AutoCloner

Multiple sequence alignment - TraesCS4B01G099600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G099600	chr4B	100.000	4973	0	0	1	4973	105000652	105005624	0.000000e+00	9184.0
1	TraesCS4B01G099600	chr4B	82.598	408	71	0	2	409	339336780	339336373	1.320000e-95	361.0
2	TraesCS4B01G099600	chr4D	94.940	3320	108	22	1042	4330	71295197	71291907	0.000000e+00	5145.0
3	TraesCS4B01G099600	chr4D	96.070	229	7	2	781	1008	71295419	71295192	6.080000e-99	372.0
4	TraesCS4B01G099600	chr4D	100.000	29	0	0	1983	2011	39980577	39980549	3.000000e-03	54.7
5	TraesCS4B01G099600	chr4A	93.725	3315	140	30	1042	4330	526640081	526643353	0.000000e+00	4907.0
6	TraesCS4B01G099600	chr4A	83.971	418	32	17	625	1008	526639670	526640086	7.860000e-98	368.0
7	TraesCS4B01G099600	chr4A	100.000	28	0	0	1984	2011	106339566	106339593	9.000000e-03	52.8
8	TraesCS4B01G099600	chr6D	92.092	607	44	3	4367	4973	60230048	60229446	0.000000e+00	852.0
9	TraesCS4B01G099600	chr6D	89.967	608	51	9	4366	4973	310404454	310403857	0.000000e+00	795.0
10	TraesCS4B01G099600	chr1A	91.707	615	45	5	4360	4973	586899250	586899859	0.000000e+00	848.0
11	TraesCS4B01G099600	chr2D	91.558	616	48	3	4360	4973	11036157	11036770	0.000000e+00	846.0
12	TraesCS4B01G099600	chr2D	91.566	581	45	3	4395	4973	471991837	471991259	0.000000e+00	798.0
13	TraesCS4B01G099600	chr6A	91.790	609	46	3	4365	4973	450092669	450092065	0.000000e+00	845.0
14	TraesCS4B01G099600	chr7B	89.448	616	53	8	4366	4973	447983188	447982577	0.000000e+00	767.0
15	TraesCS4B01G099600	chr7A	89.055	603	60	4	4369	4968	547528495	547527896	0.000000e+00	743.0
16	TraesCS4B01G099600	chr2A	87.540	618	72	4	4358	4972	779843718	779843103	0.000000e+00	710.0
17	TraesCS4B01G099600	chrUn	87.286	409	51	1	1	409	273810650	273811057	2.710000e-127	466.0
18	TraesCS4B01G099600	chrUn	86.797	409	53	1	1	409	457771366	457770959	5.870000e-124	455.0
19	TraesCS4B01G099600	chrUn	86.553	409	54	1	1	409	40275828	40276235	2.730000e-122	449.0
20	TraesCS4B01G099600	chr1B	86.585	410	53	2	1	409	106178766	106179174	7.590000e-123	451.0
21	TraesCS4B01G099600	chr1B	86.432	398	52	1	1	398	164140543	164140938	7.650000e-118	435.0
22	TraesCS4B01G099600	chr3B	87.088	364	47	0	41	404	636466229	636465866	3.580000e-111	412.0
23	TraesCS4B01G099600	chr3B	80.749	374	70	2	26	398	283731904	283731532	1.750000e-74	291.0
24	TraesCS4B01G099600	chr6B	83.598	378	59	3	33	409	632751867	632751492	7.920000e-93	351.0
25	TraesCS4B01G099600	chr5D	88.506	87	10	0	2559	2645	190498081	190498167	6.810000e-19	106.0
26	TraesCS4B01G099600	chr5D	81.081	111	21	0	2171	2281	190497643	190497753	6.860000e-14	89.8
27	TraesCS4B01G099600	chr5B	88.506	87	10	0	2559	2645	214129301	214129387	6.810000e-19	106.0
28	TraesCS4B01G099600	chr5B	81.081	111	21	0	2171	2281	214128846	214128956	6.860000e-14	89.8
29	TraesCS4B01G099600	chr5B	100.000	28	0	0	1982	2009	645557913	645557940	9.000000e-03	52.8
30	TraesCS4B01G099600	chr5A	88.506	87	10	0	2559	2645	229499209	229499123	6.810000e-19	106.0
31	TraesCS4B01G099600	chr3A	97.143	35	1	0	699	733	355251293	355251327	5.380000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G099600	chr4B	105000652	105005624	4972	False	9184.0	9184	100.000	1	4973	1	chr4B.!!$F1	4972
1	TraesCS4B01G099600	chr4D	71291907	71295419	3512	True	2758.5	5145	95.505	781	4330	2	chr4D.!!$R2	3549
2	TraesCS4B01G099600	chr4A	526639670	526643353	3683	False	2637.5	4907	88.848	625	4330	2	chr4A.!!$F2	3705
3	TraesCS4B01G099600	chr6D	60229446	60230048	602	True	852.0	852	92.092	4367	4973	1	chr6D.!!$R1	606
4	TraesCS4B01G099600	chr6D	310403857	310404454	597	True	795.0	795	89.967	4366	4973	1	chr6D.!!$R2	607
5	TraesCS4B01G099600	chr1A	586899250	586899859	609	False	848.0	848	91.707	4360	4973	1	chr1A.!!$F1	613
6	TraesCS4B01G099600	chr2D	11036157	11036770	613	False	846.0	846	91.558	4360	4973	1	chr2D.!!$F1	613
7	TraesCS4B01G099600	chr2D	471991259	471991837	578	True	798.0	798	91.566	4395	4973	1	chr2D.!!$R1	578
8	TraesCS4B01G099600	chr6A	450092065	450092669	604	True	845.0	845	91.790	4365	4973	1	chr6A.!!$R1	608
9	TraesCS4B01G099600	chr7B	447982577	447983188	611	True	767.0	767	89.448	4366	4973	1	chr7B.!!$R1	607
10	TraesCS4B01G099600	chr7A	547527896	547528495	599	True	743.0	743	89.055	4369	4968	1	chr7A.!!$R1	599
11	TraesCS4B01G099600	chr2A	779843103	779843718	615	True	710.0	710	87.540	4358	4972	1	chr2A.!!$R1	614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
245	246	0.034059	AGGTGCTGGAGTTCGTCAAG	59.966	55.0	3.02	F
1509	1544	0.033228	CCACGCCTCTCCAGATCATC	59.967	60.0	2.92	F
2698	2742	0.101399	CTACTTCATCAGCGGCTCGT	59.899	55.0	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1579	1614	0.037326	AATGCCGTCAGCTTTCTCGA	60.037	50.0	44.23	4.04	R
3058	3111	0.387622	CTTGCAATCTGGCACCAACG	60.388	55.0	44.86	4.10	R
3989	4049	0.035439	TCCCTTCCAACGAATCCAGC	60.035	55.0	0.00	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	2.579738	GACCGGCCTCAGACCTTC	59.420	66.667	0.00	0.00	0.00	3.46
18	19	3.358076	GACCGGCCTCAGACCTTCG	62.358	68.421	0.00	0.00	0.00	3.79
19	20	4.148825	CCGGCCTCAGACCTTCGG	62.149	72.222	0.00	0.00	0.00	4.30
20	21	4.821589	CGGCCTCAGACCTTCGGC	62.822	72.222	0.00	0.00	41.75	5.54
21	22	4.821589	GGCCTCAGACCTTCGGCG	62.822	72.222	0.00	0.00	43.38	6.46
22	23	3.760035	GCCTCAGACCTTCGGCGA	61.760	66.667	4.99	4.99	32.22	5.54
23	24	2.970639	CCTCAGACCTTCGGCGAA	59.029	61.111	22.33	22.33	0.00	4.70
24	25	1.446272	CCTCAGACCTTCGGCGAAC	60.446	63.158	19.83	9.52	0.00	3.95
25	26	1.289066	CTCAGACCTTCGGCGAACA	59.711	57.895	19.83	0.00	0.00	3.18
26	27	0.734253	CTCAGACCTTCGGCGAACAG	60.734	60.000	19.83	15.29	0.00	3.16
44	45	2.704108	GCTCATGGCTGTCTGGATG	58.296	57.895	0.00	0.00	38.06	3.51
45	46	1.445716	GCTCATGGCTGTCTGGATGC	61.446	60.000	0.00	0.00	38.06	3.91
46	47	1.153309	TCATGGCTGTCTGGATGCG	60.153	57.895	0.00	0.00	0.00	4.73
47	48	2.515523	ATGGCTGTCTGGATGCGC	60.516	61.111	0.00	0.00	0.00	6.09
48	49	4.783621	TGGCTGTCTGGATGCGCC	62.784	66.667	4.18	0.00	41.06	6.53
49	50	4.479993	GGCTGTCTGGATGCGCCT	62.480	66.667	4.18	0.00	37.76	5.52
50	51	2.894387	GCTGTCTGGATGCGCCTC	60.894	66.667	4.18	3.99	37.63	4.70
51	52	2.584418	CTGTCTGGATGCGCCTCG	60.584	66.667	4.18	0.00	37.63	4.63
52	53	3.068064	TGTCTGGATGCGCCTCGA	61.068	61.111	4.18	0.00	37.63	4.04
53	54	2.279120	GTCTGGATGCGCCTCGAG	60.279	66.667	16.59	16.59	37.63	4.04
54	55	4.212913	TCTGGATGCGCCTCGAGC	62.213	66.667	17.62	1.53	37.63	5.03
57	58	4.838152	GGATGCGCCTCGAGCCAA	62.838	66.667	6.99	0.00	38.78	4.52
58	59	2.590007	GATGCGCCTCGAGCCAAT	60.590	61.111	6.99	0.00	38.78	3.16
59	60	2.890109	GATGCGCCTCGAGCCAATG	61.890	63.158	6.99	0.00	38.78	2.82
94	95	3.482783	GCTTCAGCGCACCGAGTC	61.483	66.667	11.47	0.00	0.00	3.36
95	96	3.175240	CTTCAGCGCACCGAGTCG	61.175	66.667	11.47	5.29	0.00	4.18
102	103	4.057428	GCACCGAGTCGCAGGTCT	62.057	66.667	7.12	0.00	39.00	3.85
103	104	2.651361	CACCGAGTCGCAGGTCTT	59.349	61.111	7.12	0.00	39.00	3.01
104	105	1.734477	CACCGAGTCGCAGGTCTTG	60.734	63.158	7.12	0.00	39.00	3.02
105	106	2.125912	CCGAGTCGCAGGTCTTGG	60.126	66.667	7.12	0.00	0.00	3.61
106	107	2.636412	CCGAGTCGCAGGTCTTGGA	61.636	63.158	7.12	0.00	36.23	3.53
107	108	1.153939	CGAGTCGCAGGTCTTGGAG	60.154	63.158	0.00	0.00	0.00	3.86
108	109	1.216710	GAGTCGCAGGTCTTGGAGG	59.783	63.158	0.00	0.00	0.00	4.30
109	110	2.232298	GAGTCGCAGGTCTTGGAGGG	62.232	65.000	0.00	0.00	0.00	4.30
110	111	3.706373	TCGCAGGTCTTGGAGGGC	61.706	66.667	0.00	0.00	0.00	5.19
111	112	3.710722	CGCAGGTCTTGGAGGGCT	61.711	66.667	0.00	0.00	0.00	5.19
112	113	2.759795	GCAGGTCTTGGAGGGCTT	59.240	61.111	0.00	0.00	0.00	4.35
113	114	1.676967	GCAGGTCTTGGAGGGCTTG	60.677	63.158	0.00	0.00	0.00	4.01
114	115	1.763770	CAGGTCTTGGAGGGCTTGT	59.236	57.895	0.00	0.00	0.00	3.16
115	116	0.607489	CAGGTCTTGGAGGGCTTGTG	60.607	60.000	0.00	0.00	0.00	3.33
116	117	1.303643	GGTCTTGGAGGGCTTGTGG	60.304	63.158	0.00	0.00	0.00	4.17
117	118	1.973812	GTCTTGGAGGGCTTGTGGC	60.974	63.158	0.00	0.00	40.90	5.01
132	133	4.176752	GGCCGGGTGGTCAGATCC	62.177	72.222	2.18	0.00	40.65	3.36
133	134	4.176752	GCCGGGTGGTCAGATCCC	62.177	72.222	2.18	0.00	37.67	3.85
136	137	4.530857	GGGTGGTCAGATCCCGCG	62.531	72.222	0.00	0.00	33.14	6.46
137	138	4.530857	GGTGGTCAGATCCCGCGG	62.531	72.222	21.04	21.04	33.14	6.46
138	139	3.458163	GTGGTCAGATCCCGCGGA	61.458	66.667	30.73	13.82	35.55	5.54
139	140	3.458163	TGGTCAGATCCCGCGGAC	61.458	66.667	30.73	15.95	32.98	4.79
140	141	3.148279	GGTCAGATCCCGCGGACT	61.148	66.667	30.73	19.65	32.98	3.85
141	142	2.413765	GTCAGATCCCGCGGACTC	59.586	66.667	30.73	22.14	32.98	3.36
142	143	2.833582	TCAGATCCCGCGGACTCC	60.834	66.667	30.73	12.74	32.98	3.85
143	144	3.917760	CAGATCCCGCGGACTCCC	61.918	72.222	30.73	10.80	32.98	4.30
144	145	4.458829	AGATCCCGCGGACTCCCA	62.459	66.667	30.73	2.70	32.98	4.37
145	146	3.917760	GATCCCGCGGACTCCCAG	61.918	72.222	30.73	8.04	32.98	4.45
146	147	4.779733	ATCCCGCGGACTCCCAGT	62.780	66.667	30.73	0.00	32.98	4.00
151	152	4.131088	GCGGACTCCCAGTCGGAC	62.131	72.222	13.70	0.00	45.96	4.79
152	153	3.812019	CGGACTCCCAGTCGGACG	61.812	72.222	1.89	0.00	45.96	4.79
153	154	3.450115	GGACTCCCAGTCGGACGG	61.450	72.222	1.89	7.21	45.96	4.79
154	155	4.131088	GACTCCCAGTCGGACGGC	62.131	72.222	11.80	0.00	35.28	5.68
171	172	2.046892	CCGACTGGCTGAAGGTGG	60.047	66.667	0.00	0.00	0.00	4.61
172	173	2.743928	CGACTGGCTGAAGGTGGC	60.744	66.667	0.00	0.00	0.00	5.01
173	174	2.743928	GACTGGCTGAAGGTGGCG	60.744	66.667	0.00	0.00	0.00	5.69
174	175	4.335647	ACTGGCTGAAGGTGGCGG	62.336	66.667	0.00	0.00	41.40	6.13
179	180	3.423154	CTGAAGGTGGCGGCGAAC	61.423	66.667	12.98	7.99	0.00	3.95
199	200	4.511636	GCTCGAAGCCTGGAAGAG	57.488	61.111	0.00	0.81	34.48	2.85
200	201	1.813337	GCTCGAAGCCTGGAAGAGC	60.813	63.158	14.06	14.06	45.74	4.09
201	202	1.896694	CTCGAAGCCTGGAAGAGCT	59.103	57.895	0.00	0.00	41.27	4.09
202	203	0.179113	CTCGAAGCCTGGAAGAGCTC	60.179	60.000	5.27	5.27	39.12	4.09
203	204	0.613292	TCGAAGCCTGGAAGAGCTCT	60.613	55.000	11.45	11.45	39.12	4.09
204	205	0.459934	CGAAGCCTGGAAGAGCTCTG	60.460	60.000	19.06	5.21	39.12	3.35
205	206	0.744057	GAAGCCTGGAAGAGCTCTGC	60.744	60.000	19.06	16.45	39.12	4.26
206	207	2.511145	GCCTGGAAGAGCTCTGCG	60.511	66.667	19.06	3.63	34.07	5.18
207	208	2.186384	CCTGGAAGAGCTCTGCGG	59.814	66.667	19.06	9.27	34.07	5.69
208	209	2.511145	CTGGAAGAGCTCTGCGGC	60.511	66.667	19.06	3.78	34.07	6.53
209	210	4.441695	TGGAAGAGCTCTGCGGCG	62.442	66.667	19.06	0.51	37.29	6.46
230	231	2.439156	GCTAGGGCTGCCAAGGTG	60.439	66.667	22.05	6.53	35.22	4.00
231	232	2.439156	CTAGGGCTGCCAAGGTGC	60.439	66.667	22.05	1.14	0.00	5.01
232	233	2.935481	TAGGGCTGCCAAGGTGCT	60.935	61.111	22.05	9.52	0.00	4.40
233	234	3.272364	TAGGGCTGCCAAGGTGCTG	62.272	63.158	22.05	0.00	0.00	4.41
235	236	4.666253	GGCTGCCAAGGTGCTGGA	62.666	66.667	15.17	0.00	38.96	3.86
236	237	3.060615	GCTGCCAAGGTGCTGGAG	61.061	66.667	0.00	0.00	38.96	3.86
237	238	2.433446	CTGCCAAGGTGCTGGAGT	59.567	61.111	0.00	0.00	38.96	3.85
238	239	1.228367	CTGCCAAGGTGCTGGAGTT	60.228	57.895	0.00	0.00	38.96	3.01
239	240	1.228245	TGCCAAGGTGCTGGAGTTC	60.228	57.895	0.00	0.00	38.96	3.01
240	241	2.328099	GCCAAGGTGCTGGAGTTCG	61.328	63.158	0.00	0.00	38.96	3.95
241	242	1.071471	CCAAGGTGCTGGAGTTCGT	59.929	57.895	0.00	0.00	38.96	3.85
242	243	0.951040	CCAAGGTGCTGGAGTTCGTC	60.951	60.000	0.00	0.00	38.96	4.20
243	244	0.249868	CAAGGTGCTGGAGTTCGTCA	60.250	55.000	0.00	0.00	0.00	4.35
244	245	0.468226	AAGGTGCTGGAGTTCGTCAA	59.532	50.000	0.00	0.00	0.00	3.18
245	246	0.034059	AGGTGCTGGAGTTCGTCAAG	59.966	55.000	0.00	0.00	0.00	3.02
246	247	0.951040	GGTGCTGGAGTTCGTCAAGG	60.951	60.000	0.00	0.00	0.00	3.61
247	248	1.301716	TGCTGGAGTTCGTCAAGGC	60.302	57.895	0.00	0.00	0.00	4.35
248	249	2.035442	GCTGGAGTTCGTCAAGGCC	61.035	63.158	0.00	0.00	0.00	5.19
249	250	1.674057	CTGGAGTTCGTCAAGGCCT	59.326	57.895	0.00	0.00	0.00	5.19
250	251	0.671781	CTGGAGTTCGTCAAGGCCTG	60.672	60.000	5.69	0.00	0.00	4.85
251	252	1.376037	GGAGTTCGTCAAGGCCTGG	60.376	63.158	5.69	1.80	0.00	4.45
252	253	1.371558	GAGTTCGTCAAGGCCTGGT	59.628	57.895	5.69	0.00	0.00	4.00
253	254	0.606604	GAGTTCGTCAAGGCCTGGTA	59.393	55.000	5.69	0.00	0.00	3.25
254	255	0.320697	AGTTCGTCAAGGCCTGGTAC	59.679	55.000	5.69	3.89	0.00	3.34
255	256	0.320697	GTTCGTCAAGGCCTGGTACT	59.679	55.000	5.69	0.00	0.00	2.73
256	257	0.606604	TTCGTCAAGGCCTGGTACTC	59.393	55.000	5.69	0.00	0.00	2.59
257	258	1.218316	CGTCAAGGCCTGGTACTCC	59.782	63.158	5.69	0.00	0.00	3.85
258	259	1.218316	GTCAAGGCCTGGTACTCCG	59.782	63.158	5.69	0.00	36.30	4.63
259	260	1.987855	TCAAGGCCTGGTACTCCGG	60.988	63.158	5.69	0.00	39.70	5.14
260	261	3.400054	AAGGCCTGGTACTCCGGC	61.400	66.667	5.69	10.75	45.56	6.13
263	264	4.814294	GCCTGGTACTCCGGCGTG	62.814	72.222	7.50	0.14	40.98	5.34
264	265	4.814294	CCTGGTACTCCGGCGTGC	62.814	72.222	7.50	5.58	38.71	5.34
268	269	4.112341	GTACTCCGGCGTGCGTCT	62.112	66.667	7.50	0.00	0.00	4.18
269	270	4.111016	TACTCCGGCGTGCGTCTG	62.111	66.667	7.50	0.00	0.00	3.51
286	287	2.594592	GGCACAGTTGGCGACCTT	60.595	61.111	0.00	0.00	38.75	3.50
287	288	2.617274	GGCACAGTTGGCGACCTTC	61.617	63.158	0.00	0.00	38.75	3.46
288	289	2.617274	GCACAGTTGGCGACCTTCC	61.617	63.158	0.00	0.00	0.00	3.46
289	290	2.030562	ACAGTTGGCGACCTTCCG	59.969	61.111	0.00	0.00	0.00	4.30
290	291	2.030562	CAGTTGGCGACCTTCCGT	59.969	61.111	0.00	0.00	0.00	4.69
291	292	2.027625	CAGTTGGCGACCTTCCGTC	61.028	63.158	0.00	0.00	38.21	4.79
292	293	2.029964	GTTGGCGACCTTCCGTCA	59.970	61.111	0.00	0.00	42.83	4.35
293	294	2.027625	GTTGGCGACCTTCCGTCAG	61.028	63.158	0.00	0.00	45.25	3.51
294	295	3.234630	TTGGCGACCTTCCGTCAGG	62.235	63.158	0.00	0.00	45.25	3.86
295	296	3.379445	GGCGACCTTCCGTCAGGA	61.379	66.667	4.16	0.00	46.75	3.86
340	341	2.355126	CGAGGACATCGCCATCCG	60.355	66.667	0.00	0.00	45.98	4.18
365	366	4.908877	GCTCTCGCCGACTACGCC	62.909	72.222	0.00	0.00	38.29	5.68
366	367	4.592936	CTCTCGCCGACTACGCCG	62.593	72.222	0.00	0.00	41.58	6.46
368	369	4.883300	CTCGCCGACTACGCCGAC	62.883	72.222	0.00	0.00	43.80	4.79
385	386	3.984241	CGTCGGCGTCTTCATCTC	58.016	61.111	6.85	0.00	0.00	2.75
386	387	1.934956	CGTCGGCGTCTTCATCTCG	60.935	63.158	6.85	0.00	0.00	4.04
387	388	1.586564	GTCGGCGTCTTCATCTCGG	60.587	63.158	6.85	0.00	0.00	4.63
388	389	1.747745	TCGGCGTCTTCATCTCGGA	60.748	57.895	6.85	0.00	0.00	4.55
389	390	1.298713	CGGCGTCTTCATCTCGGAG	60.299	63.158	0.00	0.00	0.00	4.63
390	391	1.590259	GGCGTCTTCATCTCGGAGC	60.590	63.158	0.00	0.00	0.00	4.70
391	392	1.941734	GCGTCTTCATCTCGGAGCG	60.942	63.158	0.00	0.00	0.00	5.03
392	393	1.298713	CGTCTTCATCTCGGAGCGG	60.299	63.158	0.00	0.00	0.00	5.52
393	394	1.066587	GTCTTCATCTCGGAGCGGG	59.933	63.158	0.00	0.00	0.00	6.13
394	395	2.127869	TCTTCATCTCGGAGCGGGG	61.128	63.158	0.00	0.00	0.00	5.73
395	396	2.043349	TTCATCTCGGAGCGGGGA	60.043	61.111	0.00	0.00	0.00	4.81
396	397	2.081425	CTTCATCTCGGAGCGGGGAG	62.081	65.000	0.00	0.00	0.00	4.30
397	398	2.519541	CATCTCGGAGCGGGGAGA	60.520	66.667	0.00	6.19	42.96	3.71
398	399	2.519780	ATCTCGGAGCGGGGAGAC	60.520	66.667	0.00	0.00	41.71	3.36
421	422	2.433491	CGCCGACCACAATCCGAA	60.433	61.111	0.00	0.00	0.00	4.30
422	423	2.736682	CGCCGACCACAATCCGAAC	61.737	63.158	0.00	0.00	0.00	3.95
423	424	1.669760	GCCGACCACAATCCGAACA	60.670	57.895	0.00	0.00	0.00	3.18
424	425	1.908066	GCCGACCACAATCCGAACAC	61.908	60.000	0.00	0.00	0.00	3.32
425	426	1.623081	CCGACCACAATCCGAACACG	61.623	60.000	0.00	0.00	0.00	4.49
426	427	1.495951	GACCACAATCCGAACACGC	59.504	57.895	0.00	0.00	0.00	5.34
427	428	1.908066	GACCACAATCCGAACACGCC	61.908	60.000	0.00	0.00	0.00	5.68
428	429	1.963855	CCACAATCCGAACACGCCA	60.964	57.895	0.00	0.00	0.00	5.69
429	430	1.206578	CACAATCCGAACACGCCAC	59.793	57.895	0.00	0.00	0.00	5.01
430	431	1.964373	ACAATCCGAACACGCCACC	60.964	57.895	0.00	0.00	0.00	4.61
431	432	1.671054	CAATCCGAACACGCCACCT	60.671	57.895	0.00	0.00	0.00	4.00
432	433	1.375523	AATCCGAACACGCCACCTC	60.376	57.895	0.00	0.00	0.00	3.85
433	434	1.827399	AATCCGAACACGCCACCTCT	61.827	55.000	0.00	0.00	0.00	3.69
434	435	0.968901	ATCCGAACACGCCACCTCTA	60.969	55.000	0.00	0.00	0.00	2.43
435	436	1.153823	CCGAACACGCCACCTCTAG	60.154	63.158	0.00	0.00	0.00	2.43
436	437	1.585006	CGAACACGCCACCTCTAGT	59.415	57.895	0.00	0.00	0.00	2.57
437	438	0.806868	CGAACACGCCACCTCTAGTA	59.193	55.000	0.00	0.00	0.00	1.82
438	439	1.404391	CGAACACGCCACCTCTAGTAT	59.596	52.381	0.00	0.00	0.00	2.12
439	440	2.159282	CGAACACGCCACCTCTAGTATT	60.159	50.000	0.00	0.00	0.00	1.89
440	441	3.675228	CGAACACGCCACCTCTAGTATTT	60.675	47.826	0.00	0.00	0.00	1.40
441	442	3.975168	ACACGCCACCTCTAGTATTTT	57.025	42.857	0.00	0.00	0.00	1.82
442	443	3.858247	ACACGCCACCTCTAGTATTTTC	58.142	45.455	0.00	0.00	0.00	2.29
443	444	2.858344	CACGCCACCTCTAGTATTTTCG	59.142	50.000	0.00	0.00	0.00	3.46
444	445	2.494870	ACGCCACCTCTAGTATTTTCGT	59.505	45.455	0.00	0.00	0.00	3.85
445	446	3.114065	CGCCACCTCTAGTATTTTCGTC	58.886	50.000	0.00	0.00	0.00	4.20
446	447	3.455327	GCCACCTCTAGTATTTTCGTCC	58.545	50.000	0.00	0.00	0.00	4.79
447	448	3.118884	GCCACCTCTAGTATTTTCGTCCA	60.119	47.826	0.00	0.00	0.00	4.02
448	449	4.430908	CCACCTCTAGTATTTTCGTCCAC	58.569	47.826	0.00	0.00	0.00	4.02
449	450	4.103357	CACCTCTAGTATTTTCGTCCACG	58.897	47.826	0.00	0.00	41.45	4.94
458	459	3.225798	TCGTCCACGAAACCGGGT	61.226	61.111	6.32	0.00	46.30	5.28
459	460	2.280321	CGTCCACGAAACCGGGTT	60.280	61.111	3.10	3.10	43.02	4.11
460	461	2.600475	CGTCCACGAAACCGGGTTG	61.600	63.158	11.03	4.55	43.02	3.77
461	462	2.111460	TCCACGAAACCGGGTTGG	59.889	61.111	11.03	12.35	46.41	3.77
462	463	3.666253	CCACGAAACCGGGTTGGC	61.666	66.667	11.03	8.01	43.94	4.52
463	464	2.902846	CACGAAACCGGGTTGGCA	60.903	61.111	11.03	0.00	43.94	4.92
464	465	2.124236	ACGAAACCGGGTTGGCAA	60.124	55.556	11.03	0.00	43.94	4.52
465	466	1.753463	ACGAAACCGGGTTGGCAAA	60.753	52.632	11.03	0.00	43.94	3.68
466	467	1.110518	ACGAAACCGGGTTGGCAAAT	61.111	50.000	11.03	0.00	43.94	2.32
467	468	0.665972	CGAAACCGGGTTGGCAAATG	60.666	55.000	11.03	0.00	43.94	2.32
468	469	0.948623	GAAACCGGGTTGGCAAATGC	60.949	55.000	11.03	0.00	43.94	3.56
469	470	1.406860	AAACCGGGTTGGCAAATGCT	61.407	50.000	14.22	0.00	43.94	3.79
470	471	1.406860	AACCGGGTTGGCAAATGCTT	61.407	50.000	12.53	0.00	43.94	3.91
471	472	1.370810	CCGGGTTGGCAAATGCTTT	59.629	52.632	0.00	0.00	41.70	3.51
472	473	0.250252	CCGGGTTGGCAAATGCTTTT	60.250	50.000	0.00	0.00	41.70	2.27
473	474	0.867086	CGGGTTGGCAAATGCTTTTG	59.133	50.000	18.17	18.17	44.18	2.44
474	475	1.539929	CGGGTTGGCAAATGCTTTTGA	60.540	47.619	24.70	5.92	44.11	2.69
475	476	2.570135	GGGTTGGCAAATGCTTTTGAA	58.430	42.857	24.70	11.04	44.11	2.69
476	477	2.549329	GGGTTGGCAAATGCTTTTGAAG	59.451	45.455	24.70	3.38	44.11	3.02
477	478	3.465871	GGTTGGCAAATGCTTTTGAAGA	58.534	40.909	24.70	9.16	44.11	2.87
478	479	4.067192	GGTTGGCAAATGCTTTTGAAGAT	58.933	39.130	24.70	0.00	44.11	2.40
479	480	5.237048	GGTTGGCAAATGCTTTTGAAGATA	58.763	37.500	24.70	6.26	44.11	1.98
480	481	5.120674	GGTTGGCAAATGCTTTTGAAGATAC	59.879	40.000	24.70	14.62	44.11	2.24
481	482	4.484236	TGGCAAATGCTTTTGAAGATACG	58.516	39.130	24.70	0.78	44.11	3.06
482	483	4.217334	TGGCAAATGCTTTTGAAGATACGA	59.783	37.500	24.70	4.51	44.11	3.43
483	484	5.160641	GGCAAATGCTTTTGAAGATACGAA	58.839	37.500	24.70	0.00	44.11	3.85
484	485	5.633182	GGCAAATGCTTTTGAAGATACGAAA	59.367	36.000	24.70	0.00	44.11	3.46
485	486	6.399986	GGCAAATGCTTTTGAAGATACGAAAC	60.400	38.462	24.70	5.98	44.11	2.78
486	487	6.399986	GCAAATGCTTTTGAAGATACGAAACC	60.400	38.462	24.70	2.88	44.11	3.27
487	488	5.957842	ATGCTTTTGAAGATACGAAACCA	57.042	34.783	0.00	0.00	0.00	3.67
488	489	5.759506	TGCTTTTGAAGATACGAAACCAA	57.240	34.783	0.00	0.00	0.00	3.67
489	490	6.325919	TGCTTTTGAAGATACGAAACCAAT	57.674	33.333	0.00	0.00	0.00	3.16
490	491	6.744112	TGCTTTTGAAGATACGAAACCAATT	58.256	32.000	0.00	0.00	0.00	2.32
491	492	6.861055	TGCTTTTGAAGATACGAAACCAATTC	59.139	34.615	0.00	0.00	34.52	2.17
492	493	6.861055	GCTTTTGAAGATACGAAACCAATTCA	59.139	34.615	0.00	0.00	37.96	2.57
493	494	7.542130	GCTTTTGAAGATACGAAACCAATTCAT	59.458	33.333	0.00	0.00	37.96	2.57
504	505	8.561738	ACGAAACCAATTCATATTACTTGTCT	57.438	30.769	0.00	0.00	37.96	3.41
505	506	9.010029	ACGAAACCAATTCATATTACTTGTCTT	57.990	29.630	0.00	0.00	37.96	3.01
516	517	9.197306	TCATATTACTTGTCTTAGTAGCCTTCA	57.803	33.333	0.00	0.00	32.54	3.02
517	518	9.469807	CATATTACTTGTCTTAGTAGCCTTCAG	57.530	37.037	0.00	0.00	32.54	3.02
518	519	4.810191	ACTTGTCTTAGTAGCCTTCAGG	57.190	45.455	0.00	0.00	38.53	3.86
519	520	4.417437	ACTTGTCTTAGTAGCCTTCAGGA	58.583	43.478	0.00	0.00	37.39	3.86
520	521	5.026790	ACTTGTCTTAGTAGCCTTCAGGAT	58.973	41.667	0.00	0.00	37.39	3.24
521	522	5.128008	ACTTGTCTTAGTAGCCTTCAGGATC	59.872	44.000	0.00	0.00	37.39	3.36
522	523	3.961408	TGTCTTAGTAGCCTTCAGGATCC	59.039	47.826	2.48	2.48	37.39	3.36
523	524	4.219919	GTCTTAGTAGCCTTCAGGATCCT	58.780	47.826	9.02	9.02	37.39	3.24
524	525	4.038642	GTCTTAGTAGCCTTCAGGATCCTG	59.961	50.000	32.60	32.60	44.86	3.86
540	541	9.425248	TCAGGATCCTGATAAATGCTTTAATTT	57.575	29.630	35.92	0.00	46.80	1.82
555	556	8.986477	TGCTTTAATTTTCAAAGATAGAAGCC	57.014	30.769	3.81	0.00	35.43	4.35
556	557	8.584157	TGCTTTAATTTTCAAAGATAGAAGCCA	58.416	29.630	3.81	0.00	35.43	4.75
557	558	9.591792	GCTTTAATTTTCAAAGATAGAAGCCAT	57.408	29.630	3.81	0.00	35.43	4.40
564	565	9.857656	TTTTCAAAGATAGAAGCCATATCATCT	57.142	29.630	3.96	0.00	32.98	2.90
565	566	9.499479	TTTCAAAGATAGAAGCCATATCATCTC	57.501	33.333	3.96	0.00	32.98	2.75
566	567	8.198807	TCAAAGATAGAAGCCATATCATCTCA	57.801	34.615	3.96	0.00	32.98	3.27
567	568	8.093307	TCAAAGATAGAAGCCATATCATCTCAC	58.907	37.037	3.96	0.00	32.98	3.51
568	569	7.795534	AAGATAGAAGCCATATCATCTCACT	57.204	36.000	3.96	0.00	32.98	3.41
569	570	7.795534	AGATAGAAGCCATATCATCTCACTT	57.204	36.000	3.96	0.00	32.98	3.16
570	571	7.839907	AGATAGAAGCCATATCATCTCACTTC	58.160	38.462	0.00	0.00	32.98	3.01
571	572	5.883685	AGAAGCCATATCATCTCACTTCA	57.116	39.130	0.00	0.00	35.61	3.02
572	573	6.244552	AGAAGCCATATCATCTCACTTCAA	57.755	37.500	0.00	0.00	35.61	2.69
573	574	6.656902	AGAAGCCATATCATCTCACTTCAAA	58.343	36.000	0.00	0.00	35.61	2.69
574	575	6.541641	AGAAGCCATATCATCTCACTTCAAAC	59.458	38.462	0.00	0.00	35.61	2.93
575	576	5.748402	AGCCATATCATCTCACTTCAAACA	58.252	37.500	0.00	0.00	0.00	2.83
576	577	6.363065	AGCCATATCATCTCACTTCAAACAT	58.637	36.000	0.00	0.00	0.00	2.71
577	578	6.832384	AGCCATATCATCTCACTTCAAACATT	59.168	34.615	0.00	0.00	0.00	2.71
578	579	7.994911	AGCCATATCATCTCACTTCAAACATTA	59.005	33.333	0.00	0.00	0.00	1.90
579	580	8.623903	GCCATATCATCTCACTTCAAACATTAA	58.376	33.333	0.00	0.00	0.00	1.40
597	598	9.898152	AAACATTAAAAATTCTTTTCTCCCACA	57.102	25.926	0.00	0.00	36.20	4.17
598	599	9.898152	AACATTAAAAATTCTTTTCTCCCACAA	57.102	25.926	0.00	0.00	36.20	3.33
599	600	9.325198	ACATTAAAAATTCTTTTCTCCCACAAC	57.675	29.630	0.00	0.00	36.20	3.32
600	601	9.546428	CATTAAAAATTCTTTTCTCCCACAACT	57.454	29.630	0.00	0.00	36.20	3.16
601	602	8.940768	TTAAAAATTCTTTTCTCCCACAACTG	57.059	30.769	0.00	0.00	36.20	3.16
602	603	6.790232	AAAATTCTTTTCTCCCACAACTGA	57.210	33.333	0.00	0.00	0.00	3.41
603	604	6.983906	AAATTCTTTTCTCCCACAACTGAT	57.016	33.333	0.00	0.00	0.00	2.90
604	605	5.972107	ATTCTTTTCTCCCACAACTGATG	57.028	39.130	0.00	0.00	0.00	3.07
605	606	3.149196	TCTTTTCTCCCACAACTGATGC	58.851	45.455	0.00	0.00	0.00	3.91
606	607	2.655090	TTTCTCCCACAACTGATGCA	57.345	45.000	0.00	0.00	0.00	3.96
607	608	2.655090	TTCTCCCACAACTGATGCAA	57.345	45.000	0.00	0.00	0.00	4.08
608	609	2.189594	TCTCCCACAACTGATGCAAG	57.810	50.000	0.00	0.00	0.00	4.01
609	610	1.699083	TCTCCCACAACTGATGCAAGA	59.301	47.619	0.00	0.00	0.00	3.02
610	611	2.106338	TCTCCCACAACTGATGCAAGAA	59.894	45.455	0.00	0.00	0.00	2.52
611	612	2.886523	CTCCCACAACTGATGCAAGAAA	59.113	45.455	0.00	0.00	0.00	2.52
612	613	3.295093	TCCCACAACTGATGCAAGAAAA	58.705	40.909	0.00	0.00	0.00	2.29
613	614	3.896888	TCCCACAACTGATGCAAGAAAAT	59.103	39.130	0.00	0.00	0.00	1.82
614	615	3.991773	CCCACAACTGATGCAAGAAAATG	59.008	43.478	0.00	0.00	0.00	2.32
615	616	4.501915	CCCACAACTGATGCAAGAAAATGT	60.502	41.667	0.00	0.00	0.00	2.71
616	617	5.051816	CCACAACTGATGCAAGAAAATGTT	58.948	37.500	0.00	0.00	0.00	2.71
617	618	6.215121	CCACAACTGATGCAAGAAAATGTTA	58.785	36.000	0.00	0.00	0.00	2.41
618	619	6.364165	CCACAACTGATGCAAGAAAATGTTAG	59.636	38.462	0.00	0.00	0.00	2.34
619	620	7.140705	CACAACTGATGCAAGAAAATGTTAGA	58.859	34.615	0.00	0.00	0.00	2.10
620	621	7.648908	CACAACTGATGCAAGAAAATGTTAGAA	59.351	33.333	0.00	0.00	0.00	2.10
621	622	8.362639	ACAACTGATGCAAGAAAATGTTAGAAT	58.637	29.630	0.00	0.00	0.00	2.40
622	623	8.644619	CAACTGATGCAAGAAAATGTTAGAATG	58.355	33.333	0.00	0.00	0.00	2.67
623	624	8.114331	ACTGATGCAAGAAAATGTTAGAATGA	57.886	30.769	0.00	0.00	0.00	2.57
628	629	9.768662	ATGCAAGAAAATGTTAGAATGACTTTT	57.231	25.926	0.00	0.00	0.00	2.27
637	638	9.753674	AATGTTAGAATGACTTTTAGGAATGGA	57.246	29.630	0.00	0.00	0.00	3.41
639	640	9.231297	TGTTAGAATGACTTTTAGGAATGGAAG	57.769	33.333	0.00	0.00	0.00	3.46
640	641	6.765915	AGAATGACTTTTAGGAATGGAAGC	57.234	37.500	0.00	0.00	0.00	3.86
648	649	2.322355	AGGAATGGAAGCTGTCGATG	57.678	50.000	0.00	0.00	0.00	3.84
653	654	0.178767	TGGAAGCTGTCGATGGATGG	59.821	55.000	0.00	0.00	0.00	3.51
662	663	4.631131	CTGTCGATGGATGGTTAGCAATA	58.369	43.478	0.00	0.00	0.00	1.90
669	670	2.542595	GGATGGTTAGCAATAACGACCG	59.457	50.000	0.00	0.00	33.07	4.79
675	676	4.500375	GGTTAGCAATAACGACCGGATAGT	60.500	45.833	9.46	1.10	0.00	2.12
683	684	7.201548	GCAATAACGACCGGATAGTTCTTTTTA	60.202	37.037	9.46	0.00	0.00	1.52
726	727	8.027440	GCTTTATCTATAAAGTCAGGCTCATG	57.973	38.462	18.85	0.00	46.78	3.07
727	728	7.659390	GCTTTATCTATAAAGTCAGGCTCATGT	59.341	37.037	18.85	0.00	46.78	3.21
733	734	8.103305	TCTATAAAGTCAGGCTCATGTCTTTTT	58.897	33.333	10.73	7.07	38.73	1.94
734	735	9.383519	CTATAAAGTCAGGCTCATGTCTTTTTA	57.616	33.333	10.73	7.65	38.73	1.52
737	738	7.530426	AAGTCAGGCTCATGTCTTTTTATTT	57.470	32.000	0.00	0.00	0.00	1.40
738	739	7.530426	AGTCAGGCTCATGTCTTTTTATTTT	57.470	32.000	0.00	0.00	0.00	1.82
740	741	9.247861	AGTCAGGCTCATGTCTTTTTATTTTAT	57.752	29.630	0.00	0.00	0.00	1.40
741	742	9.860898	GTCAGGCTCATGTCTTTTTATTTTATT	57.139	29.630	0.00	0.00	0.00	1.40
776	799	9.775539	ATATACTAGTTGATACCCATCTGATGT	57.224	33.333	15.95	1.75	31.93	3.06
777	800	6.166984	ACTAGTTGATACCCATCTGATGTG	57.833	41.667	15.95	7.70	31.93	3.21
778	801	5.899547	ACTAGTTGATACCCATCTGATGTGA	59.100	40.000	15.95	1.89	31.93	3.58
779	802	5.901413	AGTTGATACCCATCTGATGTGAT	57.099	39.130	15.95	6.42	31.93	3.06
855	890	1.491274	CCCCCTTTTGCCATGCCTTT	61.491	55.000	0.00	0.00	0.00	3.11
872	907	3.605749	TTACTGGAGCAGGCGCCAC	62.606	63.158	31.54	20.82	40.88	5.01
926	961	5.428131	TGCCCCTAAATTTAGCAATTTGGAT	59.572	36.000	18.18	0.00	41.26	3.41
1002	1037	0.802494	GGCAAGAACCGTACACCATG	59.198	55.000	0.00	0.00	0.00	3.66
1003	1038	1.609580	GGCAAGAACCGTACACCATGA	60.610	52.381	0.00	0.00	0.00	3.07
1004	1039	1.732259	GCAAGAACCGTACACCATGAG	59.268	52.381	0.00	0.00	0.00	2.90
1005	1040	1.732259	CAAGAACCGTACACCATGAGC	59.268	52.381	0.00	0.00	0.00	4.26
1006	1041	0.249398	AGAACCGTACACCATGAGCC	59.751	55.000	0.00	0.00	0.00	4.70
1007	1042	0.036765	GAACCGTACACCATGAGCCA	60.037	55.000	0.00	0.00	0.00	4.75
1008	1043	0.321298	AACCGTACACCATGAGCCAC	60.321	55.000	0.00	0.00	0.00	5.01
1009	1044	1.295101	CCGTACACCATGAGCCACA	59.705	57.895	0.00	0.00	0.00	4.17
1010	1045	0.321210	CCGTACACCATGAGCCACAA	60.321	55.000	0.00	0.00	0.00	3.33
1011	1046	1.078709	CGTACACCATGAGCCACAAG	58.921	55.000	0.00	0.00	0.00	3.16
1012	1047	1.453155	GTACACCATGAGCCACAAGG	58.547	55.000	0.00	2.01	42.35	3.61
1013	1048	1.003118	GTACACCATGAGCCACAAGGA	59.997	52.381	9.24	0.00	39.44	3.36
1014	1049	0.250901	ACACCATGAGCCACAAGGAC	60.251	55.000	9.24	0.00	39.44	3.85
1015	1050	1.003355	ACCATGAGCCACAAGGACG	60.003	57.895	9.24	0.00	39.44	4.79
1016	1051	1.296392	CCATGAGCCACAAGGACGA	59.704	57.895	0.00	0.00	39.44	4.20
1017	1052	1.021390	CCATGAGCCACAAGGACGAC	61.021	60.000	0.00	0.00	39.44	4.34
1018	1053	1.079819	ATGAGCCACAAGGACGACG	60.080	57.895	0.00	0.00	36.89	5.12
1019	1054	2.432628	GAGCCACAAGGACGACGG	60.433	66.667	0.00	0.00	36.89	4.79
1020	1055	4.681978	AGCCACAAGGACGACGGC	62.682	66.667	0.00	0.00	43.31	5.68
1022	1057	4.351938	CCACAAGGACGACGGCGA	62.352	66.667	22.49	0.00	41.64	5.54
1023	1058	2.805353	CACAAGGACGACGGCGAG	60.805	66.667	22.49	10.00	41.64	5.03
1024	1059	4.052229	ACAAGGACGACGGCGAGG	62.052	66.667	22.49	7.21	41.64	4.63
1025	1060	4.052229	CAAGGACGACGGCGAGGT	62.052	66.667	22.49	11.03	41.64	3.85
1026	1061	4.052229	AAGGACGACGGCGAGGTG	62.052	66.667	22.49	2.01	41.64	4.00
1032	1067	4.736896	GACGGCGAGGTGGGTGTC	62.737	72.222	16.62	0.00	0.00	3.67
1035	1070	4.083862	GGCGAGGTGGGTGTCCTC	62.084	72.222	2.27	2.27	45.56	3.71
1038	1073	3.468063	GAGGTGGGTGTCCTCGTT	58.532	61.111	0.00	0.00	41.36	3.85
1039	1074	1.004918	GAGGTGGGTGTCCTCGTTG	60.005	63.158	0.00	0.00	41.36	4.10
1040	1075	1.458777	AGGTGGGTGTCCTCGTTGA	60.459	57.895	0.00	0.00	0.00	3.18
1107	1142	4.127040	CGCAGCGAGCAGGAGTCT	62.127	66.667	9.98	0.00	46.13	3.24
1129	1164	1.009078	CTTTCAATGCCTCGATCGCA	58.991	50.000	11.09	9.48	41.28	5.10
1132	1167	0.881600	TCAATGCCTCGATCGCATGG	60.882	55.000	17.88	15.59	46.09	3.66
1274	1309	1.743321	GAGCTGGACGAGGATGAGGG	61.743	65.000	0.00	0.00	0.00	4.30
1275	1310	1.758514	GCTGGACGAGGATGAGGGA	60.759	63.158	0.00	0.00	0.00	4.20
1276	1311	1.743321	GCTGGACGAGGATGAGGGAG	61.743	65.000	0.00	0.00	0.00	4.30
1398	1433	0.392729	GCCTCAACAGCAGCAGAGAT	60.393	55.000	0.00	0.00	0.00	2.75
1431	1466	1.519455	CATCGCCAGGACGAGGAAC	60.519	63.158	11.11	0.00	46.05	3.62
1432	1467	3.064987	ATCGCCAGGACGAGGAACG	62.065	63.158	10.99	0.00	46.69	3.95
1509	1544	0.033228	CCACGCCTCTCCAGATCATC	59.967	60.000	0.00	0.00	0.00	2.92
1642	1677	2.032528	CTCTGCAAGGTTCGCCCA	59.967	61.111	0.00	0.00	38.27	5.36
1660	1695	2.068821	ATGCACAGGGCTCTCCGAT	61.069	57.895	0.00	0.00	45.15	4.18
1688	1723	1.227999	CGTTGTCCGTTGCCATCAGT	61.228	55.000	0.00	0.00	0.00	3.41
1734	1769	6.779860	AGGAGAAAATAGAAACTGCAACCTA	58.220	36.000	0.00	0.00	0.00	3.08
1754	1789	0.452784	GATGACGGCAAAGTGTTCGC	60.453	55.000	0.00	0.00	0.00	4.70
1945	1980	2.783135	GGTGGCTGAAGAACATGAAGA	58.217	47.619	0.00	0.00	0.00	2.87
2004	2045	2.294078	GGACAGGGACAGGGACAGG	61.294	68.421	0.00	0.00	0.00	4.00
2005	2046	2.203998	ACAGGGACAGGGACAGGG	60.204	66.667	0.00	0.00	0.00	4.45
2006	2047	2.122729	CAGGGACAGGGACAGGGA	59.877	66.667	0.00	0.00	0.00	4.20
2007	2048	2.122954	AGGGACAGGGACAGGGAC	59.877	66.667	0.00	0.00	0.00	4.46
2008	2049	2.203938	GGGACAGGGACAGGGACA	60.204	66.667	0.00	0.00	0.00	4.02
2009	2050	2.294078	GGGACAGGGACAGGGACAG	61.294	68.421	0.00	0.00	0.00	3.51
2056	2097	1.270839	CCATGTCCAAGTCCAAGTCGT	60.271	52.381	0.00	0.00	0.00	4.34
2062	2103	0.317603	CAAGTCCAAGTCGTCGTCGT	60.318	55.000	1.33	0.00	38.33	4.34
2698	2742	0.101399	CTACTTCATCAGCGGCTCGT	59.899	55.000	0.00	0.00	0.00	4.18
2825	2873	8.122952	CCAGGTTCATTAATTCGATTCTTGTAC	58.877	37.037	0.00	0.00	0.00	2.90
2826	2874	8.883731	CAGGTTCATTAATTCGATTCTTGTACT	58.116	33.333	0.00	0.00	0.00	2.73
2827	2875	8.883731	AGGTTCATTAATTCGATTCTTGTACTG	58.116	33.333	0.00	0.00	0.00	2.74
2828	2876	8.665685	GGTTCATTAATTCGATTCTTGTACTGT	58.334	33.333	0.00	0.00	0.00	3.55
2875	2923	5.868257	TCGTCTAAAAACACATCATGCATC	58.132	37.500	0.00	0.00	0.00	3.91
2916	2964	7.851963	GCTTAATACGTGTGTTGTTCAAACTTA	59.148	33.333	0.00	0.00	32.40	2.24
3004	3055	5.867716	GGTAATCTCAATGTCAGTAACACGT	59.132	40.000	0.00	0.00	41.75	4.49
3016	3067	5.512082	GTCAGTAACACGTAATCTGTGCTAG	59.488	44.000	0.00	0.00	41.03	3.42
3170	3223	1.127567	TCCAGGTACCTGCTGCTTGT	61.128	55.000	32.98	0.00	42.35	3.16
3171	3224	0.613260	CCAGGTACCTGCTGCTTGTA	59.387	55.000	32.98	0.00	42.35	2.41
3172	3225	1.676014	CCAGGTACCTGCTGCTTGTAC	60.676	57.143	32.98	17.95	42.35	2.90
3173	3226	3.154589	GGTACCTGCTGCTTGTACC	57.845	57.895	24.79	24.79	45.41	3.34
3214	3267	0.111089	GCAAACGGATCGATCGATGC	60.111	55.000	33.86	33.04	39.19	3.91
3219	3272	2.084546	ACGGATCGATCGATGCTGATA	58.915	47.619	36.09	9.46	40.19	2.15
3220	3273	2.159503	ACGGATCGATCGATGCTGATAC	60.160	50.000	36.09	20.75	40.19	2.24
3225	3285	1.729472	CGATCGATGCTGATACCGGAC	60.729	57.143	10.26	0.00	0.00	4.79
3232	3292	2.025898	TGCTGATACCGGACGATGTTA	58.974	47.619	9.46	0.00	0.00	2.41
3236	3296	2.423185	TGATACCGGACGATGTTAACGT	59.577	45.455	9.46	0.00	46.58	3.99
3237	3297	3.625313	TGATACCGGACGATGTTAACGTA	59.375	43.478	9.46	0.00	43.97	3.57
3238	3298	4.275689	TGATACCGGACGATGTTAACGTAT	59.724	41.667	9.46	0.00	43.97	3.06
3621	3681	2.801631	GCTCACCAGCCGCTCCTAT	61.802	63.158	0.00	0.00	40.14	2.57
3756	3816	1.513158	CAGGAGAGCGTCGGACAAT	59.487	57.895	9.10	0.00	0.00	2.71
3825	3885	2.975536	CTTACGTTCCCCGGCTCA	59.024	61.111	0.00	0.00	42.24	4.26
3939	3999	3.515901	AGATGAGGGTGTACCAGAACTTC	59.484	47.826	3.11	0.28	43.89	3.01
3986	4046	5.221009	GGCAGAAGTGATGGATCTTGATTTC	60.221	44.000	0.00	0.00	0.00	2.17
3989	4049	6.018913	CAGAAGTGATGGATCTTGATTTCGAG	60.019	42.308	0.00	0.00	0.00	4.04
4017	4077	1.134438	GTTGGAAGGGAGGGAGTGGT	61.134	60.000	0.00	0.00	0.00	4.16
4064	4124	2.447250	CATGAATGCAGCAGCTTTACG	58.553	47.619	0.00	0.00	42.74	3.18
4094	4154	2.728015	CGTACGACGCACACTGCA	60.728	61.111	10.44	0.00	45.36	4.41
4095	4155	2.844146	GTACGACGCACACTGCAC	59.156	61.111	0.00	0.00	45.36	4.57
4096	4156	1.947146	GTACGACGCACACTGCACA	60.947	57.895	0.00	0.00	45.36	4.57
4097	4157	1.947146	TACGACGCACACTGCACAC	60.947	57.895	0.00	0.00	45.36	3.82
4106	4166	0.179059	ACACTGCACACAATCGGTCA	60.179	50.000	0.00	0.00	0.00	4.02
4312	4394	9.427127	GCGTGAAACAGAAGAAATATCTTAATC	57.573	33.333	0.00	0.00	41.12	1.75
4330	4412	9.976511	ATCTTAATCCAAATGCACATATCTTTG	57.023	29.630	0.00	0.00	0.00	2.77
4331	4413	8.415553	TCTTAATCCAAATGCACATATCTTTGG	58.584	33.333	17.45	17.45	45.79	3.28
4334	4416	4.365723	CCAAATGCACATATCTTTGGAGC	58.634	43.478	18.36	0.00	46.84	4.70
4335	4417	4.365723	CAAATGCACATATCTTTGGAGCC	58.634	43.478	0.00	0.00	0.00	4.70
4336	4418	2.804986	TGCACATATCTTTGGAGCCA	57.195	45.000	0.00	0.00	0.00	4.75
4337	4419	2.368439	TGCACATATCTTTGGAGCCAC	58.632	47.619	0.00	0.00	0.00	5.01
4338	4420	1.678101	GCACATATCTTTGGAGCCACC	59.322	52.381	0.00	0.00	39.54	4.61
4339	4421	1.942657	CACATATCTTTGGAGCCACCG	59.057	52.381	0.00	0.00	42.61	4.94
4340	4422	1.134098	ACATATCTTTGGAGCCACCGG	60.134	52.381	0.00	0.00	42.61	5.28
4341	4423	1.140852	CATATCTTTGGAGCCACCGGA	59.859	52.381	9.46	0.00	42.61	5.14
4342	4424	0.539986	TATCTTTGGAGCCACCGGAC	59.460	55.000	9.46	0.00	42.61	4.79
4343	4425	1.488705	ATCTTTGGAGCCACCGGACA	61.489	55.000	9.46	0.00	42.61	4.02
4344	4426	1.672356	CTTTGGAGCCACCGGACAG	60.672	63.158	9.46	0.00	42.61	3.51
4345	4427	3.842925	TTTGGAGCCACCGGACAGC	62.843	63.158	9.46	7.87	42.61	4.40
4356	4438	3.958860	GGACAGCCCAGCAGTGGT	61.959	66.667	0.00	0.00	43.23	4.16
4357	4439	2.359230	GACAGCCCAGCAGTGGTC	60.359	66.667	0.00	0.00	43.23	4.02
4358	4440	3.909086	GACAGCCCAGCAGTGGTCC	62.909	68.421	0.00	0.00	43.23	4.46
4359	4441	4.729918	CAGCCCAGCAGTGGTCCC	62.730	72.222	0.00	0.00	43.23	4.46
4526	4609	1.992277	GCCTTCCCTCTCTCCTGCA	60.992	63.158	0.00	0.00	0.00	4.41
4650	4735	2.742116	GCCTAAGGCGGATGGTGGA	61.742	63.158	0.00	0.00	39.62	4.02
4717	4807	2.047655	GGCGACGGACCATGTGAA	60.048	61.111	0.00	0.00	0.00	3.18
4726	4816	1.207089	GGACCATGTGAACTCGGATCA	59.793	52.381	0.00	0.00	0.00	2.92
4953	5043	3.304391	GCGGCACTCTTTTGTGTCATTAA	60.304	43.478	0.00	0.00	42.13	1.40
4954	5044	4.791411	GCGGCACTCTTTTGTGTCATTAAA	60.791	41.667	0.00	0.00	42.13	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.579738	GAAGGTCTGAGGCCGGTC	59.420	66.667	0.00	0.00	0.00	4.79
1	2	3.382832	CGAAGGTCTGAGGCCGGT	61.383	66.667	1.90	0.00	0.00	5.28
14	15	1.699656	CCATGAGCTGTTCGCCGAAG	61.700	60.000	0.00	0.00	40.39	3.79
15	16	1.741401	CCATGAGCTGTTCGCCGAA	60.741	57.895	0.00	0.00	40.39	4.30
16	17	2.125552	CCATGAGCTGTTCGCCGA	60.126	61.111	0.00	0.00	40.39	5.54
17	18	3.869272	GCCATGAGCTGTTCGCCG	61.869	66.667	0.00	0.00	40.39	6.46
26	27	1.445716	GCATCCAGACAGCCATGAGC	61.446	60.000	0.00	0.00	44.25	4.26
27	28	1.158484	CGCATCCAGACAGCCATGAG	61.158	60.000	0.00	0.00	0.00	2.90
28	29	1.153309	CGCATCCAGACAGCCATGA	60.153	57.895	0.00	0.00	0.00	3.07
29	30	2.831366	GCGCATCCAGACAGCCATG	61.831	63.158	0.30	0.00	0.00	3.66
30	31	2.515523	GCGCATCCAGACAGCCAT	60.516	61.111	0.30	0.00	0.00	4.40
31	32	4.783621	GGCGCATCCAGACAGCCA	62.784	66.667	10.83	0.00	46.48	4.75
33	34	2.894387	GAGGCGCATCCAGACAGC	60.894	66.667	11.78	0.00	37.29	4.40
34	35	2.584418	CGAGGCGCATCCAGACAG	60.584	66.667	17.46	0.00	37.29	3.51
35	36	3.068064	TCGAGGCGCATCCAGACA	61.068	61.111	17.46	0.00	37.29	3.41
36	37	2.279120	CTCGAGGCGCATCCAGAC	60.279	66.667	17.46	0.00	37.29	3.51
37	38	4.212913	GCTCGAGGCGCATCCAGA	62.213	66.667	20.74	10.03	37.29	3.86
40	41	4.838152	TTGGCTCGAGGCGCATCC	62.838	66.667	30.84	15.11	44.42	3.51
41	42	2.590007	ATTGGCTCGAGGCGCATC	60.590	61.111	30.84	12.96	44.42	3.91
42	43	2.898840	CATTGGCTCGAGGCGCAT	60.899	61.111	30.84	22.80	44.42	4.73
77	78	3.482783	GACTCGGTGCGCTGAAGC	61.483	66.667	9.73	1.20	37.78	3.86
78	79	3.175240	CGACTCGGTGCGCTGAAG	61.175	66.667	9.73	7.07	0.00	3.02
85	86	3.575351	AAGACCTGCGACTCGGTGC	62.575	63.158	0.00	0.00	32.62	5.01
86	87	1.734477	CAAGACCTGCGACTCGGTG	60.734	63.158	0.00	0.00	32.62	4.94
87	88	2.651361	CAAGACCTGCGACTCGGT	59.349	61.111	0.00	0.00	35.90	4.69
88	89	2.125912	CCAAGACCTGCGACTCGG	60.126	66.667	0.00	0.00	0.00	4.63
89	90	1.153939	CTCCAAGACCTGCGACTCG	60.154	63.158	0.00	0.00	0.00	4.18
90	91	1.216710	CCTCCAAGACCTGCGACTC	59.783	63.158	0.00	0.00	0.00	3.36
91	92	2.286523	CCCTCCAAGACCTGCGACT	61.287	63.158	0.00	0.00	0.00	4.18
92	93	2.266055	CCCTCCAAGACCTGCGAC	59.734	66.667	0.00	0.00	0.00	5.19
93	94	3.706373	GCCCTCCAAGACCTGCGA	61.706	66.667	0.00	0.00	0.00	5.10
94	95	3.259633	AAGCCCTCCAAGACCTGCG	62.260	63.158	0.00	0.00	0.00	5.18
95	96	1.676967	CAAGCCCTCCAAGACCTGC	60.677	63.158	0.00	0.00	0.00	4.85
96	97	0.607489	CACAAGCCCTCCAAGACCTG	60.607	60.000	0.00	0.00	0.00	4.00
97	98	1.763770	CACAAGCCCTCCAAGACCT	59.236	57.895	0.00	0.00	0.00	3.85
98	99	1.303643	CCACAAGCCCTCCAAGACC	60.304	63.158	0.00	0.00	0.00	3.85
99	100	1.973812	GCCACAAGCCCTCCAAGAC	60.974	63.158	0.00	0.00	34.35	3.01
100	101	2.436109	GCCACAAGCCCTCCAAGA	59.564	61.111	0.00	0.00	34.35	3.02
110	111	4.263572	TGACCACCCGGCCACAAG	62.264	66.667	2.24	0.00	34.57	3.16
111	112	4.263572	CTGACCACCCGGCCACAA	62.264	66.667	2.24	0.00	34.57	3.33
113	114	3.682292	GATCTGACCACCCGGCCAC	62.682	68.421	2.24	0.00	34.57	5.01
114	115	3.399181	GATCTGACCACCCGGCCA	61.399	66.667	2.24	0.00	34.57	5.36
115	116	4.176752	GGATCTGACCACCCGGCC	62.177	72.222	0.00	0.00	34.57	6.13
116	117	4.176752	GGGATCTGACCACCCGGC	62.177	72.222	0.00	0.00	34.03	6.13
119	120	4.530857	CGCGGGATCTGACCACCC	62.531	72.222	0.00	0.00	40.17	4.61
120	121	4.530857	CCGCGGGATCTGACCACC	62.531	72.222	20.10	0.00	0.00	4.61
121	122	3.458163	TCCGCGGGATCTGACCAC	61.458	66.667	27.83	0.00	0.00	4.16
122	123	3.458163	GTCCGCGGGATCTGACCA	61.458	66.667	27.83	0.00	32.73	4.02
123	124	3.140225	GAGTCCGCGGGATCTGACC	62.140	68.421	27.83	5.28	32.73	4.02
124	125	2.413765	GAGTCCGCGGGATCTGAC	59.586	66.667	27.83	15.24	32.73	3.51
125	126	2.833582	GGAGTCCGCGGGATCTGA	60.834	66.667	27.83	0.17	32.73	3.27
126	127	3.917760	GGGAGTCCGCGGGATCTG	61.918	72.222	27.83	0.00	32.73	2.90
127	128	4.458829	TGGGAGTCCGCGGGATCT	62.459	66.667	27.83	20.67	32.73	2.75
128	129	3.917760	CTGGGAGTCCGCGGGATC	61.918	72.222	27.83	22.45	32.73	3.36
129	130	4.779733	ACTGGGAGTCCGCGGGAT	62.780	66.667	27.83	14.75	36.07	3.85
154	155	2.046892	CCACCTTCAGCCAGTCGG	60.047	66.667	0.00	0.00	0.00	4.79
155	156	2.743928	GCCACCTTCAGCCAGTCG	60.744	66.667	0.00	0.00	0.00	4.18
156	157	2.743928	CGCCACCTTCAGCCAGTC	60.744	66.667	0.00	0.00	0.00	3.51
157	158	4.335647	CCGCCACCTTCAGCCAGT	62.336	66.667	0.00	0.00	0.00	4.00
162	163	3.423154	GTTCGCCGCCACCTTCAG	61.423	66.667	0.00	0.00	0.00	3.02
182	183	1.813337	GCTCTTCCAGGCTTCGAGC	60.813	63.158	7.91	7.91	41.46	5.03
183	184	0.179113	GAGCTCTTCCAGGCTTCGAG	60.179	60.000	6.43	0.00	39.05	4.04
184	185	0.613292	AGAGCTCTTCCAGGCTTCGA	60.613	55.000	11.45	0.00	39.05	3.71
185	186	0.459934	CAGAGCTCTTCCAGGCTTCG	60.460	60.000	15.27	0.00	39.05	3.79
186	187	0.744057	GCAGAGCTCTTCCAGGCTTC	60.744	60.000	15.27	0.00	39.05	3.86
187	188	1.299321	GCAGAGCTCTTCCAGGCTT	59.701	57.895	15.27	0.00	39.05	4.35
188	189	2.988800	GCAGAGCTCTTCCAGGCT	59.011	61.111	15.27	0.00	41.88	4.58
189	190	2.511145	CGCAGAGCTCTTCCAGGC	60.511	66.667	15.27	13.24	0.00	4.85
190	191	2.186384	CCGCAGAGCTCTTCCAGG	59.814	66.667	15.27	11.10	0.00	4.45
191	192	2.511145	GCCGCAGAGCTCTTCCAG	60.511	66.667	15.27	3.66	0.00	3.86
192	193	4.441695	CGCCGCAGAGCTCTTCCA	62.442	66.667	15.27	0.00	0.00	3.53
213	214	2.439156	CACCTTGGCAGCCCTAGC	60.439	66.667	9.64	0.00	40.32	3.42
214	215	2.439156	GCACCTTGGCAGCCCTAG	60.439	66.667	9.64	6.32	34.26	3.02
215	216	2.935481	AGCACCTTGGCAGCCCTA	60.935	61.111	9.64	0.00	35.83	3.53
216	217	4.673375	CAGCACCTTGGCAGCCCT	62.673	66.667	9.64	0.00	35.83	5.19
218	219	4.666253	TCCAGCACCTTGGCAGCC	62.666	66.667	3.66	3.66	38.16	4.85
219	220	3.060615	CTCCAGCACCTTGGCAGC	61.061	66.667	0.00	0.00	38.16	5.25
220	221	1.228367	AACTCCAGCACCTTGGCAG	60.228	57.895	0.00	0.00	38.16	4.85
221	222	1.228245	GAACTCCAGCACCTTGGCA	60.228	57.895	0.00	0.00	38.16	4.92
222	223	2.328099	CGAACTCCAGCACCTTGGC	61.328	63.158	0.00	0.00	38.16	4.52
223	224	0.951040	GACGAACTCCAGCACCTTGG	60.951	60.000	0.00	0.00	39.70	3.61
224	225	0.249868	TGACGAACTCCAGCACCTTG	60.250	55.000	0.00	0.00	0.00	3.61
225	226	0.468226	TTGACGAACTCCAGCACCTT	59.532	50.000	0.00	0.00	0.00	3.50
226	227	0.034059	CTTGACGAACTCCAGCACCT	59.966	55.000	0.00	0.00	0.00	4.00
227	228	0.951040	CCTTGACGAACTCCAGCACC	60.951	60.000	0.00	0.00	0.00	5.01
228	229	1.569479	GCCTTGACGAACTCCAGCAC	61.569	60.000	0.00	0.00	0.00	4.40
229	230	1.301716	GCCTTGACGAACTCCAGCA	60.302	57.895	0.00	0.00	0.00	4.41
230	231	2.035442	GGCCTTGACGAACTCCAGC	61.035	63.158	0.00	0.00	0.00	4.85
231	232	0.671781	CAGGCCTTGACGAACTCCAG	60.672	60.000	0.00	0.00	0.00	3.86
232	233	1.371183	CAGGCCTTGACGAACTCCA	59.629	57.895	0.00	0.00	0.00	3.86
233	234	1.376037	CCAGGCCTTGACGAACTCC	60.376	63.158	0.00	0.00	0.00	3.85
234	235	0.606604	TACCAGGCCTTGACGAACTC	59.393	55.000	11.55	0.00	0.00	3.01
235	236	0.320697	GTACCAGGCCTTGACGAACT	59.679	55.000	11.55	0.00	0.00	3.01
236	237	0.320697	AGTACCAGGCCTTGACGAAC	59.679	55.000	11.55	3.38	0.00	3.95
237	238	0.606604	GAGTACCAGGCCTTGACGAA	59.393	55.000	11.55	0.00	0.00	3.85
238	239	1.255667	GGAGTACCAGGCCTTGACGA	61.256	60.000	11.55	0.00	35.97	4.20
239	240	1.218316	GGAGTACCAGGCCTTGACG	59.782	63.158	11.55	0.00	35.97	4.35
240	241	1.218316	CGGAGTACCAGGCCTTGAC	59.782	63.158	11.55	5.56	35.59	3.18
241	242	1.987855	CCGGAGTACCAGGCCTTGA	60.988	63.158	11.55	0.00	35.59	3.02
242	243	2.584608	CCGGAGTACCAGGCCTTG	59.415	66.667	0.00	0.68	35.59	3.61
243	244	3.400054	GCCGGAGTACCAGGCCTT	61.400	66.667	5.05	0.00	44.13	4.35
246	247	4.814294	CACGCCGGAGTACCAGGC	62.814	72.222	11.60	12.31	45.34	4.85
247	248	4.814294	GCACGCCGGAGTACCAGG	62.814	72.222	11.60	0.00	35.59	4.45
251	252	4.112341	AGACGCACGCCGGAGTAC	62.112	66.667	11.60	4.04	42.52	2.73
252	253	4.111016	CAGACGCACGCCGGAGTA	62.111	66.667	11.60	0.00	42.52	2.59
263	264	4.030452	GCCAACTGTGCCAGACGC	62.030	66.667	8.91	4.01	35.18	5.19
264	265	3.716006	CGCCAACTGTGCCAGACG	61.716	66.667	8.91	4.12	35.18	4.18
265	266	2.280797	TCGCCAACTGTGCCAGAC	60.281	61.111	8.91	0.00	35.18	3.51
266	267	2.280797	GTCGCCAACTGTGCCAGA	60.281	61.111	8.91	0.00	35.18	3.86
267	268	3.357079	GGTCGCCAACTGTGCCAG	61.357	66.667	1.16	1.16	37.52	4.85
268	269	3.414136	AAGGTCGCCAACTGTGCCA	62.414	57.895	0.00	0.00	0.00	4.92
269	270	2.594592	AAGGTCGCCAACTGTGCC	60.595	61.111	0.00	0.00	0.00	5.01
270	271	2.617274	GGAAGGTCGCCAACTGTGC	61.617	63.158	0.00	0.00	0.00	4.57
271	272	2.317609	CGGAAGGTCGCCAACTGTG	61.318	63.158	0.00	0.00	0.00	3.66
272	273	2.030562	CGGAAGGTCGCCAACTGT	59.969	61.111	0.00	0.00	0.00	3.55
273	274	2.027625	GACGGAAGGTCGCCAACTG	61.028	63.158	0.00	0.65	35.61	3.16
274	275	2.342648	GACGGAAGGTCGCCAACT	59.657	61.111	0.00	0.00	35.61	3.16
281	282	2.283529	TGCCTCCTGACGGAAGGTC	61.284	63.158	5.65	0.00	46.27	3.85
282	283	2.203788	TGCCTCCTGACGGAAGGT	60.204	61.111	5.65	0.00	39.29	3.50
283	284	2.266055	GTGCCTCCTGACGGAAGG	59.734	66.667	0.00	0.00	39.29	3.46
284	285	1.079543	CAGTGCCTCCTGACGGAAG	60.080	63.158	0.00	0.00	39.29	3.46
285	286	3.059982	CAGTGCCTCCTGACGGAA	58.940	61.111	0.00	0.00	39.29	4.30
286	287	3.695606	GCAGTGCCTCCTGACGGA	61.696	66.667	2.85	0.00	37.82	4.69
287	288	4.767255	GGCAGTGCCTCCTGACGG	62.767	72.222	27.48	0.00	46.69	4.79
324	325	1.006805	CTCGGATGGCGATGTCCTC	60.007	63.158	0.00	0.00	32.19	3.71
325	326	3.133014	CTCGGATGGCGATGTCCT	58.867	61.111	0.00	0.00	32.19	3.85
326	327	2.663188	GCTCGGATGGCGATGTCC	60.663	66.667	0.00	0.00	0.00	4.02
369	370	1.586564	CCGAGATGAAGACGCCGAC	60.587	63.158	0.00	0.00	0.00	4.79
370	371	1.715862	CTCCGAGATGAAGACGCCGA	61.716	60.000	0.00	0.00	0.00	5.54
371	372	1.298713	CTCCGAGATGAAGACGCCG	60.299	63.158	0.00	0.00	0.00	6.46
372	373	1.590259	GCTCCGAGATGAAGACGCC	60.590	63.158	0.00	0.00	0.00	5.68
373	374	1.941734	CGCTCCGAGATGAAGACGC	60.942	63.158	0.00	0.00	0.00	5.19
374	375	1.298713	CCGCTCCGAGATGAAGACG	60.299	63.158	0.00	0.00	0.00	4.18
375	376	1.066587	CCCGCTCCGAGATGAAGAC	59.933	63.158	0.00	0.00	0.00	3.01
376	377	2.127869	CCCCGCTCCGAGATGAAGA	61.128	63.158	0.00	0.00	0.00	2.87
377	378	2.081425	CTCCCCGCTCCGAGATGAAG	62.081	65.000	0.00	0.00	0.00	3.02
378	379	2.043349	TCCCCGCTCCGAGATGAA	60.043	61.111	0.00	0.00	0.00	2.57
379	380	2.519541	CTCCCCGCTCCGAGATGA	60.520	66.667	0.00	0.00	0.00	2.92
380	381	2.519541	TCTCCCCGCTCCGAGATG	60.520	66.667	0.00	0.00	30.16	2.90
381	382	2.519780	GTCTCCCCGCTCCGAGAT	60.520	66.667	0.00	0.00	37.46	2.75
404	405	2.433491	TTCGGATTGTGGTCGGCG	60.433	61.111	0.00	0.00	0.00	6.46
405	406	1.669760	TGTTCGGATTGTGGTCGGC	60.670	57.895	0.00	0.00	0.00	5.54
406	407	1.623081	CGTGTTCGGATTGTGGTCGG	61.623	60.000	0.00	0.00	0.00	4.79
407	408	1.779061	CGTGTTCGGATTGTGGTCG	59.221	57.895	0.00	0.00	0.00	4.79
408	409	1.495951	GCGTGTTCGGATTGTGGTC	59.504	57.895	0.00	0.00	37.56	4.02
409	410	1.964373	GGCGTGTTCGGATTGTGGT	60.964	57.895	0.00	0.00	37.56	4.16
410	411	1.963855	TGGCGTGTTCGGATTGTGG	60.964	57.895	0.00	0.00	37.56	4.17
411	412	1.206578	GTGGCGTGTTCGGATTGTG	59.793	57.895	0.00	0.00	37.56	3.33
412	413	1.964373	GGTGGCGTGTTCGGATTGT	60.964	57.895	0.00	0.00	37.56	2.71
413	414	1.635663	GAGGTGGCGTGTTCGGATTG	61.636	60.000	0.00	0.00	37.56	2.67
414	415	1.375523	GAGGTGGCGTGTTCGGATT	60.376	57.895	0.00	0.00	37.56	3.01
415	416	0.968901	TAGAGGTGGCGTGTTCGGAT	60.969	55.000	0.00	0.00	37.56	4.18
416	417	1.592400	CTAGAGGTGGCGTGTTCGGA	61.592	60.000	0.00	0.00	37.56	4.55
417	418	1.153823	CTAGAGGTGGCGTGTTCGG	60.154	63.158	0.00	0.00	37.56	4.30
418	419	0.806868	TACTAGAGGTGGCGTGTTCG	59.193	55.000	0.00	0.00	40.37	3.95
419	420	3.521947	AATACTAGAGGTGGCGTGTTC	57.478	47.619	0.00	0.00	0.00	3.18
420	421	3.975168	AAATACTAGAGGTGGCGTGTT	57.025	42.857	0.00	0.00	0.00	3.32
421	422	3.675228	CGAAAATACTAGAGGTGGCGTGT	60.675	47.826	0.00	0.00	0.00	4.49
422	423	2.858344	CGAAAATACTAGAGGTGGCGTG	59.142	50.000	0.00	0.00	0.00	5.34
423	424	2.494870	ACGAAAATACTAGAGGTGGCGT	59.505	45.455	0.00	0.00	0.00	5.68
424	425	3.114065	GACGAAAATACTAGAGGTGGCG	58.886	50.000	0.00	0.00	0.00	5.69
425	426	3.118884	TGGACGAAAATACTAGAGGTGGC	60.119	47.826	0.00	0.00	0.00	5.01
426	427	4.430908	GTGGACGAAAATACTAGAGGTGG	58.569	47.826	0.00	0.00	0.00	4.61
427	428	4.103357	CGTGGACGAAAATACTAGAGGTG	58.897	47.826	0.00	0.00	43.02	4.00
428	429	4.012374	TCGTGGACGAAAATACTAGAGGT	58.988	43.478	0.00	0.00	46.30	3.85
429	430	4.627611	TCGTGGACGAAAATACTAGAGG	57.372	45.455	0.00	0.00	46.30	3.69
442	443	2.280321	AACCCGGTTTCGTGGACG	60.280	61.111	0.00	0.00	41.45	4.79
443	444	2.255881	CCAACCCGGTTTCGTGGAC	61.256	63.158	0.00	0.00	33.51	4.02
444	445	2.111460	CCAACCCGGTTTCGTGGA	59.889	61.111	0.00	0.00	33.51	4.02
445	446	3.666253	GCCAACCCGGTTTCGTGG	61.666	66.667	0.00	0.34	36.97	4.94
446	447	2.005960	TTTGCCAACCCGGTTTCGTG	62.006	55.000	0.00	0.00	36.97	4.35
447	448	1.110518	ATTTGCCAACCCGGTTTCGT	61.111	50.000	0.00	0.00	36.97	3.85
448	449	0.665972	CATTTGCCAACCCGGTTTCG	60.666	55.000	0.00	0.00	36.97	3.46
449	450	0.948623	GCATTTGCCAACCCGGTTTC	60.949	55.000	0.00	0.00	36.97	2.78
450	451	1.070615	GCATTTGCCAACCCGGTTT	59.929	52.632	0.00	0.00	36.97	3.27
451	452	1.406860	AAGCATTTGCCAACCCGGTT	61.407	50.000	0.00	0.00	43.38	4.44
452	453	1.406860	AAAGCATTTGCCAACCCGGT	61.407	50.000	0.00	0.00	43.38	5.28
453	454	0.250252	AAAAGCATTTGCCAACCCGG	60.250	50.000	0.00	0.00	39.02	5.73
454	455	0.867086	CAAAAGCATTTGCCAACCCG	59.133	50.000	0.88	0.00	39.02	5.28
455	456	2.252976	TCAAAAGCATTTGCCAACCC	57.747	45.000	9.51	0.00	44.52	4.11
456	457	3.465871	TCTTCAAAAGCATTTGCCAACC	58.534	40.909	9.51	0.00	44.52	3.77
457	458	5.164061	CGTATCTTCAAAAGCATTTGCCAAC	60.164	40.000	9.51	3.22	44.52	3.77
458	459	4.922692	CGTATCTTCAAAAGCATTTGCCAA	59.077	37.500	9.51	0.00	44.52	4.52
459	460	4.217334	TCGTATCTTCAAAAGCATTTGCCA	59.783	37.500	9.51	0.00	44.52	4.92
460	461	4.732784	TCGTATCTTCAAAAGCATTTGCC	58.267	39.130	9.51	0.00	44.52	4.52
461	462	6.399986	GGTTTCGTATCTTCAAAAGCATTTGC	60.400	38.462	9.51	0.00	44.52	3.68
462	463	6.640499	TGGTTTCGTATCTTCAAAAGCATTTG	59.360	34.615	8.09	8.09	45.92	2.32
463	464	6.744112	TGGTTTCGTATCTTCAAAAGCATTT	58.256	32.000	0.00	0.00	42.41	2.32
464	465	6.325919	TGGTTTCGTATCTTCAAAAGCATT	57.674	33.333	0.00	0.00	35.05	3.56
465	466	5.957842	TGGTTTCGTATCTTCAAAAGCAT	57.042	34.783	0.00	0.00	35.05	3.79
466	467	5.759506	TTGGTTTCGTATCTTCAAAAGCA	57.240	34.783	0.00	0.00	37.34	3.91
467	468	6.861055	TGAATTGGTTTCGTATCTTCAAAAGC	59.139	34.615	0.00	0.00	37.13	3.51
468	469	8.970691	ATGAATTGGTTTCGTATCTTCAAAAG	57.029	30.769	0.00	0.00	37.13	2.27
478	479	9.661563	AGACAAGTAATATGAATTGGTTTCGTA	57.338	29.630	5.29	0.00	39.54	3.43
479	480	8.561738	AGACAAGTAATATGAATTGGTTTCGT	57.438	30.769	5.29	0.00	37.13	3.85
490	491	9.197306	TGAAGGCTACTAAGACAAGTAATATGA	57.803	33.333	0.00	0.00	31.72	2.15
491	492	9.469807	CTGAAGGCTACTAAGACAAGTAATATG	57.530	37.037	0.00	0.00	31.72	1.78
492	493	8.643324	CCTGAAGGCTACTAAGACAAGTAATAT	58.357	37.037	0.00	0.00	31.72	1.28
493	494	7.837689	TCCTGAAGGCTACTAAGACAAGTAATA	59.162	37.037	0.00	0.00	31.72	0.98
494	495	6.668283	TCCTGAAGGCTACTAAGACAAGTAAT	59.332	38.462	0.00	0.00	31.72	1.89
495	496	6.014647	TCCTGAAGGCTACTAAGACAAGTAA	58.985	40.000	0.00	0.00	31.72	2.24
496	497	5.577100	TCCTGAAGGCTACTAAGACAAGTA	58.423	41.667	0.00	0.00	30.50	2.24
497	498	4.417437	TCCTGAAGGCTACTAAGACAAGT	58.583	43.478	0.00	0.00	30.50	3.16
498	499	5.452636	GGATCCTGAAGGCTACTAAGACAAG	60.453	48.000	3.84	0.00	30.50	3.16
499	500	4.406003	GGATCCTGAAGGCTACTAAGACAA	59.594	45.833	3.84	0.00	30.50	3.18
500	501	3.961408	GGATCCTGAAGGCTACTAAGACA	59.039	47.826	3.84	0.00	30.50	3.41
501	502	4.038642	CAGGATCCTGAAGGCTACTAAGAC	59.961	50.000	34.54	0.00	46.30	3.01
502	503	4.219115	CAGGATCCTGAAGGCTACTAAGA	58.781	47.826	34.54	0.00	46.30	2.10
503	504	4.599047	CAGGATCCTGAAGGCTACTAAG	57.401	50.000	34.54	4.13	46.30	2.18
510	511	8.391702	TAAAGCATTTATCAGGATCCTGAAGGC	61.392	40.741	40.84	35.26	46.60	4.35
511	512	7.000472	TAAAGCATTTATCAGGATCCTGAAGG	59.000	38.462	40.84	28.99	46.60	3.46
512	513	8.455903	TTAAAGCATTTATCAGGATCCTGAAG	57.544	34.615	40.84	28.39	46.60	3.02
513	514	9.425248	AATTAAAGCATTTATCAGGATCCTGAA	57.575	29.630	40.84	28.32	46.60	3.02
529	530	9.591792	GGCTTCTATCTTTGAAAATTAAAGCAT	57.408	29.630	0.00	0.00	37.66	3.79
530	531	8.584157	TGGCTTCTATCTTTGAAAATTAAAGCA	58.416	29.630	0.00	0.00	37.66	3.91
531	532	8.986477	TGGCTTCTATCTTTGAAAATTAAAGC	57.014	30.769	0.00	0.00	35.61	3.51
538	539	9.857656	AGATGATATGGCTTCTATCTTTGAAAA	57.142	29.630	0.00	0.00	0.00	2.29
539	540	9.499479	GAGATGATATGGCTTCTATCTTTGAAA	57.501	33.333	0.00	0.00	0.00	2.69
540	541	8.654094	TGAGATGATATGGCTTCTATCTTTGAA	58.346	33.333	0.00	0.00	0.00	2.69
541	542	8.093307	GTGAGATGATATGGCTTCTATCTTTGA	58.907	37.037	0.00	0.00	0.00	2.69
542	543	8.095792	AGTGAGATGATATGGCTTCTATCTTTG	58.904	37.037	0.00	0.00	0.00	2.77
543	544	8.204903	AGTGAGATGATATGGCTTCTATCTTT	57.795	34.615	0.00	0.00	0.00	2.52
544	545	7.795534	AGTGAGATGATATGGCTTCTATCTT	57.204	36.000	0.00	0.00	0.00	2.40
545	546	7.454066	TGAAGTGAGATGATATGGCTTCTATCT	59.546	37.037	0.00	0.00	33.96	1.98
546	547	7.609960	TGAAGTGAGATGATATGGCTTCTATC	58.390	38.462	0.00	0.00	33.96	2.08
547	548	7.550597	TGAAGTGAGATGATATGGCTTCTAT	57.449	36.000	0.00	0.00	33.96	1.98
548	549	6.983906	TGAAGTGAGATGATATGGCTTCTA	57.016	37.500	0.00	0.00	33.96	2.10
549	550	5.883685	TGAAGTGAGATGATATGGCTTCT	57.116	39.130	0.00	0.00	33.96	2.85
550	551	6.317140	TGTTTGAAGTGAGATGATATGGCTTC	59.683	38.462	0.00	0.00	33.57	3.86
551	552	6.182627	TGTTTGAAGTGAGATGATATGGCTT	58.817	36.000	0.00	0.00	0.00	4.35
552	553	5.748402	TGTTTGAAGTGAGATGATATGGCT	58.252	37.500	0.00	0.00	0.00	4.75
553	554	6.630444	ATGTTTGAAGTGAGATGATATGGC	57.370	37.500	0.00	0.00	0.00	4.40
580	581	6.739565	GCATCAGTTGTGGGAGAAAAGAATTT	60.740	38.462	0.00	0.00	42.41	1.82
581	582	5.279156	GCATCAGTTGTGGGAGAAAAGAATT	60.279	40.000	0.00	0.00	0.00	2.17
582	583	4.219288	GCATCAGTTGTGGGAGAAAAGAAT	59.781	41.667	0.00	0.00	0.00	2.40
583	584	3.569701	GCATCAGTTGTGGGAGAAAAGAA	59.430	43.478	0.00	0.00	0.00	2.52
584	585	3.149196	GCATCAGTTGTGGGAGAAAAGA	58.851	45.455	0.00	0.00	0.00	2.52
585	586	2.886523	TGCATCAGTTGTGGGAGAAAAG	59.113	45.455	0.00	0.00	0.00	2.27
586	587	2.942804	TGCATCAGTTGTGGGAGAAAA	58.057	42.857	0.00	0.00	0.00	2.29
587	588	2.655090	TGCATCAGTTGTGGGAGAAA	57.345	45.000	0.00	0.00	0.00	2.52
588	589	2.106338	TCTTGCATCAGTTGTGGGAGAA	59.894	45.455	0.00	0.00	0.00	2.87
589	590	1.699083	TCTTGCATCAGTTGTGGGAGA	59.301	47.619	0.00	0.00	0.00	3.71
590	591	2.189594	TCTTGCATCAGTTGTGGGAG	57.810	50.000	0.00	0.00	0.00	4.30
591	592	2.655090	TTCTTGCATCAGTTGTGGGA	57.345	45.000	0.00	0.00	0.00	4.37
592	593	3.731652	TTTTCTTGCATCAGTTGTGGG	57.268	42.857	0.00	0.00	0.00	4.61
593	594	4.624015	ACATTTTCTTGCATCAGTTGTGG	58.376	39.130	0.00	0.00	0.00	4.17
594	595	7.140705	TCTAACATTTTCTTGCATCAGTTGTG	58.859	34.615	0.00	0.00	0.00	3.33
595	596	7.275888	TCTAACATTTTCTTGCATCAGTTGT	57.724	32.000	0.00	0.00	0.00	3.32
596	597	8.644619	CATTCTAACATTTTCTTGCATCAGTTG	58.355	33.333	0.00	0.00	0.00	3.16
597	598	8.579006	TCATTCTAACATTTTCTTGCATCAGTT	58.421	29.630	0.00	0.00	0.00	3.16
598	599	8.025445	GTCATTCTAACATTTTCTTGCATCAGT	58.975	33.333	0.00	0.00	0.00	3.41
599	600	8.242053	AGTCATTCTAACATTTTCTTGCATCAG	58.758	33.333	0.00	0.00	0.00	2.90
600	601	8.114331	AGTCATTCTAACATTTTCTTGCATCA	57.886	30.769	0.00	0.00	0.00	3.07
601	602	8.976986	AAGTCATTCTAACATTTTCTTGCATC	57.023	30.769	0.00	0.00	0.00	3.91
602	603	9.768662	AAAAGTCATTCTAACATTTTCTTGCAT	57.231	25.926	0.00	0.00	0.00	3.96
611	612	9.753674	TCCATTCCTAAAAGTCATTCTAACATT	57.246	29.630	0.00	0.00	0.00	2.71
612	613	9.753674	TTCCATTCCTAAAAGTCATTCTAACAT	57.246	29.630	0.00	0.00	0.00	2.71
613	614	9.231297	CTTCCATTCCTAAAAGTCATTCTAACA	57.769	33.333	0.00	0.00	0.00	2.41
614	615	8.184848	GCTTCCATTCCTAAAAGTCATTCTAAC	58.815	37.037	0.00	0.00	0.00	2.34
615	616	8.109634	AGCTTCCATTCCTAAAAGTCATTCTAA	58.890	33.333	0.00	0.00	0.00	2.10
616	617	7.554118	CAGCTTCCATTCCTAAAAGTCATTCTA	59.446	37.037	0.00	0.00	0.00	2.10
617	618	6.376581	CAGCTTCCATTCCTAAAAGTCATTCT	59.623	38.462	0.00	0.00	0.00	2.40
618	619	6.151817	ACAGCTTCCATTCCTAAAAGTCATTC	59.848	38.462	0.00	0.00	0.00	2.67
619	620	6.012745	ACAGCTTCCATTCCTAAAAGTCATT	58.987	36.000	0.00	0.00	0.00	2.57
620	621	5.574188	ACAGCTTCCATTCCTAAAAGTCAT	58.426	37.500	0.00	0.00	0.00	3.06
621	622	4.985538	ACAGCTTCCATTCCTAAAAGTCA	58.014	39.130	0.00	0.00	0.00	3.41
622	623	4.093556	CGACAGCTTCCATTCCTAAAAGTC	59.906	45.833	0.00	0.00	0.00	3.01
623	624	4.003648	CGACAGCTTCCATTCCTAAAAGT	58.996	43.478	0.00	0.00	0.00	2.66
628	629	2.103094	CCATCGACAGCTTCCATTCCTA	59.897	50.000	0.00	0.00	0.00	2.94
631	632	2.315925	TCCATCGACAGCTTCCATTC	57.684	50.000	0.00	0.00	0.00	2.67
637	638	2.743183	GCTAACCATCCATCGACAGCTT	60.743	50.000	0.00	0.00	0.00	3.74
639	640	1.221414	GCTAACCATCCATCGACAGC	58.779	55.000	0.00	0.00	0.00	4.40
640	641	2.602257	TGCTAACCATCCATCGACAG	57.398	50.000	0.00	0.00	0.00	3.51
648	649	2.542595	CGGTCGTTATTGCTAACCATCC	59.457	50.000	0.00	0.00	34.88	3.51
653	654	4.614946	ACTATCCGGTCGTTATTGCTAAC	58.385	43.478	0.00	0.00	34.98	2.34
662	663	6.029346	TCTAAAAAGAACTATCCGGTCGTT	57.971	37.500	0.00	3.21	0.00	3.85
669	670	7.490725	GGTCGTTACCTCTAAAAAGAACTATCC	59.509	40.741	0.00	0.00	43.08	2.59
675	676	6.425721	CACATGGTCGTTACCTCTAAAAAGAA	59.574	38.462	0.00	0.00	46.91	2.52
683	684	0.249398	GCCACATGGTCGTTACCTCT	59.751	55.000	0.00	0.00	46.91	3.69
748	771	9.997172	ATCAGATGGGTATCAACTAGTATATGA	57.003	33.333	0.00	0.00	35.70	2.15
752	775	7.730332	TCACATCAGATGGGTATCAACTAGTAT	59.270	37.037	12.62	0.00	35.70	2.12
753	776	7.066781	TCACATCAGATGGGTATCAACTAGTA	58.933	38.462	12.62	0.00	35.70	1.82
755	778	6.410942	TCACATCAGATGGGTATCAACTAG	57.589	41.667	12.62	0.00	35.70	2.57
759	782	9.645128	ATTTTTATCACATCAGATGGGTATCAA	57.355	29.630	12.62	1.77	35.70	2.57
855	890	4.082523	GTGGCGCCTGCTCCAGTA	62.083	66.667	29.70	0.00	42.25	2.74
926	961	0.710588	TGGGAGAGAGACCCTTGCTA	59.289	55.000	0.00	0.00	46.82	3.49
1002	1037	2.432628	CCGTCGTCCTTGTGGCTC	60.433	66.667	0.00	0.00	0.00	4.70
1003	1038	4.681978	GCCGTCGTCCTTGTGGCT	62.682	66.667	0.00	0.00	42.44	4.75
1005	1040	4.351938	TCGCCGTCGTCCTTGTGG	62.352	66.667	0.00	0.00	36.96	4.17
1006	1041	2.805353	CTCGCCGTCGTCCTTGTG	60.805	66.667	0.00	0.00	36.96	3.33
1007	1042	4.052229	CCTCGCCGTCGTCCTTGT	62.052	66.667	0.00	0.00	36.96	3.16
1008	1043	4.052229	ACCTCGCCGTCGTCCTTG	62.052	66.667	0.00	0.00	36.96	3.61
1009	1044	4.052229	CACCTCGCCGTCGTCCTT	62.052	66.667	0.00	0.00	36.96	3.36
1015	1050	4.736896	GACACCCACCTCGCCGTC	62.737	72.222	0.00	0.00	0.00	4.79
1018	1053	4.083862	GAGGACACCCACCTCGCC	62.084	72.222	0.00	0.00	43.25	5.54
1022	1057	1.458777	TCAACGAGGACACCCACCT	60.459	57.895	0.00	0.00	40.80	4.00
1023	1058	1.004918	CTCAACGAGGACACCCACC	60.005	63.158	0.00	0.00	33.88	4.61
1024	1059	0.038159	CTCTCAACGAGGACACCCAC	60.038	60.000	0.00	0.00	36.06	4.61
1025	1060	1.816863	GCTCTCAACGAGGACACCCA	61.817	60.000	0.00	0.00	40.25	4.51
1026	1061	1.079750	GCTCTCAACGAGGACACCC	60.080	63.158	0.00	0.00	40.25	4.61
1027	1062	1.079750	GGCTCTCAACGAGGACACC	60.080	63.158	0.00	0.00	40.25	4.16
1028	1063	0.247736	ATGGCTCTCAACGAGGACAC	59.752	55.000	0.00	0.00	40.25	3.67
1029	1064	0.247460	CATGGCTCTCAACGAGGACA	59.753	55.000	0.00	0.00	40.25	4.02
1030	1065	0.532573	TCATGGCTCTCAACGAGGAC	59.467	55.000	0.00	0.00	40.25	3.85
1031	1066	0.532573	GTCATGGCTCTCAACGAGGA	59.467	55.000	0.00	0.00	40.25	3.71
1032	1067	0.247460	TGTCATGGCTCTCAACGAGG	59.753	55.000	0.00	0.00	40.25	4.63
1033	1068	2.084610	TTGTCATGGCTCTCAACGAG	57.915	50.000	0.00	0.00	42.88	4.18
1034	1069	2.349590	CATTGTCATGGCTCTCAACGA	58.650	47.619	0.00	0.00	0.00	3.85
1035	1070	1.399440	CCATTGTCATGGCTCTCAACG	59.601	52.381	0.00	0.00	43.95	4.10
1090	1125	3.639541	AAGACTCCTGCTCGCTGCG	62.640	63.158	17.25	17.25	46.63	5.18
1107	1142	2.095853	GCGATCGAGGCATTGAAAGAAA	59.904	45.455	21.57	0.00	0.00	2.52
1157	1192	4.493747	CGTCGTCGGAGGGGAAGC	62.494	72.222	0.00	0.00	0.00	3.86
1256	1291	1.760086	CCCTCATCCTCGTCCAGCT	60.760	63.158	0.00	0.00	0.00	4.24
1274	1309	1.099689	CAAGTCCTCCTCCTCGTCTC	58.900	60.000	0.00	0.00	0.00	3.36
1275	1310	0.406361	ACAAGTCCTCCTCCTCGTCT	59.594	55.000	0.00	0.00	0.00	4.18
1276	1311	0.812549	GACAAGTCCTCCTCCTCGTC	59.187	60.000	0.00	0.00	0.00	4.20
1371	1406	3.089838	CTGTTGAGGCCCATCCCA	58.910	61.111	0.00	0.00	34.51	4.37
1398	1433	1.666011	GATGCGGCTTCGGAGGATA	59.334	57.895	0.00	0.00	37.71	2.59
1486	1521	1.965754	ATCTGGAGAGGCGTGGAAGC	61.966	60.000	0.00	0.00	0.00	3.86
1499	1534	2.013563	GCTGCCGTTTGATGATCTGGA	61.014	52.381	0.00	0.00	0.00	3.86
1501	1536	0.379669	GGCTGCCGTTTGATGATCTG	59.620	55.000	1.35	0.00	0.00	2.90
1579	1614	0.037326	AATGCCGTCAGCTTTCTCGA	60.037	50.000	0.00	0.00	44.23	4.04
1642	1677	2.037620	GATCGGAGAGCCCTGTGCAT	62.038	60.000	0.00	0.00	43.63	3.96
1688	1723	2.264480	CATCGTCCTTGGACGCCA	59.736	61.111	30.49	18.72	46.91	5.69
1704	1739	5.571658	GCAGTTTCTATTTTCTCCTCCTCCA	60.572	44.000	0.00	0.00	0.00	3.86
1734	1769	1.148310	CGAACACTTTGCCGTCATCT	58.852	50.000	0.00	0.00	0.00	2.90
1945	1980	4.796231	GGCGACTGTGGCGACGAT	62.796	66.667	8.69	0.00	0.00	3.73
2006	2047	4.719369	GAAGCGCGGACGACCTGT	62.719	66.667	8.83	0.00	43.93	4.00
2825	2873	9.121658	TGAATGGACTAGTTGATACTACTACAG	57.878	37.037	0.00	0.00	35.78	2.74
2826	2874	9.642343	ATGAATGGACTAGTTGATACTACTACA	57.358	33.333	0.00	0.00	35.78	2.74
2828	2876	9.000486	CGATGAATGGACTAGTTGATACTACTA	58.000	37.037	0.00	0.00	35.78	1.82
2829	2877	7.502895	ACGATGAATGGACTAGTTGATACTACT	59.497	37.037	0.00	0.00	35.78	2.57
2843	2891	6.236017	TGTGTTTTTAGACGATGAATGGAC	57.764	37.500	0.00	0.00	0.00	4.02
2875	2923	6.655003	ACGTATTAAGCTCATATGGATTTGGG	59.345	38.462	2.13	0.00	0.00	4.12
2916	2964	3.065371	CGATCGCAGCCTAGGAAAAATTT	59.935	43.478	14.75	0.00	0.00	1.82
2961	3011	3.228453	ACCTCTTGTCTTGTAGAACCGA	58.772	45.455	0.00	0.00	0.00	4.69
3058	3111	0.387622	CTTGCAATCTGGCACCAACG	60.388	55.000	0.00	0.00	44.86	4.10
3170	3223	6.039270	CCATTGTTTGTCAGTTCAAGAAGGTA	59.961	38.462	0.00	0.00	0.00	3.08
3171	3224	5.163519	CCATTGTTTGTCAGTTCAAGAAGGT	60.164	40.000	0.00	0.00	0.00	3.50
3172	3225	5.284079	CCATTGTTTGTCAGTTCAAGAAGG	58.716	41.667	0.00	0.00	0.00	3.46
3173	3226	4.741676	GCCATTGTTTGTCAGTTCAAGAAG	59.258	41.667	0.00	0.00	0.00	2.85
3214	3267	3.040795	CGTTAACATCGTCCGGTATCAG	58.959	50.000	0.00	0.00	0.00	2.90
3219	3272	3.627577	ACTATACGTTAACATCGTCCGGT	59.372	43.478	0.00	0.00	41.72	5.28
3220	3273	4.214980	ACTATACGTTAACATCGTCCGG	57.785	45.455	6.39	0.00	41.72	5.14
3225	3285	4.191161	GCGCAAACTATACGTTAACATCG	58.809	43.478	0.30	0.00	33.90	3.84
3232	3292	1.085501	CCCGGCGCAAACTATACGTT	61.086	55.000	10.83	0.00	37.47	3.99
3236	3296	0.462403	GTTCCCCGGCGCAAACTATA	60.462	55.000	10.83	0.00	0.00	1.31
3237	3297	1.747745	GTTCCCCGGCGCAAACTAT	60.748	57.895	10.83	0.00	0.00	2.12
3238	3298	2.358984	GTTCCCCGGCGCAAACTA	60.359	61.111	10.83	0.00	0.00	2.24
3573	3633	3.376935	CTTGACGCCGATGCCTCCT	62.377	63.158	0.00	0.00	0.00	3.69
3621	3681	2.563179	GTCCCTGCAGAAGAAGTACTCA	59.437	50.000	17.39	0.00	0.00	3.41
3825	3885	4.827087	CGCAGCATCTCCGCCTGT	62.827	66.667	0.00	0.00	0.00	4.00
3939	3999	3.482232	GATCCCCACTGGCATCCCG	62.482	68.421	0.00	0.00	0.00	5.14
3986	4046	1.002366	CTTCCAACGAATCCAGCTCG	58.998	55.000	0.00	0.00	42.06	5.03
3989	4049	0.035439	TCCCTTCCAACGAATCCAGC	60.035	55.000	0.00	0.00	0.00	4.85
4017	4077	2.816087	GTCCTGCTGCAAAGATCAAGAA	59.184	45.455	3.02	0.00	0.00	2.52
4064	4124	1.570528	GTCGTACGTGTTCGATCGTTC	59.429	52.381	15.94	9.89	40.70	3.95
4091	4151	0.530870	TCGTTGACCGATTGTGTGCA	60.531	50.000	0.00	0.00	41.60	4.57
4092	4152	0.584396	TTCGTTGACCGATTGTGTGC	59.416	50.000	0.00	0.00	46.75	4.57
4093	4153	1.595328	TGTTCGTTGACCGATTGTGTG	59.405	47.619	0.00	0.00	46.75	3.82
4094	4154	1.942677	TGTTCGTTGACCGATTGTGT	58.057	45.000	0.00	0.00	46.75	3.72
4095	4155	3.536158	AATGTTCGTTGACCGATTGTG	57.464	42.857	0.00	0.00	46.75	3.33
4096	4156	4.035792	TCAAAATGTTCGTTGACCGATTGT	59.964	37.500	0.00	0.00	46.75	2.71
4097	4157	4.532276	TCAAAATGTTCGTTGACCGATTG	58.468	39.130	0.00	0.00	46.75	2.67
4106	4166	3.128589	CCGATCCCATCAAAATGTTCGTT	59.871	43.478	0.00	0.00	31.37	3.85
4135	4208	2.582052	CCAAACACAGAGGTAAAGCCA	58.418	47.619	0.00	0.00	40.61	4.75
4137	4210	2.583143	ACCCAAACACAGAGGTAAAGC	58.417	47.619	0.00	0.00	0.00	3.51
4138	4211	4.324267	CCTACCCAAACACAGAGGTAAAG	58.676	47.826	0.00	0.00	34.54	1.85
4141	4214	2.262637	CCCTACCCAAACACAGAGGTA	58.737	52.381	0.00	0.00	33.70	3.08
4142	4215	1.064825	CCCTACCCAAACACAGAGGT	58.935	55.000	0.00	0.00	36.36	3.85
4144	4217	0.673644	CGCCCTACCCAAACACAGAG	60.674	60.000	0.00	0.00	0.00	3.35
4145	4218	1.373435	CGCCCTACCCAAACACAGA	59.627	57.895	0.00	0.00	0.00	3.41
4146	4219	1.674322	CCGCCCTACCCAAACACAG	60.674	63.158	0.00	0.00	0.00	3.66
4281	4356	8.134895	AGATATTTCTTCTGTTTCACGCAAAAA	58.865	29.630	0.00	0.00	0.00	1.94
4283	4358	7.202016	AGATATTTCTTCTGTTTCACGCAAA	57.798	32.000	0.00	0.00	0.00	3.68
4284	4359	6.801539	AGATATTTCTTCTGTTTCACGCAA	57.198	33.333	0.00	0.00	0.00	4.85
4285	4360	6.801539	AAGATATTTCTTCTGTTTCACGCA	57.198	33.333	0.00	0.00	37.69	5.24
4286	4361	9.427127	GATTAAGATATTTCTTCTGTTTCACGC	57.573	33.333	1.33	0.00	41.36	5.34
4287	4362	9.922305	GGATTAAGATATTTCTTCTGTTTCACG	57.078	33.333	1.33	0.00	41.36	4.35
4323	4405	0.539986	GTCCGGTGGCTCCAAAGATA	59.460	55.000	0.00	0.00	35.57	1.98
4326	4408	1.672356	CTGTCCGGTGGCTCCAAAG	60.672	63.158	0.00	0.00	35.57	2.77
4339	4421	3.909086	GACCACTGCTGGGCTGTCC	62.909	68.421	0.00	0.00	43.43	4.02
4340	4422	2.359230	GACCACTGCTGGGCTGTC	60.359	66.667	0.00	0.00	43.43	3.51
4341	4423	3.958860	GGACCACTGCTGGGCTGT	61.959	66.667	0.00	0.00	46.57	4.40
4342	4424	4.729918	GGGACCACTGCTGGGCTG	62.730	72.222	0.00	0.00	46.57	4.85
4393	4475	2.515290	GGTTGTAATCCCGCCCGG	60.515	66.667	0.00	0.00	0.00	5.73
4404	4486	3.463585	CCGGCGGCTAGGGTTGTA	61.464	66.667	15.42	0.00	0.00	2.41
4637	4720	4.741239	ACCCTCCACCATCCGCCT	62.741	66.667	0.00	0.00	0.00	5.52
4713	4803	1.078759	CACCGCTGATCCGAGTTCAC	61.079	60.000	0.00	0.00	0.00	3.18
4717	4807	4.148825	GCCACCGCTGATCCGAGT	62.149	66.667	0.00	0.00	0.00	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.