Multiple sequence alignment - TraesCS4B01G100300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G100300 chr4B 100.000 5831 0 0 1 5831 106037859 106032029 0.000000e+00 10768.0
1 TraesCS4B01G100300 chr4B 85.318 1117 113 24 3886 4961 146488582 146489688 0.000000e+00 1107.0
2 TraesCS4B01G100300 chr4B 82.468 1232 143 38 2366 3546 146487038 146488247 0.000000e+00 1011.0
3 TraesCS4B01G100300 chr4B 83.366 517 56 11 964 1452 146480601 146481115 8.910000e-123 451.0
4 TraesCS4B01G100300 chr4B 95.000 100 2 3 3644 3741 516506062 516505964 2.810000e-33 154.0
5 TraesCS4B01G100300 chr4B 82.609 92 6 4 2006 2092 106035768 106035854 8.110000e-09 73.1
6 TraesCS4B01G100300 chr4A 93.240 3358 156 28 1 3331 514411270 514414583 0.000000e+00 4878.0
7 TraesCS4B01G100300 chr4A 95.608 1275 55 1 3763 5036 514420305 514421579 0.000000e+00 2043.0
8 TraesCS4B01G100300 chr4A 82.364 1083 140 28 2084 3130 472950592 472949525 0.000000e+00 894.0
9 TraesCS4B01G100300 chr4A 85.016 614 57 15 3903 4483 472946687 472946076 5.030000e-165 592.0
10 TraesCS4B01G100300 chr4A 83.085 402 45 8 1073 1451 472951440 472951039 1.560000e-90 344.0
11 TraesCS4B01G100300 chr4A 94.565 184 10 0 3330 3513 514414629 514414812 9.560000e-73 285.0
12 TraesCS4B01G100300 chr4A 94.156 154 9 0 5204 5357 514421954 514422107 9.770000e-58 235.0
13 TraesCS4B01G100300 chr4A 99.153 118 0 1 3513 3630 514420164 514420280 1.650000e-50 211.0
14 TraesCS4B01G100300 chr4A 80.255 314 27 15 5456 5736 514422445 514422756 2.750000e-48 204.0
15 TraesCS4B01G100300 chr4A 94.898 98 3 2 3644 3739 388241730 388241827 1.010000e-32 152.0
16 TraesCS4B01G100300 chr4A 86.598 97 8 4 972 1063 472951721 472951625 1.030000e-17 102.0
17 TraesCS4B01G100300 chr4A 80.435 92 12 6 2006 2092 514413369 514413279 1.360000e-06 65.8
18 TraesCS4B01G100300 chr4D 94.413 2864 123 18 798 3630 73223572 73220715 0.000000e+00 4368.0
19 TraesCS4B01G100300 chr4D 93.736 1325 64 11 3724 5036 73220717 73219400 0.000000e+00 1969.0
20 TraesCS4B01G100300 chr4D 81.173 1620 205 61 2083 3630 102157002 102158593 0.000000e+00 1210.0
21 TraesCS4B01G100300 chr4D 85.860 1075 106 21 3893 4935 102159185 102160245 0.000000e+00 1101.0
22 TraesCS4B01G100300 chr4D 92.763 608 31 4 2 608 73224166 73223571 0.000000e+00 867.0
23 TraesCS4B01G100300 chr4D 83.205 518 56 13 964 1451 102156082 102156598 4.150000e-121 446.0
24 TraesCS4B01G100300 chr4D 86.957 276 29 4 5030 5303 73219179 73218909 2.640000e-78 303.0
25 TraesCS4B01G100300 chr4D 100.000 33 0 0 2006 2038 73222265 73222297 1.750000e-05 62.1
26 TraesCS4B01G100300 chr3B 95.833 96 3 1 3644 3739 466262552 466262646 2.810000e-33 154.0
27 TraesCS4B01G100300 chr3A 95.833 96 3 1 3644 3739 83748762 83748668 2.810000e-33 154.0
28 TraesCS4B01G100300 chr3A 92.308 39 2 1 2004 2041 652638709 652638671 3.000000e-03 54.7
29 TraesCS4B01G100300 chr3A 92.308 39 2 1 2004 2041 652686864 652686826 3.000000e-03 54.7
30 TraesCS4B01G100300 chr2A 94.949 99 4 1 3644 3741 223717242 223717144 2.810000e-33 154.0
31 TraesCS4B01G100300 chr2A 95.833 96 2 1 3644 3739 554014910 554014817 2.810000e-33 154.0
32 TraesCS4B01G100300 chr2A 95.789 95 1 2 3647 3741 530355008 530354917 3.640000e-32 150.0
33 TraesCS4B01G100300 chr2A 100.000 28 0 0 2063 2090 694589646 694589673 1.100000e-02 52.8
34 TraesCS4B01G100300 chr6B 94.898 98 3 2 3644 3741 15113087 15112992 1.010000e-32 152.0
35 TraesCS4B01G100300 chr6B 97.143 35 0 1 2005 2038 342982169 342982135 2.270000e-04 58.4
36 TraesCS4B01G100300 chr6B 94.737 38 1 1 2057 2093 506389385 506389422 2.270000e-04 58.4
37 TraesCS4B01G100300 chr6B 94.595 37 1 1 2057 2092 637025290 637025254 8.160000e-04 56.5
38 TraesCS4B01G100300 chr6A 95.789 95 3 1 3644 3738 94207368 94207275 1.010000e-32 152.0
39 TraesCS4B01G100300 chr5D 80.435 92 7 8 2008 2098 230024146 230024065 6.310000e-05 60.2
40 TraesCS4B01G100300 chr1B 94.737 38 0 2 2003 2038 673957685 673957648 2.270000e-04 58.4
41 TraesCS4B01G100300 chr2D 100.000 30 0 0 2063 2092 636493066 636493095 8.160000e-04 56.5
42 TraesCS4B01G100300 chr7D 92.105 38 3 0 2065 2102 126475492 126475529 3.000000e-03 54.7
43 TraesCS4B01G100300 chr5A 96.875 32 0 1 2062 2092 32882694 32882725 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G100300 chr4B 106032029 106037859 5830 True 10768.00 10768 100.000000 1 5831 1 chr4B.!!$R1 5830
1 TraesCS4B01G100300 chr4B 146487038 146489688 2650 False 1059.00 1107 83.893000 2366 4961 2 chr4B.!!$F3 2595
2 TraesCS4B01G100300 chr4B 146480601 146481115 514 False 451.00 451 83.366000 964 1452 1 chr4B.!!$F2 488
3 TraesCS4B01G100300 chr4A 514411270 514414812 3542 False 2581.50 4878 93.902500 1 3513 2 chr4A.!!$F2 3512
4 TraesCS4B01G100300 chr4A 514420164 514422756 2592 False 673.25 2043 92.293000 3513 5736 4 chr4A.!!$F3 2223
5 TraesCS4B01G100300 chr4A 472946076 472951721 5645 True 483.00 894 84.265750 972 4483 4 chr4A.!!$R2 3511
6 TraesCS4B01G100300 chr4D 73218909 73224166 5257 True 1876.75 4368 91.967250 2 5303 4 chr4D.!!$R1 5301
7 TraesCS4B01G100300 chr4D 102156082 102160245 4163 False 919.00 1210 83.412667 964 4935 3 chr4D.!!$F2 3971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 685 0.180642 CAGAGGATGAGCTGCACCAT 59.819 55.0 1.02 4.76 0.0 3.55 F
1797 2157 0.399075 GGGGAAGAAGAACGAACCCA 59.601 55.0 0.00 0.00 39.1 4.51 F
2874 3323 0.545309 TCTGCCCCACTGCTAGAAGT 60.545 55.0 0.00 0.00 0.0 3.01 F
3671 5944 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.0 23.81 13.97 37.5 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2515 1.301293 GAGGCCAGGTTCCAAGAGG 59.699 63.158 5.01 0.0 0.00 3.69 R
3652 5925 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.0 41.02 3.28 R
4583 7827 0.392998 ATTCGCAAACCGATCAGGCT 60.393 50.000 3.85 0.0 46.81 4.58 R
4932 8206 0.040425 CTTGCACCGCACAAAGTACC 60.040 55.000 0.00 0.0 38.71 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.363868 TCCTAGTTGATACACCATCTTCAGG 59.636 44.000 0.00 0.00 34.46 3.86
270 279 2.435059 GTCCTGCCTCTTCGCCAC 60.435 66.667 0.00 0.00 0.00 5.01
273 282 0.902984 TCCTGCCTCTTCGCCACTAA 60.903 55.000 0.00 0.00 0.00 2.24
297 312 1.946768 CTTGAGTTTGGACAAGGCGAA 59.053 47.619 0.00 0.00 39.52 4.70
520 536 0.669318 TTGATCCGTGGACAGAACGC 60.669 55.000 0.00 0.00 39.69 4.84
551 567 5.008613 TGCTGGTGTTGTCTCTGTAAAAATC 59.991 40.000 0.00 0.00 0.00 2.17
576 592 8.536175 TCTTGATACAGGGTTTTCAAACTTTTT 58.464 29.630 2.55 0.00 38.89 1.94
609 625 4.504864 CCATCTGGGTGTTCTTGTTACTGA 60.505 45.833 0.00 0.00 0.00 3.41
613 629 4.448210 TGGGTGTTCTTGTTACTGAGTTC 58.552 43.478 0.00 0.00 0.00 3.01
651 667 0.740149 CCACTTTGCACAGTTCAGCA 59.260 50.000 1.88 0.00 39.32 4.41
668 684 1.600638 CAGAGGATGAGCTGCACCA 59.399 57.895 1.02 0.00 0.00 4.17
669 685 0.180642 CAGAGGATGAGCTGCACCAT 59.819 55.000 1.02 4.76 0.00 3.55
682 698 6.038603 TGAGCTGCACCATTATTAATGAACTC 59.961 38.462 16.34 12.57 41.46 3.01
791 808 3.458189 AGTATACTTTGCAGCTAAGCCG 58.542 45.455 15.58 0.00 0.00 5.52
845 862 6.939730 TCAACTTGGCAGAATATTGTCAGTAA 59.060 34.615 0.00 0.00 33.64 2.24
865 882 3.863142 AATGCCAAGATCAGAAAGCAC 57.137 42.857 0.00 0.00 32.26 4.40
866 883 2.275134 TGCCAAGATCAGAAAGCACA 57.725 45.000 0.00 0.00 0.00 4.57
908 925 7.333528 ACTGAAGAAGACAAAAACAGCATTA 57.666 32.000 0.00 0.00 0.00 1.90
1242 1439 1.208165 ACATGTCCACCCTCTTCCCC 61.208 60.000 0.00 0.00 0.00 4.81
1331 1550 6.430000 TCTCTGGTTTGGTCTATTTTAACAGC 59.570 38.462 0.00 0.00 0.00 4.40
1347 1566 4.519540 AACAGCAACACTTGTTCTTTGT 57.480 36.364 0.00 0.00 35.83 2.83
1348 1567 3.836949 ACAGCAACACTTGTTCTTTGTG 58.163 40.909 0.00 0.00 35.83 3.33
1352 1571 3.783943 GCAACACTTGTTCTTTGTGTACG 59.216 43.478 0.00 0.00 43.11 3.67
1363 1582 6.964370 TGTTCTTTGTGTACGAGTCATTTTTG 59.036 34.615 0.00 0.00 0.00 2.44
1374 1593 9.357652 GTACGAGTCATTTTTGGTATGTTAGTA 57.642 33.333 0.00 0.00 0.00 1.82
1462 1813 3.696051 ACAGTTTGTTGACAGTGCATCTT 59.304 39.130 0.00 0.00 0.00 2.40
1465 1816 4.158394 AGTTTGTTGACAGTGCATCTTGTT 59.842 37.500 0.00 0.00 0.00 2.83
1497 1853 9.734620 TGCTATTTATGCTTTGTACATTTCATC 57.265 29.630 0.00 0.00 0.00 2.92
1533 1889 1.276421 CCCTAGCAACCCTATCATCCG 59.724 57.143 0.00 0.00 0.00 4.18
1624 1983 4.850386 AGGAACATCCTTACCAACCTTAGT 59.150 41.667 0.00 0.00 46.91 2.24
1708 2068 0.968405 GAAGCTTTTGTGATGCCCCA 59.032 50.000 0.00 0.00 0.00 4.96
1732 2092 1.889105 CTGATGTTGCGATCGGGGG 60.889 63.158 18.30 0.00 0.00 5.40
1733 2093 2.189521 GATGTTGCGATCGGGGGT 59.810 61.111 18.30 0.00 0.00 4.95
1788 2148 2.770232 GGGAAACGATAGGGGAAGAAGA 59.230 50.000 0.00 0.00 43.77 2.87
1797 2157 0.399075 GGGGAAGAAGAACGAACCCA 59.601 55.000 0.00 0.00 39.10 4.51
1837 2197 9.939802 TCTAGTTTGTTATCCTTTCTTACTTCC 57.060 33.333 0.00 0.00 0.00 3.46
1840 2200 7.718314 AGTTTGTTATCCTTTCTTACTTCCGTT 59.282 33.333 0.00 0.00 0.00 4.44
1841 2201 8.347771 GTTTGTTATCCTTTCTTACTTCCGTTT 58.652 33.333 0.00 0.00 0.00 3.60
1844 2204 7.935210 TGTTATCCTTTCTTACTTCCGTTTCTT 59.065 33.333 0.00 0.00 0.00 2.52
1912 2272 5.010719 TCGACTTCTAGTTGACACCATCTTT 59.989 40.000 0.00 0.00 33.83 2.52
1916 2283 8.140112 ACTTCTAGTTGACACCATCTTTAGAT 57.860 34.615 0.00 0.00 34.56 1.98
2022 2422 5.009410 ACGATGTAAAATACTACTCCCTCCG 59.991 44.000 0.00 0.00 0.00 4.63
2045 2445 9.923143 TCCGATCCATATTAATTGTAGTACAAG 57.077 33.333 19.87 5.70 41.94 3.16
2250 2659 3.645884 CTTGTTGACTGAAAATGCTGGG 58.354 45.455 0.00 0.00 0.00 4.45
2255 2664 5.115480 GTTGACTGAAAATGCTGGGAAAAA 58.885 37.500 0.00 0.00 0.00 1.94
2356 2794 5.839262 TTGCCAGATATAATTAGCGAACG 57.161 39.130 0.00 0.00 0.00 3.95
2359 2797 5.860182 TGCCAGATATAATTAGCGAACGTAC 59.140 40.000 0.00 0.00 0.00 3.67
2407 2851 6.982141 TCGGTTTATCTCAATGGTATGTGTAC 59.018 38.462 0.00 0.00 0.00 2.90
2416 2860 9.642343 TCTCAATGGTATGTGTACTACTTATCT 57.358 33.333 0.00 0.00 0.00 1.98
2468 2912 8.661352 TCTTTTTATGACGATGATGCTATTGA 57.339 30.769 0.00 0.00 0.00 2.57
2522 2966 2.046892 CAACAGGAGCGGTGGAGG 60.047 66.667 0.00 0.00 0.00 4.30
2577 3021 1.749063 CATGAGCCACTGCACATCATT 59.251 47.619 0.00 0.00 44.09 2.57
2679 3123 7.147828 CGATATATGGGCCTATCAGAGAAAGAA 60.148 40.741 4.16 0.00 0.00 2.52
2720 3164 4.883585 TCATGGAGAACATTAAGGTGATGC 59.116 41.667 0.00 0.00 37.84 3.91
2874 3323 0.545309 TCTGCCCCACTGCTAGAAGT 60.545 55.000 0.00 0.00 0.00 3.01
2959 3408 3.872771 GGAGTTTTTCGGCGGATGTAATA 59.127 43.478 7.21 0.00 0.00 0.98
2966 3415 0.685097 GGCGGATGTAATAGCCAGGA 59.315 55.000 0.00 0.00 45.93 3.86
3068 3517 4.858850 AGATGCACTTGTTGGATTATCCA 58.141 39.130 10.29 10.29 46.61 3.41
3177 5365 5.812127 GCAAGTCTTTTTCAACAGATTTGGT 59.188 36.000 10.97 0.00 37.28 3.67
3322 5512 4.787551 AGTCTAGTCCAGTCCTGTCATAG 58.212 47.826 0.00 0.00 0.00 2.23
3434 5694 4.278419 AGTTGTGACCTTTGTTATGGCTTC 59.722 41.667 0.00 0.00 0.00 3.86
3442 5702 6.592870 ACCTTTGTTATGGCTTCTATCCTAC 58.407 40.000 0.00 0.00 0.00 3.18
3501 5769 3.322541 TGGACAACTCAGGTTCGTAATCA 59.677 43.478 0.00 0.00 32.73 2.57
3653 5926 9.886132 TTTTTCATAGAACTTGACTATAGACCC 57.114 33.333 6.78 0.00 0.00 4.46
3654 5927 8.603898 TTTCATAGAACTTGACTATAGACCCA 57.396 34.615 6.78 0.00 0.00 4.51
3655 5928 8.603898 TTCATAGAACTTGACTATAGACCCAA 57.396 34.615 6.78 6.75 0.00 4.12
3656 5929 8.603898 TCATAGAACTTGACTATAGACCCAAA 57.396 34.615 6.78 0.00 0.00 3.28
3657 5930 8.696374 TCATAGAACTTGACTATAGACCCAAAG 58.304 37.037 6.78 3.28 0.00 2.77
3658 5931 6.936968 AGAACTTGACTATAGACCCAAAGT 57.063 37.500 6.78 3.90 0.00 2.66
3659 5932 6.702329 AGAACTTGACTATAGACCCAAAGTG 58.298 40.000 6.78 0.07 0.00 3.16
3660 5933 5.422214 ACTTGACTATAGACCCAAAGTGG 57.578 43.478 6.78 0.00 37.25 4.00
3661 5934 4.844655 ACTTGACTATAGACCCAAAGTGGT 59.155 41.667 6.78 0.00 42.79 4.16
3666 5939 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3667 5940 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3668 5941 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3669 5942 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3670 5943 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3671 5944 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3672 5945 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3673 5946 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3674 5947 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3675 5948 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3676 5949 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3677 5950 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3678 5951 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3679 5952 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3680 5953 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3681 5954 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3682 5955 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3683 5956 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3684 5957 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3685 5958 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3710 5983 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3711 5984 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3712 5985 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3713 5986 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3714 5987 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3715 5988 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3716 5989 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3717 5990 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3718 5991 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3719 5992 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3897 6955 3.751518 TCTGTCTCAAGGGGTAAAAAGC 58.248 45.455 0.00 0.00 0.00 3.51
4011 7213 3.767131 TCGGTTACTCATCCTCAATGTCA 59.233 43.478 0.00 0.00 36.68 3.58
4193 7413 2.202623 GCTGGGCACGAGACTACG 60.203 66.667 0.00 0.00 35.72 3.51
4531 7775 2.141517 CGATCATTCAGACAGCCATCC 58.858 52.381 0.00 0.00 0.00 3.51
4569 7813 1.224003 AGGATGTTTGGGGCCAGGAT 61.224 55.000 4.39 0.00 0.00 3.24
4581 7825 2.436646 CAGGATGCCGGCGAGTTT 60.437 61.111 23.90 3.35 0.00 2.66
4583 7827 2.435938 GGATGCCGGCGAGTTTCA 60.436 61.111 23.90 1.41 0.00 2.69
4602 7846 0.392998 AGCCTGATCGGTTTGCGAAT 60.393 50.000 0.00 0.00 34.25 3.34
4732 7976 1.302033 CGCCTGCTGACCAAGTTCT 60.302 57.895 0.00 0.00 0.00 3.01
4742 7986 2.035961 TGACCAAGTTCTCCTTCTCACG 59.964 50.000 0.00 0.00 0.00 4.35
4867 8113 1.671054 GTAGCAAGAAGGTGCCGCA 60.671 57.895 0.00 0.00 46.14 5.69
4934 8208 2.279918 AGCGTTGCTTTCGTCGGT 60.280 55.556 0.00 0.00 33.89 4.69
4935 8209 1.007038 AGCGTTGCTTTCGTCGGTA 60.007 52.632 0.00 0.00 33.89 4.02
4936 8210 1.129209 GCGTTGCTTTCGTCGGTAC 59.871 57.895 0.00 0.00 0.00 3.34
4937 8211 1.280206 GCGTTGCTTTCGTCGGTACT 61.280 55.000 0.00 0.00 0.00 2.73
4938 8212 1.134226 CGTTGCTTTCGTCGGTACTT 58.866 50.000 0.00 0.00 0.00 2.24
4939 8213 1.523934 CGTTGCTTTCGTCGGTACTTT 59.476 47.619 0.00 0.00 0.00 2.66
4940 8214 2.658224 CGTTGCTTTCGTCGGTACTTTG 60.658 50.000 0.00 0.00 0.00 2.77
4941 8215 2.228138 TGCTTTCGTCGGTACTTTGT 57.772 45.000 0.00 0.00 0.00 2.83
4942 8216 1.862201 TGCTTTCGTCGGTACTTTGTG 59.138 47.619 0.00 0.00 0.00 3.33
4943 8217 1.398071 GCTTTCGTCGGTACTTTGTGC 60.398 52.381 0.00 0.00 0.00 4.57
4944 8218 0.854062 TTTCGTCGGTACTTTGTGCG 59.146 50.000 0.00 0.00 0.00 5.34
4945 8219 0.940519 TTCGTCGGTACTTTGTGCGG 60.941 55.000 0.00 0.00 0.00 5.69
4946 8220 1.662446 CGTCGGTACTTTGTGCGGT 60.662 57.895 0.00 0.00 0.00 5.68
4947 8221 1.857364 GTCGGTACTTTGTGCGGTG 59.143 57.895 0.00 0.00 0.00 4.94
4948 8222 1.957186 TCGGTACTTTGTGCGGTGC 60.957 57.895 0.00 0.00 0.00 5.01
4949 8223 2.248135 CGGTACTTTGTGCGGTGCA 61.248 57.895 0.00 0.00 35.60 4.57
4950 8224 1.777030 CGGTACTTTGTGCGGTGCAA 61.777 55.000 0.00 0.00 41.47 4.08
4951 8225 0.040425 GGTACTTTGTGCGGTGCAAG 60.040 55.000 0.00 0.00 41.47 4.01
4962 8236 1.398390 GCGGTGCAAGATTCAGTAAGG 59.602 52.381 0.00 0.00 0.00 2.69
4973 8247 7.308830 GCAAGATTCAGTAAGGTCAGAAAACAT 60.309 37.037 0.00 0.00 0.00 2.71
4976 8250 7.939039 AGATTCAGTAAGGTCAGAAAACATTGA 59.061 33.333 0.00 0.00 0.00 2.57
5036 8591 6.372659 CGTATCTCCCCCAAATGATATTTCTG 59.627 42.308 0.00 0.00 0.00 3.02
5069 8624 5.351458 ACCAATTCTTTGCTCAAACTGAAC 58.649 37.500 0.00 0.00 0.00 3.18
5130 8693 1.545841 GTTTCCTCGGGCTCCATTTT 58.454 50.000 0.00 0.00 0.00 1.82
5131 8694 2.619590 GGTTTCCTCGGGCTCCATTTTA 60.620 50.000 0.00 0.00 0.00 1.52
5143 8709 7.067251 TCGGGCTCCATTTTAATTATAAAACGT 59.933 33.333 0.00 0.00 42.22 3.99
5148 8714 9.377383 CTCCATTTTAATTATAAAACGTAGCCG 57.623 33.333 0.00 0.00 42.22 5.52
5183 8749 0.396417 CTCAGGTCGGACCCAGAGAT 60.396 60.000 29.40 9.42 41.03 2.75
5184 8750 0.395862 TCAGGTCGGACCCAGAGATC 60.396 60.000 23.21 0.00 39.75 2.75
5189 8755 1.035932 TCGGACCCAGAGATCGAACC 61.036 60.000 0.00 0.00 0.00 3.62
5210 8776 3.132824 CCAAGGCCAGGTTCAAATTATCC 59.867 47.826 5.01 0.00 0.00 2.59
5295 8861 2.821378 TGGGATGCAGTTGACATTTCTG 59.179 45.455 0.00 0.00 0.00 3.02
5313 8879 4.521130 TCTGCAGACACTTTCGAATAGT 57.479 40.909 13.74 2.90 0.00 2.12
5327 8893 3.827302 TCGAATAGTAGCCCTGATCCTTC 59.173 47.826 0.00 0.00 0.00 3.46
5339 8905 5.393896 GCCCTGATCCTTCTCATTTTGAAAG 60.394 44.000 0.00 0.00 0.00 2.62
5340 8906 5.713861 CCCTGATCCTTCTCATTTTGAAAGT 59.286 40.000 0.00 0.00 0.00 2.66
5355 8921 2.028112 TGAAAGTGATCAGGGAGGAACG 60.028 50.000 0.00 0.00 0.00 3.95
5356 8922 0.250513 AAGTGATCAGGGAGGAACGC 59.749 55.000 0.00 0.00 0.00 4.84
5357 8923 0.904865 AGTGATCAGGGAGGAACGCA 60.905 55.000 0.00 0.00 0.00 5.24
5358 8924 0.741221 GTGATCAGGGAGGAACGCAC 60.741 60.000 0.00 0.00 0.00 5.34
5362 8928 3.241530 AGGGAGGAACGCACTGCA 61.242 61.111 1.11 0.00 43.04 4.41
5363 8929 2.281484 GGGAGGAACGCACTGCAA 60.281 61.111 1.11 0.00 0.00 4.08
5364 8930 1.896660 GGGAGGAACGCACTGCAAA 60.897 57.895 1.11 0.00 0.00 3.68
5365 8931 1.452145 GGGAGGAACGCACTGCAAAA 61.452 55.000 1.11 0.00 0.00 2.44
5366 8932 0.040067 GGAGGAACGCACTGCAAAAG 60.040 55.000 1.11 0.00 0.00 2.27
5367 8933 0.040067 GAGGAACGCACTGCAAAAGG 60.040 55.000 1.11 0.00 0.00 3.11
5368 8934 0.751643 AGGAACGCACTGCAAAAGGT 60.752 50.000 1.11 0.00 0.00 3.50
5369 8935 0.317854 GGAACGCACTGCAAAAGGTC 60.318 55.000 1.11 0.00 0.00 3.85
5370 8936 0.663153 GAACGCACTGCAAAAGGTCT 59.337 50.000 1.11 0.00 0.00 3.85
5371 8937 1.871039 GAACGCACTGCAAAAGGTCTA 59.129 47.619 1.11 0.00 0.00 2.59
5372 8938 2.185004 ACGCACTGCAAAAGGTCTAT 57.815 45.000 1.11 0.00 0.00 1.98
5373 8939 2.504367 ACGCACTGCAAAAGGTCTATT 58.496 42.857 1.11 0.00 0.00 1.73
5374 8940 2.226437 ACGCACTGCAAAAGGTCTATTG 59.774 45.455 1.11 0.00 0.00 1.90
5379 8945 1.852633 GCAAAAGGTCTATTGCCCCT 58.147 50.000 0.00 0.00 44.72 4.79
5380 8946 3.012934 GCAAAAGGTCTATTGCCCCTA 57.987 47.619 0.00 0.00 44.72 3.53
5389 8955 1.637553 CTATTGCCCCTAGCCCATCAT 59.362 52.381 0.00 0.00 42.71 2.45
5413 8979 7.687941 TCCATTTGAAACAATCTCTCTTACC 57.312 36.000 0.00 0.00 0.00 2.85
5414 8980 7.461749 TCCATTTGAAACAATCTCTCTTACCT 58.538 34.615 0.00 0.00 0.00 3.08
5429 9004 3.452627 TCTTACCTCTCAATCTCAAGCCC 59.547 47.826 0.00 0.00 0.00 5.19
5434 9009 3.204526 CTCTCAATCTCAAGCCCATGAC 58.795 50.000 0.00 0.00 0.00 3.06
5443 9018 2.373169 TCAAGCCCATGACTCTCAAACT 59.627 45.455 0.00 0.00 0.00 2.66
5445 9020 2.787994 AGCCCATGACTCTCAAACTTG 58.212 47.619 0.00 0.00 0.00 3.16
5487 9318 5.009610 TGTTTCCTTGTTGAAATCTACTGCC 59.990 40.000 0.00 0.00 36.68 4.85
5489 9320 4.922206 TCCTTGTTGAAATCTACTGCCAT 58.078 39.130 0.00 0.00 0.00 4.40
5491 9322 4.701651 CCTTGTTGAAATCTACTGCCATGA 59.298 41.667 0.00 0.00 0.00 3.07
5492 9323 5.163683 CCTTGTTGAAATCTACTGCCATGAG 60.164 44.000 0.00 0.00 0.00 2.90
5493 9324 4.264253 TGTTGAAATCTACTGCCATGAGG 58.736 43.478 0.00 0.00 38.23 3.86
5513 9348 2.365582 GGTGTGGTCAGAAGTTGTTGT 58.634 47.619 0.00 0.00 0.00 3.32
5518 9353 2.423185 TGGTCAGAAGTTGTTGTTGCAG 59.577 45.455 0.00 0.00 0.00 4.41
5522 9357 3.505680 TCAGAAGTTGTTGTTGCAGTTGT 59.494 39.130 0.00 0.00 0.00 3.32
5523 9358 3.853671 CAGAAGTTGTTGTTGCAGTTGTC 59.146 43.478 0.00 0.00 0.00 3.18
5534 9369 0.319555 GCAGTTGTCGTGGCTGTAGA 60.320 55.000 0.00 0.00 33.18 2.59
5535 9370 1.872237 GCAGTTGTCGTGGCTGTAGAA 60.872 52.381 0.00 0.00 33.18 2.10
5536 9371 2.061773 CAGTTGTCGTGGCTGTAGAAG 58.938 52.381 0.00 0.00 0.00 2.85
5544 9379 3.260884 TCGTGGCTGTAGAAGGAAGAAAT 59.739 43.478 0.00 0.00 0.00 2.17
5550 9385 5.105146 GGCTGTAGAAGGAAGAAATCTCAGA 60.105 44.000 0.00 0.00 0.00 3.27
5553 9388 7.224557 GCTGTAGAAGGAAGAAATCTCAGATTC 59.775 40.741 0.00 0.00 0.00 2.52
5555 9390 6.633325 AGAAGGAAGAAATCTCAGATTCCA 57.367 37.500 0.00 0.00 41.56 3.53
5558 9393 5.988287 AGGAAGAAATCTCAGATTCCAGTC 58.012 41.667 0.00 0.00 41.56 3.51
5573 9408 6.879458 AGATTCCAGTCAGCGTTAACTAAAAT 59.121 34.615 3.71 0.00 0.00 1.82
5579 9421 5.638234 AGTCAGCGTTAACTAAAATCCTGTC 59.362 40.000 3.71 0.00 0.00 3.51
5590 9432 7.745620 ACTAAAATCCTGTCCAACTTTACTG 57.254 36.000 0.00 0.00 0.00 2.74
5628 9470 3.447229 TCTCATTCGACCATGTGAAGCTA 59.553 43.478 0.00 0.00 0.00 3.32
5642 9499 3.489785 GTGAAGCTACGGTTAATCCATCG 59.510 47.826 0.00 0.00 35.57 3.84
5661 9518 0.879400 GCATGGTCTCTGATCCAGCG 60.879 60.000 0.00 3.65 37.14 5.18
5671 9528 0.391661 TGATCCAGCGGTTGAAGCTC 60.392 55.000 0.00 0.00 44.06 4.09
5679 9540 1.363744 CGGTTGAAGCTCTCCATCAC 58.636 55.000 0.00 0.00 0.00 3.06
5693 9554 5.624159 TCTCCATCACAGCCCAATTAATAG 58.376 41.667 0.00 0.00 0.00 1.73
5697 9561 4.164843 TCACAGCCCAATTAATAGGACC 57.835 45.455 8.33 0.00 0.00 4.46
5701 9565 3.655777 CAGCCCAATTAATAGGACCCCTA 59.344 47.826 8.33 0.00 40.71 3.53
5705 9569 4.020485 CCCAATTAATAGGACCCCTAGACG 60.020 50.000 0.00 0.00 39.70 4.18
5714 9578 2.618053 GACCCCTAGACGTTTCATGTG 58.382 52.381 0.00 0.00 0.00 3.21
5720 9584 5.163754 CCCCTAGACGTTTCATGTGAAAATC 60.164 44.000 9.55 10.23 44.58 2.17
5723 9587 6.147821 CCTAGACGTTTCATGTGAAAATCTGT 59.852 38.462 21.89 14.01 44.58 3.41
5726 9590 6.481976 AGACGTTTCATGTGAAAATCTGTACA 59.518 34.615 16.63 0.00 44.58 2.90
5729 9593 7.077605 CGTTTCATGTGAAAATCTGTACATGT 58.922 34.615 9.55 2.69 46.37 3.21
5730 9594 7.591057 CGTTTCATGTGAAAATCTGTACATGTT 59.409 33.333 2.30 0.00 46.37 2.71
5731 9595 8.693504 GTTTCATGTGAAAATCTGTACATGTTG 58.306 33.333 2.30 0.00 46.37 3.33
5732 9596 7.742556 TCATGTGAAAATCTGTACATGTTGA 57.257 32.000 2.30 0.65 46.37 3.18
5733 9597 8.339344 TCATGTGAAAATCTGTACATGTTGAT 57.661 30.769 2.30 3.26 46.37 2.57
5734 9598 8.453320 TCATGTGAAAATCTGTACATGTTGATC 58.547 33.333 2.30 0.00 46.37 2.92
5735 9599 7.144722 TGTGAAAATCTGTACATGTTGATCC 57.855 36.000 2.30 1.21 0.00 3.36
5736 9600 6.150976 TGTGAAAATCTGTACATGTTGATCCC 59.849 38.462 2.30 0.91 0.00 3.85
5737 9601 5.652014 TGAAAATCTGTACATGTTGATCCCC 59.348 40.000 2.30 0.60 0.00 4.81
5738 9602 3.864789 ATCTGTACATGTTGATCCCCC 57.135 47.619 2.30 0.00 0.00 5.40
5739 9603 2.556766 TCTGTACATGTTGATCCCCCA 58.443 47.619 2.30 0.00 0.00 4.96
5740 9604 2.916269 TCTGTACATGTTGATCCCCCAA 59.084 45.455 2.30 0.00 0.00 4.12
5741 9605 3.016736 CTGTACATGTTGATCCCCCAAC 58.983 50.000 2.30 0.00 44.84 3.77
5742 9606 2.014128 GTACATGTTGATCCCCCAACG 58.986 52.381 2.30 0.00 46.89 4.10
5743 9607 0.695924 ACATGTTGATCCCCCAACGA 59.304 50.000 0.00 0.00 46.89 3.85
5744 9608 1.074727 ACATGTTGATCCCCCAACGAA 59.925 47.619 0.00 0.00 46.89 3.85
5745 9609 2.166829 CATGTTGATCCCCCAACGAAA 58.833 47.619 0.00 0.00 46.89 3.46
5746 9610 2.595750 TGTTGATCCCCCAACGAAAT 57.404 45.000 0.00 0.00 46.89 2.17
5747 9611 2.442413 TGTTGATCCCCCAACGAAATC 58.558 47.619 0.00 0.00 46.89 2.17
5748 9612 1.749063 GTTGATCCCCCAACGAAATCC 59.251 52.381 0.00 0.00 37.31 3.01
5749 9613 0.995803 TGATCCCCCAACGAAATCCA 59.004 50.000 0.00 0.00 0.00 3.41
5750 9614 1.064758 TGATCCCCCAACGAAATCCAG 60.065 52.381 0.00 0.00 0.00 3.86
5751 9615 0.258774 ATCCCCCAACGAAATCCAGG 59.741 55.000 0.00 0.00 0.00 4.45
5752 9616 1.379843 CCCCCAACGAAATCCAGGG 60.380 63.158 0.00 0.00 39.29 4.45
5753 9617 4.337013 CCCAACGAAATCCAGGGG 57.663 61.111 0.00 0.00 35.83 4.79
5754 9618 2.052104 CCCAACGAAATCCAGGGGC 61.052 63.158 0.00 0.00 35.83 5.80
5755 9619 2.052104 CCAACGAAATCCAGGGGCC 61.052 63.158 0.00 0.00 0.00 5.80
5756 9620 2.045340 AACGAAATCCAGGGGCCG 60.045 61.111 0.00 0.00 0.00 6.13
5757 9621 3.638592 AACGAAATCCAGGGGCCGG 62.639 63.158 0.00 0.00 0.00 6.13
5758 9622 4.109675 CGAAATCCAGGGGCCGGT 62.110 66.667 1.90 0.00 0.00 5.28
5759 9623 2.737881 CGAAATCCAGGGGCCGGTA 61.738 63.158 1.90 0.00 0.00 4.02
5760 9624 1.610873 GAAATCCAGGGGCCGGTAA 59.389 57.895 1.90 0.00 0.00 2.85
5761 9625 0.185175 GAAATCCAGGGGCCGGTAAT 59.815 55.000 1.90 0.00 0.00 1.89
5762 9626 1.422402 GAAATCCAGGGGCCGGTAATA 59.578 52.381 1.90 0.00 0.00 0.98
5763 9627 0.769247 AATCCAGGGGCCGGTAATAC 59.231 55.000 1.90 0.00 0.00 1.89
5764 9628 0.400815 ATCCAGGGGCCGGTAATACA 60.401 55.000 1.90 0.00 0.00 2.29
5765 9629 1.147600 CCAGGGGCCGGTAATACAC 59.852 63.158 1.90 0.00 0.00 2.90
5766 9630 1.227438 CAGGGGCCGGTAATACACG 60.227 63.158 1.90 0.00 0.00 4.49
5767 9631 2.589724 GGGGCCGGTAATACACGC 60.590 66.667 1.90 0.00 0.00 5.34
5768 9632 2.187424 GGGCCGGTAATACACGCA 59.813 61.111 1.90 0.00 0.00 5.24
5769 9633 1.885850 GGGCCGGTAATACACGCAG 60.886 63.158 1.90 0.00 0.00 5.18
5770 9634 2.531376 GGCCGGTAATACACGCAGC 61.531 63.158 1.90 0.00 0.00 5.25
5771 9635 2.867091 GCCGGTAATACACGCAGCG 61.867 63.158 14.82 14.82 0.00 5.18
5772 9636 2.235016 CCGGTAATACACGCAGCGG 61.235 63.158 21.15 10.75 45.55 5.52
5773 9637 2.867091 CGGTAATACACGCAGCGGC 61.867 63.158 21.15 0.00 0.00 6.53
5774 9638 2.531376 GGTAATACACGCAGCGGCC 61.531 63.158 21.15 5.57 36.38 6.13
5775 9639 1.520787 GTAATACACGCAGCGGCCT 60.521 57.895 21.15 2.88 36.38 5.19
5776 9640 1.520564 TAATACACGCAGCGGCCTG 60.521 57.895 21.15 11.18 42.13 4.85
5777 9641 1.950973 TAATACACGCAGCGGCCTGA 61.951 55.000 21.15 0.00 41.77 3.86
5778 9642 2.593468 AATACACGCAGCGGCCTGAT 62.593 55.000 21.15 1.88 41.77 2.90
5779 9643 2.978452 ATACACGCAGCGGCCTGATC 62.978 60.000 21.15 0.00 41.77 2.92
5783 9647 4.166888 GCAGCGGCCTGATCCAGA 62.167 66.667 0.00 0.00 41.77 3.86
5784 9648 2.108566 CAGCGGCCTGATCCAGAG 59.891 66.667 0.00 0.00 41.77 3.35
5785 9649 3.859414 AGCGGCCTGATCCAGAGC 61.859 66.667 0.00 0.00 32.44 4.09
5786 9650 3.859414 GCGGCCTGATCCAGAGCT 61.859 66.667 0.00 0.00 32.44 4.09
5787 9651 2.108566 CGGCCTGATCCAGAGCTG 59.891 66.667 0.00 0.00 32.44 4.24
5800 9664 2.856222 CAGAGCTGGAAGAAAACACCT 58.144 47.619 0.00 0.00 34.07 4.00
5801 9665 2.810852 CAGAGCTGGAAGAAAACACCTC 59.189 50.000 0.00 0.00 34.07 3.85
5802 9666 2.708325 AGAGCTGGAAGAAAACACCTCT 59.292 45.455 0.00 0.00 34.07 3.69
5803 9667 3.137360 AGAGCTGGAAGAAAACACCTCTT 59.863 43.478 0.00 0.00 35.82 2.85
5804 9668 3.885901 GAGCTGGAAGAAAACACCTCTTT 59.114 43.478 0.00 0.00 33.24 2.52
5805 9669 4.281657 AGCTGGAAGAAAACACCTCTTTT 58.718 39.130 0.00 0.00 33.24 2.27
5806 9670 4.098501 AGCTGGAAGAAAACACCTCTTTTG 59.901 41.667 0.00 0.00 33.24 2.44
5807 9671 4.097892 GCTGGAAGAAAACACCTCTTTTGA 59.902 41.667 0.00 0.00 33.24 2.69
5808 9672 5.576447 TGGAAGAAAACACCTCTTTTGAC 57.424 39.130 0.00 0.00 33.24 3.18
5809 9673 4.401202 TGGAAGAAAACACCTCTTTTGACC 59.599 41.667 0.00 0.00 33.24 4.02
5810 9674 4.202121 GGAAGAAAACACCTCTTTTGACCC 60.202 45.833 0.00 0.00 33.24 4.46
5811 9675 3.976015 AGAAAACACCTCTTTTGACCCA 58.024 40.909 0.00 0.00 0.00 4.51
5812 9676 4.546674 AGAAAACACCTCTTTTGACCCAT 58.453 39.130 0.00 0.00 0.00 4.00
5813 9677 4.584743 AGAAAACACCTCTTTTGACCCATC 59.415 41.667 0.00 0.00 0.00 3.51
5814 9678 3.593442 AACACCTCTTTTGACCCATCA 57.407 42.857 0.00 0.00 0.00 3.07
5815 9679 2.863809 ACACCTCTTTTGACCCATCAC 58.136 47.619 0.00 0.00 33.38 3.06
5816 9680 2.174639 ACACCTCTTTTGACCCATCACA 59.825 45.455 0.00 0.00 33.38 3.58
5817 9681 3.221771 CACCTCTTTTGACCCATCACAA 58.778 45.455 0.00 0.00 33.38 3.33
5818 9682 3.254166 CACCTCTTTTGACCCATCACAAG 59.746 47.826 0.00 0.00 41.93 3.16
5819 9683 2.821969 CCTCTTTTGACCCATCACAAGG 59.178 50.000 3.96 0.00 41.23 3.61
5820 9684 3.498481 CCTCTTTTGACCCATCACAAGGA 60.498 47.826 3.96 0.00 41.23 3.36
5821 9685 3.754965 TCTTTTGACCCATCACAAGGAG 58.245 45.455 3.96 0.00 41.23 3.69
5822 9686 1.909700 TTTGACCCATCACAAGGAGC 58.090 50.000 0.00 0.00 33.38 4.70
5823 9687 0.770499 TTGACCCATCACAAGGAGCA 59.230 50.000 0.00 0.00 33.38 4.26
5824 9688 0.325933 TGACCCATCACAAGGAGCAG 59.674 55.000 0.00 0.00 0.00 4.24
5825 9689 0.615331 GACCCATCACAAGGAGCAGA 59.385 55.000 0.00 0.00 0.00 4.26
5826 9690 0.326264 ACCCATCACAAGGAGCAGAC 59.674 55.000 0.00 0.00 0.00 3.51
5827 9691 0.325933 CCCATCACAAGGAGCAGACA 59.674 55.000 0.00 0.00 0.00 3.41
5828 9692 1.678123 CCCATCACAAGGAGCAGACAG 60.678 57.143 0.00 0.00 0.00 3.51
5829 9693 1.002888 CCATCACAAGGAGCAGACAGT 59.997 52.381 0.00 0.00 0.00 3.55
5830 9694 2.074576 CATCACAAGGAGCAGACAGTG 58.925 52.381 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 85 0.608130 ACTCTGCAGTAATCACGCCA 59.392 50.000 14.67 0.00 0.00 5.69
192 201 1.798223 TCGGAAGCACGACAAAGATTG 59.202 47.619 0.00 0.00 38.06 2.67
270 279 4.082571 CCTTGTCCAAACTCAAGCCATTAG 60.083 45.833 0.00 0.00 39.47 1.73
273 282 2.242043 CCTTGTCCAAACTCAAGCCAT 58.758 47.619 0.00 0.00 39.47 4.40
307 322 5.338381 CCCACCATGACTACAAGTCTACAAT 60.338 44.000 8.42 0.00 45.27 2.71
358 373 5.054477 ACACGACGCCTTTTAGCATATAAT 58.946 37.500 0.00 0.00 0.00 1.28
520 536 0.110056 GACAACACCAGCAGCAATCG 60.110 55.000 0.00 0.00 0.00 3.34
551 567 8.716646 AAAAAGTTTGAAAACCCTGTATCAAG 57.283 30.769 2.34 0.00 39.71 3.02
609 625 2.106684 GGGGAGAAAAGGTGACTGAACT 59.893 50.000 0.00 0.00 42.68 3.01
613 629 1.545651 GGTGGGGAGAAAAGGTGACTG 60.546 57.143 0.00 0.00 42.68 3.51
651 667 0.917533 AATGGTGCAGCTCATCCTCT 59.082 50.000 18.08 0.00 0.00 3.69
682 698 5.006386 ACCTAAAAGAATGGACTCTTGCAG 58.994 41.667 0.00 0.00 35.79 4.41
740 756 5.222048 ACAAAGGAGGCAAACTTATACCTGA 60.222 40.000 0.00 0.00 30.95 3.86
750 766 9.188588 GTATACTTTTAAACAAAGGAGGCAAAC 57.811 33.333 0.00 0.00 0.00 2.93
845 862 3.159472 TGTGCTTTCTGATCTTGGCATT 58.841 40.909 0.00 0.00 32.38 3.56
908 925 8.701895 TCATCCGTTTTACAACTCTAGGATATT 58.298 33.333 0.00 0.00 31.27 1.28
1242 1439 2.121948 TCCCTCCAGATCATGAAGTGG 58.878 52.381 17.10 17.10 0.00 4.00
1331 1550 5.163893 ACTCGTACACAAAGAACAAGTGTTG 60.164 40.000 0.42 0.00 43.40 3.33
1347 1566 7.874016 ACTAACATACCAAAAATGACTCGTACA 59.126 33.333 0.00 0.00 0.00 2.90
1348 1567 8.248117 ACTAACATACCAAAAATGACTCGTAC 57.752 34.615 0.00 0.00 0.00 3.67
1363 1582 6.775708 TGGGCCATCTAATTACTAACATACC 58.224 40.000 0.00 0.00 0.00 2.73
1374 1593 3.909427 ACATCCATGGGCCATCTAATT 57.091 42.857 18.16 0.00 0.00 1.40
1462 1813 7.432869 ACAAAGCATAAATAGCAACAGAAACA 58.567 30.769 0.00 0.00 0.00 2.83
1465 1816 8.105097 TGTACAAAGCATAAATAGCAACAGAA 57.895 30.769 0.00 0.00 0.00 3.02
1533 1889 9.331282 AGTGAGTATAATGTGGCTTTATCTTTC 57.669 33.333 0.00 0.00 0.00 2.62
1624 1983 9.627123 CTTTTGAGAGACCATTTATATACCCAA 57.373 33.333 0.00 0.00 0.00 4.12
1708 2068 1.935873 CGATCGCAACATCAGTCCATT 59.064 47.619 0.26 0.00 0.00 3.16
1732 2092 3.983344 GCTCAAATCCACACACAATTCAC 59.017 43.478 0.00 0.00 0.00 3.18
1733 2093 3.635836 TGCTCAAATCCACACACAATTCA 59.364 39.130 0.00 0.00 0.00 2.57
1788 2148 4.901868 TCTTATGTAGCTTTGGGTTCGTT 58.098 39.130 0.00 0.00 0.00 3.85
1850 2210 2.110967 CGGCTCAGATGCAACTGGG 61.111 63.158 22.19 20.65 40.91 4.45
1912 2272 6.374417 AACCTAAACCTGAGCTTCAATCTA 57.626 37.500 0.00 0.00 0.00 1.98
1916 2283 3.070446 TCGAACCTAAACCTGAGCTTCAA 59.930 43.478 0.00 0.00 0.00 2.69
2105 2510 2.644676 GCCAGGTTCCAAGAGGATTAC 58.355 52.381 0.00 0.00 45.26 1.89
2110 2515 1.301293 GAGGCCAGGTTCCAAGAGG 59.699 63.158 5.01 0.00 0.00 3.69
2194 2601 4.336993 TCACTTCACGCATTTTGTTAAGGT 59.663 37.500 0.00 0.00 0.00 3.50
2255 2664 8.225603 AGAAATGCACGGTCTTCATATAAATT 57.774 30.769 0.00 0.00 0.00 1.82
2314 2747 8.729805 TGGCAAAAATTTCAACATTACTTTCT 57.270 26.923 0.00 0.00 0.00 2.52
2402 2840 8.928270 AAATACAGCACAGATAAGTAGTACAC 57.072 34.615 2.52 0.00 0.00 2.90
2468 2912 5.127031 CCGACCCTATTCCAAATTCACAATT 59.873 40.000 0.00 0.00 0.00 2.32
2515 2959 4.003648 CAGAAACATACAGAACCTCCACC 58.996 47.826 0.00 0.00 0.00 4.61
2522 2966 4.003648 CCAGGGTCAGAAACATACAGAAC 58.996 47.826 0.00 0.00 0.00 3.01
2618 3062 1.589716 ATGCCTTCACCAAAGAGCGC 61.590 55.000 0.00 0.00 37.12 5.92
2679 3123 4.022589 CCATGAAGAACTCTTGTGCAATGT 60.023 41.667 0.00 0.00 36.11 2.71
2707 3151 3.285484 AGAAGCTGGCATCACCTTAATG 58.715 45.455 0.00 0.00 40.22 1.90
2720 3164 8.844244 ACTCATATTTAAGCATTAAGAAGCTGG 58.156 33.333 0.00 0.00 42.24 4.85
2760 3209 3.127548 CCAACTATAATGCCGGATCATGC 59.872 47.826 5.05 0.00 0.00 4.06
2874 3323 4.830600 TGTCGTCAAGCATACTATCCCATA 59.169 41.667 0.00 0.00 0.00 2.74
2966 3415 2.676076 GAAATCGCTGCCAAAACATGT 58.324 42.857 0.00 0.00 0.00 3.21
3403 5660 8.567948 CATAACAAAGGTCACAACTGAGTAAAT 58.432 33.333 0.00 0.00 0.00 1.40
3442 5702 7.067372 TGCATTGTCAGTCAAGGGAAATATAAG 59.933 37.037 0.00 0.00 39.55 1.73
3501 5769 3.652869 CCATATCAGAATACACCCCCAGT 59.347 47.826 0.00 0.00 0.00 4.00
3630 5903 8.603898 TTGGGTCTATAGTCAAGTTCTATGAA 57.396 34.615 0.00 0.00 31.64 2.57
3631 5904 8.603898 TTTGGGTCTATAGTCAAGTTCTATGA 57.396 34.615 0.00 0.00 31.64 2.15
3632 5905 8.478877 ACTTTGGGTCTATAGTCAAGTTCTATG 58.521 37.037 0.00 0.00 31.64 2.23
3633 5906 8.478877 CACTTTGGGTCTATAGTCAAGTTCTAT 58.521 37.037 0.00 0.00 33.45 1.98
3634 5907 7.093465 CCACTTTGGGTCTATAGTCAAGTTCTA 60.093 40.741 0.00 0.00 32.67 2.10
3635 5908 6.295916 CCACTTTGGGTCTATAGTCAAGTTCT 60.296 42.308 0.00 0.00 32.67 3.01
3636 5909 5.875359 CCACTTTGGGTCTATAGTCAAGTTC 59.125 44.000 0.00 0.00 32.67 3.01
3637 5910 5.309806 ACCACTTTGGGTCTATAGTCAAGTT 59.690 40.000 0.00 0.00 43.37 2.66
3638 5911 4.844655 ACCACTTTGGGTCTATAGTCAAGT 59.155 41.667 0.00 0.00 43.37 3.16
3639 5912 5.422214 ACCACTTTGGGTCTATAGTCAAG 57.578 43.478 0.00 0.00 43.37 3.02
3650 5923 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3651 5924 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3652 5925 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3653 5926 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3654 5927 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3655 5928 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3656 5929 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3657 5930 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3658 5931 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3659 5932 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3660 5933 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3661 5934 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3662 5935 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3663 5936 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3664 5937 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3665 5938 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3666 5939 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3667 5940 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3668 5941 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3680 5953 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3683 5956 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3684 5957 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3685 5958 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3686 5959 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3692 5965 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3693 5966 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3694 5967 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3695 5968 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3696 5969 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3724 5997 9.363763 CGAGTACTCGTAGAAGATATATACCAA 57.636 37.037 32.24 0.00 46.99 3.67
3725 5998 8.923609 CGAGTACTCGTAGAAGATATATACCA 57.076 38.462 32.24 0.00 46.99 3.25
4011 7213 1.101049 CCACGGCTGTGTTCCTTTGT 61.101 55.000 23.77 0.00 44.92 2.83
4039 7241 2.554806 TATGCAATCGTCGTCTTCGT 57.445 45.000 0.00 0.00 38.33 3.85
4130 7350 1.504647 CGATGTAGTCCTCGGCGCTA 61.505 60.000 7.64 0.00 0.00 4.26
4483 7727 2.577059 GATGTCGAGCCCACCGAA 59.423 61.111 0.00 0.00 37.81 4.30
4506 7750 2.621338 GCTGTCTGAATGATCGTTCCA 58.379 47.619 22.07 13.20 0.00 3.53
4518 7762 1.825341 CATCGGGATGGCTGTCTGA 59.175 57.895 0.62 0.00 35.24 3.27
4581 7825 1.741401 CGCAAACCGATCAGGCTGA 60.741 57.895 21.19 21.19 46.52 4.26
4583 7827 0.392998 ATTCGCAAACCGATCAGGCT 60.393 50.000 3.85 0.00 46.81 4.58
4732 7976 3.744719 CGGCGACCGTGAGAAGGA 61.745 66.667 0.00 0.00 42.73 3.36
4867 8113 1.873591 GCGTCACTGTTTTCATCAGGT 59.126 47.619 0.00 0.00 37.25 4.00
4930 8204 1.957186 GCACCGCACAAAGTACCGA 60.957 57.895 0.00 0.00 0.00 4.69
4931 8205 1.777030 TTGCACCGCACAAAGTACCG 61.777 55.000 0.00 0.00 38.71 4.02
4932 8206 0.040425 CTTGCACCGCACAAAGTACC 60.040 55.000 0.00 0.00 38.71 3.34
4933 8207 0.941542 TCTTGCACCGCACAAAGTAC 59.058 50.000 0.00 0.00 38.71 2.73
4934 8208 1.890876 ATCTTGCACCGCACAAAGTA 58.109 45.000 0.00 0.00 38.71 2.24
4935 8209 1.001378 GAATCTTGCACCGCACAAAGT 60.001 47.619 0.00 0.00 38.71 2.66
4936 8210 1.001487 TGAATCTTGCACCGCACAAAG 60.001 47.619 0.00 0.00 38.71 2.77
4937 8211 1.001487 CTGAATCTTGCACCGCACAAA 60.001 47.619 0.00 0.00 38.71 2.83
4938 8212 0.592637 CTGAATCTTGCACCGCACAA 59.407 50.000 0.00 0.00 38.71 3.33
4939 8213 0.534877 ACTGAATCTTGCACCGCACA 60.535 50.000 0.00 0.00 38.71 4.57
4940 8214 1.438651 TACTGAATCTTGCACCGCAC 58.561 50.000 0.00 0.00 38.71 5.34
4941 8215 2.076100 CTTACTGAATCTTGCACCGCA 58.924 47.619 0.00 0.00 36.47 5.69
4942 8216 1.398390 CCTTACTGAATCTTGCACCGC 59.602 52.381 0.00 0.00 0.00 5.68
4943 8217 2.673368 GACCTTACTGAATCTTGCACCG 59.327 50.000 0.00 0.00 0.00 4.94
4944 8218 3.674997 TGACCTTACTGAATCTTGCACC 58.325 45.455 0.00 0.00 0.00 5.01
4945 8219 4.569943 TCTGACCTTACTGAATCTTGCAC 58.430 43.478 0.00 0.00 0.00 4.57
4946 8220 4.890158 TCTGACCTTACTGAATCTTGCA 57.110 40.909 0.00 0.00 0.00 4.08
4947 8221 6.017109 TGTTTTCTGACCTTACTGAATCTTGC 60.017 38.462 0.00 0.00 0.00 4.01
4948 8222 7.496529 TGTTTTCTGACCTTACTGAATCTTG 57.503 36.000 0.00 0.00 0.00 3.02
4949 8223 8.571336 CAATGTTTTCTGACCTTACTGAATCTT 58.429 33.333 0.00 0.00 0.00 2.40
4950 8224 7.939039 TCAATGTTTTCTGACCTTACTGAATCT 59.061 33.333 0.00 0.00 0.00 2.40
4951 8225 8.017946 GTCAATGTTTTCTGACCTTACTGAATC 58.982 37.037 0.00 0.00 36.72 2.52
4962 8236 5.232838 CCTTGCTTTGTCAATGTTTTCTGAC 59.767 40.000 0.92 0.00 41.93 3.51
4973 8247 6.491745 TCAATAACCATACCTTGCTTTGTCAA 59.508 34.615 0.00 0.00 0.00 3.18
4976 8250 6.663093 TCATCAATAACCATACCTTGCTTTGT 59.337 34.615 0.00 0.00 0.00 2.83
5036 8591 5.351458 AGCAAAGAATTGGTTTCTGACAAC 58.649 37.500 0.00 0.00 44.52 3.32
5047 8602 5.594926 AGTTCAGTTTGAGCAAAGAATTGG 58.405 37.500 0.00 0.00 37.02 3.16
5119 8682 9.673454 CTACGTTTTATAATTAAAATGGAGCCC 57.327 33.333 0.00 0.00 43.38 5.19
5123 8686 9.107177 TCGGCTACGTTTTATAATTAAAATGGA 57.893 29.630 0.00 5.64 43.78 3.41
5130 8693 7.824704 TGTTGTCGGCTACGTTTTATAATTA 57.175 32.000 0.00 0.00 41.85 1.40
5131 8694 6.724694 TGTTGTCGGCTACGTTTTATAATT 57.275 33.333 0.00 0.00 41.85 1.40
5143 8709 1.996898 CGCTACAATTGTTGTCGGCTA 59.003 47.619 17.78 0.00 44.12 3.93
5148 8714 2.159653 CCTGAGCGCTACAATTGTTGTC 60.160 50.000 17.78 9.02 44.12 3.18
5183 8749 3.246687 AACCTGGCCTTGGTTCGA 58.753 55.556 22.39 0.00 43.60 3.71
5189 8755 3.181487 CGGATAATTTGAACCTGGCCTTG 60.181 47.826 3.32 0.00 0.00 3.61
5210 8776 1.269166 GAGTCGGCACAATCAGTACG 58.731 55.000 0.00 0.00 0.00 3.67
5295 8861 3.552294 GGCTACTATTCGAAAGTGTCTGC 59.448 47.826 17.66 15.03 0.00 4.26
5313 8879 4.474651 TCAAAATGAGAAGGATCAGGGCTA 59.525 41.667 0.00 0.00 31.44 3.93
5327 8893 5.125097 CCTCCCTGATCACTTTCAAAATGAG 59.875 44.000 0.00 0.00 0.00 2.90
5339 8905 0.741221 GTGCGTTCCTCCCTGATCAC 60.741 60.000 0.00 0.00 0.00 3.06
5340 8906 0.904865 AGTGCGTTCCTCCCTGATCA 60.905 55.000 0.00 0.00 0.00 2.92
5355 8921 2.599659 GCAATAGACCTTTTGCAGTGC 58.400 47.619 8.58 8.58 43.68 4.40
5356 8922 2.094545 GGGCAATAGACCTTTTGCAGTG 60.095 50.000 20.78 0.00 45.22 3.66
5357 8923 2.171003 GGGCAATAGACCTTTTGCAGT 58.829 47.619 20.78 0.00 45.22 4.40
5358 8924 1.478105 GGGGCAATAGACCTTTTGCAG 59.522 52.381 20.78 0.00 45.22 4.41
5359 8925 1.077005 AGGGGCAATAGACCTTTTGCA 59.923 47.619 20.78 0.00 45.22 4.08
5360 8926 1.852633 AGGGGCAATAGACCTTTTGC 58.147 50.000 14.12 14.12 45.05 3.68
5361 8927 2.952310 GCTAGGGGCAATAGACCTTTTG 59.048 50.000 0.00 0.00 45.05 2.44
5362 8928 2.091830 GGCTAGGGGCAATAGACCTTTT 60.092 50.000 0.00 0.00 45.05 2.27
5363 8929 1.495148 GGCTAGGGGCAATAGACCTTT 59.505 52.381 0.00 0.00 45.05 3.11
5364 8930 1.141185 GGCTAGGGGCAATAGACCTT 58.859 55.000 0.00 0.00 45.05 3.50
5365 8931 0.768609 GGGCTAGGGGCAATAGACCT 60.769 60.000 11.78 0.00 44.04 3.85
5366 8932 1.761822 GGGCTAGGGGCAATAGACC 59.238 63.158 4.51 4.51 44.93 3.85
5367 8933 1.003696 GATGGGCTAGGGGCAATAGAC 59.996 57.143 0.00 0.00 44.01 2.59
5368 8934 1.362224 GATGGGCTAGGGGCAATAGA 58.638 55.000 0.00 0.00 44.01 1.98
5369 8935 1.067295 TGATGGGCTAGGGGCAATAG 58.933 55.000 0.00 0.00 44.01 1.73
5370 8936 1.635487 GATGATGGGCTAGGGGCAATA 59.365 52.381 0.00 0.00 44.01 1.90
5371 8937 0.407139 GATGATGGGCTAGGGGCAAT 59.593 55.000 0.00 0.00 44.01 3.56
5372 8938 1.719063 GGATGATGGGCTAGGGGCAA 61.719 60.000 0.00 0.00 44.01 4.52
5373 8939 2.156098 GGATGATGGGCTAGGGGCA 61.156 63.158 0.00 0.00 44.01 5.36
5374 8940 1.504275 ATGGATGATGGGCTAGGGGC 61.504 60.000 0.00 0.00 40.90 5.80
5375 8941 1.078955 AATGGATGATGGGCTAGGGG 58.921 55.000 0.00 0.00 0.00 4.79
5376 8942 2.108776 TCAAATGGATGATGGGCTAGGG 59.891 50.000 0.00 0.00 0.00 3.53
5377 8943 3.513909 TCAAATGGATGATGGGCTAGG 57.486 47.619 0.00 0.00 0.00 3.02
5378 8944 4.646040 TGTTTCAAATGGATGATGGGCTAG 59.354 41.667 0.00 0.00 0.00 3.42
5379 8945 4.608269 TGTTTCAAATGGATGATGGGCTA 58.392 39.130 0.00 0.00 0.00 3.93
5380 8946 3.443052 TGTTTCAAATGGATGATGGGCT 58.557 40.909 0.00 0.00 0.00 5.19
5389 8955 7.461749 AGGTAAGAGAGATTGTTTCAAATGGA 58.538 34.615 0.00 0.00 0.00 3.41
5413 8979 3.118334 AGTCATGGGCTTGAGATTGAGAG 60.118 47.826 0.00 0.00 0.00 3.20
5414 8980 2.842496 AGTCATGGGCTTGAGATTGAGA 59.158 45.455 0.00 0.00 0.00 3.27
5429 9004 6.857777 AACTCTTCAAGTTTGAGAGTCATG 57.142 37.500 18.48 0.00 46.26 3.07
5487 9318 1.349026 ACTTCTGACCACACCCTCATG 59.651 52.381 0.00 0.00 0.00 3.07
5489 9320 1.140852 CAACTTCTGACCACACCCTCA 59.859 52.381 0.00 0.00 0.00 3.86
5491 9322 1.213296 ACAACTTCTGACCACACCCT 58.787 50.000 0.00 0.00 0.00 4.34
5492 9323 1.676006 CAACAACTTCTGACCACACCC 59.324 52.381 0.00 0.00 0.00 4.61
5493 9324 2.365582 ACAACAACTTCTGACCACACC 58.634 47.619 0.00 0.00 0.00 4.16
5513 9348 0.179070 TACAGCCACGACAACTGCAA 60.179 50.000 0.00 0.00 34.72 4.08
5518 9353 1.000506 TCCTTCTACAGCCACGACAAC 59.999 52.381 0.00 0.00 0.00 3.32
5522 9357 1.919240 TCTTCCTTCTACAGCCACGA 58.081 50.000 0.00 0.00 0.00 4.35
5523 9358 2.743636 TTCTTCCTTCTACAGCCACG 57.256 50.000 0.00 0.00 0.00 4.94
5534 9369 6.013032 TGACTGGAATCTGAGATTTCTTCCTT 60.013 38.462 14.22 1.90 37.00 3.36
5535 9370 5.486775 TGACTGGAATCTGAGATTTCTTCCT 59.513 40.000 14.22 0.00 37.00 3.36
5536 9371 5.738909 TGACTGGAATCTGAGATTTCTTCC 58.261 41.667 14.22 9.85 36.69 3.46
5544 9379 1.550327 ACGCTGACTGGAATCTGAGA 58.450 50.000 0.00 0.00 0.00 3.27
5550 9385 6.093633 GGATTTTAGTTAACGCTGACTGGAAT 59.906 38.462 0.00 0.00 0.00 3.01
5553 9388 4.935808 AGGATTTTAGTTAACGCTGACTGG 59.064 41.667 0.00 0.00 0.00 4.00
5555 9390 5.548406 ACAGGATTTTAGTTAACGCTGACT 58.452 37.500 0.00 0.00 0.00 3.41
5558 9393 4.693566 TGGACAGGATTTTAGTTAACGCTG 59.306 41.667 0.00 0.00 0.00 5.18
5573 9408 2.775384 ACACCAGTAAAGTTGGACAGGA 59.225 45.455 6.61 0.00 39.08 3.86
5590 9432 0.667792 GAGAGACGTGAGCCAACACC 60.668 60.000 0.00 0.00 37.48 4.16
5642 9499 0.879400 CGCTGGATCAGAGACCATGC 60.879 60.000 0.00 0.00 33.20 4.06
5649 9506 1.649664 CTTCAACCGCTGGATCAGAG 58.350 55.000 0.00 0.00 32.44 3.35
5661 9518 2.354259 CTGTGATGGAGAGCTTCAACC 58.646 52.381 0.00 0.00 0.00 3.77
5671 9528 4.763793 CCTATTAATTGGGCTGTGATGGAG 59.236 45.833 7.95 0.00 0.00 3.86
5679 9540 2.447047 AGGGGTCCTATTAATTGGGCTG 59.553 50.000 18.08 0.00 28.47 4.85
5693 9554 1.553704 ACATGAAACGTCTAGGGGTCC 59.446 52.381 0.00 0.00 0.00 4.46
5697 9561 5.643777 AGATTTTCACATGAAACGTCTAGGG 59.356 40.000 14.97 0.00 43.01 3.53
5701 9565 6.481976 TGTACAGATTTTCACATGAAACGTCT 59.518 34.615 6.55 10.12 43.01 4.18
5714 9578 5.067805 GGGGGATCAACATGTACAGATTTTC 59.932 44.000 0.00 0.00 0.00 2.29
5720 9584 3.016736 GTTGGGGGATCAACATGTACAG 58.983 50.000 0.00 0.00 44.51 2.74
5723 9587 1.909986 TCGTTGGGGGATCAACATGTA 59.090 47.619 0.00 0.00 45.16 2.29
5726 9590 2.595750 TTTCGTTGGGGGATCAACAT 57.404 45.000 8.19 0.00 45.16 2.71
5728 9592 1.749063 GGATTTCGTTGGGGGATCAAC 59.251 52.381 0.00 0.00 42.43 3.18
5729 9593 1.356059 TGGATTTCGTTGGGGGATCAA 59.644 47.619 0.00 0.00 0.00 2.57
5730 9594 0.995803 TGGATTTCGTTGGGGGATCA 59.004 50.000 0.00 0.00 0.00 2.92
5731 9595 1.680338 CTGGATTTCGTTGGGGGATC 58.320 55.000 0.00 0.00 0.00 3.36
5732 9596 0.258774 CCTGGATTTCGTTGGGGGAT 59.741 55.000 0.00 0.00 0.00 3.85
5733 9597 1.688811 CCTGGATTTCGTTGGGGGA 59.311 57.895 0.00 0.00 0.00 4.81
5734 9598 1.379843 CCCTGGATTTCGTTGGGGG 60.380 63.158 0.00 0.00 34.46 5.40
5735 9599 4.337013 CCCTGGATTTCGTTGGGG 57.663 61.111 0.00 0.00 34.46 4.96
5736 9600 2.052104 GCCCCTGGATTTCGTTGGG 61.052 63.158 0.00 0.00 37.68 4.12
5737 9601 2.052104 GGCCCCTGGATTTCGTTGG 61.052 63.158 0.00 0.00 0.00 3.77
5738 9602 2.406616 CGGCCCCTGGATTTCGTTG 61.407 63.158 0.00 0.00 0.00 4.10
5739 9603 2.045340 CGGCCCCTGGATTTCGTT 60.045 61.111 0.00 0.00 0.00 3.85
5740 9604 4.109675 CCGGCCCCTGGATTTCGT 62.110 66.667 0.00 0.00 0.00 3.85
5741 9605 2.260088 TTACCGGCCCCTGGATTTCG 62.260 60.000 0.00 0.00 0.00 3.46
5742 9606 0.185175 ATTACCGGCCCCTGGATTTC 59.815 55.000 0.00 0.00 0.00 2.17
5743 9607 1.144298 GTATTACCGGCCCCTGGATTT 59.856 52.381 0.00 0.00 0.00 2.17
5744 9608 0.769247 GTATTACCGGCCCCTGGATT 59.231 55.000 0.00 0.00 0.00 3.01
5745 9609 0.400815 TGTATTACCGGCCCCTGGAT 60.401 55.000 0.00 0.00 0.00 3.41
5746 9610 1.003182 TGTATTACCGGCCCCTGGA 59.997 57.895 0.00 0.00 0.00 3.86
5747 9611 1.147600 GTGTATTACCGGCCCCTGG 59.852 63.158 0.00 0.00 0.00 4.45
5748 9612 1.227438 CGTGTATTACCGGCCCCTG 60.227 63.158 0.00 0.00 0.00 4.45
5749 9613 3.097921 GCGTGTATTACCGGCCCCT 62.098 63.158 0.00 0.00 0.00 4.79
5750 9614 2.589724 GCGTGTATTACCGGCCCC 60.590 66.667 0.00 0.00 0.00 5.80
5751 9615 1.885850 CTGCGTGTATTACCGGCCC 60.886 63.158 0.00 0.00 0.00 5.80
5752 9616 2.531376 GCTGCGTGTATTACCGGCC 61.531 63.158 0.00 0.00 0.00 6.13
5753 9617 2.867091 CGCTGCGTGTATTACCGGC 61.867 63.158 14.93 3.89 0.00 6.13
5754 9618 2.235016 CCGCTGCGTGTATTACCGG 61.235 63.158 21.59 0.00 0.00 5.28
5755 9619 2.867091 GCCGCTGCGTGTATTACCG 61.867 63.158 21.59 3.00 0.00 4.02
5756 9620 2.531376 GGCCGCTGCGTGTATTACC 61.531 63.158 21.59 6.60 38.85 2.85
5757 9621 1.520787 AGGCCGCTGCGTGTATTAC 60.521 57.895 21.59 2.83 38.85 1.89
5758 9622 1.520564 CAGGCCGCTGCGTGTATTA 60.521 57.895 21.59 0.00 45.83 0.98
5759 9623 2.819595 CAGGCCGCTGCGTGTATT 60.820 61.111 21.59 0.00 45.83 1.89
5766 9630 4.166888 TCTGGATCAGGCCGCTGC 62.167 66.667 0.00 0.00 31.51 5.25
5767 9631 2.108566 CTCTGGATCAGGCCGCTG 59.891 66.667 0.00 0.00 31.51 5.18
5768 9632 3.859414 GCTCTGGATCAGGCCGCT 61.859 66.667 0.00 0.00 31.51 5.52
5769 9633 3.859414 AGCTCTGGATCAGGCCGC 61.859 66.667 0.00 0.00 31.40 6.53
5770 9634 2.108566 CAGCTCTGGATCAGGCCG 59.891 66.667 0.00 0.00 31.40 6.13
5780 9644 2.856222 AGGTGTTTTCTTCCAGCTCTG 58.144 47.619 0.00 0.00 34.51 3.35
5783 9647 3.584733 AAGAGGTGTTTTCTTCCAGCT 57.415 42.857 0.00 0.00 41.76 4.24
5784 9648 4.097892 TCAAAAGAGGTGTTTTCTTCCAGC 59.902 41.667 0.00 0.00 33.92 4.85
5785 9649 5.450550 GGTCAAAAGAGGTGTTTTCTTCCAG 60.451 44.000 0.00 0.00 33.92 3.86
5786 9650 4.401202 GGTCAAAAGAGGTGTTTTCTTCCA 59.599 41.667 0.00 0.00 33.92 3.53
5787 9651 4.202121 GGGTCAAAAGAGGTGTTTTCTTCC 60.202 45.833 0.00 0.00 33.92 3.46
5788 9652 4.401202 TGGGTCAAAAGAGGTGTTTTCTTC 59.599 41.667 0.00 0.00 33.92 2.87
5789 9653 4.349365 TGGGTCAAAAGAGGTGTTTTCTT 58.651 39.130 0.00 0.00 36.49 2.52
5790 9654 3.976015 TGGGTCAAAAGAGGTGTTTTCT 58.024 40.909 0.00 0.00 0.00 2.52
5791 9655 4.340950 TGATGGGTCAAAAGAGGTGTTTTC 59.659 41.667 0.00 0.00 0.00 2.29
5792 9656 4.099419 GTGATGGGTCAAAAGAGGTGTTTT 59.901 41.667 0.00 0.00 35.80 2.43
5793 9657 3.636764 GTGATGGGTCAAAAGAGGTGTTT 59.363 43.478 0.00 0.00 35.80 2.83
5794 9658 3.222603 GTGATGGGTCAAAAGAGGTGTT 58.777 45.455 0.00 0.00 35.80 3.32
5795 9659 2.174639 TGTGATGGGTCAAAAGAGGTGT 59.825 45.455 0.00 0.00 35.80 4.16
5796 9660 2.862541 TGTGATGGGTCAAAAGAGGTG 58.137 47.619 0.00 0.00 35.80 4.00
5797 9661 3.593442 TTGTGATGGGTCAAAAGAGGT 57.407 42.857 0.00 0.00 35.80 3.85
5801 9665 2.229784 GCTCCTTGTGATGGGTCAAAAG 59.770 50.000 2.11 2.11 45.49 2.27
5802 9666 2.238521 GCTCCTTGTGATGGGTCAAAA 58.761 47.619 0.00 0.00 35.80 2.44
5803 9667 1.144708 TGCTCCTTGTGATGGGTCAAA 59.855 47.619 0.00 0.00 35.80 2.69
5804 9668 0.770499 TGCTCCTTGTGATGGGTCAA 59.230 50.000 0.00 0.00 35.80 3.18
5805 9669 0.325933 CTGCTCCTTGTGATGGGTCA 59.674 55.000 0.00 0.00 0.00 4.02
5806 9670 0.615331 TCTGCTCCTTGTGATGGGTC 59.385 55.000 0.00 0.00 0.00 4.46
5807 9671 0.326264 GTCTGCTCCTTGTGATGGGT 59.674 55.000 0.00 0.00 0.00 4.51
5808 9672 0.325933 TGTCTGCTCCTTGTGATGGG 59.674 55.000 0.00 0.00 0.00 4.00
5809 9673 1.002888 ACTGTCTGCTCCTTGTGATGG 59.997 52.381 0.00 0.00 0.00 3.51
5810 9674 2.074576 CACTGTCTGCTCCTTGTGATG 58.925 52.381 0.00 0.00 0.00 3.07
5811 9675 2.469274 CACTGTCTGCTCCTTGTGAT 57.531 50.000 0.00 0.00 0.00 3.06
5812 9676 3.995526 CACTGTCTGCTCCTTGTGA 57.004 52.632 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.