4.40
1903 5677 5.527511 TTTGTTGTTGTTTGTTGATGCTG 57.472 34.783 0.00 0.00 0.00 4.41
1904 5678 4.093261 GCTTTGTTGTTGTTTGTTGATGCT 59.907 37.500 0.00 0.00 0.00 3.79
1905 5679 4.333615 GCTTTGTTGTTGTTTGTTGATGC 58.666 39.130 0.00 0.00 0.00 3.91
1906 5680 4.630940 AGGCTTTGTTGTTGTTTGTTGATG 59.369 37.500 0.00 0.00 0.00 3.07
1907 5681 4.831107 AGGCTTTGTTGTTGTTTGTTGAT 58.169 34.783 0.00 0.00 0.00 2.57
1908 5682 4.264460 AGGCTTTGTTGTTGTTTGTTGA 57.736 36.364 0.00 0.00 0.00 3.18
1909 5683 5.355467 AAAGGCTTTGTTGTTGTTTGTTG 57.645 34.783 12.53 0.00 0.00 3.33
1910 5684 6.227522 ACTAAAGGCTTTGTTGTTGTTTGTT 58.772 32.000 22.32 0.00 0.00 2.83
1911 5685 5.789521 ACTAAAGGCTTTGTTGTTGTTTGT 58.210 33.333 22.32 0.00 0.00 2.83
1912 5686 5.290885 GGACTAAAGGCTTTGTTGTTGTTTG 59.709 40.000 22.32 0.00 0.00 2.93
1913 5687 5.416083 GGACTAAAGGCTTTGTTGTTGTTT 58.584 37.500 22.32 0.00 0.00 2.83
1914 5688 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
1915 5689 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
1916 5690 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
1917 5691 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
1918 5692 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
1919 5693 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
1920 5694 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
1921 5695 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
1922 5696 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
1923 5697 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
1924 5698 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
1925 5699 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
1926 5700 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
1937 5711 1.886542 GAGCCTACCCCAACTTGTTTG 59.113 52.381 0.00 0.00 34.63 2.93
1938 5712 1.544759 CGAGCCTACCCCAACTTGTTT 60.545 52.381 0.00 0.00 0.00 2.83
1939 5713 0.036306 CGAGCCTACCCCAACTTGTT 59.964 55.000 0.00 0.00 0.00 2.83
1940 5714 1.125711 ACGAGCCTACCCCAACTTGT 61.126 55.000 0.00 0.00 0.00 3.16
1941 5715 0.036306 AACGAGCCTACCCCAACTTG 59.964 55.000 0.00 0.00 0.00 3.16
1942 5716 0.769247 AAACGAGCCTACCCCAACTT 59.231 50.000 0.00 0.00 0.00 2.66
1943 5717 1.277273 GTAAACGAGCCTACCCCAACT 59.723 52.381 0.00 0.00 0.00 3.16
1944 5718 1.002315 TGTAAACGAGCCTACCCCAAC 59.998 52.381 0.00 0.00 0.00 3.77
1945 5719 1.276989 CTGTAAACGAGCCTACCCCAA 59.723 52.381 0.00 0.00 0.00 4.12
1946 5720 0.899720 CTGTAAACGAGCCTACCCCA 59.100 55.000 0.00 0.00 0.00 4.96
1947 5721 0.461516 GCTGTAAACGAGCCTACCCC 60.462 60.000 0.00 0.00 0.00 4.95
1948 5722 0.248289 TGCTGTAAACGAGCCTACCC 59.752 55.000 0.00 0.00 35.43 3.69
1949 5723 2.202566 GATGCTGTAAACGAGCCTACC 58.797 52.381 0.00 0.00 35.43 3.18
1950 5724 2.888594 TGATGCTGTAAACGAGCCTAC 58.111 47.619 0.00 0.00 35.43 3.18
1951 5725 3.259064 GTTGATGCTGTAAACGAGCCTA 58.741 45.455 0.00 0.00 35.43 3.93
1952 5726 2.076863 GTTGATGCTGTAAACGAGCCT 58.923 47.619 0.00 0.00 35.43 4.58
1953 5727 1.804151 TGTTGATGCTGTAAACGAGCC 59.196 47.619 0.00 0.00 35.43 4.70
1954 5728 3.747099 ATGTTGATGCTGTAAACGAGC 57.253 42.857 0.00 0.00 36.95 5.03
1955 5729 8.006027 CACATATATGTTGATGCTGTAAACGAG 58.994 37.037 15.85 0.00 39.39 4.18
1956 5730 7.708752 TCACATATATGTTGATGCTGTAAACGA 59.291 33.333 15.85 2.57 39.39 3.85
1957 5731 7.850501 TCACATATATGTTGATGCTGTAAACG 58.149 34.615 15.85 0.21 39.39 3.60
1960 5734 9.002600 GGAATCACATATATGTTGATGCTGTAA 57.997 33.333 22.40 4.93 39.39 2.41
2031 5805 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2033 5807 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2034 5808 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2035 5809 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2036 5810 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2037 5811 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2039 5813 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2040 5814 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2068 5842 6.525629 AGAGCATTTTTGACACTACACTAGT 58.474 36.000 0.00 0.00 40.28 2.57
2069 5843 7.426929 AAGAGCATTTTTGACACTACACTAG 57.573 36.000 0.00 0.00 0.00 2.57
2071 5845 7.986085 ATAAGAGCATTTTTGACACTACACT 57.014 32.000 0.00 0.00 0.00 3.55
2077 5851 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
2078 5852 9.639563 TCCCATAATATAAGAGCATTTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
2079 5853 9.899226 GTCCCATAATATAAGAGCATTTTTGAC 57.101 33.333 0.00 0.00 0.00 3.18
2080 5854 8.783093 CGTCCCATAATATAAGAGCATTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
2081 5855 8.023128 CCGTCCCATAATATAAGAGCATTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
2082 5856 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
2083 5857 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
2084 5858 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
2085 5859 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
2086 5860 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
2087 5861 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
2088 5862 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2089 5863 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2090 5864 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2091 5865 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2092 5866 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2093 5867 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2094 5868 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2095 5869 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2096 5870 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2097 5871 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2098 5872 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2099 5873 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2100 5874 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
2101 5875 0.614134 ACAACTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
2102 5876 1.264295 AACAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
2103 5877 4.525912 TTTAACAACTACTCCCTCCGTC 57.474 45.455 0.00 0.00 0.00 4.79
2104 5878 5.494390 AATTTAACAACTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
2105 5879 7.101700 AGTTAATTTAACAACTACTCCCTCCG 58.898 38.462 18.83 0.00 41.07 4.63
2106 5880 8.098912 TGAGTTAATTTAACAACTACTCCCTCC 58.901 37.037 18.83 0.00 41.07 4.30
2107 5881 9.668497 ATGAGTTAATTTAACAACTACTCCCTC 57.332 33.333 18.83 6.52 41.07 4.30
2139 5913 2.034053 TGACTTCGGGCATTGTTGAAAC 59.966 45.455 0.00 0.00 0.00 2.78
2222 6003 3.530149 TCCTCATAAAGGGGTTAAAGGGG 59.470 47.826 0.00 0.00 46.23 4.79
2237 6019 5.964477 AGACAATTGGAAGGTACTCCTCATA 59.036 40.000 10.83 0.00 44.35 2.15
2239 6021 4.168101 AGACAATTGGAAGGTACTCCTCA 58.832 43.478 10.83 0.00 44.35 3.86
2378 6160 0.898326 TGCACTTCGGTCCTGAGCTA 60.898 55.000 0.00 0.00 0.00 3.32
2451 6240 6.031471 CCGTTAAACCAAGCAATAATGTACC 58.969 40.000 0.00 0.00 0.00 3.34
2455 6244 6.262601 CCTACCGTTAAACCAAGCAATAATG 58.737 40.000 0.00 0.00 0.00 1.90
2481 6270 7.386848 ACACATGGTATATTAATACAAGACGCC 59.613 37.037 0.00 0.00 39.90 5.68
2532 6321 1.915489 ACTTATCCCATGCACCTGACA 59.085 47.619 0.00 0.00 0.00 3.58
2548 6337 4.635765 GCCACAACATCTGAATAGCACTTA 59.364 41.667 0.00 0.00 0.00 2.24
2652 6442 5.239525 CCGTATCATGTGACAGACTAGATGA 59.760 44.000 0.00 0.00 0.00 2.92
2693 6485 4.157840 TCACAGCTCGAAGACAAAGCTATA 59.842 41.667 0.00 0.00 44.30 1.31
2830 6622 0.977395 AACCACTCCAGTAGGCTGAC 59.023 55.000 0.00 0.00 45.28 3.51
2884 6676 2.833943 TCATTGTCTGAAGCCAGCTCTA 59.166 45.455 0.00 0.00 40.20 2.43
3287 7778 0.038892 TGTCCACGTTAAGGCTCGTC 60.039 55.000 0.00 0.00 38.23 4.20
3461 8000 3.002038 TCTCTAACCCTCGAGGACTTC 57.998 52.381 33.39 0.00 39.89 3.01
3509 8093 3.002038 TCTCTAACCCTCGAGGACTTC 57.998 52.381 33.39 0.00 39.89 3.01
3619 8203 4.701651 AGTCATTTGCATCGATTTCTCCAA 59.298 37.500 0.00 0.00 0.00 3.53
3620 8204 4.264253 AGTCATTTGCATCGATTTCTCCA 58.736 39.130 0.00 0.00 0.00 3.86
3621 8205 4.574013 AGAGTCATTTGCATCGATTTCTCC 59.426 41.667 0.00 0.00 0.00 3.71
3622 8206 5.499935 CAGAGTCATTTGCATCGATTTCTC 58.500 41.667 0.00 0.00 0.00 2.87
3623 8207 4.201891 GCAGAGTCATTTGCATCGATTTCT 60.202 41.667 0.00 0.00 40.02 2.52
3624 8208 4.033684 GCAGAGTCATTTGCATCGATTTC 58.966 43.478 0.00 0.00 40.02 2.17
3625 8209 3.441222 TGCAGAGTCATTTGCATCGATTT 59.559 39.130 0.00 0.00 44.72 2.17
3626 8210 3.011818 TGCAGAGTCATTTGCATCGATT 58.988 40.909 0.00 0.00 44.72 3.34
3627 8211 2.635714 TGCAGAGTCATTTGCATCGAT 58.364 42.857 1.62 0.00 44.72 3.59
3628 8212 2.097680 TGCAGAGTCATTTGCATCGA 57.902 45.000 1.62 0.00 44.72 3.59
3633 8217 1.990563 GTGCAATGCAGAGTCATTTGC 59.009 47.619 8.73 11.12 40.08 3.68
3634 8218 3.291809 TGTGCAATGCAGAGTCATTTG 57.708 42.857 8.73 0.00 40.08 2.32
3635 8219 3.319972 ACTTGTGCAATGCAGAGTCATTT 59.680 39.130 8.73 0.00 40.08 2.32
3636 8220 2.889045 ACTTGTGCAATGCAGAGTCATT 59.111 40.909 8.73 0.00 40.08 2.57
3637 8221 2.486982 GACTTGTGCAATGCAGAGTCAT 59.513 45.455 30.41 11.40 44.77 3.06
3638 8222 1.875514 GACTTGTGCAATGCAGAGTCA 59.124 47.619 30.41 16.37 44.77 3.41
3639 8223 1.198637 GGACTTGTGCAATGCAGAGTC 59.801 52.381 28.86 28.86 44.72 3.36
3640 8224 1.202855 AGGACTTGTGCAATGCAGAGT 60.203 47.619 19.80 19.80 40.08 3.24
3641 8225 1.467734 GAGGACTTGTGCAATGCAGAG 59.532 52.381 8.73 12.47 40.08 3.35
3642 8226 1.527034 GAGGACTTGTGCAATGCAGA 58.473 50.000 8.73 3.90 40.08 4.26
3643 8227 0.167470 CGAGGACTTGTGCAATGCAG 59.833 55.000 8.73 0.00 40.08 4.41
3644 8228 0.534877 ACGAGGACTTGTGCAATGCA 60.535 50.000 2.72 2.72 35.60 3.96
3645 8229 0.110056 CACGAGGACTTGTGCAATGC 60.110 55.000 6.76 0.00 38.06 3.56
3646 8230 0.518636 CCACGAGGACTTGTGCAATG 59.481 55.000 13.13 0.00 42.30 2.82
3647 8231 0.606401 CCCACGAGGACTTGTGCAAT 60.606 55.000 13.13 0.00 42.30 3.56
3648 8232 1.227823 CCCACGAGGACTTGTGCAA 60.228 57.895 13.13 0.00 42.30 4.08
3649 8233 1.978455 AACCCACGAGGACTTGTGCA 61.978 55.000 13.13 0.00 42.30 4.57
3650 8234 0.034337 TAACCCACGAGGACTTGTGC 59.966 55.000 13.13 0.00 42.30 4.57
3651 8235 1.616865 TCTAACCCACGAGGACTTGTG 59.383 52.381 11.88 11.88 43.06 3.33
3652 8236 1.893801 CTCTAACCCACGAGGACTTGT 59.106 52.381 0.00 0.00 39.89 3.16
3653 8237 2.168496 TCTCTAACCCACGAGGACTTG 58.832 52.381 0.00 0.00 39.89 3.16
3654 8238 2.599408 TCTCTAACCCACGAGGACTT 57.401 50.000 0.00 0.00 39.89 3.01
3655 8239 2.599408 TTCTCTAACCCACGAGGACT 57.401 50.000 0.00 0.00 39.89 3.85
3656 8240 3.734293 CGATTTCTCTAACCCACGAGGAC 60.734 52.174 0.00 0.00 39.89 3.85
3657 8241 2.426024 CGATTTCTCTAACCCACGAGGA 59.574 50.000 0.00 0.00 39.89 3.71
3658 8242 2.426024 TCGATTTCTCTAACCCACGAGG 59.574 50.000 0.00 0.00 43.78 4.63
3659 8243 3.777465 TCGATTTCTCTAACCCACGAG 57.223 47.619 0.00 0.00 0.00 4.18
3660 8244 3.737047 GCATCGATTTCTCTAACCCACGA 60.737 47.826 0.00 0.00 0.00 4.35
3661 8245 2.540101 GCATCGATTTCTCTAACCCACG 59.460 50.000 0.00 0.00 0.00 4.94
3662 8246 3.531538 TGCATCGATTTCTCTAACCCAC 58.468 45.455 0.00 0.00 0.00 4.61
3663 8247 3.904800 TGCATCGATTTCTCTAACCCA 57.095 42.857 0.00 0.00 0.00 4.51
3664 8248 5.296780 TCATTTGCATCGATTTCTCTAACCC 59.703 40.000 0.00 0.00 0.00 4.11
3665 8249 6.037610 AGTCATTTGCATCGATTTCTCTAACC 59.962 38.462 0.00 0.00 0.00 2.85
3666 8250 7.009568 AGTCATTTGCATCGATTTCTCTAAC 57.990 36.000 0.00 0.00 0.00 2.34
3709 8293 4.051237 TGCATCGATTTCTCTAACCATCG 58.949 43.478 0.00 0.00 39.92 3.84
3710 8294 5.991328 TTGCATCGATTTCTCTAACCATC 57.009 39.130 0.00 0.00 0.00 3.51
3711 8295 6.543465 TCATTTGCATCGATTTCTCTAACCAT 59.457 34.615 0.00 0.00 0.00 3.55
3712 8296 5.879777 TCATTTGCATCGATTTCTCTAACCA 59.120 36.000 0.00 0.00 0.00 3.67
3713 8297 6.037610 AGTCATTTGCATCGATTTCTCTAACC 59.962 38.462 0.00 0.00 0.00 2.85
3714 8298 6.904011 CAGTCATTTGCATCGATTTCTCTAAC 59.096 38.462 0.00 0.00 0.00 2.34
3715 8299 6.037500 CCAGTCATTTGCATCGATTTCTCTAA 59.962 38.462 0.00 0.00 0.00 2.10
3716 8300 5.525012 CCAGTCATTTGCATCGATTTCTCTA 59.475 40.000 0.00 0.00 0.00 2.43
3717 8301 4.334759 CCAGTCATTTGCATCGATTTCTCT 59.665 41.667 0.00 0.00 0.00 3.10
3718 8302 4.497006 CCCAGTCATTTGCATCGATTTCTC 60.497 45.833 0.00 0.00 0.00 2.87
3719 8303 3.379372 CCCAGTCATTTGCATCGATTTCT 59.621 43.478 0.00 0.00 0.00 2.52
3720 8304 3.699067 CCCAGTCATTTGCATCGATTTC 58.301 45.455 0.00 0.00 0.00 2.17
3721 8305 2.159198 GCCCAGTCATTTGCATCGATTT 60.159 45.455 0.00 0.00 0.00 2.17
3722 8306 1.406539 GCCCAGTCATTTGCATCGATT 59.593 47.619 0.00 0.00 0.00 3.34
3723 8307 1.027357 GCCCAGTCATTTGCATCGAT 58.973 50.000 0.00 0.00 0.00 3.59
3724 8308 0.322366 TGCCCAGTCATTTGCATCGA 60.322 50.000 0.00 0.00 0.00 3.59
3725 8309 0.742505 ATGCCCAGTCATTTGCATCG 59.257 50.000 0.00 0.00 40.21 3.84
3726 8310 2.546778 CAATGCCCAGTCATTTGCATC 58.453 47.619 0.00 0.00 43.23 3.91
3727 8311 1.406341 GCAATGCCCAGTCATTTGCAT 60.406 47.619 0.00 0.00 45.79 3.96
3728 8312 0.037139 GCAATGCCCAGTCATTTGCA 60.037 50.000 0.00 0.00 34.68 4.08
3729 8313 0.037139 TGCAATGCCCAGTCATTTGC 60.037 50.000 1.53 0.00 34.68 3.68
3730 8314 1.546923 TCTGCAATGCCCAGTCATTTG 59.453 47.619 1.53 0.00 34.68 2.32
3731 8315 1.927487 TCTGCAATGCCCAGTCATTT 58.073 45.000 1.53 0.00 34.68 2.32
3732 8316 1.822990 CTTCTGCAATGCCCAGTCATT 59.177 47.619 1.53 0.00 37.16 2.57
3733 8317 1.272313 ACTTCTGCAATGCCCAGTCAT 60.272 47.619 1.53 0.00 0.00 3.06
3734 8318 0.111061 ACTTCTGCAATGCCCAGTCA 59.889 50.000 1.53 0.00 0.00 3.41
3735 8319 0.807496 GACTTCTGCAATGCCCAGTC 59.193 55.000 1.53 7.72 0.00 3.51
3736 8320 0.610232 GGACTTCTGCAATGCCCAGT 60.610 55.000 1.53 1.42 0.00 4.00
3737 8321 0.323178 AGGACTTCTGCAATGCCCAG 60.323 55.000 1.53 0.00 0.00 4.45
3738 8322 0.322816 GAGGACTTCTGCAATGCCCA 60.323 55.000 1.53 0.00 0.00 5.36
3739 8323 1.372087 CGAGGACTTCTGCAATGCCC 61.372 60.000 1.53 0.00 0.00 5.36
3740 8324 0.391661 TCGAGGACTTCTGCAATGCC 60.392 55.000 1.53 0.00 0.00 4.40
3741 8325 1.005340 CTCGAGGACTTCTGCAATGC 58.995 55.000 3.91 0.00 0.00 3.56
3742 8326 1.649664 CCTCGAGGACTTCTGCAATG 58.350 55.000 28.21 0.00 37.39 2.82
3743 8327 0.539051 CCCTCGAGGACTTCTGCAAT 59.461 55.000 33.39 0.00 38.24 3.56
3744 8328 0.832135 ACCCTCGAGGACTTCTGCAA 60.832 55.000 33.39 0.00 39.89 4.08
3745 8329 0.832135 AACCCTCGAGGACTTCTGCA 60.832 55.000 33.39 0.00 39.89 4.41
3746 8330 1.135333 CTAACCCTCGAGGACTTCTGC 59.865 57.143 33.39 0.00 39.89 4.26
3747 8331 2.685897 CTCTAACCCTCGAGGACTTCTG 59.314 54.545 33.39 16.91 39.89 3.02
3748 8332 2.577105 TCTCTAACCCTCGAGGACTTCT 59.423 50.000 33.39 13.62 39.89 2.85
3749 8333 3.002038 TCTCTAACCCTCGAGGACTTC 57.998 52.381 33.39 0.00 39.89 3.01
3750 8334 3.453059 TTCTCTAACCCTCGAGGACTT 57.547 47.619 33.39 23.30 39.89 3.01
3751 8335 3.453059 TTTCTCTAACCCTCGAGGACT 57.547 47.619 33.39 20.39 39.89 3.85
3752 8336 3.243134 CGATTTCTCTAACCCTCGAGGAC 60.243 52.174 33.39 7.60 39.89 3.85
3753 8337 2.950309 CGATTTCTCTAACCCTCGAGGA 59.050 50.000 33.39 12.34 39.89 3.71
3754 8338 2.950309 TCGATTTCTCTAACCCTCGAGG 59.050 50.000 25.36 25.36 43.78 4.63
3837 8421 1.618837 CCCTGAGGACTTCTTCAACGA 59.381 52.381 0.00 0.00 31.40 3.85
3838 8422 1.941668 GCCCTGAGGACTTCTTCAACG 60.942 57.143 0.00 0.00 31.40 4.10
3839 8423 1.349357 AGCCCTGAGGACTTCTTCAAC 59.651 52.381 0.00 0.00 31.40 3.18
3840 8424 1.734655 AGCCCTGAGGACTTCTTCAA 58.265 50.000 0.00 0.00 31.40 2.69
3841 8425 1.734655 AAGCCCTGAGGACTTCTTCA 58.265 50.000 0.00 0.00 33.47 3.02
3842 8426 3.100671 TCTAAGCCCTGAGGACTTCTTC 58.899 50.000 2.44 0.00 33.37 2.87
3843 8427 3.103742 CTCTAAGCCCTGAGGACTTCTT 58.896 50.000 2.44 2.25 33.37 2.52
3844 8428 2.313342 TCTCTAAGCCCTGAGGACTTCT 59.687 50.000 2.44 0.00 33.37 2.85
3845 8429 2.741145 TCTCTAAGCCCTGAGGACTTC 58.259 52.381 2.44 0.00 33.37 3.01
3847 8431 2.930109 TTCTCTAAGCCCTGAGGACT 57.070 50.000 0.00 0.00 33.47 3.85
3848 8432 3.491792 CGATTTCTCTAAGCCCTGAGGAC 60.492 52.174 0.00 0.00 33.47 3.85
3849 8433 2.695666 CGATTTCTCTAAGCCCTGAGGA 59.304 50.000 0.00 0.00 33.47 3.71
3850 8434 2.695666 TCGATTTCTCTAAGCCCTGAGG 59.304 50.000 0.00 0.00 0.00 3.86
3851 8435 4.305769 CATCGATTTCTCTAAGCCCTGAG 58.694 47.826 0.00 0.00 0.00 3.35
3852 8436 3.493350 GCATCGATTTCTCTAAGCCCTGA 60.493 47.826 0.00 0.00 0.00 3.86
3853 8437 2.805099 GCATCGATTTCTCTAAGCCCTG 59.195 50.000 0.00 0.00 0.00 4.45
3859 8622 7.010830 CAGAGTCATTTGCATCGATTTCTCTAA 59.989 37.037 0.00 0.00 0.00 2.10
3864 8627 4.033684 GCAGAGTCATTTGCATCGATTTC 58.966 43.478 0.00 0.00 40.02 2.17
3868 8631 2.097680 TGCAGAGTCATTTGCATCGA 57.902 45.000 1.62 0.00 44.72 3.59
3905 8668 3.131223 TCTTCTTATCCTTGTCTGAGGCG 59.869 47.826 0.00 0.00 36.71 5.52
3926 8689 0.673022 CTGAAGCTGCAGGACACCTC 60.673 60.000 14.66 0.00 32.26 3.85
4280 9174 3.940852 TGCATGTATTGACACACCAGATC 59.059 43.478 0.00 0.00 38.76 2.75
4556 9471 5.279809 GGATGGACTACTTACTTTGACCACA 60.280 44.000 0.00 0.00 0.00 4.17
4901 9816 9.877178 TGAAATCTAACAAAGAAGAGATAGTCC 57.123 33.333 0.00 0.00 37.89 3.85
4951 9869 2.604046 AACGACACTCAGTGCTCTTT 57.396 45.000 4.13 0.00 36.98 2.52
4962 9880 1.878953 CTAGCCAACCAAACGACACT 58.121 50.000 0.00 0.00 0.00 3.55
4963 9881 0.237498 GCTAGCCAACCAAACGACAC 59.763 55.000 2.29 0.00 0.00 3.67
5126 10044 8.807667 AACTTGAAATCAATGAATTCACTGAC 57.192 30.769 20.88 9.91 34.78 3.51
5208 10126 7.601886 TCATTCACACAACTTGACAATTTTGTT 59.398 29.630 10.99 0.00 42.43 2.83
5432 10351 1.136305 GGCGCTATTCACTCAGTGGTA 59.864 52.381 7.64 0.00 33.87 3.25
5529 10448 9.755804 CTGTCTAGACTCTGAAATATAATTGCA 57.244 33.333 23.01 0.00 0.00 4.08
5564 10483 7.571244 GCAATGATCAAATACACAGGTATACGG 60.571 40.741 0.00 0.00 39.28 4.02
5830 10749 1.911057 TGTCCTTCGAGAAGAGCTCA 58.089 50.000 17.77 5.19 44.15 4.26
5934 10853 0.765510 AGAGAACACTCCCCCAACAC 59.234 55.000 0.00 0.00 0.00 3.32
5940 10859 2.619074 CCAATGGAAGAGAACACTCCCC 60.619 54.545 0.00 0.00 0.00 4.81
5943 10862 3.064900 AGCCAATGGAAGAGAACACTC 57.935 47.619 2.05 0.00 0.00 3.51
5975 10894 0.539051 GCAGCCTTCTAGAGCTCCAA 59.461 55.000 10.93 0.00 37.18 3.53
6020 10939 3.552684 CCTTCAAGCGCCATTTTTCTTCA 60.553 43.478 2.29 0.00 0.00 3.02
6033 10952 3.058293 TGTGTTCTTATTGCCTTCAAGCG 60.058 43.478 0.00 0.00 35.37 4.68
6037 10956 8.347004 TGAATATTGTGTTCTTATTGCCTTCA 57.653 30.769 0.00 0.00 0.00 3.02
6120 11040 3.873910 ACCGATTTACTCCACAATCCAG 58.126 45.455 0.00 0.00 0.00 3.86
6163 11083 5.293569 GCAGCAATACTACACGGTTATTCTT 59.706 40.000 0.00 0.00 0.00 2.52
6179 11099 4.142403 GCAGAACTACAAATGGCAGCAATA 60.142 41.667 0.00 0.00 0.00 1.90
6333 11258 2.899303 CCATGTGGGGTTTTCTACCT 57.101 50.000 0.00 0.00 46.86 3.08
6385 11310 3.272031 GCAAAGCTGGCCAGAGAC 58.728 61.111 37.21 18.81 0.00 3.36
6430 11355 3.246619 GTGCTACTTCACTGACACTAGC 58.753 50.000 0.00 0.00 34.29 3.42
6438 11363 1.066573 CCTCCTGGTGCTACTTCACTG 60.067 57.143 0.00 0.00 37.16 3.66
6455 12130 6.540914 TGTCCCGATCAATTAACATTAACCTC 59.459 38.462 0.00 0.00 0.00 3.85
6468 12143 3.646162 TGCTACCTATTGTCCCGATCAAT 59.354 43.478 0.00 0.00 38.72 2.57
6475 12150 4.345257 TCTTCAGATGCTACCTATTGTCCC 59.655 45.833 0.00 0.00 0.00 4.46
6575 12260 4.511826 CGTTCTGCCAATTAGGGATCTTAC 59.488 45.833 0.00 0.00 36.98 2.34
6605 12293 2.037772 ACAACACCTCCTCTCACATCAC 59.962 50.000 0.00 0.00 0.00 3.06
6619 12307 1.067915 ACAACACACTGCAACAACACC 60.068 47.619 0.00 0.00 0.00 4.16
6814 12511 3.053019 TGTTAGCATTGGGATGGGATGAA 60.053 43.478 0.00 0.00 33.72 2.57
6875 12572 7.148507 GGACATTGCTCTTCCATTATCTAATCG 60.149 40.741 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.