Multiple sequence alignment - TraesCS4B01G099700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G099700 chr4B 100.000 2921 0 0 1 2921 105333753 105330833 0.000000e+00 5395.0
1 TraesCS4B01G099700 chr4B 86.820 478 58 3 1399 1874 414191197 414190723 1.990000e-146 529.0
2 TraesCS4B01G099700 chr4B 94.928 138 7 0 1 138 364006017 364005880 1.760000e-52 217.0
3 TraesCS4B01G099700 chr4B 93.103 145 8 2 1 144 366463811 366463668 8.200000e-51 211.0
4 TraesCS4B01G099700 chr4B 100.000 30 0 0 221 250 472403945 472403974 4.070000e-04 56.5
5 TraesCS4B01G099700 chr4D 92.028 2032 81 19 134 2138 71826315 71824338 0.000000e+00 2780.0
6 TraesCS4B01G099700 chr4D 85.913 504 68 1 1399 1902 336132515 336132015 4.280000e-148 534.0
7 TraesCS4B01G099700 chr4D 92.361 288 13 3 2442 2721 71824100 71823814 4.530000e-108 401.0
8 TraesCS4B01G099700 chr4D 84.071 226 36 0 1012 1237 336132943 336132718 4.900000e-53 219.0
9 TraesCS4B01G099700 chr4D 91.870 123 9 1 2189 2311 71824222 71824101 1.390000e-38 171.0
10 TraesCS4B01G099700 chr4A 93.775 1735 58 21 417 2138 527114163 527112466 0.000000e+00 2560.0
11 TraesCS4B01G099700 chr4A 88.926 298 23 4 2443 2732 527111841 527111546 2.770000e-95 359.0
12 TraesCS4B01G099700 chr4A 82.933 375 50 6 1486 1849 136919800 136920171 2.810000e-85 326.0
13 TraesCS4B01G099700 chr4A 86.307 241 20 8 2141 2370 527112080 527111842 1.740000e-62 250.0
14 TraesCS4B01G099700 chr4A 85.648 216 31 0 1013 1228 136917945 136918160 8.140000e-56 228.0
15 TraesCS4B01G099700 chr4A 93.478 138 9 0 271 408 527114843 527114706 3.820000e-49 206.0
16 TraesCS4B01G099700 chr4A 92.727 55 3 1 2730 2784 527099176 527099123 8.680000e-11 78.7
17 TraesCS4B01G099700 chr4A 94.444 36 2 0 222 257 484862275 484862310 4.070000e-04 56.5
18 TraesCS4B01G099700 chr3D 84.571 525 69 8 1434 1949 596989061 596989582 7.220000e-141 510.0
19 TraesCS4B01G099700 chr3D 88.554 166 19 0 997 1162 596981358 596981523 4.940000e-48 202.0
20 TraesCS4B01G099700 chr3D 100.000 30 0 0 221 250 573906808 573906837 4.070000e-04 56.5
21 TraesCS4B01G099700 chr3A 82.655 565 81 10 1399 1949 727174693 727175254 4.380000e-133 484.0
22 TraesCS4B01G099700 chr3A 100.000 32 0 0 221 252 645643100 645643069 3.140000e-05 60.2
23 TraesCS4B01G099700 chr5B 99.270 137 1 0 2785 2921 469359176 469359040 6.250000e-62 248.0
24 TraesCS4B01G099700 chr5B 96.970 132 4 0 1 132 598752097 598752228 3.790000e-54 222.0
25 TraesCS4B01G099700 chr5B 92.063 126 9 1 2782 2907 268725472 268725348 2.990000e-40 176.0
26 TraesCS4B01G099700 chr6B 95.683 139 3 3 2783 2921 631436837 631436702 1.360000e-53 220.0
27 TraesCS4B01G099700 chr6B 95.588 136 3 2 2784 2919 680296008 680296140 6.340000e-52 215.0
28 TraesCS4B01G099700 chr6B 93.431 137 6 3 2785 2921 697845655 697845522 1.780000e-47 200.0
29 TraesCS4B01G099700 chr2B 94.406 143 7 1 1 142 712367450 712367308 4.900000e-53 219.0
30 TraesCS4B01G099700 chr2B 95.556 135 6 0 1 135 792022062 792021928 1.760000e-52 217.0
31 TraesCS4B01G099700 chr2B 93.431 137 6 3 2785 2921 119187047 119187180 1.780000e-47 200.0
32 TraesCS4B01G099700 chr2B 91.971 137 6 3 2785 2921 631367871 631368002 1.380000e-43 187.0
33 TraesCS4B01G099700 chr2B 94.444 36 0 2 219 253 644530738 644530704 1.000000e-03 54.7
34 TraesCS4B01G099700 chr1A 95.556 135 6 0 1 135 280218152 280218286 1.760000e-52 217.0
35 TraesCS4B01G099700 chr1A 93.333 75 5 0 2367 2441 288508695 288508769 8.560000e-21 111.0
36 TraesCS4B01G099700 chr7A 94.891 137 7 0 1 137 309801416 309801280 6.340000e-52 215.0
37 TraesCS4B01G099700 chr7A 94.667 75 4 0 2367 2441 670549794 670549720 1.840000e-22 117.0
38 TraesCS4B01G099700 chr7A 94.595 74 4 0 2368 2441 672060845 672060918 6.610000e-22 115.0
39 TraesCS4B01G099700 chr5A 94.891 137 7 0 1 137 294867416 294867280 6.340000e-52 215.0
40 TraesCS4B01G099700 chr5A 91.935 124 9 1 2784 2907 544636510 544636388 3.870000e-39 172.0
41 TraesCS4B01G099700 chr5A 93.333 75 5 0 2367 2441 454733812 454733886 8.560000e-21 111.0
42 TraesCS4B01G099700 chr3B 94.853 136 7 0 1 136 546867815 546867680 2.280000e-51 213.0
43 TraesCS4B01G099700 chr5D 92.063 126 9 1 2782 2907 236222992 236223116 2.990000e-40 176.0
44 TraesCS4B01G099700 chr5D 93.243 74 5 0 2368 2441 424795915 424795988 3.080000e-20 110.0
45 TraesCS4B01G099700 chr6D 93.827 81 3 2 2367 2447 264687184 264687262 1.420000e-23 121.0
46 TraesCS4B01G099700 chr2A 94.595 74 4 0 2368 2441 745406853 745406926 6.610000e-22 115.0
47 TraesCS4B01G099700 chrUn 93.243 74 5 0 2368 2441 19198147 19198220 3.080000e-20 110.0
48 TraesCS4B01G099700 chr1D 93.243 74 5 0 2368 2441 464031273 464031200 3.080000e-20 110.0
49 TraesCS4B01G099700 chr7D 100.000 35 0 0 221 255 478366640 478366606 6.760000e-07 65.8
50 TraesCS4B01G099700 chr1B 100.000 35 0 0 221 255 556106666 556106632 6.760000e-07 65.8
51 TraesCS4B01G099700 chr2D 100.000 30 0 0 221 250 37382144 37382115 4.070000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G099700 chr4B 105330833 105333753 2920 True 5395.000000 5395 100.000000 1 2921 1 chr4B.!!$R1 2920
1 TraesCS4B01G099700 chr4D 71823814 71826315 2501 True 1117.333333 2780 92.086333 134 2721 3 chr4D.!!$R1 2587
2 TraesCS4B01G099700 chr4D 336132015 336132943 928 True 376.500000 534 84.992000 1012 1902 2 chr4D.!!$R2 890
3 TraesCS4B01G099700 chr4A 527111546 527114843 3297 True 843.750000 2560 90.621500 271 2732 4 chr4A.!!$R2 2461
4 TraesCS4B01G099700 chr4A 136917945 136920171 2226 False 277.000000 326 84.290500 1013 1849 2 chr4A.!!$F2 836
5 TraesCS4B01G099700 chr3D 596989061 596989582 521 False 510.000000 510 84.571000 1434 1949 1 chr3D.!!$F3 515
6 TraesCS4B01G099700 chr3A 727174693 727175254 561 False 484.000000 484 82.655000 1399 1949 1 chr3A.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 1423 0.03438 TCTCACTTCTCGGGTCGGAT 60.034 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2775 5258 0.032416 TAGGAGTTCCCGCTAAGCCT 60.032 55.0 0.0 0.0 40.87 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.908015 ACACACACGCCTTGTCCT 59.092 55.556 0.00 0.00 35.67 3.85
18 19 2.129620 ACACACACGCCTTGTCCTA 58.870 52.632 0.00 0.00 35.67 2.94
19 20 0.249741 ACACACACGCCTTGTCCTAC 60.250 55.000 0.00 0.00 35.67 3.18
20 21 0.249699 CACACACGCCTTGTCCTACA 60.250 55.000 0.00 0.00 35.67 2.74
21 22 0.685097 ACACACGCCTTGTCCTACAT 59.315 50.000 0.00 0.00 35.67 2.29
22 23 1.078709 CACACGCCTTGTCCTACATG 58.921 55.000 0.00 0.00 35.67 3.21
23 24 0.973632 ACACGCCTTGTCCTACATGA 59.026 50.000 0.00 0.00 29.79 3.07
24 25 1.337823 ACACGCCTTGTCCTACATGAC 60.338 52.381 0.00 0.00 29.79 3.06
25 26 0.973632 ACGCCTTGTCCTACATGACA 59.026 50.000 0.00 0.00 43.26 3.58
26 27 1.337823 ACGCCTTGTCCTACATGACAC 60.338 52.381 0.00 0.00 44.55 3.67
27 28 1.337728 CGCCTTGTCCTACATGACACA 60.338 52.381 0.00 0.00 44.55 3.72
28 29 2.350522 GCCTTGTCCTACATGACACAG 58.649 52.381 0.00 0.00 44.55 3.66
29 30 2.028112 GCCTTGTCCTACATGACACAGA 60.028 50.000 0.00 0.00 44.55 3.41
30 31 3.557054 GCCTTGTCCTACATGACACAGAA 60.557 47.826 0.00 0.00 44.55 3.02
31 32 4.641396 CCTTGTCCTACATGACACAGAAA 58.359 43.478 0.00 0.00 44.55 2.52
32 33 5.063204 CCTTGTCCTACATGACACAGAAAA 58.937 41.667 0.00 0.00 44.55 2.29
33 34 5.707298 CCTTGTCCTACATGACACAGAAAAT 59.293 40.000 0.00 0.00 44.55 1.82
34 35 6.128172 CCTTGTCCTACATGACACAGAAAATC 60.128 42.308 0.00 0.00 44.55 2.17
35 36 5.863965 TGTCCTACATGACACAGAAAATCA 58.136 37.500 0.00 0.00 40.22 2.57
36 37 5.934043 TGTCCTACATGACACAGAAAATCAG 59.066 40.000 0.00 0.00 40.22 2.90
37 38 4.937620 TCCTACATGACACAGAAAATCAGC 59.062 41.667 0.00 0.00 0.00 4.26
38 39 4.095483 CCTACATGACACAGAAAATCAGCC 59.905 45.833 0.00 0.00 0.00 4.85
39 40 3.489355 ACATGACACAGAAAATCAGCCA 58.511 40.909 0.00 0.00 0.00 4.75
40 41 3.504906 ACATGACACAGAAAATCAGCCAG 59.495 43.478 0.00 0.00 0.00 4.85
41 42 3.490439 TGACACAGAAAATCAGCCAGA 57.510 42.857 0.00 0.00 0.00 3.86
42 43 4.025040 TGACACAGAAAATCAGCCAGAT 57.975 40.909 0.00 0.00 39.09 2.90
44 45 4.216902 TGACACAGAAAATCAGCCAGATTG 59.783 41.667 3.05 0.00 46.09 2.67
45 46 4.147321 ACACAGAAAATCAGCCAGATTGT 58.853 39.130 3.05 0.00 46.09 2.71
46 47 4.022589 ACACAGAAAATCAGCCAGATTGTG 60.023 41.667 13.52 13.52 46.09 3.33
47 48 3.057033 ACAGAAAATCAGCCAGATTGTGC 60.057 43.478 3.05 0.00 46.09 4.57
48 49 2.494870 AGAAAATCAGCCAGATTGTGCC 59.505 45.455 3.05 0.00 46.09 5.01
49 50 1.927487 AAATCAGCCAGATTGTGCCA 58.073 45.000 3.05 0.00 46.09 4.92
50 51 1.927487 AATCAGCCAGATTGTGCCAA 58.073 45.000 1.52 0.00 45.11 4.52
51 52 1.927487 ATCAGCCAGATTGTGCCAAA 58.073 45.000 0.00 0.00 31.20 3.28
52 53 1.702182 TCAGCCAGATTGTGCCAAAA 58.298 45.000 0.00 0.00 0.00 2.44
53 54 2.250031 TCAGCCAGATTGTGCCAAAAT 58.750 42.857 0.00 0.00 0.00 1.82
54 55 2.633967 TCAGCCAGATTGTGCCAAAATT 59.366 40.909 0.00 0.00 0.00 1.82
55 56 2.997986 CAGCCAGATTGTGCCAAAATTC 59.002 45.455 0.00 0.00 0.00 2.17
56 57 1.994779 GCCAGATTGTGCCAAAATTCG 59.005 47.619 0.00 0.00 0.00 3.34
57 58 2.610232 GCCAGATTGTGCCAAAATTCGT 60.610 45.455 0.00 0.00 0.00 3.85
58 59 2.988493 CCAGATTGTGCCAAAATTCGTG 59.012 45.455 0.00 0.00 0.00 4.35
59 60 2.409378 CAGATTGTGCCAAAATTCGTGC 59.591 45.455 0.00 0.00 0.00 5.34
60 61 2.035704 AGATTGTGCCAAAATTCGTGCA 59.964 40.909 0.00 0.00 0.00 4.57
61 62 2.522836 TTGTGCCAAAATTCGTGCAT 57.477 40.000 0.00 0.00 35.96 3.96
62 63 3.650070 TTGTGCCAAAATTCGTGCATA 57.350 38.095 0.00 0.00 35.96 3.14
63 64 3.865011 TGTGCCAAAATTCGTGCATAT 57.135 38.095 0.00 0.00 35.96 1.78
64 65 4.972514 TGTGCCAAAATTCGTGCATATA 57.027 36.364 0.00 0.00 35.96 0.86
65 66 4.919206 TGTGCCAAAATTCGTGCATATAG 58.081 39.130 0.00 0.00 35.96 1.31
66 67 4.397730 TGTGCCAAAATTCGTGCATATAGT 59.602 37.500 0.00 0.00 35.96 2.12
67 68 5.586643 TGTGCCAAAATTCGTGCATATAGTA 59.413 36.000 0.00 0.00 35.96 1.82
68 69 5.907391 GTGCCAAAATTCGTGCATATAGTAC 59.093 40.000 0.00 0.00 35.96 2.73
69 70 5.820423 TGCCAAAATTCGTGCATATAGTACT 59.180 36.000 0.00 0.00 0.00 2.73
70 71 6.136071 GCCAAAATTCGTGCATATAGTACTG 58.864 40.000 5.39 0.00 0.00 2.74
71 72 6.658831 CCAAAATTCGTGCATATAGTACTGG 58.341 40.000 5.39 0.00 0.00 4.00
72 73 6.481976 CCAAAATTCGTGCATATAGTACTGGA 59.518 38.462 5.39 0.00 0.00 3.86
73 74 7.345192 CAAAATTCGTGCATATAGTACTGGAC 58.655 38.462 5.39 0.00 0.00 4.02
77 78 3.639538 GTGCATATAGTACTGGACGGTG 58.360 50.000 5.39 0.00 0.00 4.94
78 79 3.317149 GTGCATATAGTACTGGACGGTGA 59.683 47.826 5.39 0.00 0.00 4.02
79 80 4.022242 GTGCATATAGTACTGGACGGTGAT 60.022 45.833 5.39 0.00 0.00 3.06
80 81 4.022329 TGCATATAGTACTGGACGGTGATG 60.022 45.833 5.39 0.00 0.00 3.07
81 82 4.618460 GCATATAGTACTGGACGGTGATGG 60.618 50.000 5.39 0.00 0.00 3.51
82 83 2.812836 TAGTACTGGACGGTGATGGA 57.187 50.000 5.39 0.00 0.00 3.41
83 84 2.160721 AGTACTGGACGGTGATGGAT 57.839 50.000 0.00 0.00 0.00 3.41
84 85 1.757118 AGTACTGGACGGTGATGGATG 59.243 52.381 0.00 0.00 0.00 3.51
85 86 0.464036 TACTGGACGGTGATGGATGC 59.536 55.000 0.00 0.00 0.00 3.91
86 87 1.884464 CTGGACGGTGATGGATGCG 60.884 63.158 0.00 0.00 0.00 4.73
87 88 2.186903 GGACGGTGATGGATGCGT 59.813 61.111 0.00 0.00 0.00 5.24
88 89 2.173669 GGACGGTGATGGATGCGTG 61.174 63.158 0.00 0.00 0.00 5.34
89 90 1.447838 GACGGTGATGGATGCGTGT 60.448 57.895 0.00 0.00 0.00 4.49
90 91 1.695893 GACGGTGATGGATGCGTGTG 61.696 60.000 0.00 0.00 0.00 3.82
91 92 1.447663 CGGTGATGGATGCGTGTGA 60.448 57.895 0.00 0.00 0.00 3.58
92 93 0.811219 CGGTGATGGATGCGTGTGAT 60.811 55.000 0.00 0.00 0.00 3.06
93 94 0.940126 GGTGATGGATGCGTGTGATC 59.060 55.000 0.00 0.00 0.00 2.92
94 95 0.578683 GTGATGGATGCGTGTGATCG 59.421 55.000 0.00 0.00 0.00 3.69
95 96 0.459489 TGATGGATGCGTGTGATCGA 59.541 50.000 0.00 0.00 0.00 3.59
96 97 1.135046 GATGGATGCGTGTGATCGAG 58.865 55.000 0.00 0.00 0.00 4.04
97 98 0.746659 ATGGATGCGTGTGATCGAGA 59.253 50.000 0.00 0.00 0.00 4.04
98 99 0.746659 TGGATGCGTGTGATCGAGAT 59.253 50.000 0.00 0.00 0.00 2.75
99 100 1.135046 GGATGCGTGTGATCGAGATG 58.865 55.000 0.00 0.00 0.00 2.90
100 101 1.135046 GATGCGTGTGATCGAGATGG 58.865 55.000 0.00 0.00 0.00 3.51
101 102 0.461548 ATGCGTGTGATCGAGATGGT 59.538 50.000 0.00 0.00 0.00 3.55
102 103 0.179137 TGCGTGTGATCGAGATGGTC 60.179 55.000 0.00 0.00 0.00 4.02
103 104 0.179137 GCGTGTGATCGAGATGGTCA 60.179 55.000 0.00 0.00 0.00 4.02
104 105 1.735700 GCGTGTGATCGAGATGGTCAA 60.736 52.381 0.00 0.00 0.00 3.18
105 106 1.920574 CGTGTGATCGAGATGGTCAAC 59.079 52.381 0.00 0.00 0.00 3.18
106 107 2.671070 CGTGTGATCGAGATGGTCAACA 60.671 50.000 0.00 0.00 0.00 3.33
107 108 2.668457 GTGTGATCGAGATGGTCAACAC 59.332 50.000 0.00 0.00 0.00 3.32
108 109 2.271800 GTGATCGAGATGGTCAACACC 58.728 52.381 0.00 0.00 44.10 4.16
109 110 1.207089 TGATCGAGATGGTCAACACCC 59.793 52.381 0.00 0.00 42.99 4.61
110 111 1.207089 GATCGAGATGGTCAACACCCA 59.793 52.381 0.00 0.00 42.99 4.51
111 112 0.320374 TCGAGATGGTCAACACCCAC 59.680 55.000 0.00 0.00 42.99 4.61
112 113 0.034756 CGAGATGGTCAACACCCACA 59.965 55.000 0.00 0.00 42.99 4.17
113 114 1.523758 GAGATGGTCAACACCCACAC 58.476 55.000 0.00 0.00 42.99 3.82
114 115 0.250295 AGATGGTCAACACCCACACG 60.250 55.000 0.00 0.00 42.99 4.49
115 116 0.534203 GATGGTCAACACCCACACGT 60.534 55.000 0.00 0.00 42.99 4.49
116 117 0.817634 ATGGTCAACACCCACACGTG 60.818 55.000 15.48 15.48 42.99 4.49
118 119 1.711060 GGTCAACACCCACACGTGTG 61.711 60.000 36.13 36.13 46.19 3.82
126 127 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
127 128 2.240230 CACACGTGTGGGCGTTAAT 58.760 52.632 35.65 1.12 43.83 1.40
128 129 1.430479 CACACGTGTGGGCGTTAATA 58.570 50.000 35.65 0.00 43.83 0.98
129 130 2.004017 CACACGTGTGGGCGTTAATAT 58.996 47.619 35.65 0.33 43.83 1.28
130 131 2.417239 CACACGTGTGGGCGTTAATATT 59.583 45.455 35.65 0.00 43.83 1.28
131 132 3.075884 ACACGTGTGGGCGTTAATATTT 58.924 40.909 22.71 0.00 43.83 1.40
132 133 3.502979 ACACGTGTGGGCGTTAATATTTT 59.497 39.130 22.71 0.00 43.83 1.82
146 147 9.910511 GCGTTAATATTTTCGAAGTCTTAATCA 57.089 29.630 13.48 0.00 0.00 2.57
158 159 6.089551 CGAAGTCTTAATCAATGCTATACCCG 59.910 42.308 0.00 0.00 0.00 5.28
162 163 6.366332 GTCTTAATCAATGCTATACCCGTGAG 59.634 42.308 0.00 0.00 0.00 3.51
164 165 5.489792 AATCAATGCTATACCCGTGAGAT 57.510 39.130 0.00 0.00 0.00 2.75
166 167 3.057526 TCAATGCTATACCCGTGAGATCG 60.058 47.826 0.00 0.00 0.00 3.69
173 174 1.758936 ACCCGTGAGATCGTACATGA 58.241 50.000 0.00 0.00 0.00 3.07
180 181 6.206498 CCGTGAGATCGTACATGAAGATTTA 58.794 40.000 0.00 0.00 0.00 1.40
183 184 8.841822 CGTGAGATCGTACATGAAGATTTATAC 58.158 37.037 0.00 0.05 0.00 1.47
233 235 3.157881 TCACCTTGAAGTCTCAGTCGAT 58.842 45.455 0.00 0.00 31.69 3.59
248 250 6.699204 TCTCAGTCGATTGAGATTTAGCAATC 59.301 38.462 30.21 0.00 46.42 2.67
317 319 2.202878 GCCGCTGCAACGATCCTA 60.203 61.111 11.83 0.00 37.47 2.94
328 330 0.178970 ACGATCCTACCGGTAGCCAT 60.179 55.000 32.43 25.27 31.95 4.40
432 976 7.229907 GGGTGGAACATACTAGAAAAGACAAAA 59.770 37.037 0.00 0.00 44.52 2.44
444 988 4.918810 AAAGACAAAAGGTGTGATGTCC 57.081 40.909 0.00 0.00 41.96 4.02
578 1133 7.069578 AGAGTCAATAATGGTAACTCCGTATGT 59.930 37.037 0.00 0.00 37.63 2.29
579 1134 8.241497 AGTCAATAATGGTAACTCCGTATGTA 57.759 34.615 0.00 0.00 39.52 2.29
580 1135 8.358148 AGTCAATAATGGTAACTCCGTATGTAG 58.642 37.037 0.00 0.00 39.52 2.74
581 1136 8.355169 GTCAATAATGGTAACTCCGTATGTAGA 58.645 37.037 0.00 0.00 39.52 2.59
582 1137 8.573885 TCAATAATGGTAACTCCGTATGTAGAG 58.426 37.037 0.00 0.00 39.52 2.43
583 1138 8.573885 CAATAATGGTAACTCCGTATGTAGAGA 58.426 37.037 0.00 0.00 39.52 3.10
599 1154 3.140325 AGAGATAGAGCGAGGAAGGAG 57.860 52.381 0.00 0.00 0.00 3.69
615 1170 0.536460 GGAGGGCTTTGAAACCGTCA 60.536 55.000 15.63 0.00 41.56 4.35
679 1234 0.039618 ACAAATCCGTTGGGCTCCAT 59.960 50.000 0.00 0.00 41.97 3.41
709 1270 0.249322 CGATCCACGTCCCACATACC 60.249 60.000 0.00 0.00 37.22 2.73
735 1296 2.032377 CGTCAAACATGTACACCACCAC 60.032 50.000 0.00 0.00 0.00 4.16
736 1297 2.032377 GTCAAACATGTACACCACCACG 60.032 50.000 0.00 0.00 0.00 4.94
737 1298 1.944024 CAAACATGTACACCACCACGT 59.056 47.619 0.00 0.00 0.00 4.49
738 1299 3.132160 CAAACATGTACACCACCACGTA 58.868 45.455 0.00 0.00 0.00 3.57
799 1360 0.871722 CGGTCAAACGGCTTGATTCA 59.128 50.000 5.62 0.00 45.74 2.57
854 1419 0.108567 GGCTTCTCACTTCTCGGGTC 60.109 60.000 0.00 0.00 0.00 4.46
855 1420 0.456995 GCTTCTCACTTCTCGGGTCG 60.457 60.000 0.00 0.00 0.00 4.79
856 1421 0.171455 CTTCTCACTTCTCGGGTCGG 59.829 60.000 0.00 0.00 0.00 4.79
857 1422 0.251033 TTCTCACTTCTCGGGTCGGA 60.251 55.000 0.00 0.00 0.00 4.55
858 1423 0.034380 TCTCACTTCTCGGGTCGGAT 60.034 55.000 0.00 0.00 0.00 4.18
962 1528 0.386476 ACACCTACACGCACGAAAGA 59.614 50.000 0.00 0.00 0.00 2.52
995 1561 1.135867 GATCGATCGAAGAGGCTTGC 58.864 55.000 23.50 0.00 43.63 4.01
1255 1848 7.329471 CCATGGTACGTACTGATCTCATTTATG 59.671 40.741 24.07 8.26 0.00 1.90
1273 1866 1.298602 TGCTACTAACGGCATGCATG 58.701 50.000 22.70 22.70 33.23 4.06
1815 3870 0.596577 CCGACCTCTTCTTCGTGACA 59.403 55.000 0.00 0.00 33.23 3.58
1968 4037 7.251704 TGCAGTTACTACGTATTACTCCTAC 57.748 40.000 0.00 0.00 0.00 3.18
2063 4136 2.228925 TGCATGCAGCTACAAAACTGA 58.771 42.857 18.46 0.00 45.94 3.41
2064 4137 2.227149 TGCATGCAGCTACAAAACTGAG 59.773 45.455 18.46 0.00 45.94 3.35
2065 4138 2.227388 GCATGCAGCTACAAAACTGAGT 59.773 45.455 14.21 0.00 41.15 3.41
2066 4139 3.818387 CATGCAGCTACAAAACTGAGTG 58.182 45.455 0.00 0.00 35.90 3.51
2067 4140 2.917933 TGCAGCTACAAAACTGAGTGT 58.082 42.857 0.00 0.00 35.90 3.55
2068 4141 4.066646 TGCAGCTACAAAACTGAGTGTA 57.933 40.909 0.00 0.00 35.90 2.90
2069 4142 4.058124 TGCAGCTACAAAACTGAGTGTAG 58.942 43.478 6.49 6.49 46.60 2.74
2070 4143 4.058817 GCAGCTACAAAACTGAGTGTAGT 58.941 43.478 11.34 1.19 45.92 2.73
2071 4144 5.221362 TGCAGCTACAAAACTGAGTGTAGTA 60.221 40.000 11.34 2.15 45.92 1.82
2072 4145 5.869888 GCAGCTACAAAACTGAGTGTAGTAT 59.130 40.000 11.34 0.52 45.92 2.12
2075 4148 8.244802 CAGCTACAAAACTGAGTGTAGTATAGT 58.755 37.037 11.34 0.00 45.92 2.12
2079 4152 8.350852 ACAAAACTGAGTGTAGTATAGTAGCT 57.649 34.615 0.00 0.00 0.00 3.32
2097 4170 2.492088 AGCTAGTGAGATGTGCGTGTTA 59.508 45.455 0.00 0.00 0.00 2.41
2098 4171 3.131223 AGCTAGTGAGATGTGCGTGTTAT 59.869 43.478 0.00 0.00 0.00 1.89
2138 4211 1.810151 GCCGGTCAAACTATTTGCTCA 59.190 47.619 1.90 0.00 40.43 4.26
2139 4212 2.159517 GCCGGTCAAACTATTTGCTCAG 60.160 50.000 1.90 0.00 40.43 3.35
2141 4214 3.502211 CCGGTCAAACTATTTGCTCAGTT 59.498 43.478 0.00 0.00 40.43 3.16
2232 4707 6.713762 TCTGTTTGAATTGAATTGGTCTGT 57.286 33.333 0.00 0.00 0.00 3.41
2236 4711 6.127225 TGTTTGAATTGAATTGGTCTGTGGAA 60.127 34.615 0.00 0.00 0.00 3.53
2288 4763 5.751990 GCAAAGGGAAATCTGCTTATGATTG 59.248 40.000 0.00 0.00 34.74 2.67
2296 4771 9.245962 GGAAATCTGCTTATGATTGAATTTCTG 57.754 33.333 0.00 0.00 34.74 3.02
2327 4802 2.104622 TGACAGTTGGAGTTGCTCATGA 59.895 45.455 0.00 0.00 31.08 3.07
2334 4809 5.479375 AGTTGGAGTTGCTCATGAAATCAAT 59.521 36.000 0.00 0.00 31.08 2.57
2341 4816 7.439381 AGTTGCTCATGAAATCAATCAACTTT 58.561 30.769 0.00 0.00 39.58 2.66
2342 4817 7.597743 AGTTGCTCATGAAATCAATCAACTTTC 59.402 33.333 0.00 0.00 39.58 2.62
2347 4822 8.991243 TCATGAAATCAATCAACTTTCCATTC 57.009 30.769 0.00 0.00 32.06 2.67
2362 4837 6.098124 ACTTTCCATTCCAGATTGTTGTTTGA 59.902 34.615 0.00 0.00 0.00 2.69
2372 4847 9.906660 TCCAGATTGTTGTTTGAATATGTAAAC 57.093 29.630 7.70 7.70 37.32 2.01
2373 4848 9.912634 CCAGATTGTTGTTTGAATATGTAAACT 57.087 29.630 13.21 0.00 37.60 2.66
2437 4912 8.658499 ACGCTTTTATATTAGTTTACAGAGGG 57.342 34.615 0.00 0.00 0.00 4.30
2438 4913 8.480501 ACGCTTTTATATTAGTTTACAGAGGGA 58.519 33.333 0.00 0.00 0.00 4.20
2439 4914 8.979574 CGCTTTTATATTAGTTTACAGAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
2440 4915 9.833917 GCTTTTATATTAGTTTACAGAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
2457 4932 3.816523 GGGAGTTCGTTGTTGGTTGATTA 59.183 43.478 0.00 0.00 0.00 1.75
2498 4980 5.013568 TGAGTGAACACGAGTCCTTTTAA 57.986 39.130 0.00 0.00 36.20 1.52
2536 5018 6.093219 GAGAATACTCAGTTGATGCACAACAT 59.907 38.462 24.33 12.30 46.79 2.71
2573 5055 2.563179 GAGAGAACACTCCAGTTGGCTA 59.437 50.000 0.00 0.00 34.44 3.93
2604 5086 3.275143 TCGTTTTTGTTCCAGCTTCTGA 58.725 40.909 0.00 0.00 32.44 3.27
2611 5093 6.907206 TTTGTTCCAGCTTCTGAAAAATTG 57.093 33.333 0.00 0.00 32.44 2.32
2666 5148 4.992511 GGGCCGTTACGCACCACA 62.993 66.667 15.01 0.00 0.00 4.17
2667 5149 2.744709 GGCCGTTACGCACCACAT 60.745 61.111 9.61 0.00 0.00 3.21
2669 5151 1.133869 GCCGTTACGCACCACATTC 59.866 57.895 0.00 0.00 0.00 2.67
2690 5173 1.531149 CGACACGCTTGATTCAAACCT 59.469 47.619 0.00 0.00 0.00 3.50
2714 5197 6.186957 TGTTAGCCCATAAAGACACATTGAT 58.813 36.000 0.00 0.00 0.00 2.57
2723 5206 4.365514 AAGACACATTGATACACACCCA 57.634 40.909 0.00 0.00 0.00 4.51
2732 5215 0.480690 ATACACACCCACAAAGCCCA 59.519 50.000 0.00 0.00 0.00 5.36
2733 5216 0.466555 TACACACCCACAAAGCCCAC 60.467 55.000 0.00 0.00 0.00 4.61
2734 5217 2.123468 ACACCCACAAAGCCCACC 60.123 61.111 0.00 0.00 0.00 4.61
2735 5218 3.294493 CACCCACAAAGCCCACCG 61.294 66.667 0.00 0.00 0.00 4.94
2750 5233 4.794648 CCGCGCCTCCCCAATCAA 62.795 66.667 0.00 0.00 0.00 2.57
2751 5234 2.749839 CGCGCCTCCCCAATCAAA 60.750 61.111 0.00 0.00 0.00 2.69
2752 5235 2.885113 GCGCCTCCCCAATCAAAC 59.115 61.111 0.00 0.00 0.00 2.93
2753 5236 1.976474 GCGCCTCCCCAATCAAACA 60.976 57.895 0.00 0.00 0.00 2.83
2754 5237 1.883021 CGCCTCCCCAATCAAACAC 59.117 57.895 0.00 0.00 0.00 3.32
2755 5238 0.893270 CGCCTCCCCAATCAAACACA 60.893 55.000 0.00 0.00 0.00 3.72
2756 5239 1.337118 GCCTCCCCAATCAAACACAA 58.663 50.000 0.00 0.00 0.00 3.33
2757 5240 1.901833 GCCTCCCCAATCAAACACAAT 59.098 47.619 0.00 0.00 0.00 2.71
2758 5241 2.354003 GCCTCCCCAATCAAACACAATG 60.354 50.000 0.00 0.00 0.00 2.82
2759 5242 3.164268 CCTCCCCAATCAAACACAATGA 58.836 45.455 0.00 0.00 0.00 2.57
2760 5243 3.770933 CCTCCCCAATCAAACACAATGAT 59.229 43.478 0.00 0.00 39.15 2.45
2761 5244 4.142093 CCTCCCCAATCAAACACAATGATC 60.142 45.833 0.00 0.00 36.53 2.92
2762 5245 3.768757 TCCCCAATCAAACACAATGATCC 59.231 43.478 0.00 0.00 36.53 3.36
2763 5246 3.514706 CCCCAATCAAACACAATGATCCA 59.485 43.478 0.00 0.00 36.53 3.41
2764 5247 4.162698 CCCCAATCAAACACAATGATCCAT 59.837 41.667 0.00 0.00 36.53 3.41
2765 5248 5.338544 CCCCAATCAAACACAATGATCCATT 60.339 40.000 0.00 0.00 36.53 3.16
2766 5249 5.813672 CCCAATCAAACACAATGATCCATTC 59.186 40.000 0.00 0.00 36.53 2.67
2767 5250 6.399743 CCAATCAAACACAATGATCCATTCA 58.600 36.000 0.00 0.00 36.53 2.57
2769 5252 7.011016 CCAATCAAACACAATGATCCATTCATG 59.989 37.037 0.00 0.00 44.51 3.07
2770 5253 6.593268 TCAAACACAATGATCCATTCATGT 57.407 33.333 0.00 0.00 44.51 3.21
2771 5254 6.623486 TCAAACACAATGATCCATTCATGTC 58.377 36.000 0.00 0.00 44.51 3.06
2772 5255 6.208994 TCAAACACAATGATCCATTCATGTCA 59.791 34.615 0.00 0.00 44.51 3.58
2773 5256 5.571784 ACACAATGATCCATTCATGTCAC 57.428 39.130 0.00 0.00 44.51 3.67
2774 5257 4.400251 ACACAATGATCCATTCATGTCACC 59.600 41.667 0.00 0.00 44.51 4.02
2775 5258 4.399934 CACAATGATCCATTCATGTCACCA 59.600 41.667 0.00 0.00 44.51 4.17
2776 5259 4.643334 ACAATGATCCATTCATGTCACCAG 59.357 41.667 0.00 0.00 44.51 4.00
2777 5260 3.286329 TGATCCATTCATGTCACCAGG 57.714 47.619 0.00 0.00 0.00 4.45
2778 5261 1.952296 GATCCATTCATGTCACCAGGC 59.048 52.381 0.00 0.00 0.00 4.85
2779 5262 0.994247 TCCATTCATGTCACCAGGCT 59.006 50.000 0.00 0.00 0.00 4.58
2780 5263 1.355381 TCCATTCATGTCACCAGGCTT 59.645 47.619 0.00 0.00 0.00 4.35
2781 5264 2.575735 TCCATTCATGTCACCAGGCTTA 59.424 45.455 0.00 0.00 0.00 3.09
2782 5265 2.947652 CCATTCATGTCACCAGGCTTAG 59.052 50.000 0.00 0.00 0.00 2.18
2783 5266 2.113860 TTCATGTCACCAGGCTTAGC 57.886 50.000 0.00 0.00 0.00 3.09
2784 5267 0.108186 TCATGTCACCAGGCTTAGCG 60.108 55.000 0.00 0.00 0.00 4.26
2785 5268 1.091771 CATGTCACCAGGCTTAGCGG 61.092 60.000 0.00 0.00 0.00 5.52
2786 5269 2.125106 GTCACCAGGCTTAGCGGG 60.125 66.667 11.21 11.21 0.00 6.13
2787 5270 2.284331 TCACCAGGCTTAGCGGGA 60.284 61.111 18.19 0.00 0.00 5.14
2788 5271 1.916273 TCACCAGGCTTAGCGGGAA 60.916 57.895 18.19 5.27 0.00 3.97
2789 5272 1.745489 CACCAGGCTTAGCGGGAAC 60.745 63.158 18.19 0.00 0.00 3.62
2790 5273 1.918800 ACCAGGCTTAGCGGGAACT 60.919 57.895 18.19 0.00 0.00 3.01
2791 5274 1.153349 CCAGGCTTAGCGGGAACTC 60.153 63.158 7.64 0.00 0.00 3.01
2792 5275 1.153349 CAGGCTTAGCGGGAACTCC 60.153 63.158 0.00 0.00 0.00 3.85
2793 5276 1.306226 AGGCTTAGCGGGAACTCCT 60.306 57.895 0.00 0.00 35.95 3.69
2794 5277 0.032416 AGGCTTAGCGGGAACTCCTA 60.032 55.000 0.00 0.00 35.95 2.94
2795 5278 1.049402 GGCTTAGCGGGAACTCCTAT 58.951 55.000 0.00 0.00 35.95 2.57
2796 5279 1.416772 GGCTTAGCGGGAACTCCTATT 59.583 52.381 0.00 0.00 35.95 1.73
2797 5280 2.484889 GCTTAGCGGGAACTCCTATTG 58.515 52.381 0.00 0.00 35.95 1.90
2798 5281 2.807108 GCTTAGCGGGAACTCCTATTGG 60.807 54.545 0.00 0.00 35.95 3.16
2799 5282 2.464796 TAGCGGGAACTCCTATTGGA 57.535 50.000 0.00 0.00 40.69 3.53
2800 5283 0.831307 AGCGGGAACTCCTATTGGAC 59.169 55.000 0.00 0.00 37.46 4.02
2801 5284 0.529992 GCGGGAACTCCTATTGGACG 60.530 60.000 0.00 0.00 37.46 4.79
2802 5285 0.529992 CGGGAACTCCTATTGGACGC 60.530 60.000 0.00 0.00 37.46 5.19
2803 5286 0.529992 GGGAACTCCTATTGGACGCG 60.530 60.000 3.53 3.53 37.46 6.01
2804 5287 0.175073 GGAACTCCTATTGGACGCGT 59.825 55.000 13.85 13.85 37.46 6.01
2805 5288 1.405121 GGAACTCCTATTGGACGCGTT 60.405 52.381 15.53 0.00 37.46 4.84
2806 5289 1.925185 GAACTCCTATTGGACGCGTTC 59.075 52.381 15.53 13.50 37.66 3.95
2807 5290 1.183549 ACTCCTATTGGACGCGTTCT 58.816 50.000 20.15 1.08 37.46 3.01
2808 5291 1.135083 ACTCCTATTGGACGCGTTCTG 60.135 52.381 20.15 6.28 37.46 3.02
2809 5292 0.459585 TCCTATTGGACGCGTTCTGC 60.460 55.000 20.15 2.64 37.46 4.26
2819 5302 3.454941 GCGTTCTGCGTCAAAATGT 57.545 47.368 0.00 0.00 43.66 2.71
2820 5303 1.318251 GCGTTCTGCGTCAAAATGTC 58.682 50.000 0.00 0.00 43.66 3.06
2821 5304 1.580439 CGTTCTGCGTCAAAATGTCG 58.420 50.000 0.00 0.00 35.54 4.35
2822 5305 1.070843 CGTTCTGCGTCAAAATGTCGT 60.071 47.619 0.00 0.00 31.86 4.34
2823 5306 2.560896 GTTCTGCGTCAAAATGTCGTC 58.439 47.619 0.00 0.00 31.86 4.20
2824 5307 0.781787 TCTGCGTCAAAATGTCGTCG 59.218 50.000 0.00 0.00 31.86 5.12
2825 5308 0.785708 CTGCGTCAAAATGTCGTCGC 60.786 55.000 0.00 0.00 43.14 5.19
2826 5309 1.509162 GCGTCAAAATGTCGTCGCC 60.509 57.895 0.00 0.00 38.16 5.54
2827 5310 1.856688 CGTCAAAATGTCGTCGCCA 59.143 52.632 0.00 0.00 0.00 5.69
2828 5311 0.450482 CGTCAAAATGTCGTCGCCAC 60.450 55.000 0.00 0.00 0.00 5.01
2830 5313 1.792057 CAAAATGTCGTCGCCACGC 60.792 57.895 0.00 0.00 46.28 5.34
2831 5314 2.248135 AAAATGTCGTCGCCACGCA 61.248 52.632 0.00 1.01 46.28 5.24
2832 5315 2.438385 AAAATGTCGTCGCCACGCAC 62.438 55.000 0.00 0.00 46.28 5.34
2833 5316 4.656117 ATGTCGTCGCCACGCACA 62.656 61.111 0.00 5.36 46.28 4.57
2875 5358 4.508128 CCATCGCGCTGTACCGGT 62.508 66.667 13.98 13.98 0.00 5.28
2876 5359 3.254654 CATCGCGCTGTACCGGTG 61.255 66.667 19.93 0.56 0.00 4.94
2877 5360 4.508128 ATCGCGCTGTACCGGTGG 62.508 66.667 19.93 8.56 0.00 4.61
2879 5362 4.728102 CGCGCTGTACCGGTGGAA 62.728 66.667 19.93 0.81 0.00 3.53
2880 5363 2.357760 GCGCTGTACCGGTGGAAA 60.358 61.111 19.93 0.00 0.00 3.13
2881 5364 2.388232 GCGCTGTACCGGTGGAAAG 61.388 63.158 19.93 10.22 0.00 2.62
2882 5365 1.290955 CGCTGTACCGGTGGAAAGA 59.709 57.895 19.93 0.00 0.00 2.52
2883 5366 0.320073 CGCTGTACCGGTGGAAAGAA 60.320 55.000 19.93 0.00 0.00 2.52
2884 5367 1.874739 CGCTGTACCGGTGGAAAGAAA 60.875 52.381 19.93 0.00 0.00 2.52
2885 5368 2.223745 GCTGTACCGGTGGAAAGAAAA 58.776 47.619 19.93 0.00 0.00 2.29
2886 5369 2.225727 GCTGTACCGGTGGAAAGAAAAG 59.774 50.000 19.93 0.00 0.00 2.27
2887 5370 2.812011 CTGTACCGGTGGAAAGAAAAGG 59.188 50.000 19.93 0.00 0.00 3.11
2888 5371 2.438763 TGTACCGGTGGAAAGAAAAGGA 59.561 45.455 19.93 0.00 0.00 3.36
2889 5372 2.740506 ACCGGTGGAAAGAAAAGGAA 57.259 45.000 6.12 0.00 0.00 3.36
2890 5373 2.583143 ACCGGTGGAAAGAAAAGGAAG 58.417 47.619 6.12 0.00 0.00 3.46
2891 5374 1.269723 CCGGTGGAAAGAAAAGGAAGC 59.730 52.381 0.00 0.00 0.00 3.86
2892 5375 1.953686 CGGTGGAAAGAAAAGGAAGCA 59.046 47.619 0.00 0.00 0.00 3.91
2893 5376 2.360801 CGGTGGAAAGAAAAGGAAGCAA 59.639 45.455 0.00 0.00 0.00 3.91
2894 5377 3.181480 CGGTGGAAAGAAAAGGAAGCAAA 60.181 43.478 0.00 0.00 0.00 3.68
2895 5378 4.679372 CGGTGGAAAGAAAAGGAAGCAAAA 60.679 41.667 0.00 0.00 0.00 2.44
2896 5379 5.182487 GGTGGAAAGAAAAGGAAGCAAAAA 58.818 37.500 0.00 0.00 0.00 1.94
2912 5395 3.457560 AAAAAGGGGAAGGTGAGGC 57.542 52.632 0.00 0.00 0.00 4.70
2913 5396 0.539669 AAAAAGGGGAAGGTGAGGCG 60.540 55.000 0.00 0.00 0.00 5.52
2914 5397 3.569200 AAAGGGGAAGGTGAGGCGC 62.569 63.158 0.00 0.00 0.00 6.53
2918 5401 4.021925 GGAAGGTGAGGCGCCACT 62.022 66.667 31.54 17.95 36.32 4.00
2919 5402 2.435059 GAAGGTGAGGCGCCACTC 60.435 66.667 31.54 23.17 36.32 3.51
2920 5403 4.379243 AAGGTGAGGCGCCACTCG 62.379 66.667 31.54 0.00 40.39 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249741 GTAGGACAAGGCGTGTGTGT 60.250 55.000 11.66 0.00 41.96 3.72
1 2 0.249699 TGTAGGACAAGGCGTGTGTG 60.250 55.000 11.66 0.00 41.96 3.82
2 3 0.685097 ATGTAGGACAAGGCGTGTGT 59.315 50.000 11.66 0.33 41.96 3.72
3 4 1.078709 CATGTAGGACAAGGCGTGTG 58.921 55.000 11.66 0.00 41.96 3.82
4 5 0.973632 TCATGTAGGACAAGGCGTGT 59.026 50.000 5.57 5.57 45.74 4.49
5 6 1.337728 TGTCATGTAGGACAAGGCGTG 60.338 52.381 0.00 0.00 44.34 5.34
6 7 0.973632 TGTCATGTAGGACAAGGCGT 59.026 50.000 0.00 0.00 44.34 5.68
7 8 3.832704 TGTCATGTAGGACAAGGCG 57.167 52.632 0.00 0.00 44.34 5.52
12 13 5.863965 TGATTTTCTGTGTCATGTAGGACA 58.136 37.500 0.00 0.00 45.06 4.02
13 14 5.163814 GCTGATTTTCTGTGTCATGTAGGAC 60.164 44.000 0.00 0.00 38.29 3.85
14 15 4.937620 GCTGATTTTCTGTGTCATGTAGGA 59.062 41.667 0.00 0.00 0.00 2.94
15 16 4.095483 GGCTGATTTTCTGTGTCATGTAGG 59.905 45.833 0.00 0.00 0.00 3.18
16 17 4.696877 TGGCTGATTTTCTGTGTCATGTAG 59.303 41.667 0.00 0.00 0.00 2.74
17 18 4.650734 TGGCTGATTTTCTGTGTCATGTA 58.349 39.130 0.00 0.00 0.00 2.29
18 19 3.489355 TGGCTGATTTTCTGTGTCATGT 58.511 40.909 0.00 0.00 0.00 3.21
19 20 3.754850 TCTGGCTGATTTTCTGTGTCATG 59.245 43.478 0.00 0.00 0.00 3.07
20 21 4.025040 TCTGGCTGATTTTCTGTGTCAT 57.975 40.909 0.00 0.00 0.00 3.06
21 22 3.490439 TCTGGCTGATTTTCTGTGTCA 57.510 42.857 0.00 0.00 0.00 3.58
22 23 4.217118 ACAATCTGGCTGATTTTCTGTGTC 59.783 41.667 15.90 0.00 43.00 3.67
23 24 4.022589 CACAATCTGGCTGATTTTCTGTGT 60.023 41.667 20.13 12.38 43.00 3.72
24 25 4.482386 CACAATCTGGCTGATTTTCTGTG 58.518 43.478 15.90 16.56 43.00 3.66
25 26 3.057033 GCACAATCTGGCTGATTTTCTGT 60.057 43.478 15.90 9.67 43.00 3.41
26 27 3.508762 GCACAATCTGGCTGATTTTCTG 58.491 45.455 15.90 12.32 43.00 3.02
27 28 2.494870 GGCACAATCTGGCTGATTTTCT 59.505 45.455 15.90 0.84 43.00 2.52
28 29 2.231964 TGGCACAATCTGGCTGATTTTC 59.768 45.455 15.90 8.58 45.96 2.29
29 30 2.250031 TGGCACAATCTGGCTGATTTT 58.750 42.857 15.90 8.25 45.96 1.82
30 31 1.927487 TGGCACAATCTGGCTGATTT 58.073 45.000 15.90 6.46 45.96 2.17
31 32 3.675995 TGGCACAATCTGGCTGATT 57.324 47.368 13.17 13.17 45.96 2.57
43 44 3.865011 ATATGCACGAATTTTGGCACA 57.135 38.095 0.00 0.00 39.34 4.57
44 45 4.920376 ACTATATGCACGAATTTTGGCAC 58.080 39.130 0.00 0.00 39.34 5.01
45 46 5.820423 AGTACTATATGCACGAATTTTGGCA 59.180 36.000 0.00 0.00 41.00 4.92
46 47 6.136071 CAGTACTATATGCACGAATTTTGGC 58.864 40.000 0.00 0.00 0.00 4.52
47 48 6.481976 TCCAGTACTATATGCACGAATTTTGG 59.518 38.462 0.00 0.00 0.00 3.28
48 49 7.345192 GTCCAGTACTATATGCACGAATTTTG 58.655 38.462 0.00 0.00 0.00 2.44
49 50 6.200286 CGTCCAGTACTATATGCACGAATTTT 59.800 38.462 0.00 0.00 0.00 1.82
50 51 5.690409 CGTCCAGTACTATATGCACGAATTT 59.310 40.000 0.00 0.00 0.00 1.82
51 52 5.220381 CGTCCAGTACTATATGCACGAATT 58.780 41.667 0.00 0.00 0.00 2.17
52 53 4.321008 CCGTCCAGTACTATATGCACGAAT 60.321 45.833 0.00 0.00 0.00 3.34
53 54 3.004002 CCGTCCAGTACTATATGCACGAA 59.996 47.826 0.00 0.00 0.00 3.85
54 55 2.551032 CCGTCCAGTACTATATGCACGA 59.449 50.000 0.00 0.00 0.00 4.35
55 56 2.292569 ACCGTCCAGTACTATATGCACG 59.707 50.000 0.00 0.00 0.00 5.34
56 57 3.317149 TCACCGTCCAGTACTATATGCAC 59.683 47.826 0.00 0.00 0.00 4.57
57 58 3.558033 TCACCGTCCAGTACTATATGCA 58.442 45.455 0.00 0.00 0.00 3.96
58 59 4.486090 CATCACCGTCCAGTACTATATGC 58.514 47.826 0.00 0.00 0.00 3.14
59 60 4.765339 TCCATCACCGTCCAGTACTATATG 59.235 45.833 0.00 0.00 0.00 1.78
60 61 4.994282 TCCATCACCGTCCAGTACTATAT 58.006 43.478 0.00 0.00 0.00 0.86
61 62 4.442401 TCCATCACCGTCCAGTACTATA 57.558 45.455 0.00 0.00 0.00 1.31
62 63 3.308035 TCCATCACCGTCCAGTACTAT 57.692 47.619 0.00 0.00 0.00 2.12
63 64 2.812836 TCCATCACCGTCCAGTACTA 57.187 50.000 0.00 0.00 0.00 1.82
64 65 1.757118 CATCCATCACCGTCCAGTACT 59.243 52.381 0.00 0.00 0.00 2.73
65 66 1.806623 GCATCCATCACCGTCCAGTAC 60.807 57.143 0.00 0.00 0.00 2.73
66 67 0.464036 GCATCCATCACCGTCCAGTA 59.536 55.000 0.00 0.00 0.00 2.74
67 68 1.221840 GCATCCATCACCGTCCAGT 59.778 57.895 0.00 0.00 0.00 4.00
68 69 1.884464 CGCATCCATCACCGTCCAG 60.884 63.158 0.00 0.00 0.00 3.86
69 70 2.186644 CGCATCCATCACCGTCCA 59.813 61.111 0.00 0.00 0.00 4.02
70 71 2.173669 CACGCATCCATCACCGTCC 61.174 63.158 0.00 0.00 0.00 4.79
71 72 1.447838 ACACGCATCCATCACCGTC 60.448 57.895 0.00 0.00 0.00 4.79
72 73 1.741401 CACACGCATCCATCACCGT 60.741 57.895 0.00 0.00 0.00 4.83
73 74 0.811219 ATCACACGCATCCATCACCG 60.811 55.000 0.00 0.00 0.00 4.94
74 75 0.940126 GATCACACGCATCCATCACC 59.060 55.000 0.00 0.00 0.00 4.02
75 76 0.578683 CGATCACACGCATCCATCAC 59.421 55.000 0.00 0.00 0.00 3.06
76 77 0.459489 TCGATCACACGCATCCATCA 59.541 50.000 0.00 0.00 0.00 3.07
77 78 1.135046 CTCGATCACACGCATCCATC 58.865 55.000 0.00 0.00 0.00 3.51
78 79 0.746659 TCTCGATCACACGCATCCAT 59.253 50.000 0.00 0.00 0.00 3.41
79 80 0.746659 ATCTCGATCACACGCATCCA 59.253 50.000 0.00 0.00 0.00 3.41
80 81 1.135046 CATCTCGATCACACGCATCC 58.865 55.000 0.00 0.00 0.00 3.51
81 82 1.135046 CCATCTCGATCACACGCATC 58.865 55.000 0.00 0.00 0.00 3.91
82 83 0.461548 ACCATCTCGATCACACGCAT 59.538 50.000 0.00 0.00 0.00 4.73
83 84 0.179137 GACCATCTCGATCACACGCA 60.179 55.000 0.00 0.00 0.00 5.24
84 85 0.179137 TGACCATCTCGATCACACGC 60.179 55.000 0.00 0.00 0.00 5.34
85 86 1.920574 GTTGACCATCTCGATCACACG 59.079 52.381 0.00 0.00 0.00 4.49
86 87 2.668457 GTGTTGACCATCTCGATCACAC 59.332 50.000 0.00 0.00 0.00 3.82
87 88 2.353704 GGTGTTGACCATCTCGATCACA 60.354 50.000 0.00 0.00 42.59 3.58
88 89 2.271800 GGTGTTGACCATCTCGATCAC 58.728 52.381 0.00 0.00 42.59 3.06
89 90 1.207089 GGGTGTTGACCATCTCGATCA 59.793 52.381 0.00 0.00 45.25 2.92
90 91 1.207089 TGGGTGTTGACCATCTCGATC 59.793 52.381 0.00 0.00 45.25 3.69
91 92 1.066143 GTGGGTGTTGACCATCTCGAT 60.066 52.381 0.00 0.00 45.25 3.59
92 93 0.320374 GTGGGTGTTGACCATCTCGA 59.680 55.000 0.00 0.00 45.25 4.04
93 94 0.034756 TGTGGGTGTTGACCATCTCG 59.965 55.000 0.00 0.00 45.25 4.04
94 95 1.523758 GTGTGGGTGTTGACCATCTC 58.476 55.000 0.00 0.00 45.25 2.75
95 96 0.250295 CGTGTGGGTGTTGACCATCT 60.250 55.000 0.00 0.00 45.25 2.90
96 97 0.534203 ACGTGTGGGTGTTGACCATC 60.534 55.000 0.00 0.00 45.25 3.51
97 98 0.817634 CACGTGTGGGTGTTGACCAT 60.818 55.000 7.58 0.00 45.25 3.55
98 99 1.450491 CACGTGTGGGTGTTGACCA 60.450 57.895 7.58 0.00 45.25 4.02
99 100 3.416490 CACGTGTGGGTGTTGACC 58.584 61.111 7.58 0.00 42.27 4.02
113 114 3.062369 TCGAAAATATTAACGCCCACACG 59.938 43.478 8.64 0.00 39.50 4.49
114 115 4.603231 TCGAAAATATTAACGCCCACAC 57.397 40.909 8.64 0.00 0.00 3.82
115 116 4.696402 ACTTCGAAAATATTAACGCCCACA 59.304 37.500 0.00 0.00 0.00 4.17
116 117 5.064325 AGACTTCGAAAATATTAACGCCCAC 59.936 40.000 0.00 3.15 0.00 4.61
117 118 5.180271 AGACTTCGAAAATATTAACGCCCA 58.820 37.500 0.00 0.00 0.00 5.36
118 119 5.729974 AGACTTCGAAAATATTAACGCCC 57.270 39.130 0.00 0.98 0.00 6.13
119 120 9.366513 GATTAAGACTTCGAAAATATTAACGCC 57.633 33.333 9.74 2.51 0.00 5.68
120 121 9.910511 TGATTAAGACTTCGAAAATATTAACGC 57.089 29.630 9.74 7.17 0.00 4.84
130 131 9.042008 GGTATAGCATTGATTAAGACTTCGAAA 57.958 33.333 0.00 0.00 0.00 3.46
131 132 7.656137 GGGTATAGCATTGATTAAGACTTCGAA 59.344 37.037 4.02 0.00 0.00 3.71
132 133 7.152645 GGGTATAGCATTGATTAAGACTTCGA 58.847 38.462 4.02 0.00 0.00 3.71
146 147 2.891580 ACGATCTCACGGGTATAGCATT 59.108 45.455 4.02 0.00 37.61 3.56
152 153 3.483421 TCATGTACGATCTCACGGGTAT 58.517 45.455 0.00 0.00 37.61 2.73
155 156 2.357952 TCTTCATGTACGATCTCACGGG 59.642 50.000 0.00 0.00 37.61 5.28
158 159 9.678941 TGTATAAATCTTCATGTACGATCTCAC 57.321 33.333 0.00 0.00 0.00 3.51
208 210 4.396478 CGACTGAGACTTCAAGGTGATAGA 59.604 45.833 0.00 0.00 31.69 1.98
211 213 3.157881 TCGACTGAGACTTCAAGGTGAT 58.842 45.455 0.00 0.00 31.69 3.06
216 218 5.053140 TCTCAATCGACTGAGACTTCAAG 57.947 43.478 21.83 0.00 45.45 3.02
233 235 6.826231 TGAATTACGGGATTGCTAAATCTCAA 59.174 34.615 0.00 0.00 42.61 3.02
275 277 0.685097 TAGACCCATTAGGCCATCGC 59.315 55.000 5.01 0.00 40.58 4.58
316 318 0.466007 TACGCTCATGGCTACCGGTA 60.466 55.000 14.95 14.95 39.13 4.02
317 319 1.755395 TACGCTCATGGCTACCGGT 60.755 57.895 13.98 13.98 39.13 5.28
328 330 4.746951 CGTCCACGCGTACGCTCA 62.747 66.667 34.69 14.94 45.53 4.26
432 976 1.585006 GACGTCGGACATCACACCT 59.415 57.895 9.10 0.00 0.00 4.00
444 988 2.348872 GCATGCAGAAATATGGACGTCG 60.349 50.000 14.21 0.00 0.00 5.12
578 1133 3.008594 CCTCCTTCCTCGCTCTATCTCTA 59.991 52.174 0.00 0.00 0.00 2.43
579 1134 2.224769 CCTCCTTCCTCGCTCTATCTCT 60.225 54.545 0.00 0.00 0.00 3.10
580 1135 2.159382 CCTCCTTCCTCGCTCTATCTC 58.841 57.143 0.00 0.00 0.00 2.75
581 1136 1.203001 CCCTCCTTCCTCGCTCTATCT 60.203 57.143 0.00 0.00 0.00 1.98
582 1137 1.253100 CCCTCCTTCCTCGCTCTATC 58.747 60.000 0.00 0.00 0.00 2.08
583 1138 0.830023 GCCCTCCTTCCTCGCTCTAT 60.830 60.000 0.00 0.00 0.00 1.98
599 1154 0.310854 CAGTGACGGTTTCAAAGCCC 59.689 55.000 0.00 0.00 35.39 5.19
709 1270 1.126113 GTGTACATGTTTGACGGCGAG 59.874 52.381 16.62 0.00 0.00 5.03
735 1296 3.481306 CCATGTTTGATTGTCGTCGTACG 60.481 47.826 9.53 9.53 44.19 3.67
736 1297 3.723835 GCCATGTTTGATTGTCGTCGTAC 60.724 47.826 0.00 0.00 0.00 3.67
737 1298 2.413796 GCCATGTTTGATTGTCGTCGTA 59.586 45.455 0.00 0.00 0.00 3.43
738 1299 1.196808 GCCATGTTTGATTGTCGTCGT 59.803 47.619 0.00 0.00 0.00 4.34
799 1360 1.682451 GCATGCATGGCAGGGTTGAT 61.682 55.000 27.34 0.00 43.65 2.57
854 1419 6.036083 CGATTTCCCTTGCTTATATACATCCG 59.964 42.308 0.00 0.00 0.00 4.18
855 1420 6.879458 ACGATTTCCCTTGCTTATATACATCC 59.121 38.462 0.00 0.00 0.00 3.51
856 1421 7.624344 GCACGATTTCCCTTGCTTATATACATC 60.624 40.741 0.00 0.00 32.00 3.06
857 1422 6.149474 GCACGATTTCCCTTGCTTATATACAT 59.851 38.462 0.00 0.00 32.00 2.29
858 1423 5.468746 GCACGATTTCCCTTGCTTATATACA 59.531 40.000 0.00 0.00 32.00 2.29
995 1561 0.317799 CCTCGGCATCTCCATCTCAG 59.682 60.000 0.00 0.00 34.01 3.35
1281 1874 2.456942 ATTAACGACGTGCATGCATG 57.543 45.000 33.18 33.18 38.78 4.06
1282 1875 3.170505 CAAATTAACGACGTGCATGCAT 58.829 40.909 25.64 8.94 0.00 3.96
1283 1876 2.031595 ACAAATTAACGACGTGCATGCA 60.032 40.909 18.46 18.46 0.00 3.96
1815 3870 1.204786 TCCCGAACACATGGTCCCAT 61.205 55.000 0.00 0.00 37.08 4.00
1882 3944 4.809496 CGGCAGGGGCTTGAGCAT 62.809 66.667 5.24 0.00 44.36 3.79
1922 3991 1.640069 CTGATCGAGCATGCCGTTG 59.360 57.895 22.22 7.93 0.00 4.10
1987 4056 6.200854 TGCGTGCTTATTGACTAATCTACATG 59.799 38.462 0.00 0.00 0.00 3.21
2063 4136 8.653191 ACATCTCACTAGCTACTATACTACACT 58.347 37.037 0.00 0.00 0.00 3.55
2064 4137 8.714179 CACATCTCACTAGCTACTATACTACAC 58.286 40.741 0.00 0.00 0.00 2.90
2065 4138 7.388224 GCACATCTCACTAGCTACTATACTACA 59.612 40.741 0.00 0.00 0.00 2.74
2066 4139 7.412129 CGCACATCTCACTAGCTACTATACTAC 60.412 44.444 0.00 0.00 0.00 2.73
2067 4140 6.590677 CGCACATCTCACTAGCTACTATACTA 59.409 42.308 0.00 0.00 0.00 1.82
2068 4141 5.410132 CGCACATCTCACTAGCTACTATACT 59.590 44.000 0.00 0.00 0.00 2.12
2069 4142 5.179742 ACGCACATCTCACTAGCTACTATAC 59.820 44.000 0.00 0.00 0.00 1.47
2070 4143 5.179555 CACGCACATCTCACTAGCTACTATA 59.820 44.000 0.00 0.00 0.00 1.31
2071 4144 4.023622 CACGCACATCTCACTAGCTACTAT 60.024 45.833 0.00 0.00 0.00 2.12
2072 4145 3.312697 CACGCACATCTCACTAGCTACTA 59.687 47.826 0.00 0.00 0.00 1.82
2075 4148 2.092323 ACACGCACATCTCACTAGCTA 58.908 47.619 0.00 0.00 0.00 3.32
2079 4152 5.355910 TGACTATAACACGCACATCTCACTA 59.644 40.000 0.00 0.00 0.00 2.74
2097 4170 1.022735 CACGTCTACCCGCTGACTAT 58.977 55.000 0.00 0.00 0.00 2.12
2098 4171 0.036105 TCACGTCTACCCGCTGACTA 60.036 55.000 0.00 0.00 0.00 2.59
2204 4679 7.068593 AGACCAATTCAATTCAAACAGAACTCA 59.931 33.333 0.00 0.00 39.49 3.41
2232 4707 3.507162 TGGAATTTGCTCTGAGTTCCA 57.493 42.857 18.36 18.36 44.30 3.53
2236 4711 3.942829 TCGATTGGAATTTGCTCTGAGT 58.057 40.909 6.53 0.00 0.00 3.41
2288 4763 6.099341 ACTGTCAACCAAACAACAGAAATTC 58.901 36.000 8.24 0.00 41.26 2.17
2296 4771 3.192633 ACTCCAACTGTCAACCAAACAAC 59.807 43.478 0.00 0.00 0.00 3.32
2327 4802 7.543359 TCTGGAATGGAAAGTTGATTGATTT 57.457 32.000 0.00 0.00 0.00 2.17
2334 4809 5.598005 ACAACAATCTGGAATGGAAAGTTGA 59.402 36.000 0.00 0.00 36.25 3.18
2341 4816 6.669125 ATTCAAACAACAATCTGGAATGGA 57.331 33.333 0.00 0.00 0.00 3.41
2342 4817 8.036575 ACATATTCAAACAACAATCTGGAATGG 58.963 33.333 0.00 0.00 0.00 3.16
2347 4822 9.912634 AGTTTACATATTCAAACAACAATCTGG 57.087 29.630 10.19 0.00 37.16 3.86
2391 4866 9.654663 AAGCGTTTAGAACACTAAAATAGAGAT 57.345 29.630 0.00 0.00 37.69 2.75
2392 4867 9.485206 AAAGCGTTTAGAACACTAAAATAGAGA 57.515 29.630 0.00 0.00 37.69 3.10
2411 4886 9.106070 CCCTCTGTAAACTAATATAAAAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
2412 4887 8.480501 TCCCTCTGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
2413 4888 8.882415 TCCCTCTGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
2414 4889 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
2418 4893 9.193806 ACGAACTCCCTCTGTAAACTAATATAA 57.806 33.333 0.00 0.00 0.00 0.98
2419 4894 8.757982 ACGAACTCCCTCTGTAAACTAATATA 57.242 34.615 0.00 0.00 0.00 0.86
2420 4895 7.657023 ACGAACTCCCTCTGTAAACTAATAT 57.343 36.000 0.00 0.00 0.00 1.28
2421 4896 7.039504 ACAACGAACTCCCTCTGTAAACTAATA 60.040 37.037 0.00 0.00 0.00 0.98
2422 4897 5.997384 ACGAACTCCCTCTGTAAACTAAT 57.003 39.130 0.00 0.00 0.00 1.73
2423 4898 5.069516 ACAACGAACTCCCTCTGTAAACTAA 59.930 40.000 0.00 0.00 0.00 2.24
2424 4899 4.586001 ACAACGAACTCCCTCTGTAAACTA 59.414 41.667 0.00 0.00 0.00 2.24
2425 4900 3.387050 ACAACGAACTCCCTCTGTAAACT 59.613 43.478 0.00 0.00 0.00 2.66
2426 4901 3.725490 ACAACGAACTCCCTCTGTAAAC 58.275 45.455 0.00 0.00 0.00 2.01
2427 4902 4.124238 CAACAACGAACTCCCTCTGTAAA 58.876 43.478 0.00 0.00 0.00 2.01
2428 4903 3.493699 CCAACAACGAACTCCCTCTGTAA 60.494 47.826 0.00 0.00 0.00 2.41
2429 4904 2.036733 CCAACAACGAACTCCCTCTGTA 59.963 50.000 0.00 0.00 0.00 2.74
2430 4905 1.202651 CCAACAACGAACTCCCTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
2431 4906 1.202651 ACCAACAACGAACTCCCTCTG 60.203 52.381 0.00 0.00 0.00 3.35
2432 4907 1.129058 ACCAACAACGAACTCCCTCT 58.871 50.000 0.00 0.00 0.00 3.69
2433 4908 1.602377 CAACCAACAACGAACTCCCTC 59.398 52.381 0.00 0.00 0.00 4.30
2434 4909 1.210967 TCAACCAACAACGAACTCCCT 59.789 47.619 0.00 0.00 0.00 4.20
2435 4910 1.670791 TCAACCAACAACGAACTCCC 58.329 50.000 0.00 0.00 0.00 4.30
2436 4911 3.982576 AATCAACCAACAACGAACTCC 57.017 42.857 0.00 0.00 0.00 3.85
2437 4912 6.147164 TCTGATAATCAACCAACAACGAACTC 59.853 38.462 0.00 0.00 0.00 3.01
2438 4913 5.995282 TCTGATAATCAACCAACAACGAACT 59.005 36.000 0.00 0.00 0.00 3.01
2439 4914 6.236017 TCTGATAATCAACCAACAACGAAC 57.764 37.500 0.00 0.00 0.00 3.95
2440 4915 6.869315 TTCTGATAATCAACCAACAACGAA 57.131 33.333 0.00 0.00 0.00 3.85
2480 4955 6.833342 GTACTTTAAAAGGACTCGTGTTCA 57.167 37.500 0.00 0.00 39.36 3.18
2498 4980 7.122715 ACTGAGTATTCTCTCATGGAGTACTT 58.877 38.462 0.00 0.00 42.47 2.24
2573 5055 7.065683 AGCTGGAACAAAAACGAAATGAAAAAT 59.934 29.630 0.00 0.00 38.70 1.82
2611 5093 8.738645 ACTAAGACCCAGAATGAAATCAATAC 57.261 34.615 0.00 0.00 39.69 1.89
2666 5148 2.093306 TGAATCAAGCGTGTCGGAAT 57.907 45.000 0.00 0.00 0.00 3.01
2667 5149 1.872388 TTGAATCAAGCGTGTCGGAA 58.128 45.000 0.00 0.00 0.00 4.30
2669 5151 1.399727 GGTTTGAATCAAGCGTGTCGG 60.400 52.381 3.84 0.00 0.00 4.79
2690 5173 5.565509 TCAATGTGTCTTTATGGGCTAACA 58.434 37.500 0.00 0.00 0.00 2.41
2714 5197 0.466555 GTGGGCTTTGTGGGTGTGTA 60.467 55.000 0.00 0.00 0.00 2.90
2733 5216 4.794648 TTGATTGGGGAGGCGCGG 62.795 66.667 8.83 0.00 0.00 6.46
2734 5217 2.749839 TTTGATTGGGGAGGCGCG 60.750 61.111 0.00 0.00 0.00 6.86
2735 5218 1.976474 TGTTTGATTGGGGAGGCGC 60.976 57.895 0.00 0.00 0.00 6.53
2736 5219 0.893270 TGTGTTTGATTGGGGAGGCG 60.893 55.000 0.00 0.00 0.00 5.52
2737 5220 1.337118 TTGTGTTTGATTGGGGAGGC 58.663 50.000 0.00 0.00 0.00 4.70
2738 5221 3.164268 TCATTGTGTTTGATTGGGGAGG 58.836 45.455 0.00 0.00 0.00 4.30
2739 5222 4.142093 GGATCATTGTGTTTGATTGGGGAG 60.142 45.833 0.00 0.00 34.03 4.30
2740 5223 3.768757 GGATCATTGTGTTTGATTGGGGA 59.231 43.478 0.00 0.00 34.03 4.81
2741 5224 3.514706 TGGATCATTGTGTTTGATTGGGG 59.485 43.478 0.00 0.00 34.03 4.96
2742 5225 4.804868 TGGATCATTGTGTTTGATTGGG 57.195 40.909 0.00 0.00 34.03 4.12
2743 5226 6.399743 TGAATGGATCATTGTGTTTGATTGG 58.600 36.000 0.00 0.00 33.90 3.16
2744 5227 7.547722 ACATGAATGGATCATTGTGTTTGATTG 59.452 33.333 0.00 0.00 46.85 2.67
2745 5228 7.617225 ACATGAATGGATCATTGTGTTTGATT 58.383 30.769 0.00 0.00 46.85 2.57
2746 5229 7.093684 TGACATGAATGGATCATTGTGTTTGAT 60.094 33.333 0.00 0.00 46.85 2.57
2747 5230 6.208994 TGACATGAATGGATCATTGTGTTTGA 59.791 34.615 0.00 0.00 46.85 2.69
2748 5231 6.309494 GTGACATGAATGGATCATTGTGTTTG 59.691 38.462 0.00 0.00 46.85 2.93
2749 5232 6.392354 GTGACATGAATGGATCATTGTGTTT 58.608 36.000 0.00 0.00 46.85 2.83
2750 5233 5.105635 GGTGACATGAATGGATCATTGTGTT 60.106 40.000 0.00 0.00 46.85 3.32
2751 5234 4.400251 GGTGACATGAATGGATCATTGTGT 59.600 41.667 0.00 3.57 46.85 3.72
2752 5235 4.399934 TGGTGACATGAATGGATCATTGTG 59.600 41.667 0.00 0.71 46.85 3.33
2753 5236 4.602107 TGGTGACATGAATGGATCATTGT 58.398 39.130 0.00 0.00 46.85 2.71
2754 5237 4.037565 CCTGGTGACATGAATGGATCATTG 59.962 45.833 0.00 0.00 46.85 2.82
2755 5238 4.212716 CCTGGTGACATGAATGGATCATT 58.787 43.478 0.00 0.00 46.85 2.57
2757 5240 2.684630 GCCTGGTGACATGAATGGATCA 60.685 50.000 0.00 0.00 43.67 2.92
2758 5241 1.952296 GCCTGGTGACATGAATGGATC 59.048 52.381 0.00 0.00 41.51 3.36
2759 5242 1.567649 AGCCTGGTGACATGAATGGAT 59.432 47.619 0.00 0.00 41.51 3.41
2760 5243 0.994247 AGCCTGGTGACATGAATGGA 59.006 50.000 0.00 0.00 41.51 3.41
2761 5244 1.843368 AAGCCTGGTGACATGAATGG 58.157 50.000 0.00 0.00 41.51 3.16
2762 5245 2.357009 GCTAAGCCTGGTGACATGAATG 59.643 50.000 0.00 0.00 41.51 2.67
2763 5246 2.648059 GCTAAGCCTGGTGACATGAAT 58.352 47.619 0.00 0.00 41.51 2.57
2764 5247 1.675714 CGCTAAGCCTGGTGACATGAA 60.676 52.381 0.00 0.00 41.51 2.57
2765 5248 0.108186 CGCTAAGCCTGGTGACATGA 60.108 55.000 0.00 0.00 41.51 3.07
2766 5249 1.091771 CCGCTAAGCCTGGTGACATG 61.092 60.000 0.00 0.00 41.51 3.21
2767 5250 1.221840 CCGCTAAGCCTGGTGACAT 59.778 57.895 0.00 0.00 41.51 3.06
2768 5251 2.662596 CCGCTAAGCCTGGTGACA 59.337 61.111 0.00 0.00 39.59 3.58
2769 5252 2.125106 CCCGCTAAGCCTGGTGAC 60.125 66.667 0.00 0.00 0.00 3.67
2770 5253 1.916273 TTCCCGCTAAGCCTGGTGA 60.916 57.895 0.00 0.00 0.00 4.02
2771 5254 1.745489 GTTCCCGCTAAGCCTGGTG 60.745 63.158 0.00 0.00 0.00 4.17
2772 5255 1.900545 GAGTTCCCGCTAAGCCTGGT 61.901 60.000 0.00 0.00 0.00 4.00
2773 5256 1.153349 GAGTTCCCGCTAAGCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
2774 5257 1.153349 GGAGTTCCCGCTAAGCCTG 60.153 63.158 0.00 0.00 0.00 4.85
2775 5258 0.032416 TAGGAGTTCCCGCTAAGCCT 60.032 55.000 0.00 0.00 40.87 4.58
2776 5259 1.049402 ATAGGAGTTCCCGCTAAGCC 58.951 55.000 0.00 0.00 40.87 4.35
2777 5260 2.484889 CAATAGGAGTTCCCGCTAAGC 58.515 52.381 0.00 0.00 40.87 3.09
2778 5261 2.698797 TCCAATAGGAGTTCCCGCTAAG 59.301 50.000 0.00 0.00 39.61 2.18
2779 5262 2.433239 GTCCAATAGGAGTTCCCGCTAA 59.567 50.000 0.00 0.00 46.92 3.09
2780 5263 2.037144 GTCCAATAGGAGTTCCCGCTA 58.963 52.381 0.00 0.00 46.92 4.26
2781 5264 0.831307 GTCCAATAGGAGTTCCCGCT 59.169 55.000 0.00 0.00 46.92 5.52
2782 5265 0.529992 CGTCCAATAGGAGTTCCCGC 60.530 60.000 0.00 0.00 46.92 6.13
2783 5266 0.529992 GCGTCCAATAGGAGTTCCCG 60.530 60.000 0.00 0.00 46.92 5.14
2784 5267 0.529992 CGCGTCCAATAGGAGTTCCC 60.530 60.000 0.00 0.00 46.92 3.97
2785 5268 0.175073 ACGCGTCCAATAGGAGTTCC 59.825 55.000 5.58 0.00 46.92 3.62
2786 5269 1.925185 GAACGCGTCCAATAGGAGTTC 59.075 52.381 14.44 0.00 46.92 3.01
2787 5270 1.549170 AGAACGCGTCCAATAGGAGTT 59.451 47.619 14.44 0.00 46.92 3.01
2788 5271 1.135083 CAGAACGCGTCCAATAGGAGT 60.135 52.381 14.44 0.00 46.92 3.85
2789 5272 1.560923 CAGAACGCGTCCAATAGGAG 58.439 55.000 14.44 0.00 46.92 3.69
2790 5273 0.459585 GCAGAACGCGTCCAATAGGA 60.460 55.000 14.44 0.00 43.21 2.94
2791 5274 2.006772 GCAGAACGCGTCCAATAGG 58.993 57.895 14.44 0.00 0.00 2.57
2803 5286 2.560896 GACGACATTTTGACGCAGAAC 58.439 47.619 0.00 0.00 38.98 3.01
2804 5287 1.191425 CGACGACATTTTGACGCAGAA 59.809 47.619 0.00 0.00 38.98 3.02
2805 5288 0.781787 CGACGACATTTTGACGCAGA 59.218 50.000 0.00 0.00 38.98 4.26
2806 5289 0.785708 GCGACGACATTTTGACGCAG 60.786 55.000 10.42 0.00 44.29 5.18
2807 5290 1.203065 GCGACGACATTTTGACGCA 59.797 52.632 10.42 0.00 44.29 5.24
2808 5291 1.509162 GGCGACGACATTTTGACGC 60.509 57.895 7.32 7.32 38.98 5.19
2809 5292 0.450482 GTGGCGACGACATTTTGACG 60.450 55.000 6.69 0.00 41.00 4.35
2810 5293 3.361443 GTGGCGACGACATTTTGAC 57.639 52.632 6.69 0.00 0.00 3.18
2858 5341 4.508128 ACCGGTACAGCGCGATGG 62.508 66.667 29.52 13.04 0.00 3.51
2859 5342 3.254654 CACCGGTACAGCGCGATG 61.255 66.667 24.69 24.69 0.00 3.84
2860 5343 4.508128 CCACCGGTACAGCGCGAT 62.508 66.667 12.10 0.00 0.00 4.58
2862 5345 4.728102 TTCCACCGGTACAGCGCG 62.728 66.667 6.87 0.00 0.00 6.86
2863 5346 2.357760 TTTCCACCGGTACAGCGC 60.358 61.111 6.87 0.00 0.00 5.92
2864 5347 0.320073 TTCTTTCCACCGGTACAGCG 60.320 55.000 6.87 0.00 0.00 5.18
2865 5348 1.886886 TTTCTTTCCACCGGTACAGC 58.113 50.000 6.87 0.00 0.00 4.40
2866 5349 2.812011 CCTTTTCTTTCCACCGGTACAG 59.188 50.000 6.87 0.00 0.00 2.74
2867 5350 2.438763 TCCTTTTCTTTCCACCGGTACA 59.561 45.455 6.87 0.00 0.00 2.90
2868 5351 3.130280 TCCTTTTCTTTCCACCGGTAC 57.870 47.619 6.87 0.00 0.00 3.34
2869 5352 3.746940 CTTCCTTTTCTTTCCACCGGTA 58.253 45.455 6.87 0.00 0.00 4.02
2870 5353 2.583143 CTTCCTTTTCTTTCCACCGGT 58.417 47.619 0.00 0.00 0.00 5.28
2871 5354 1.269723 GCTTCCTTTTCTTTCCACCGG 59.730 52.381 0.00 0.00 0.00 5.28
2872 5355 1.953686 TGCTTCCTTTTCTTTCCACCG 59.046 47.619 0.00 0.00 0.00 4.94
2873 5356 4.400529 TTTGCTTCCTTTTCTTTCCACC 57.599 40.909 0.00 0.00 0.00 4.61
2894 5377 0.539669 CGCCTCACCTTCCCCTTTTT 60.540 55.000 0.00 0.00 0.00 1.94
2895 5378 1.074951 CGCCTCACCTTCCCCTTTT 59.925 57.895 0.00 0.00 0.00 2.27
2896 5379 2.757077 CGCCTCACCTTCCCCTTT 59.243 61.111 0.00 0.00 0.00 3.11
2897 5380 4.035102 GCGCCTCACCTTCCCCTT 62.035 66.667 0.00 0.00 0.00 3.95
2901 5384 3.959991 GAGTGGCGCCTCACCTTCC 62.960 68.421 29.70 6.63 38.34 3.46
2902 5385 2.435059 GAGTGGCGCCTCACCTTC 60.435 66.667 29.70 13.69 38.34 3.46
2903 5386 4.379243 CGAGTGGCGCCTCACCTT 62.379 66.667 29.70 7.97 38.34 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.