Multiple sequence alignment - TraesCS4B01G101200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G101200 | chr4B | 100.000 | 6711 | 0 | 0 | 1 | 6711 | 106860931 | 106854221 | 0.000000e+00 | 12393.0 |
1 | TraesCS4B01G101200 | chr4B | 97.761 | 134 | 2 | 1 | 2339 | 2472 | 55926037 | 55925905 | 5.230000e-56 | 230.0 |
2 | TraesCS4B01G101200 | chr4B | 82.609 | 230 | 32 | 6 | 6420 | 6643 | 41862365 | 41862592 | 5.310000e-46 | 196.0 |
3 | TraesCS4B01G101200 | chr4B | 80.349 | 229 | 35 | 6 | 6423 | 6643 | 63976871 | 63977097 | 1.500000e-36 | 165.0 |
4 | TraesCS4B01G101200 | chr4B | 86.842 | 76 | 10 | 0 | 3233 | 3308 | 637342429 | 637342504 | 1.200000e-12 | 86.1 |
5 | TraesCS4B01G101200 | chr4D | 94.973 | 4138 | 125 | 26 | 2604 | 6711 | 74373129 | 74369045 | 0.000000e+00 | 6412.0 |
6 | TraesCS4B01G101200 | chr4D | 93.068 | 1861 | 90 | 25 | 1 | 1830 | 74375715 | 74373863 | 0.000000e+00 | 2686.0 |
7 | TraesCS4B01G101200 | chr4D | 94.371 | 302 | 16 | 1 | 2046 | 2347 | 74373723 | 74373423 | 4.740000e-126 | 462.0 |
8 | TraesCS4B01G101200 | chr4D | 96.324 | 136 | 4 | 1 | 2471 | 2606 | 74373424 | 74373290 | 8.760000e-54 | 222.0 |
9 | TraesCS4B01G101200 | chr4A | 92.092 | 3288 | 161 | 45 | 3219 | 6468 | 513290539 | 513293765 | 0.000000e+00 | 4540.0 |
10 | TraesCS4B01G101200 | chr4A | 91.978 | 1795 | 99 | 24 | 1 | 1769 | 513287343 | 513289118 | 0.000000e+00 | 2475.0 |
11 | TraesCS4B01G101200 | chr4A | 91.175 | 1541 | 98 | 18 | 3427 | 4958 | 644494474 | 644492963 | 0.000000e+00 | 2058.0 |
12 | TraesCS4B01G101200 | chr4A | 90.355 | 705 | 51 | 7 | 2471 | 3162 | 513289698 | 513290398 | 0.000000e+00 | 909.0 |
13 | TraesCS4B01G101200 | chr4A | 89.401 | 434 | 28 | 7 | 1924 | 2347 | 513289274 | 513289699 | 1.280000e-146 | 531.0 |
14 | TraesCS4B01G101200 | chr4A | 83.069 | 189 | 30 | 2 | 6456 | 6643 | 555932845 | 555932658 | 3.220000e-38 | 171.0 |
15 | TraesCS4B01G101200 | chr4A | 82.447 | 188 | 32 | 1 | 6457 | 6643 | 555967225 | 555967038 | 5.390000e-36 | 163.0 |
16 | TraesCS4B01G101200 | chr7A | 92.690 | 684 | 37 | 5 | 3427 | 4110 | 685860761 | 685860091 | 0.000000e+00 | 974.0 |
17 | TraesCS4B01G101200 | chr7A | 93.596 | 203 | 9 | 3 | 4939 | 5141 | 685854715 | 685854517 | 3.930000e-77 | 300.0 |
18 | TraesCS4B01G101200 | chr7A | 91.787 | 207 | 16 | 1 | 4151 | 4357 | 685854918 | 685854713 | 3.060000e-73 | 287.0 |
19 | TraesCS4B01G101200 | chr7A | 95.652 | 138 | 5 | 1 | 2342 | 2479 | 189327627 | 189327491 | 3.150000e-53 | 220.0 |
20 | TraesCS4B01G101200 | chr7A | 89.655 | 87 | 9 | 0 | 1041 | 1127 | 708668687 | 708668601 | 1.980000e-20 | 111.0 |
21 | TraesCS4B01G101200 | chr7A | 86.598 | 97 | 9 | 3 | 3108 | 3202 | 734625410 | 734625316 | 3.310000e-18 | 104.0 |
22 | TraesCS4B01G101200 | chr7D | 84.633 | 449 | 50 | 14 | 4339 | 4783 | 188348290 | 188348723 | 4.810000e-116 | 429.0 |
23 | TraesCS4B01G101200 | chr7D | 86.667 | 120 | 14 | 2 | 1041 | 1159 | 615907052 | 615906934 | 1.520000e-26 | 132.0 |
24 | TraesCS4B01G101200 | chr1B | 89.310 | 290 | 21 | 5 | 3275 | 3558 | 119574433 | 119574148 | 8.280000e-94 | 355.0 |
25 | TraesCS4B01G101200 | chr1B | 93.056 | 144 | 9 | 1 | 2346 | 2488 | 614418979 | 614419122 | 6.820000e-50 | 209.0 |
26 | TraesCS4B01G101200 | chr1B | 86.842 | 76 | 10 | 0 | 3233 | 3308 | 12391923 | 12391998 | 1.200000e-12 | 86.1 |
27 | TraesCS4B01G101200 | chr1D | 82.390 | 318 | 38 | 12 | 6336 | 6643 | 260611637 | 260611946 | 1.860000e-65 | 261.0 |
28 | TraesCS4B01G101200 | chr1A | 82.188 | 320 | 37 | 15 | 6336 | 6643 | 339904878 | 339904567 | 2.400000e-64 | 257.0 |
29 | TraesCS4B01G101200 | chr6D | 86.792 | 212 | 24 | 3 | 3218 | 3427 | 433116432 | 433116641 | 4.050000e-57 | 233.0 |
30 | TraesCS4B01G101200 | chr6B | 98.450 | 129 | 2 | 0 | 2344 | 2472 | 54403663 | 54403535 | 1.880000e-55 | 228.0 |
31 | TraesCS4B01G101200 | chr3D | 96.324 | 136 | 5 | 0 | 2342 | 2477 | 134495872 | 134496007 | 2.440000e-54 | 224.0 |
32 | TraesCS4B01G101200 | chr3D | 85.345 | 116 | 17 | 0 | 5328 | 5443 | 516879587 | 516879472 | 3.290000e-23 | 121.0 |
33 | TraesCS4B01G101200 | chr3D | 86.316 | 95 | 13 | 0 | 3108 | 3202 | 35687821 | 35687727 | 3.310000e-18 | 104.0 |
34 | TraesCS4B01G101200 | chr3D | 86.316 | 95 | 13 | 0 | 3108 | 3202 | 35701221 | 35701315 | 3.310000e-18 | 104.0 |
35 | TraesCS4B01G101200 | chr3A | 97.692 | 130 | 3 | 0 | 2346 | 2475 | 736073299 | 736073170 | 2.440000e-54 | 224.0 |
36 | TraesCS4B01G101200 | chr2D | 96.350 | 137 | 4 | 1 | 2341 | 2476 | 186641974 | 186642110 | 2.440000e-54 | 224.0 |
37 | TraesCS4B01G101200 | chr2D | 84.946 | 93 | 12 | 2 | 3218 | 3308 | 620318414 | 620318506 | 7.170000e-15 | 93.5 |
38 | TraesCS4B01G101200 | chr3B | 96.899 | 129 | 4 | 0 | 2346 | 2474 | 708415342 | 708415214 | 4.080000e-52 | 217.0 |
39 | TraesCS4B01G101200 | chr3B | 84.946 | 93 | 12 | 2 | 3218 | 3308 | 299743955 | 299744047 | 7.170000e-15 | 93.5 |
40 | TraesCS4B01G101200 | chr5B | 90.909 | 154 | 10 | 3 | 2346 | 2499 | 551414380 | 551414231 | 3.170000e-48 | 204.0 |
41 | TraesCS4B01G101200 | chr7B | 85.000 | 120 | 16 | 2 | 1041 | 1159 | 708955029 | 708954911 | 3.290000e-23 | 121.0 |
42 | TraesCS4B01G101200 | chr7B | 84.946 | 93 | 12 | 2 | 3218 | 3308 | 681743975 | 681743883 | 7.170000e-15 | 93.5 |
43 | TraesCS4B01G101200 | chr5D | 84.536 | 97 | 14 | 1 | 3218 | 3313 | 503800082 | 503800178 | 1.990000e-15 | 95.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G101200 | chr4B | 106854221 | 106860931 | 6710 | True | 12393.00 | 12393 | 100.0000 | 1 | 6711 | 1 | chr4B.!!$R2 | 6710 |
1 | TraesCS4B01G101200 | chr4D | 74369045 | 74375715 | 6670 | True | 2445.50 | 6412 | 94.6840 | 1 | 6711 | 4 | chr4D.!!$R1 | 6710 |
2 | TraesCS4B01G101200 | chr4A | 513287343 | 513293765 | 6422 | False | 2113.75 | 4540 | 90.9565 | 1 | 6468 | 4 | chr4A.!!$F1 | 6467 |
3 | TraesCS4B01G101200 | chr4A | 644492963 | 644494474 | 1511 | True | 2058.00 | 2058 | 91.1750 | 3427 | 4958 | 1 | chr4A.!!$R3 | 1531 |
4 | TraesCS4B01G101200 | chr7A | 685860091 | 685860761 | 670 | True | 974.00 | 974 | 92.6900 | 3427 | 4110 | 1 | chr7A.!!$R2 | 683 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
619 | 624 | 0.101040 | TACATAAGGCGACCGAACGG | 59.899 | 55.000 | 11.83 | 11.83 | 42.03 | 4.44 | F |
1885 | 2000 | 0.179056 | CCATTATCGGTGGGCTCGTT | 60.179 | 55.000 | 0.00 | 0.00 | 32.98 | 3.85 | F |
2364 | 2489 | 0.032813 | TACTCCCTCCGTCCGGAAAT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.17 | F |
2365 | 2490 | 0.032813 | ACTCCCTCCGTCCGGAAATA | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 1.40 | F |
2367 | 2492 | 0.032813 | TCCCTCCGTCCGGAAATACT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.12 | F |
2526 | 2651 | 0.463654 | TGCAACGAAGTCTGCTGGTT | 60.464 | 50.000 | 0.00 | 0.00 | 45.00 | 3.67 | F |
4166 | 4602 | 1.655484 | TGATGCCATAGAGTTGTGCG | 58.345 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 | F |
5596 | 6045 | 2.009042 | GCCATCGAGGTTCTTCCACTG | 61.009 | 57.143 | 0.00 | 0.00 | 40.61 | 3.66 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2348 | 2473 | 0.032813 | AGTATTTCCGGACGGAGGGA | 60.033 | 55.000 | 13.64 | 4.95 | 46.06 | 4.20 | R |
2801 | 3097 | 0.388134 | ACGATTGGACGGAGAACACG | 60.388 | 55.000 | 0.00 | 0.00 | 37.61 | 4.49 | R |
4296 | 4734 | 0.443869 | GCATGTGACATCGTGTGGAC | 59.556 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 | R |
4343 | 4781 | 3.355378 | TCCACATGATAGGCAAAAGGTG | 58.645 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 | R |
4415 | 4854 | 9.790344 | AAATCAACATAATGAGGGAGAGATAAG | 57.210 | 33.333 | 0.00 | 0.00 | 31.76 | 1.73 | R |
4650 | 5093 | 3.838244 | TGTTAGTGGCTCAACAGAACT | 57.162 | 42.857 | 0.00 | 0.00 | 31.29 | 3.01 | R |
5704 | 6153 | 1.402968 | CAAAGGAATGTCCATCAGGCG | 59.597 | 52.381 | 0.00 | 0.00 | 39.61 | 5.52 | R |
6569 | 7038 | 2.967599 | TACCTACTGCTGCATCAGTG | 57.032 | 50.000 | 28.75 | 17.50 | 45.95 | 3.66 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
66 | 67 | 5.772393 | TCCATAGTGGTGGATGTTTTAGT | 57.228 | 39.130 | 0.00 | 0.00 | 43.20 | 2.24 |
69 | 70 | 6.670464 | TCCATAGTGGTGGATGTTTTAGTCTA | 59.330 | 38.462 | 0.00 | 0.00 | 43.20 | 2.59 |
152 | 153 | 5.898120 | TCCCCTGACATTCCAATAAAAAGA | 58.102 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
281 | 283 | 6.584488 | TCCAAGCCAAATTTCATGATATTGG | 58.416 | 36.000 | 21.54 | 21.54 | 35.82 | 3.16 |
527 | 531 | 5.836024 | ACTTAATAAGTGGACAAGGGTGA | 57.164 | 39.130 | 4.66 | 0.00 | 41.01 | 4.02 |
550 | 555 | 1.616620 | AATTGTAGCGCGCAATGTTG | 58.383 | 45.000 | 35.10 | 0.00 | 36.75 | 3.33 |
554 | 559 | 1.735018 | TGTAGCGCGCAATGTTGTAAT | 59.265 | 42.857 | 35.10 | 10.92 | 0.00 | 1.89 |
555 | 560 | 2.160615 | TGTAGCGCGCAATGTTGTAATT | 59.839 | 40.909 | 35.10 | 10.33 | 0.00 | 1.40 |
575 | 580 | 6.695292 | AATTGCTTTCGTGTCAATCAAATC | 57.305 | 33.333 | 0.00 | 0.00 | 30.84 | 2.17 |
608 | 613 | 5.836821 | TGAGAGCACACTACTACATAAGG | 57.163 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
609 | 614 | 4.098044 | TGAGAGCACACTACTACATAAGGC | 59.902 | 45.833 | 0.00 | 0.00 | 0.00 | 4.35 |
610 | 615 | 3.066900 | AGAGCACACTACTACATAAGGCG | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 5.52 |
611 | 616 | 3.021695 | AGCACACTACTACATAAGGCGA | 58.978 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
612 | 617 | 3.114065 | GCACACTACTACATAAGGCGAC | 58.886 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
613 | 618 | 3.703420 | CACACTACTACATAAGGCGACC | 58.297 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
614 | 619 | 2.357009 | ACACTACTACATAAGGCGACCG | 59.643 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
616 | 621 | 3.065786 | CACTACTACATAAGGCGACCGAA | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
617 | 622 | 2.573941 | ACTACATAAGGCGACCGAAC | 57.426 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
618 | 623 | 1.202222 | ACTACATAAGGCGACCGAACG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
619 | 624 | 0.101040 | TACATAAGGCGACCGAACGG | 59.899 | 55.000 | 11.83 | 11.83 | 42.03 | 4.44 |
666 | 671 | 9.877178 | AAGAACTAACAAGTATGATGTTCCTAG | 57.123 | 33.333 | 0.00 | 0.00 | 41.11 | 3.02 |
667 | 672 | 7.982354 | AGAACTAACAAGTATGATGTTCCTAGC | 59.018 | 37.037 | 0.00 | 0.00 | 41.11 | 3.42 |
668 | 673 | 6.583562 | ACTAACAAGTATGATGTTCCTAGCC | 58.416 | 40.000 | 0.00 | 0.00 | 41.11 | 3.93 |
670 | 675 | 5.636903 | ACAAGTATGATGTTCCTAGCCAT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
671 | 676 | 6.747414 | ACAAGTATGATGTTCCTAGCCATA | 57.253 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
673 | 678 | 8.435931 | ACAAGTATGATGTTCCTAGCCATATA | 57.564 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
674 | 679 | 8.314751 | ACAAGTATGATGTTCCTAGCCATATAC | 58.685 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
675 | 680 | 8.535335 | CAAGTATGATGTTCCTAGCCATATACT | 58.465 | 37.037 | 0.00 | 0.00 | 32.08 | 2.12 |
677 | 682 | 8.119246 | AGTATGATGTTCCTAGCCATATACTCT | 58.881 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
678 | 683 | 9.409918 | GTATGATGTTCCTAGCCATATACTCTA | 57.590 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
680 | 685 | 8.901472 | TGATGTTCCTAGCCATATACTCTATT | 57.099 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
682 | 687 | 9.593134 | GATGTTCCTAGCCATATACTCTATTTG | 57.407 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
685 | 696 | 7.392494 | TCCTAGCCATATACTCTATTTGTCG | 57.608 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
706 | 717 | 4.104776 | CGACACTCAAAACTGCACAAAAT | 58.895 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
711 | 722 | 7.264221 | ACACTCAAAACTGCACAAAATAATCA | 58.736 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
722 | 733 | 8.242085 | TGCACAAAATAATCATAGCACAAAAG | 57.758 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
732 | 743 | 4.523943 | TCATAGCACAAAAGCTCCAACAAT | 59.476 | 37.500 | 0.00 | 0.00 | 45.26 | 2.71 |
733 | 744 | 5.709631 | TCATAGCACAAAAGCTCCAACAATA | 59.290 | 36.000 | 0.00 | 0.00 | 45.26 | 1.90 |
734 | 745 | 4.935352 | AGCACAAAAGCTCCAACAATAA | 57.065 | 36.364 | 0.00 | 0.00 | 42.18 | 1.40 |
735 | 746 | 5.473066 | AGCACAAAAGCTCCAACAATAAT | 57.527 | 34.783 | 0.00 | 0.00 | 42.18 | 1.28 |
762 | 776 | 4.285517 | TGACAAGAGGAATCAAGCTCTCTT | 59.714 | 41.667 | 7.17 | 7.17 | 44.49 | 2.85 |
828 | 843 | 4.323477 | TGTTTCCACGAGGGCCCG | 62.323 | 66.667 | 18.44 | 8.21 | 36.21 | 6.13 |
1140 | 1159 | 3.160047 | CTCAGGAGGGCCGCAGAT | 61.160 | 66.667 | 10.15 | 0.00 | 39.96 | 2.90 |
1215 | 1234 | 1.919956 | CTTGCTTGCTTCCTCTGGCG | 61.920 | 60.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1232 | 1251 | 2.184830 | CGTCTGGATCTCGCCGGTA | 61.185 | 63.158 | 1.90 | 0.00 | 35.72 | 4.02 |
1353 | 1372 | 2.669133 | TTGGTGGGAGGGATCTGCG | 61.669 | 63.158 | 0.00 | 0.00 | 31.58 | 5.18 |
1356 | 1375 | 3.785859 | TGGGAGGGATCTGCGTGC | 61.786 | 66.667 | 0.00 | 0.00 | 31.58 | 5.34 |
1485 | 1513 | 4.900635 | TGCAACTTCTCTGGAACTTTTC | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
1497 | 1526 | 2.480802 | GGAACTTTTCCTTGCTCTCGTC | 59.519 | 50.000 | 0.00 | 0.00 | 46.57 | 4.20 |
1533 | 1563 | 1.673920 | GTGGAGTTGACGCTGGAAAAA | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
1589 | 1619 | 2.661066 | TAGATTTGGCCGCGTGGGA | 61.661 | 57.895 | 18.41 | 0.00 | 38.47 | 4.37 |
1608 | 1645 | 2.368875 | GGAAGTCCAGTTGAGTCCAGAA | 59.631 | 50.000 | 0.00 | 0.00 | 35.64 | 3.02 |
1662 | 1699 | 4.248859 | TGGCTTGATTCTCTTCTCTTTCG | 58.751 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
1704 | 1741 | 3.595709 | TGATTTGGTTTCGTCGTTGAC | 57.404 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
1748 | 1785 | 1.954382 | GTTTTGGTCCGAAAGCTTCCT | 59.046 | 47.619 | 4.36 | 0.00 | 0.00 | 3.36 |
1756 | 1793 | 4.229876 | GTCCGAAAGCTTCCTTGAAAATG | 58.770 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
1789 | 1863 | 5.437289 | TCTCGCATTTGTTTCATGTCTTT | 57.563 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
1809 | 1884 | 6.019559 | GTCTTTGTTTCTCTTGTTGGAATTGC | 60.020 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
1812 | 1887 | 3.896648 | TTCTCTTGTTGGAATTGCGAC | 57.103 | 42.857 | 10.27 | 10.27 | 0.00 | 5.19 |
1824 | 1899 | 0.881796 | ATTGCGACGAGTGAGTCTGA | 59.118 | 50.000 | 0.00 | 0.00 | 38.90 | 3.27 |
1830 | 1905 | 2.428491 | GACGAGTGAGTCTGAGGAAGA | 58.572 | 52.381 | 0.00 | 0.00 | 38.09 | 2.87 |
1832 | 1907 | 2.224670 | ACGAGTGAGTCTGAGGAAGAGT | 60.225 | 50.000 | 0.00 | 0.00 | 41.56 | 3.24 |
1851 | 1966 | 7.814264 | AAGAGTTCTTCCATGGCTAAATATG | 57.186 | 36.000 | 6.96 | 0.00 | 0.00 | 1.78 |
1852 | 1967 | 5.767168 | AGAGTTCTTCCATGGCTAAATATGC | 59.233 | 40.000 | 6.96 | 0.00 | 0.00 | 3.14 |
1853 | 1968 | 5.699143 | AGTTCTTCCATGGCTAAATATGCT | 58.301 | 37.500 | 6.96 | 0.00 | 0.00 | 3.79 |
1854 | 1969 | 6.131961 | AGTTCTTCCATGGCTAAATATGCTT | 58.868 | 36.000 | 6.96 | 0.00 | 0.00 | 3.91 |
1855 | 1970 | 7.290061 | AGTTCTTCCATGGCTAAATATGCTTA | 58.710 | 34.615 | 6.96 | 0.00 | 0.00 | 3.09 |
1856 | 1971 | 7.946776 | AGTTCTTCCATGGCTAAATATGCTTAT | 59.053 | 33.333 | 6.96 | 0.00 | 0.00 | 1.73 |
1857 | 1972 | 7.692460 | TCTTCCATGGCTAAATATGCTTATG | 57.308 | 36.000 | 6.96 | 0.00 | 0.00 | 1.90 |
1858 | 1973 | 7.460910 | TCTTCCATGGCTAAATATGCTTATGA | 58.539 | 34.615 | 6.96 | 0.00 | 31.72 | 2.15 |
1859 | 1974 | 7.944000 | TCTTCCATGGCTAAATATGCTTATGAA | 59.056 | 33.333 | 6.96 | 0.00 | 31.72 | 2.57 |
1860 | 1975 | 8.654485 | TTCCATGGCTAAATATGCTTATGAAT | 57.346 | 30.769 | 6.96 | 0.00 | 31.72 | 2.57 |
1861 | 1976 | 8.058667 | TCCATGGCTAAATATGCTTATGAATG | 57.941 | 34.615 | 6.96 | 0.00 | 31.72 | 2.67 |
1862 | 1977 | 7.123098 | TCCATGGCTAAATATGCTTATGAATGG | 59.877 | 37.037 | 6.96 | 0.00 | 31.72 | 3.16 |
1863 | 1978 | 7.093640 | CCATGGCTAAATATGCTTATGAATGGT | 60.094 | 37.037 | 0.00 | 0.00 | 31.72 | 3.55 |
1864 | 1979 | 7.218228 | TGGCTAAATATGCTTATGAATGGTG | 57.782 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1865 | 1980 | 6.777091 | TGGCTAAATATGCTTATGAATGGTGT | 59.223 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
1866 | 1981 | 7.040478 | TGGCTAAATATGCTTATGAATGGTGTC | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
1867 | 1982 | 7.308435 | GCTAAATATGCTTATGAATGGTGTCC | 58.692 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
1868 | 1983 | 7.040478 | GCTAAATATGCTTATGAATGGTGTCCA | 60.040 | 37.037 | 0.00 | 0.00 | 38.19 | 4.02 |
1878 | 1993 | 2.638480 | ATGGTGTCCATTATCGGTGG | 57.362 | 50.000 | 0.00 | 0.00 | 42.23 | 4.61 |
1879 | 1994 | 0.544223 | TGGTGTCCATTATCGGTGGG | 59.456 | 55.000 | 0.00 | 0.00 | 37.34 | 4.61 |
1880 | 1995 | 0.818040 | GGTGTCCATTATCGGTGGGC | 60.818 | 60.000 | 0.00 | 0.00 | 41.73 | 5.36 |
1881 | 1996 | 0.180406 | GTGTCCATTATCGGTGGGCT | 59.820 | 55.000 | 0.00 | 0.00 | 41.89 | 5.19 |
1882 | 1997 | 0.468226 | TGTCCATTATCGGTGGGCTC | 59.532 | 55.000 | 0.00 | 0.00 | 41.89 | 4.70 |
1883 | 1998 | 0.600255 | GTCCATTATCGGTGGGCTCG | 60.600 | 60.000 | 0.00 | 0.00 | 38.32 | 5.03 |
1884 | 1999 | 1.046472 | TCCATTATCGGTGGGCTCGT | 61.046 | 55.000 | 0.00 | 0.00 | 37.34 | 4.18 |
1885 | 2000 | 0.179056 | CCATTATCGGTGGGCTCGTT | 60.179 | 55.000 | 0.00 | 0.00 | 32.98 | 3.85 |
1886 | 2001 | 0.937304 | CATTATCGGTGGGCTCGTTG | 59.063 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1887 | 2002 | 0.179056 | ATTATCGGTGGGCTCGTTGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1888 | 2003 | 2.246761 | TTATCGGTGGGCTCGTTGGG | 62.247 | 60.000 | 0.00 | 0.00 | 0.00 | 4.12 |
1890 | 2005 | 4.760047 | CGGTGGGCTCGTTGGGAG | 62.760 | 72.222 | 0.00 | 0.00 | 46.06 | 4.30 |
1891 | 2006 | 3.319198 | GGTGGGCTCGTTGGGAGA | 61.319 | 66.667 | 0.00 | 0.00 | 46.23 | 3.71 |
1892 | 2007 | 2.266055 | GTGGGCTCGTTGGGAGAG | 59.734 | 66.667 | 0.00 | 0.00 | 46.23 | 3.20 |
1893 | 2008 | 2.119611 | TGGGCTCGTTGGGAGAGA | 59.880 | 61.111 | 0.00 | 0.00 | 46.23 | 3.10 |
1894 | 2009 | 1.535444 | TGGGCTCGTTGGGAGAGAA | 60.535 | 57.895 | 0.00 | 0.00 | 46.23 | 2.87 |
1895 | 2010 | 0.909610 | TGGGCTCGTTGGGAGAGAAT | 60.910 | 55.000 | 0.00 | 0.00 | 46.23 | 2.40 |
1896 | 2011 | 1.120530 | GGGCTCGTTGGGAGAGAATA | 58.879 | 55.000 | 0.00 | 0.00 | 46.23 | 1.75 |
1897 | 2012 | 1.202545 | GGGCTCGTTGGGAGAGAATAC | 60.203 | 57.143 | 0.00 | 0.00 | 46.23 | 1.89 |
1898 | 2013 | 1.757699 | GGCTCGTTGGGAGAGAATACT | 59.242 | 52.381 | 0.00 | 0.00 | 46.23 | 2.12 |
1899 | 2014 | 2.482142 | GGCTCGTTGGGAGAGAATACTG | 60.482 | 54.545 | 0.00 | 0.00 | 46.23 | 2.74 |
1900 | 2015 | 2.166664 | GCTCGTTGGGAGAGAATACTGT | 59.833 | 50.000 | 0.00 | 0.00 | 46.23 | 3.55 |
1901 | 2016 | 3.368531 | GCTCGTTGGGAGAGAATACTGTT | 60.369 | 47.826 | 0.00 | 0.00 | 46.23 | 3.16 |
1902 | 2017 | 4.822026 | CTCGTTGGGAGAGAATACTGTTT | 58.178 | 43.478 | 0.00 | 0.00 | 46.23 | 2.83 |
1903 | 2018 | 5.623824 | GCTCGTTGGGAGAGAATACTGTTTA | 60.624 | 44.000 | 0.00 | 0.00 | 46.23 | 2.01 |
1904 | 2019 | 5.962433 | TCGTTGGGAGAGAATACTGTTTAG | 58.038 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
1905 | 2020 | 5.713389 | TCGTTGGGAGAGAATACTGTTTAGA | 59.287 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1906 | 2021 | 6.380274 | TCGTTGGGAGAGAATACTGTTTAGAT | 59.620 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
1907 | 2022 | 7.558807 | TCGTTGGGAGAGAATACTGTTTAGATA | 59.441 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
1908 | 2023 | 7.863375 | CGTTGGGAGAGAATACTGTTTAGATAG | 59.137 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
1909 | 2024 | 8.915036 | GTTGGGAGAGAATACTGTTTAGATAGA | 58.085 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
1910 | 2025 | 9.488762 | TTGGGAGAGAATACTGTTTAGATAGAA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
1911 | 2026 | 9.488762 | TGGGAGAGAATACTGTTTAGATAGAAA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1912 | 2027 | 9.752961 | GGGAGAGAATACTGTTTAGATAGAAAC | 57.247 | 37.037 | 0.00 | 0.00 | 39.35 | 2.78 |
1921 | 2036 | 8.316640 | ACTGTTTAGATAGAAACTCTTGCTTG | 57.683 | 34.615 | 1.22 | 0.00 | 39.57 | 4.01 |
1922 | 2037 | 7.095017 | ACTGTTTAGATAGAAACTCTTGCTTGC | 60.095 | 37.037 | 1.22 | 0.00 | 39.57 | 4.01 |
1923 | 2038 | 6.710295 | TGTTTAGATAGAAACTCTTGCTTGCA | 59.290 | 34.615 | 0.00 | 0.00 | 39.57 | 4.08 |
1924 | 2039 | 7.228507 | TGTTTAGATAGAAACTCTTGCTTGCAA | 59.771 | 33.333 | 7.83 | 7.83 | 39.57 | 4.08 |
1925 | 2040 | 7.928307 | TTAGATAGAAACTCTTGCTTGCAAT | 57.072 | 32.000 | 8.55 | 0.00 | 0.00 | 3.56 |
1926 | 2041 | 9.448438 | TTTAGATAGAAACTCTTGCTTGCAATA | 57.552 | 29.630 | 8.55 | 1.02 | 0.00 | 1.90 |
1939 | 2054 | 4.828387 | TGCTTGCAATATGCTTATGGATGA | 59.172 | 37.500 | 0.00 | 0.00 | 45.31 | 2.92 |
1963 | 2078 | 1.651987 | CATTATCGGTGGCTCGTTGT | 58.348 | 50.000 | 1.40 | 0.00 | 0.00 | 3.32 |
1989 | 2104 | 6.402222 | AGAGAATCACTGTCCACATAGAAAC | 58.598 | 40.000 | 0.00 | 0.00 | 37.82 | 2.78 |
1991 | 2106 | 6.402222 | AGAATCACTGTCCACATAGAAACTC | 58.598 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1995 | 2110 | 4.153117 | CACTGTCCACATAGAAACTCTTGC | 59.847 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
2013 | 2128 | 3.745332 | TGCTTGCAATATGTCTTGTCG | 57.255 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
2021 | 2136 | 3.710326 | ATATGTCTTGTCGCGAGCTTA | 57.290 | 42.857 | 10.24 | 1.17 | 0.00 | 3.09 |
2044 | 2159 | 3.200825 | CAGGTCAAACTATCTGATGGGGT | 59.799 | 47.826 | 5.97 | 0.00 | 0.00 | 4.95 |
2057 | 2172 | 4.971282 | TCTGATGGGGTCACTGATCTTTAT | 59.029 | 41.667 | 0.00 | 0.00 | 32.22 | 1.40 |
2085 | 2200 | 7.656948 | TGGATTTCTGTTTTGTTGGATTGATTC | 59.343 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2088 | 2203 | 7.949903 | TTCTGTTTTGTTGGATTGATTCATG | 57.050 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2097 | 2216 | 8.905660 | TGTTGGATTGATTCATGTCAAATTTT | 57.094 | 26.923 | 3.16 | 0.00 | 41.09 | 1.82 |
2099 | 2218 | 7.367159 | TGGATTGATTCATGTCAAATTTTGC | 57.633 | 32.000 | 4.19 | 1.16 | 41.09 | 3.68 |
2163 | 2282 | 3.064545 | GCGCTAGTTGAGATCTTTTGCAT | 59.935 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
2209 | 2328 | 8.562892 | CACATTCTGTTAAAGAGACAATGACTT | 58.437 | 33.333 | 0.00 | 0.00 | 35.91 | 3.01 |
2214 | 2333 | 8.761497 | TCTGTTAAAGAGACAATGACTTAAACG | 58.239 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
2217 | 2336 | 4.992381 | AGAGACAATGACTTAAACGTGC | 57.008 | 40.909 | 0.00 | 0.00 | 0.00 | 5.34 |
2228 | 2348 | 3.566742 | ACTTAAACGTGCCCTTTTCGAAT | 59.433 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
2347 | 2472 | 7.573968 | AATGATCAATTTCCCAGCTTACTAC | 57.426 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2348 | 2473 | 6.313519 | TGATCAATTTCCCAGCTTACTACT | 57.686 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2349 | 2474 | 6.349300 | TGATCAATTTCCCAGCTTACTACTC | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2350 | 2475 | 5.099042 | TCAATTTCCCAGCTTACTACTCC | 57.901 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2351 | 2476 | 4.080526 | TCAATTTCCCAGCTTACTACTCCC | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2352 | 2477 | 2.942604 | TTCCCAGCTTACTACTCCCT | 57.057 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2353 | 2478 | 2.456073 | TCCCAGCTTACTACTCCCTC | 57.544 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2354 | 2479 | 1.063114 | TCCCAGCTTACTACTCCCTCC | 60.063 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2355 | 2480 | 1.033574 | CCAGCTTACTACTCCCTCCG | 58.966 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2356 | 2481 | 1.685491 | CCAGCTTACTACTCCCTCCGT | 60.685 | 57.143 | 0.00 | 0.00 | 0.00 | 4.69 |
2357 | 2482 | 1.677052 | CAGCTTACTACTCCCTCCGTC | 59.323 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
2358 | 2483 | 1.031235 | GCTTACTACTCCCTCCGTCC | 58.969 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2359 | 2484 | 1.307097 | CTTACTACTCCCTCCGTCCG | 58.693 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2360 | 2485 | 0.107017 | TTACTACTCCCTCCGTCCGG | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2361 | 2486 | 0.982852 | TACTACTCCCTCCGTCCGGA | 60.983 | 60.000 | 0.00 | 0.00 | 42.90 | 5.14 |
2362 | 2487 | 1.077212 | CTACTCCCTCCGTCCGGAA | 60.077 | 63.158 | 5.23 | 0.00 | 44.66 | 4.30 |
2363 | 2488 | 0.682209 | CTACTCCCTCCGTCCGGAAA | 60.682 | 60.000 | 5.23 | 0.00 | 44.66 | 3.13 |
2364 | 2489 | 0.032813 | TACTCCCTCCGTCCGGAAAT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.17 |
2365 | 2490 | 0.032813 | ACTCCCTCCGTCCGGAAATA | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 1.40 |
2366 | 2491 | 0.388294 | CTCCCTCCGTCCGGAAATAC | 59.612 | 60.000 | 5.23 | 0.00 | 44.66 | 1.89 |
2367 | 2492 | 0.032813 | TCCCTCCGTCCGGAAATACT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.12 |
2368 | 2493 | 0.828677 | CCCTCCGTCCGGAAATACTT | 59.171 | 55.000 | 5.23 | 0.00 | 44.66 | 2.24 |
2369 | 2494 | 1.472728 | CCCTCCGTCCGGAAATACTTG | 60.473 | 57.143 | 5.23 | 0.00 | 44.66 | 3.16 |
2370 | 2495 | 1.206371 | CCTCCGTCCGGAAATACTTGT | 59.794 | 52.381 | 5.23 | 0.00 | 44.66 | 3.16 |
2371 | 2496 | 2.537401 | CTCCGTCCGGAAATACTTGTC | 58.463 | 52.381 | 5.23 | 0.00 | 44.66 | 3.18 |
2372 | 2497 | 1.894466 | TCCGTCCGGAAATACTTGTCA | 59.106 | 47.619 | 5.23 | 0.00 | 42.05 | 3.58 |
2373 | 2498 | 2.498481 | TCCGTCCGGAAATACTTGTCAT | 59.502 | 45.455 | 5.23 | 0.00 | 42.05 | 3.06 |
2374 | 2499 | 2.864343 | CCGTCCGGAAATACTTGTCATC | 59.136 | 50.000 | 5.23 | 0.00 | 37.50 | 2.92 |
2375 | 2500 | 3.517602 | CGTCCGGAAATACTTGTCATCA | 58.482 | 45.455 | 5.23 | 0.00 | 0.00 | 3.07 |
2376 | 2501 | 3.930229 | CGTCCGGAAATACTTGTCATCAA | 59.070 | 43.478 | 5.23 | 0.00 | 0.00 | 2.57 |
2377 | 2502 | 4.390603 | CGTCCGGAAATACTTGTCATCAAA | 59.609 | 41.667 | 5.23 | 0.00 | 32.87 | 2.69 |
2378 | 2503 | 5.106869 | CGTCCGGAAATACTTGTCATCAAAA | 60.107 | 40.000 | 5.23 | 0.00 | 32.87 | 2.44 |
2379 | 2504 | 6.403200 | CGTCCGGAAATACTTGTCATCAAAAT | 60.403 | 38.462 | 5.23 | 0.00 | 32.87 | 1.82 |
2380 | 2505 | 6.747280 | GTCCGGAAATACTTGTCATCAAAATG | 59.253 | 38.462 | 5.23 | 0.00 | 32.87 | 2.32 |
2381 | 2506 | 6.657117 | TCCGGAAATACTTGTCATCAAAATGA | 59.343 | 34.615 | 0.00 | 0.00 | 39.63 | 2.57 |
2382 | 2507 | 7.175816 | TCCGGAAATACTTGTCATCAAAATGAA | 59.824 | 33.333 | 0.00 | 0.00 | 43.42 | 2.57 |
2383 | 2508 | 7.975616 | CCGGAAATACTTGTCATCAAAATGAAT | 59.024 | 33.333 | 0.00 | 0.00 | 43.42 | 2.57 |
2391 | 2516 | 8.096414 | ACTTGTCATCAAAATGAATAAAAGGGG | 58.904 | 33.333 | 0.00 | 0.00 | 43.42 | 4.79 |
2392 | 2517 | 7.789202 | TGTCATCAAAATGAATAAAAGGGGA | 57.211 | 32.000 | 0.00 | 0.00 | 43.42 | 4.81 |
2393 | 2518 | 8.378115 | TGTCATCAAAATGAATAAAAGGGGAT | 57.622 | 30.769 | 0.00 | 0.00 | 43.42 | 3.85 |
2394 | 2519 | 8.259411 | TGTCATCAAAATGAATAAAAGGGGATG | 58.741 | 33.333 | 0.00 | 0.00 | 43.42 | 3.51 |
2395 | 2520 | 8.260114 | GTCATCAAAATGAATAAAAGGGGATGT | 58.740 | 33.333 | 0.00 | 0.00 | 43.42 | 3.06 |
2396 | 2521 | 9.486123 | TCATCAAAATGAATAAAAGGGGATGTA | 57.514 | 29.630 | 0.00 | 0.00 | 38.97 | 2.29 |
2399 | 2524 | 9.713684 | TCAAAATGAATAAAAGGGGATGTATCT | 57.286 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
2404 | 2529 | 8.561536 | TGAATAAAAGGGGATGTATCTAGACA | 57.438 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2405 | 2530 | 9.170890 | TGAATAAAAGGGGATGTATCTAGACAT | 57.829 | 33.333 | 0.00 | 0.00 | 42.82 | 3.06 |
2413 | 2538 | 9.845214 | AGGGGATGTATCTAGACATATTTTAGT | 57.155 | 33.333 | 0.00 | 0.00 | 40.18 | 2.24 |
2451 | 2576 | 9.918630 | CTCTTTTTATCCATTTTGATGACAAGT | 57.081 | 29.630 | 0.00 | 0.00 | 37.32 | 3.16 |
2458 | 2583 | 8.915871 | ATCCATTTTGATGACAAGTATTTTCG | 57.084 | 30.769 | 0.00 | 0.00 | 37.32 | 3.46 |
2459 | 2584 | 7.312154 | TCCATTTTGATGACAAGTATTTTCGG | 58.688 | 34.615 | 0.00 | 0.00 | 37.32 | 4.30 |
2460 | 2585 | 7.175816 | TCCATTTTGATGACAAGTATTTTCGGA | 59.824 | 33.333 | 0.00 | 0.00 | 37.32 | 4.55 |
2461 | 2586 | 7.273381 | CCATTTTGATGACAAGTATTTTCGGAC | 59.727 | 37.037 | 0.00 | 0.00 | 37.32 | 4.79 |
2462 | 2587 | 6.869315 | TTTGATGACAAGTATTTTCGGACA | 57.131 | 33.333 | 0.00 | 0.00 | 37.32 | 4.02 |
2463 | 2588 | 6.480524 | TTGATGACAAGTATTTTCGGACAG | 57.519 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
2464 | 2589 | 5.789521 | TGATGACAAGTATTTTCGGACAGA | 58.210 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2465 | 2590 | 5.869344 | TGATGACAAGTATTTTCGGACAGAG | 59.131 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2466 | 2591 | 4.566004 | TGACAAGTATTTTCGGACAGAGG | 58.434 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
2467 | 2592 | 3.933332 | GACAAGTATTTTCGGACAGAGGG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2468 | 2593 | 3.581332 | ACAAGTATTTTCGGACAGAGGGA | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2469 | 2594 | 4.184629 | CAAGTATTTTCGGACAGAGGGAG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2470 | 2595 | 3.442076 | AGTATTTTCGGACAGAGGGAGT | 58.558 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2471 | 2596 | 4.607239 | AGTATTTTCGGACAGAGGGAGTA | 58.393 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2487 | 2612 | 8.047310 | CAGAGGGAGTATTTGGTATACAACTTT | 58.953 | 37.037 | 5.01 | 0.00 | 39.19 | 2.66 |
2526 | 2651 | 0.463654 | TGCAACGAAGTCTGCTGGTT | 60.464 | 50.000 | 0.00 | 0.00 | 45.00 | 3.67 |
2801 | 3097 | 6.899393 | TGCTTTATCACATATTTGGGATCC | 57.101 | 37.500 | 3.99 | 1.92 | 42.51 | 3.36 |
2807 | 3103 | 4.196193 | TCACATATTTGGGATCCGTGTTC | 58.804 | 43.478 | 5.45 | 0.00 | 27.50 | 3.18 |
2836 | 3132 | 2.654749 | TCGTAGCATGTCTTGTCTGG | 57.345 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3031 | 3331 | 6.006449 | AGGAGAGACTAACAATTTGCAATGT | 58.994 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3142 | 3447 | 5.542616 | AGAGAGCAAATGAATTCTTGTCG | 57.457 | 39.130 | 7.05 | 0.00 | 0.00 | 4.35 |
3205 | 3510 | 6.721318 | TGTTTGCTGTTCTTAGGGAATAGAT | 58.279 | 36.000 | 6.36 | 0.00 | 43.10 | 1.98 |
3660 | 4074 | 4.454504 | AGCCAGGTATTTACAACTGAAACG | 59.545 | 41.667 | 0.00 | 0.00 | 32.86 | 3.60 |
3759 | 4173 | 4.937620 | TCTCAGCTTTTCTTTCATATGCGT | 59.062 | 37.500 | 0.00 | 0.00 | 0.00 | 5.24 |
4166 | 4602 | 1.655484 | TGATGCCATAGAGTTGTGCG | 58.345 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
4252 | 4689 | 5.299028 | TCAACAGTGCATTAACATGACAGTT | 59.701 | 36.000 | 0.00 | 0.00 | 35.55 | 3.16 |
4269 | 4706 | 5.045651 | TGACAGTTATCACATCACCCAAGAT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
4343 | 4781 | 4.326255 | CCAACAGGGCATCACCTC | 57.674 | 61.111 | 0.00 | 0.00 | 39.34 | 3.85 |
4425 | 4866 | 6.993786 | AGTTTTAGCTTTGCTTATCTCTCC | 57.006 | 37.500 | 0.00 | 0.00 | 40.44 | 3.71 |
4477 | 4918 | 7.640852 | AGCATATACACTATATGTAGTAGCGC | 58.359 | 38.462 | 0.00 | 0.00 | 47.00 | 5.92 |
4597 | 5040 | 9.239551 | AGGTTAATAAGGAATGTTCTAACAACC | 57.760 | 33.333 | 0.00 | 6.92 | 43.03 | 3.77 |
4651 | 5094 | 7.951530 | ATGTTTTCTATTTGGCACTCAAAAG | 57.048 | 32.000 | 0.00 | 0.00 | 46.93 | 2.27 |
5001 | 5448 | 6.814076 | AAATAACTCTCACGAATCACGATC | 57.186 | 37.500 | 0.00 | 0.00 | 45.77 | 3.69 |
5008 | 5455 | 4.338400 | TCTCACGAATCACGATCATAAGGT | 59.662 | 41.667 | 0.00 | 0.00 | 45.77 | 3.50 |
5041 | 5488 | 6.662616 | CATATAGTGCCACTGAAATTGTAGC | 58.337 | 40.000 | 7.83 | 0.00 | 0.00 | 3.58 |
5103 | 5550 | 6.672593 | ACCATTGTAATTGGACCACTATGAT | 58.327 | 36.000 | 0.00 | 0.00 | 30.23 | 2.45 |
5104 | 5551 | 7.811282 | ACCATTGTAATTGGACCACTATGATA | 58.189 | 34.615 | 0.00 | 0.00 | 30.23 | 2.15 |
5105 | 5552 | 8.278639 | ACCATTGTAATTGGACCACTATGATAA | 58.721 | 33.333 | 0.00 | 0.00 | 30.23 | 1.75 |
5106 | 5553 | 8.786898 | CCATTGTAATTGGACCACTATGATAAG | 58.213 | 37.037 | 0.00 | 0.00 | 30.23 | 1.73 |
5312 | 5761 | 3.087781 | GCCAGAATTTTCTCCTCAGCTT | 58.912 | 45.455 | 0.00 | 0.00 | 34.74 | 3.74 |
5458 | 5907 | 2.496070 | AGTATGTCACGAGCTTAGCCAA | 59.504 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
5463 | 5912 | 4.513442 | TGTCACGAGCTTAGCCAATTTAT | 58.487 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
5596 | 6045 | 2.009042 | GCCATCGAGGTTCTTCCACTG | 61.009 | 57.143 | 0.00 | 0.00 | 40.61 | 3.66 |
5819 | 6268 | 6.234177 | ACTGAACTTGGAGGTTTTATCTCAG | 58.766 | 40.000 | 0.00 | 0.00 | 33.18 | 3.35 |
5912 | 6376 | 5.546621 | TTATAAGGAGAAACGAGGGATGG | 57.453 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
5957 | 6421 | 2.970640 | GGATGGTTACTCGGGAATACCT | 59.029 | 50.000 | 0.00 | 0.00 | 36.97 | 3.08 |
5974 | 6438 | 5.836024 | ATACCTACCAGTTCTGGAAAACA | 57.164 | 39.130 | 23.45 | 7.54 | 0.00 | 2.83 |
6147 | 6613 | 6.496743 | ACCTATATCATAAATTGCTGCCCAT | 58.503 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
6209 | 6675 | 2.004583 | TTTGGTAGACAATCGGCGAG | 57.995 | 50.000 | 17.22 | 4.99 | 39.21 | 5.03 |
6270 | 6739 | 4.320935 | GGGTCACTGCGTTATGACATTTTT | 60.321 | 41.667 | 14.27 | 0.00 | 45.83 | 1.94 |
6501 | 6970 | 6.680378 | GCAAGAAGTGTGATGTTACAAAAGGT | 60.680 | 38.462 | 0.00 | 0.00 | 31.36 | 3.50 |
6569 | 7038 | 7.916552 | ACAACAGAATTAATGTATCGTTAGGC | 58.083 | 34.615 | 0.00 | 0.00 | 0.00 | 3.93 |
6589 | 7058 | 3.465742 | CACTGATGCAGCAGTAGGTAT | 57.534 | 47.619 | 34.92 | 11.07 | 46.80 | 2.73 |
6591 | 7060 | 4.948847 | CACTGATGCAGCAGTAGGTATAA | 58.051 | 43.478 | 34.92 | 0.00 | 46.80 | 0.98 |
6600 | 7069 | 8.595362 | TGCAGCAGTAGGTATAATATGAGTAT | 57.405 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
6602 | 7071 | 8.687242 | GCAGCAGTAGGTATAATATGAGTATGA | 58.313 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
52 | 53 | 6.887626 | TTGGTTTAGACTAAAACATCCACC | 57.112 | 37.500 | 23.03 | 13.11 | 44.10 | 4.61 |
66 | 67 | 8.792633 | GTGCTATATATGGCAATTTGGTTTAGA | 58.207 | 33.333 | 23.50 | 0.00 | 45.91 | 2.10 |
69 | 70 | 7.601705 | AGTGCTATATATGGCAATTTGGTTT | 57.398 | 32.000 | 23.50 | 2.14 | 45.91 | 3.27 |
130 | 131 | 6.603940 | TTCTTTTTATTGGAATGTCAGGGG | 57.396 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
281 | 283 | 5.355910 | TGTTTAGGTTCCTCAACAACACTTC | 59.644 | 40.000 | 13.95 | 0.00 | 33.70 | 3.01 |
480 | 484 | 5.922960 | ATGTAGGACCCAATTAAGGCATA | 57.077 | 39.130 | 0.00 | 0.00 | 0.00 | 3.14 |
533 | 537 | 1.149148 | TACAACATTGCGCGCTACAA | 58.851 | 45.000 | 33.29 | 19.10 | 0.00 | 2.41 |
534 | 538 | 1.149148 | TTACAACATTGCGCGCTACA | 58.851 | 45.000 | 33.29 | 16.72 | 0.00 | 2.74 |
535 | 539 | 2.452006 | ATTACAACATTGCGCGCTAC | 57.548 | 45.000 | 33.29 | 3.49 | 0.00 | 3.58 |
544 | 549 | 5.826586 | TGACACGAAAGCAATTACAACATT | 58.173 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
550 | 555 | 6.984740 | TTTGATTGACACGAAAGCAATTAC | 57.015 | 33.333 | 0.00 | 0.00 | 33.36 | 1.89 |
554 | 559 | 4.545610 | GGATTTGATTGACACGAAAGCAA | 58.454 | 39.130 | 0.00 | 0.00 | 31.52 | 3.91 |
555 | 560 | 3.057596 | GGGATTTGATTGACACGAAAGCA | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
575 | 580 | 4.458397 | AGTGTGCTCTCAATCATTATGGG | 58.542 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
608 | 613 | 0.236449 | AATTTTCACCGTTCGGTCGC | 59.764 | 50.000 | 14.16 | 0.00 | 36.17 | 5.19 |
609 | 614 | 1.399215 | CCAATTTTCACCGTTCGGTCG | 60.399 | 52.381 | 14.16 | 10.05 | 36.17 | 4.79 |
610 | 615 | 1.664874 | GCCAATTTTCACCGTTCGGTC | 60.665 | 52.381 | 14.16 | 0.00 | 36.17 | 4.79 |
611 | 616 | 0.312729 | GCCAATTTTCACCGTTCGGT | 59.687 | 50.000 | 11.27 | 11.27 | 39.42 | 4.69 |
612 | 617 | 0.727793 | CGCCAATTTTCACCGTTCGG | 60.728 | 55.000 | 9.81 | 9.81 | 0.00 | 4.30 |
613 | 618 | 0.727793 | CCGCCAATTTTCACCGTTCG | 60.728 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
614 | 619 | 0.312729 | ACCGCCAATTTTCACCGTTC | 59.687 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
616 | 621 | 1.104577 | ACACCGCCAATTTTCACCGT | 61.105 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
617 | 622 | 0.386731 | GACACCGCCAATTTTCACCG | 60.387 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
618 | 623 | 0.038618 | GGACACCGCCAATTTTCACC | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
619 | 624 | 0.386731 | CGGACACCGCCAATTTTCAC | 60.387 | 55.000 | 0.00 | 0.00 | 41.17 | 3.18 |
620 | 625 | 1.953017 | CGGACACCGCCAATTTTCA | 59.047 | 52.632 | 0.00 | 0.00 | 41.17 | 2.69 |
621 | 626 | 4.859784 | CGGACACCGCCAATTTTC | 57.140 | 55.556 | 0.00 | 0.00 | 41.17 | 2.29 |
642 | 647 | 7.224949 | GGCTAGGAACATCATACTTGTTAGTTC | 59.775 | 40.741 | 0.00 | 0.00 | 37.43 | 3.01 |
666 | 671 | 6.448006 | AGTGTCGACAAATAGAGTATATGGC | 58.552 | 40.000 | 21.95 | 1.45 | 0.00 | 4.40 |
667 | 672 | 7.649057 | TGAGTGTCGACAAATAGAGTATATGG | 58.351 | 38.462 | 21.95 | 0.00 | 0.00 | 2.74 |
668 | 673 | 9.516314 | TTTGAGTGTCGACAAATAGAGTATATG | 57.484 | 33.333 | 21.95 | 0.00 | 32.26 | 1.78 |
670 | 675 | 9.350357 | GTTTTGAGTGTCGACAAATAGAGTATA | 57.650 | 33.333 | 21.95 | 0.00 | 36.21 | 1.47 |
671 | 676 | 8.088981 | AGTTTTGAGTGTCGACAAATAGAGTAT | 58.911 | 33.333 | 21.95 | 0.00 | 36.21 | 2.12 |
673 | 678 | 6.201044 | CAGTTTTGAGTGTCGACAAATAGAGT | 59.799 | 38.462 | 21.95 | 5.29 | 36.21 | 3.24 |
674 | 679 | 6.584954 | CAGTTTTGAGTGTCGACAAATAGAG | 58.415 | 40.000 | 21.95 | 1.38 | 36.21 | 2.43 |
675 | 680 | 5.050363 | GCAGTTTTGAGTGTCGACAAATAGA | 60.050 | 40.000 | 21.95 | 3.88 | 36.21 | 1.98 |
677 | 682 | 4.572795 | TGCAGTTTTGAGTGTCGACAAATA | 59.427 | 37.500 | 21.95 | 6.30 | 36.21 | 1.40 |
678 | 683 | 3.376859 | TGCAGTTTTGAGTGTCGACAAAT | 59.623 | 39.130 | 21.95 | 12.35 | 36.21 | 2.32 |
679 | 684 | 2.744741 | TGCAGTTTTGAGTGTCGACAAA | 59.255 | 40.909 | 21.95 | 8.59 | 34.80 | 2.83 |
680 | 685 | 2.095213 | GTGCAGTTTTGAGTGTCGACAA | 59.905 | 45.455 | 21.95 | 1.14 | 0.00 | 3.18 |
682 | 687 | 1.663643 | TGTGCAGTTTTGAGTGTCGAC | 59.336 | 47.619 | 9.11 | 9.11 | 0.00 | 4.20 |
685 | 696 | 7.434897 | TGATTATTTTGTGCAGTTTTGAGTGTC | 59.565 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
706 | 717 | 5.709631 | TGTTGGAGCTTTTGTGCTATGATTA | 59.290 | 36.000 | 0.00 | 0.00 | 44.17 | 1.75 |
711 | 722 | 6.588719 | TTATTGTTGGAGCTTTTGTGCTAT | 57.411 | 33.333 | 0.00 | 0.00 | 44.17 | 2.97 |
722 | 733 | 7.917505 | CCTCTTGTCATTAATTATTGTTGGAGC | 59.082 | 37.037 | 7.13 | 0.00 | 0.00 | 4.70 |
732 | 743 | 9.113838 | GAGCTTGATTCCTCTTGTCATTAATTA | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
733 | 744 | 7.833183 | AGAGCTTGATTCCTCTTGTCATTAATT | 59.167 | 33.333 | 0.00 | 0.00 | 34.93 | 1.40 |
734 | 745 | 7.344913 | AGAGCTTGATTCCTCTTGTCATTAAT | 58.655 | 34.615 | 0.00 | 0.00 | 34.93 | 1.40 |
735 | 746 | 6.715280 | AGAGCTTGATTCCTCTTGTCATTAA | 58.285 | 36.000 | 0.00 | 0.00 | 34.93 | 1.40 |
756 | 767 | 8.141268 | GGAGTCCTAATCAATTGACTAAGAGAG | 58.859 | 40.741 | 11.07 | 0.00 | 38.15 | 3.20 |
762 | 776 | 8.840200 | AGTTAGGAGTCCTAATCAATTGACTA | 57.160 | 34.615 | 29.94 | 2.92 | 46.16 | 2.59 |
828 | 843 | 3.959991 | GAGGGGAGCTTGTGCGTCC | 62.960 | 68.421 | 0.00 | 0.00 | 45.42 | 4.79 |
1215 | 1234 | 1.359475 | GTACCGGCGAGATCCAGAC | 59.641 | 63.158 | 9.30 | 0.00 | 0.00 | 3.51 |
1485 | 1513 | 1.153939 | CTGACCGACGAGAGCAAGG | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
1497 | 1526 | 0.244994 | CCACTCCTCTGTTCTGACCG | 59.755 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1533 | 1563 | 2.291346 | CCCCTGTCCGAATTTTACCCTT | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1534 | 1564 | 1.283905 | CCCCTGTCCGAATTTTACCCT | 59.716 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
1589 | 1619 | 2.224066 | CGTTCTGGACTCAACTGGACTT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1620 | 1657 | 3.504863 | CATCCAATTGCAACGGAAAGAG | 58.495 | 45.455 | 20.23 | 9.42 | 31.18 | 2.85 |
1676 | 1713 | 4.298332 | GACGAAACCAAATCATTGCAACT | 58.702 | 39.130 | 0.00 | 0.00 | 35.10 | 3.16 |
1677 | 1714 | 3.119463 | CGACGAAACCAAATCATTGCAAC | 59.881 | 43.478 | 0.00 | 0.00 | 35.10 | 4.17 |
1678 | 1715 | 3.243234 | ACGACGAAACCAAATCATTGCAA | 60.243 | 39.130 | 0.00 | 0.00 | 35.10 | 4.08 |
1685 | 1722 | 3.001939 | ACTGTCAACGACGAAACCAAATC | 59.998 | 43.478 | 0.00 | 0.00 | 34.95 | 2.17 |
1748 | 1785 | 4.095334 | CGAGATCATGGACTGCATTTTCAA | 59.905 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
1756 | 1793 | 1.590932 | AATGCGAGATCATGGACTGC | 58.409 | 50.000 | 0.00 | 1.19 | 0.00 | 4.40 |
1789 | 1863 | 3.629855 | TCGCAATTCCAACAAGAGAAACA | 59.370 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1809 | 1884 | 1.129624 | CTTCCTCAGACTCACTCGTCG | 59.870 | 57.143 | 0.00 | 0.00 | 38.90 | 5.12 |
1812 | 1887 | 2.432444 | ACTCTTCCTCAGACTCACTCG | 58.568 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
1830 | 1905 | 5.699143 | AGCATATTTAGCCATGGAAGAACT | 58.301 | 37.500 | 18.40 | 4.83 | 0.00 | 3.01 |
1832 | 1907 | 7.944000 | TCATAAGCATATTTAGCCATGGAAGAA | 59.056 | 33.333 | 18.40 | 6.23 | 0.00 | 2.52 |
1841 | 1956 | 7.219484 | ACACCATTCATAAGCATATTTAGCC | 57.781 | 36.000 | 0.00 | 0.00 | 0.00 | 3.93 |
1860 | 1975 | 0.544223 | CCCACCGATAATGGACACCA | 59.456 | 55.000 | 0.00 | 0.00 | 39.87 | 4.17 |
1861 | 1976 | 0.818040 | GCCCACCGATAATGGACACC | 60.818 | 60.000 | 0.00 | 0.00 | 39.87 | 4.16 |
1862 | 1977 | 0.180406 | AGCCCACCGATAATGGACAC | 59.820 | 55.000 | 0.00 | 0.00 | 39.87 | 3.67 |
1863 | 1978 | 0.468226 | GAGCCCACCGATAATGGACA | 59.532 | 55.000 | 0.00 | 0.00 | 39.87 | 4.02 |
1864 | 1979 | 0.600255 | CGAGCCCACCGATAATGGAC | 60.600 | 60.000 | 0.00 | 0.00 | 39.87 | 4.02 |
1865 | 1980 | 1.046472 | ACGAGCCCACCGATAATGGA | 61.046 | 55.000 | 0.00 | 0.00 | 39.87 | 3.41 |
1866 | 1981 | 0.179056 | AACGAGCCCACCGATAATGG | 60.179 | 55.000 | 0.00 | 0.00 | 36.94 | 3.16 |
1867 | 1982 | 0.937304 | CAACGAGCCCACCGATAATG | 59.063 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1868 | 1983 | 0.179056 | CCAACGAGCCCACCGATAAT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 1.28 |
1869 | 1984 | 1.219664 | CCAACGAGCCCACCGATAA | 59.780 | 57.895 | 0.00 | 0.00 | 0.00 | 1.75 |
1870 | 1985 | 2.727392 | CCCAACGAGCCCACCGATA | 61.727 | 63.158 | 0.00 | 0.00 | 0.00 | 2.92 |
1871 | 1986 | 4.096003 | CCCAACGAGCCCACCGAT | 62.096 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1873 | 1988 | 4.760047 | CTCCCAACGAGCCCACCG | 62.760 | 72.222 | 0.00 | 0.00 | 0.00 | 4.94 |
1874 | 1989 | 3.316573 | CTCTCCCAACGAGCCCACC | 62.317 | 68.421 | 0.00 | 0.00 | 38.62 | 4.61 |
1875 | 1990 | 1.827399 | TTCTCTCCCAACGAGCCCAC | 61.827 | 60.000 | 0.00 | 0.00 | 38.62 | 4.61 |
1876 | 1991 | 0.909610 | ATTCTCTCCCAACGAGCCCA | 60.910 | 55.000 | 0.00 | 0.00 | 38.62 | 5.36 |
1877 | 1992 | 1.120530 | TATTCTCTCCCAACGAGCCC | 58.879 | 55.000 | 0.00 | 0.00 | 38.62 | 5.19 |
1878 | 1993 | 1.757699 | AGTATTCTCTCCCAACGAGCC | 59.242 | 52.381 | 0.00 | 0.00 | 38.62 | 4.70 |
1879 | 1994 | 2.166664 | ACAGTATTCTCTCCCAACGAGC | 59.833 | 50.000 | 0.00 | 0.00 | 38.62 | 5.03 |
1880 | 1995 | 4.457834 | AACAGTATTCTCTCCCAACGAG | 57.542 | 45.455 | 0.00 | 0.00 | 40.30 | 4.18 |
1881 | 1996 | 4.884668 | AAACAGTATTCTCTCCCAACGA | 57.115 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
1882 | 1997 | 5.962433 | TCTAAACAGTATTCTCTCCCAACG | 58.038 | 41.667 | 0.00 | 0.00 | 0.00 | 4.10 |
1883 | 1998 | 8.915036 | TCTATCTAAACAGTATTCTCTCCCAAC | 58.085 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
1884 | 1999 | 9.488762 | TTCTATCTAAACAGTATTCTCTCCCAA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 4.12 |
1885 | 2000 | 9.488762 | TTTCTATCTAAACAGTATTCTCTCCCA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
1886 | 2001 | 9.752961 | GTTTCTATCTAAACAGTATTCTCTCCC | 57.247 | 37.037 | 0.00 | 0.00 | 38.85 | 4.30 |
1895 | 2010 | 9.424319 | CAAGCAAGAGTTTCTATCTAAACAGTA | 57.576 | 33.333 | 0.00 | 0.00 | 40.97 | 2.74 |
1896 | 2011 | 7.095017 | GCAAGCAAGAGTTTCTATCTAAACAGT | 60.095 | 37.037 | 0.00 | 0.00 | 40.97 | 3.55 |
1897 | 2012 | 7.095060 | TGCAAGCAAGAGTTTCTATCTAAACAG | 60.095 | 37.037 | 0.00 | 0.00 | 40.97 | 3.16 |
1898 | 2013 | 6.710295 | TGCAAGCAAGAGTTTCTATCTAAACA | 59.290 | 34.615 | 0.00 | 0.00 | 40.97 | 2.83 |
1899 | 2014 | 7.133891 | TGCAAGCAAGAGTTTCTATCTAAAC | 57.866 | 36.000 | 0.00 | 0.00 | 39.22 | 2.01 |
1900 | 2015 | 7.744087 | TTGCAAGCAAGAGTTTCTATCTAAA | 57.256 | 32.000 | 2.89 | 0.00 | 0.00 | 1.85 |
1901 | 2016 | 7.928307 | ATTGCAAGCAAGAGTTTCTATCTAA | 57.072 | 32.000 | 13.35 | 0.00 | 39.47 | 2.10 |
1902 | 2017 | 9.049523 | CATATTGCAAGCAAGAGTTTCTATCTA | 57.950 | 33.333 | 13.35 | 0.00 | 39.47 | 1.98 |
1903 | 2018 | 7.468357 | GCATATTGCAAGCAAGAGTTTCTATCT | 60.468 | 37.037 | 13.35 | 0.00 | 44.26 | 1.98 |
1904 | 2019 | 6.636044 | GCATATTGCAAGCAAGAGTTTCTATC | 59.364 | 38.462 | 13.35 | 0.00 | 44.26 | 2.08 |
1905 | 2020 | 6.501781 | GCATATTGCAAGCAAGAGTTTCTAT | 58.498 | 36.000 | 13.35 | 1.92 | 44.26 | 1.98 |
1906 | 2021 | 5.883661 | GCATATTGCAAGCAAGAGTTTCTA | 58.116 | 37.500 | 13.35 | 0.00 | 44.26 | 2.10 |
1907 | 2022 | 4.741342 | GCATATTGCAAGCAAGAGTTTCT | 58.259 | 39.130 | 13.35 | 0.00 | 44.26 | 2.52 |
1918 | 2033 | 9.625447 | GGACGTCATCCATAAGCATATTGCAAG | 62.625 | 44.444 | 18.91 | 0.00 | 46.59 | 4.01 |
1919 | 2034 | 7.949365 | GGACGTCATCCATAAGCATATTGCAA | 61.949 | 42.308 | 18.91 | 0.00 | 46.59 | 4.08 |
1920 | 2035 | 6.540281 | GGACGTCATCCATAAGCATATTGCA | 61.540 | 44.000 | 18.91 | 0.00 | 46.59 | 4.08 |
1921 | 2036 | 4.962693 | GACGTCATCCATAAGCATATTGC | 58.037 | 43.478 | 11.55 | 0.00 | 45.46 | 3.56 |
1939 | 2054 | 0.104304 | GAGCCACCGATAATGGACGT | 59.896 | 55.000 | 0.00 | 0.00 | 39.87 | 4.34 |
1963 | 2078 | 5.264395 | TCTATGTGGACAGTGATTCTCTCA | 58.736 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
1978 | 2093 | 3.503363 | TGCAAGCAAGAGTTTCTATGTGG | 59.497 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
1979 | 2094 | 4.754372 | TGCAAGCAAGAGTTTCTATGTG | 57.246 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
1981 | 2096 | 7.478322 | ACATATTGCAAGCAAGAGTTTCTATG | 58.522 | 34.615 | 13.35 | 14.56 | 39.47 | 2.23 |
1989 | 2104 | 5.306532 | ACAAGACATATTGCAAGCAAGAG | 57.693 | 39.130 | 13.35 | 7.78 | 39.47 | 2.85 |
1991 | 2106 | 4.093514 | CGACAAGACATATTGCAAGCAAG | 58.906 | 43.478 | 13.35 | 2.59 | 39.47 | 4.01 |
1995 | 2110 | 2.348362 | TCGCGACAAGACATATTGCAAG | 59.652 | 45.455 | 3.71 | 0.00 | 33.28 | 4.01 |
2013 | 2128 | 1.797025 | AGTTTGACCTGTAAGCTCGC | 58.203 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2021 | 2136 | 3.200825 | CCCCATCAGATAGTTTGACCTGT | 59.799 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
2044 | 2159 | 7.855375 | ACAGAAATCCAGATAAAGATCAGTGA | 58.145 | 34.615 | 0.00 | 0.00 | 34.17 | 3.41 |
2057 | 2172 | 6.323482 | TCAATCCAACAAAACAGAAATCCAGA | 59.677 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
2085 | 2200 | 6.509317 | AGTAACAACGCAAAATTTGACATG | 57.491 | 33.333 | 10.26 | 6.70 | 0.00 | 3.21 |
2088 | 2203 | 5.187480 | GCAAGTAACAACGCAAAATTTGAC | 58.813 | 37.500 | 10.26 | 0.23 | 0.00 | 3.18 |
2097 | 2216 | 2.415168 | GCTCTATGCAAGTAACAACGCA | 59.585 | 45.455 | 0.00 | 0.00 | 42.31 | 5.24 |
2099 | 2218 | 4.201724 | GGAAGCTCTATGCAAGTAACAACG | 60.202 | 45.833 | 0.00 | 0.00 | 45.94 | 4.10 |
2163 | 2282 | 3.568007 | GTGCCAGTAAACCACTTCAATCA | 59.432 | 43.478 | 0.00 | 0.00 | 34.26 | 2.57 |
2209 | 2328 | 4.936411 | TCATATTCGAAAAGGGCACGTTTA | 59.064 | 37.500 | 0.00 | 0.00 | 46.19 | 2.01 |
2214 | 2333 | 5.763204 | TCCTTATCATATTCGAAAAGGGCAC | 59.237 | 40.000 | 19.13 | 0.00 | 35.31 | 5.01 |
2217 | 2336 | 7.284489 | TGGTTTCCTTATCATATTCGAAAAGGG | 59.716 | 37.037 | 19.13 | 7.30 | 35.31 | 3.95 |
2252 | 2372 | 5.163447 | ACGATATAAAACACAGGCTGCTCTA | 60.163 | 40.000 | 15.89 | 0.00 | 0.00 | 2.43 |
2347 | 2472 | 0.388294 | GTATTTCCGGACGGAGGGAG | 59.612 | 60.000 | 13.64 | 0.00 | 46.06 | 4.30 |
2348 | 2473 | 0.032813 | AGTATTTCCGGACGGAGGGA | 60.033 | 55.000 | 13.64 | 4.95 | 46.06 | 4.20 |
2349 | 2474 | 0.828677 | AAGTATTTCCGGACGGAGGG | 59.171 | 55.000 | 13.64 | 0.00 | 46.06 | 4.30 |
2350 | 2475 | 1.206371 | ACAAGTATTTCCGGACGGAGG | 59.794 | 52.381 | 13.64 | 0.00 | 46.06 | 4.30 |
2351 | 2476 | 2.094390 | TGACAAGTATTTCCGGACGGAG | 60.094 | 50.000 | 13.64 | 3.15 | 46.06 | 4.63 |
2352 | 2477 | 1.894466 | TGACAAGTATTTCCGGACGGA | 59.106 | 47.619 | 1.83 | 9.76 | 43.52 | 4.69 |
2353 | 2478 | 2.373540 | TGACAAGTATTTCCGGACGG | 57.626 | 50.000 | 1.83 | 3.96 | 0.00 | 4.79 |
2354 | 2479 | 3.517602 | TGATGACAAGTATTTCCGGACG | 58.482 | 45.455 | 1.83 | 0.00 | 0.00 | 4.79 |
2355 | 2480 | 5.873179 | TTTGATGACAAGTATTTCCGGAC | 57.127 | 39.130 | 1.83 | 0.00 | 37.32 | 4.79 |
2356 | 2481 | 6.657117 | TCATTTTGATGACAAGTATTTCCGGA | 59.343 | 34.615 | 0.00 | 0.00 | 37.32 | 5.14 |
2357 | 2482 | 6.851609 | TCATTTTGATGACAAGTATTTCCGG | 58.148 | 36.000 | 0.00 | 0.00 | 37.32 | 5.14 |
2358 | 2483 | 8.915871 | ATTCATTTTGATGACAAGTATTTCCG | 57.084 | 30.769 | 0.00 | 0.00 | 37.32 | 4.30 |
2365 | 2490 | 8.096414 | CCCCTTTTATTCATTTTGATGACAAGT | 58.904 | 33.333 | 0.00 | 0.00 | 37.32 | 3.16 |
2366 | 2491 | 8.313292 | TCCCCTTTTATTCATTTTGATGACAAG | 58.687 | 33.333 | 0.00 | 0.00 | 37.32 | 3.16 |
2367 | 2492 | 8.200024 | TCCCCTTTTATTCATTTTGATGACAA | 57.800 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
2368 | 2493 | 7.789202 | TCCCCTTTTATTCATTTTGATGACA | 57.211 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2369 | 2494 | 8.260114 | ACATCCCCTTTTATTCATTTTGATGAC | 58.740 | 33.333 | 0.00 | 0.00 | 32.39 | 3.06 |
2370 | 2495 | 8.378115 | ACATCCCCTTTTATTCATTTTGATGA | 57.622 | 30.769 | 0.00 | 0.00 | 32.39 | 2.92 |
2373 | 2498 | 9.713684 | AGATACATCCCCTTTTATTCATTTTGA | 57.286 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2378 | 2503 | 9.170890 | TGTCTAGATACATCCCCTTTTATTCAT | 57.829 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2379 | 2504 | 8.561536 | TGTCTAGATACATCCCCTTTTATTCA | 57.438 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2387 | 2512 | 9.845214 | ACTAAAATATGTCTAGATACATCCCCT | 57.155 | 33.333 | 0.00 | 0.00 | 40.52 | 4.79 |
2425 | 2550 | 9.918630 | ACTTGTCATCAAAATGGATAAAAAGAG | 57.081 | 29.630 | 0.00 | 0.00 | 33.42 | 2.85 |
2433 | 2558 | 7.975616 | CCGAAAATACTTGTCATCAAAATGGAT | 59.024 | 33.333 | 0.00 | 0.00 | 33.42 | 3.41 |
2434 | 2559 | 7.175816 | TCCGAAAATACTTGTCATCAAAATGGA | 59.824 | 33.333 | 0.00 | 0.00 | 33.42 | 3.41 |
2435 | 2560 | 7.273381 | GTCCGAAAATACTTGTCATCAAAATGG | 59.727 | 37.037 | 0.00 | 0.00 | 33.42 | 3.16 |
2436 | 2561 | 7.807433 | TGTCCGAAAATACTTGTCATCAAAATG | 59.193 | 33.333 | 0.00 | 0.00 | 32.87 | 2.32 |
2437 | 2562 | 7.881142 | TGTCCGAAAATACTTGTCATCAAAAT | 58.119 | 30.769 | 0.00 | 0.00 | 32.87 | 1.82 |
2438 | 2563 | 7.227711 | TCTGTCCGAAAATACTTGTCATCAAAA | 59.772 | 33.333 | 0.00 | 0.00 | 32.87 | 2.44 |
2439 | 2564 | 6.708502 | TCTGTCCGAAAATACTTGTCATCAAA | 59.291 | 34.615 | 0.00 | 0.00 | 32.87 | 2.69 |
2440 | 2565 | 6.227522 | TCTGTCCGAAAATACTTGTCATCAA | 58.772 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2441 | 2566 | 5.789521 | TCTGTCCGAAAATACTTGTCATCA | 58.210 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
2442 | 2567 | 5.292101 | CCTCTGTCCGAAAATACTTGTCATC | 59.708 | 44.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2443 | 2568 | 5.178797 | CCTCTGTCCGAAAATACTTGTCAT | 58.821 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2444 | 2569 | 4.562757 | CCCTCTGTCCGAAAATACTTGTCA | 60.563 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
2445 | 2570 | 3.933332 | CCCTCTGTCCGAAAATACTTGTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2446 | 2571 | 3.581332 | TCCCTCTGTCCGAAAATACTTGT | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2447 | 2572 | 4.184629 | CTCCCTCTGTCCGAAAATACTTG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
2448 | 2573 | 3.838903 | ACTCCCTCTGTCCGAAAATACTT | 59.161 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2449 | 2574 | 3.442076 | ACTCCCTCTGTCCGAAAATACT | 58.558 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
2450 | 2575 | 3.889520 | ACTCCCTCTGTCCGAAAATAC | 57.110 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
2451 | 2576 | 6.346096 | CAAATACTCCCTCTGTCCGAAAATA | 58.654 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2452 | 2577 | 5.186198 | CAAATACTCCCTCTGTCCGAAAAT | 58.814 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2453 | 2578 | 4.564821 | CCAAATACTCCCTCTGTCCGAAAA | 60.565 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
2454 | 2579 | 3.055385 | CCAAATACTCCCTCTGTCCGAAA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
2455 | 2580 | 2.500098 | CCAAATACTCCCTCTGTCCGAA | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2456 | 2581 | 2.108168 | CCAAATACTCCCTCTGTCCGA | 58.892 | 52.381 | 0.00 | 0.00 | 0.00 | 4.55 |
2457 | 2582 | 1.831736 | ACCAAATACTCCCTCTGTCCG | 59.168 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
2458 | 2583 | 5.601313 | TGTATACCAAATACTCCCTCTGTCC | 59.399 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2459 | 2584 | 6.726490 | TGTATACCAAATACTCCCTCTGTC | 57.274 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2460 | 2585 | 6.672657 | AGTTGTATACCAAATACTCCCTCTGT | 59.327 | 38.462 | 0.00 | 0.00 | 34.07 | 3.41 |
2461 | 2586 | 7.125792 | AGTTGTATACCAAATACTCCCTCTG | 57.874 | 40.000 | 0.00 | 0.00 | 34.07 | 3.35 |
2462 | 2587 | 7.750947 | AAGTTGTATACCAAATACTCCCTCT | 57.249 | 36.000 | 0.00 | 0.00 | 34.07 | 3.69 |
2463 | 2588 | 8.044908 | TCAAAGTTGTATACCAAATACTCCCTC | 58.955 | 37.037 | 0.00 | 0.00 | 34.07 | 4.30 |
2464 | 2589 | 7.924541 | TCAAAGTTGTATACCAAATACTCCCT | 58.075 | 34.615 | 0.00 | 0.00 | 34.07 | 4.20 |
2465 | 2590 | 8.570068 | TTCAAAGTTGTATACCAAATACTCCC | 57.430 | 34.615 | 0.00 | 0.00 | 34.07 | 4.30 |
2487 | 2612 | 7.593273 | CGTTGCAAGGAATAACAAAACTATTCA | 59.407 | 33.333 | 13.85 | 0.00 | 37.46 | 2.57 |
2526 | 2651 | 9.739276 | AGACTTCATGGTAAATGAACTGAAATA | 57.261 | 29.630 | 0.00 | 0.00 | 34.66 | 1.40 |
2801 | 3097 | 0.388134 | ACGATTGGACGGAGAACACG | 60.388 | 55.000 | 0.00 | 0.00 | 37.61 | 4.49 |
2807 | 3103 | 1.202417 | ACATGCTACGATTGGACGGAG | 60.202 | 52.381 | 0.00 | 0.00 | 45.73 | 4.63 |
3013 | 3313 | 6.437928 | TCTGACACATTGCAAATTGTTAGTC | 58.562 | 36.000 | 23.54 | 18.51 | 29.95 | 2.59 |
3031 | 3331 | 2.750814 | TCCCTGCACTATCATCTGACA | 58.249 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
3096 | 3397 | 5.994250 | AGCCACTATCATGAGTATTGTGTT | 58.006 | 37.500 | 0.09 | 0.00 | 31.00 | 3.32 |
3142 | 3447 | 5.355071 | TCATACTGAAGCATCACATTCCAAC | 59.645 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3238 | 3646 | 9.191995 | AGTTTCTTTTTGTCAAAAGTACAAGTG | 57.808 | 29.630 | 10.50 | 0.00 | 46.35 | 3.16 |
3243 | 3651 | 9.406828 | AGTCAAGTTTCTTTTTGTCAAAAGTAC | 57.593 | 29.630 | 10.50 | 7.88 | 46.35 | 2.73 |
3272 | 3680 | 2.719739 | AGGAGACCATGTGAGCAAATG | 58.280 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
3660 | 4074 | 8.840321 | AGTTAATAATGGCATTGTCATCACTAC | 58.160 | 33.333 | 22.57 | 8.01 | 0.00 | 2.73 |
3759 | 4173 | 2.091278 | AGGCTGCCACCACTACTATAGA | 60.091 | 50.000 | 22.65 | 0.00 | 0.00 | 1.98 |
3912 | 4346 | 6.763135 | TCCCATAAAGAAATCTCACGATGAAG | 59.237 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3919 | 4353 | 8.743714 | AGTGAAAATCCCATAAAGAAATCTCAC | 58.256 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
4114 | 4548 | 7.973944 | ACAGAAACTGAAACATTTACCTTGTTC | 59.026 | 33.333 | 5.76 | 0.00 | 34.22 | 3.18 |
4166 | 4602 | 1.180029 | ATCCAGCTTGATGCACCAAC | 58.820 | 50.000 | 0.00 | 0.00 | 45.94 | 3.77 |
4296 | 4734 | 0.443869 | GCATGTGACATCGTGTGGAC | 59.556 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4343 | 4781 | 3.355378 | TCCACATGATAGGCAAAAGGTG | 58.645 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
4415 | 4854 | 9.790344 | AAATCAACATAATGAGGGAGAGATAAG | 57.210 | 33.333 | 0.00 | 0.00 | 31.76 | 1.73 |
4650 | 5093 | 3.838244 | TGTTAGTGGCTCAACAGAACT | 57.162 | 42.857 | 0.00 | 0.00 | 31.29 | 3.01 |
4651 | 5094 | 5.390991 | GCTTATGTTAGTGGCTCAACAGAAC | 60.391 | 44.000 | 9.28 | 0.00 | 38.01 | 3.01 |
4711 | 5157 | 2.553602 | CAGTGCCTGCAATTTACAGACA | 59.446 | 45.455 | 6.78 | 0.00 | 37.32 | 3.41 |
5041 | 5488 | 6.834168 | TCAGAAAAAGCCAATAACCCTAAG | 57.166 | 37.500 | 0.00 | 0.00 | 0.00 | 2.18 |
5281 | 5730 | 5.981915 | GGAGAAAATTCTGGCATAATGAAGC | 59.018 | 40.000 | 0.00 | 0.00 | 37.73 | 3.86 |
5312 | 5761 | 2.236893 | TCCTGCATGTCAATGAGCTACA | 59.763 | 45.455 | 0.00 | 0.00 | 35.67 | 2.74 |
5463 | 5912 | 9.671279 | TGAGATTCTGTTTCTAATAAAGATGCA | 57.329 | 29.630 | 0.00 | 0.00 | 33.05 | 3.96 |
5596 | 6045 | 7.011389 | TCGTCATCCACACAATCTTGATATTTC | 59.989 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
5704 | 6153 | 1.402968 | CAAAGGAATGTCCATCAGGCG | 59.597 | 52.381 | 0.00 | 0.00 | 39.61 | 5.52 |
5819 | 6268 | 4.201990 | CCTCATTCTATCCAACAGCAAAGC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
5912 | 6376 | 2.942376 | TGACTGACCACATGTTTGACAC | 59.058 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
5974 | 6438 | 7.363880 | CCACTGTATGTAAGTACACTTCATCCT | 60.364 | 40.741 | 0.00 | 0.00 | 39.30 | 3.24 |
6023 | 6487 | 7.917505 | ACTGCTTGACTGTCTAAAAATGAAAAG | 59.082 | 33.333 | 9.51 | 1.62 | 0.00 | 2.27 |
6129 | 6595 | 5.603813 | ACCTAAATGGGCAGCAATTTATGAT | 59.396 | 36.000 | 15.79 | 4.66 | 41.11 | 2.45 |
6147 | 6613 | 5.772672 | ACACAGATAACAATTGGCACCTAAA | 59.227 | 36.000 | 10.83 | 0.00 | 0.00 | 1.85 |
6555 | 7024 | 3.809832 | GCATCAGTGCCTAACGATACATT | 59.190 | 43.478 | 0.00 | 0.00 | 45.76 | 2.71 |
6569 | 7038 | 2.967599 | TACCTACTGCTGCATCAGTG | 57.032 | 50.000 | 28.75 | 17.50 | 45.95 | 3.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.