Multiple sequence alignment - TraesCS4B01G099500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G099500 chr4B 100.000 3047 0 0 1 3047 104807634 104810680 0.000000e+00 5627.0
1 TraesCS4B01G099500 chr4B 97.778 180 4 0 2342 2521 666660338 666660159 8.200000e-81 311.0
2 TraesCS4B01G099500 chr4B 96.111 180 5 1 2342 2521 666696962 666696785 2.970000e-75 292.0
3 TraesCS4B01G099500 chr4B 99.099 111 1 0 1 111 395699538 395699428 1.850000e-47 200.0
4 TraesCS4B01G099500 chr4A 92.506 2255 132 9 111 2340 525738712 525736470 0.000000e+00 3193.0
5 TraesCS4B01G099500 chr4A 95.082 183 7 2 2342 2524 669399250 669399070 1.380000e-73 287.0
6 TraesCS4B01G099500 chr4A 86.992 246 19 7 2595 2834 525736363 525736125 6.480000e-67 265.0
7 TraesCS4B01G099500 chr4A 87.446 231 18 7 2113 2339 525732544 525732321 3.900000e-64 255.0
8 TraesCS4B01G099500 chr4A 91.160 181 16 0 2867 3047 525736020 525735840 2.350000e-61 246.0
9 TraesCS4B01G099500 chr4A 76.012 321 49 16 189 487 152609655 152609341 1.140000e-29 141.0
10 TraesCS4B01G099500 chr4D 92.265 2004 120 16 351 2340 71421578 71419596 0.000000e+00 2809.0
11 TraesCS4B01G099500 chr4D 90.476 210 10 3 111 318 71428114 71427913 5.010000e-68 268.0
12 TraesCS4B01G099500 chr4D 86.250 240 25 4 2103 2339 71415400 71415166 1.400000e-63 254.0
13 TraesCS4B01G099500 chr4D 87.895 190 15 5 2595 2783 71419489 71419307 1.840000e-52 217.0
14 TraesCS4B01G099500 chr5B 97.191 178 3 1 2341 2518 532890292 532890467 1.780000e-77 300.0
15 TraesCS4B01G099500 chr2B 95.652 184 8 0 2342 2525 64891774 64891591 2.300000e-76 296.0
16 TraesCS4B01G099500 chr2B 95.135 185 6 1 2342 2523 508216122 508215938 3.840000e-74 289.0
17 TraesCS4B01G099500 chr2B 99.099 111 1 0 1 111 87373979 87374089 1.850000e-47 200.0
18 TraesCS4B01G099500 chr6B 96.610 177 4 2 2342 2518 624228867 624228693 2.970000e-75 292.0
19 TraesCS4B01G099500 chr6B 99.091 110 1 0 1 110 715062816 715062925 6.660000e-47 198.0
20 TraesCS4B01G099500 chr6B 91.971 137 8 2 1 137 14636038 14635905 4.010000e-44 189.0
21 TraesCS4B01G099500 chr6B 92.500 40 3 0 1818 1857 670979787 670979826 1.180000e-04 58.4
22 TraesCS4B01G099500 chr3B 93.367 196 13 0 2333 2528 477626926 477626731 1.070000e-74 291.0
23 TraesCS4B01G099500 chr3B 97.414 116 2 1 1 115 781093997 781094112 2.400000e-46 196.0
24 TraesCS4B01G099500 chr3B 92.500 40 3 0 1818 1857 751243913 751243952 1.180000e-04 58.4
25 TraesCS4B01G099500 chr6A 95.082 183 8 1 2342 2524 591098974 591098793 1.380000e-73 287.0
26 TraesCS4B01G099500 chr6A 95.833 120 4 1 1 120 593643532 593643650 3.100000e-45 193.0
27 TraesCS4B01G099500 chr7A 99.115 113 0 1 1 112 734218098 734217986 5.150000e-48 202.0
28 TraesCS4B01G099500 chr7B 96.639 119 2 2 1 118 495323446 495323563 2.400000e-46 196.0
29 TraesCS4B01G099500 chr1A 96.491 114 3 1 1 114 535496699 535496811 1.440000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G099500 chr4B 104807634 104810680 3046 False 5627.000000 5627 100.000000 1 3047 1 chr4B.!!$F1 3046
1 TraesCS4B01G099500 chr4A 525732321 525738712 6391 True 989.750000 3193 89.526000 111 3047 4 chr4A.!!$R3 2936
2 TraesCS4B01G099500 chr4D 71415166 71421578 6412 True 1093.333333 2809 88.803333 351 2783 3 chr4D.!!$R2 2432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.109086 CACCAGTGTCTAGGCAGTCG 60.109 60.0 0.42 0.0 0.0 4.18 F
1520 1538 0.036388 GATGAGGACCTGCGTTGGAA 60.036 55.0 0.00 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1593 0.035915 GGAGAGCCAAAGACCAGGAC 60.036 60.0 0.0 0.0 0.0 3.85 R
2437 2468 0.193574 ACAAACCTCTCTCCCCCTGA 59.806 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.884900 CAACCGCGACTAAAGGGG 58.115 61.111 8.23 0.00 45.85 4.79
18 19 1.743995 CAACCGCGACTAAAGGGGG 60.744 63.158 8.23 0.00 44.84 5.40
37 38 2.497770 GGGCTTTAGTCGCGCCTA 59.502 61.111 0.00 0.00 43.29 3.93
38 39 1.069258 GGGCTTTAGTCGCGCCTAT 59.931 57.895 0.00 0.00 43.29 2.57
39 40 0.532196 GGGCTTTAGTCGCGCCTATT 60.532 55.000 0.00 0.00 43.29 1.73
40 41 1.296727 GGCTTTAGTCGCGCCTATTT 58.703 50.000 0.00 0.00 40.62 1.40
41 42 1.003866 GGCTTTAGTCGCGCCTATTTG 60.004 52.381 0.00 0.00 40.62 2.32
42 43 1.003866 GCTTTAGTCGCGCCTATTTGG 60.004 52.381 0.00 0.00 39.35 3.28
43 44 2.277084 CTTTAGTCGCGCCTATTTGGT 58.723 47.619 0.00 0.00 38.35 3.67
44 45 1.930567 TTAGTCGCGCCTATTTGGTC 58.069 50.000 0.00 0.00 38.35 4.02
45 46 0.248743 TAGTCGCGCCTATTTGGTCG 60.249 55.000 0.00 0.00 38.35 4.79
48 49 3.937062 GCGCCTATTTGGTCGCGG 61.937 66.667 6.13 0.00 45.57 6.46
49 50 2.510691 CGCCTATTTGGTCGCGGT 60.511 61.111 6.13 0.00 40.91 5.68
50 51 2.104253 CGCCTATTTGGTCGCGGTT 61.104 57.895 6.13 0.00 40.91 4.44
51 52 1.427819 GCCTATTTGGTCGCGGTTG 59.572 57.895 6.13 0.00 38.35 3.77
52 53 1.427819 CCTATTTGGTCGCGGTTGC 59.572 57.895 6.13 0.00 37.91 4.17
71 72 2.451693 GCAACCGCGACTAATGACA 58.548 52.632 8.23 0.00 0.00 3.58
72 73 0.370273 GCAACCGCGACTAATGACAG 59.630 55.000 8.23 0.00 0.00 3.51
73 74 1.710013 CAACCGCGACTAATGACAGT 58.290 50.000 8.23 0.00 0.00 3.55
74 75 2.066262 CAACCGCGACTAATGACAGTT 58.934 47.619 8.23 0.00 0.00 3.16
75 76 1.710013 ACCGCGACTAATGACAGTTG 58.290 50.000 8.23 0.00 33.66 3.16
77 78 3.858040 GCGACTAATGACAGTTGCG 57.142 52.632 0.01 0.00 44.02 4.85
78 79 1.346365 GCGACTAATGACAGTTGCGA 58.654 50.000 0.01 0.00 44.02 5.10
79 80 1.724623 GCGACTAATGACAGTTGCGAA 59.275 47.619 0.01 0.00 44.02 4.70
80 81 2.472397 GCGACTAATGACAGTTGCGAAC 60.472 50.000 0.01 0.00 44.02 3.95
81 82 2.092211 CGACTAATGACAGTTGCGAACC 59.908 50.000 0.00 0.00 0.00 3.62
82 83 2.066262 ACTAATGACAGTTGCGAACCG 58.934 47.619 0.00 0.00 0.00 4.44
92 93 4.084888 GCGAACCGCGACCAAAGG 62.085 66.667 8.23 0.00 44.55 3.11
93 94 4.084888 CGAACCGCGACCAAAGGC 62.085 66.667 8.23 0.00 44.57 4.35
94 95 3.733960 GAACCGCGACCAAAGGCC 61.734 66.667 8.23 0.00 0.00 5.19
98 99 2.983592 CGCGACCAAAGGCCCTTT 60.984 61.111 1.93 1.93 33.58 3.11
99 100 2.561037 CGCGACCAAAGGCCCTTTT 61.561 57.895 5.84 0.00 30.60 2.27
100 101 1.745890 GCGACCAAAGGCCCTTTTT 59.254 52.632 5.84 0.00 30.60 1.94
101 102 0.319555 GCGACCAAAGGCCCTTTTTC 60.320 55.000 5.84 5.31 30.60 2.29
102 103 0.317160 CGACCAAAGGCCCTTTTTCC 59.683 55.000 5.84 0.00 30.60 3.13
103 104 1.419381 GACCAAAGGCCCTTTTTCCA 58.581 50.000 5.84 0.00 30.60 3.53
104 105 1.070134 GACCAAAGGCCCTTTTTCCAC 59.930 52.381 5.84 0.00 30.60 4.02
105 106 0.396435 CCAAAGGCCCTTTTTCCACC 59.604 55.000 5.84 0.00 30.60 4.61
106 107 1.127343 CAAAGGCCCTTTTTCCACCA 58.873 50.000 5.84 0.00 30.60 4.17
107 108 1.070601 CAAAGGCCCTTTTTCCACCAG 59.929 52.381 5.84 0.00 30.60 4.00
108 109 0.264657 AAGGCCCTTTTTCCACCAGT 59.735 50.000 0.00 0.00 0.00 4.00
109 110 0.469892 AGGCCCTTTTTCCACCAGTG 60.470 55.000 0.00 0.00 0.00 3.66
116 117 2.561478 TTTTCCACCAGTGTCTAGGC 57.439 50.000 0.00 0.00 0.00 3.93
121 122 0.109086 CACCAGTGTCTAGGCAGTCG 60.109 60.000 0.42 0.00 0.00 4.18
135 136 2.286418 GGCAGTCGACTTTGTCTTGTTG 60.286 50.000 17.26 2.30 0.00 3.33
184 185 3.186817 CGTTGTGCTAAACGTAATGGGAA 59.813 43.478 13.99 0.00 46.02 3.97
185 186 4.469552 GTTGTGCTAAACGTAATGGGAAC 58.530 43.478 0.00 0.00 0.00 3.62
212 213 2.177531 CTGCGCATGTGCTTGACC 59.822 61.111 29.79 2.62 39.32 4.02
232 233 4.767255 CTCACCGCCTCTGCCCAC 62.767 72.222 0.00 0.00 0.00 4.61
303 306 1.896220 GTGTGGCTCACATCCTTTGA 58.104 50.000 14.37 0.00 46.32 2.69
343 360 2.545946 GGATATGCTCGCCAGTTCTTTC 59.454 50.000 0.00 0.00 0.00 2.62
345 362 0.326264 ATGCTCGCCAGTTCTTTCCT 59.674 50.000 0.00 0.00 0.00 3.36
368 385 1.760613 CTTGAATGTACCCCGCTAGGA 59.239 52.381 0.00 0.00 41.02 2.94
387 405 5.182169 AGGATTTTTCCCACCGTATTACA 57.818 39.130 0.00 0.00 0.00 2.41
395 413 6.744175 TTCCCACCGTATTACATATTACCA 57.256 37.500 0.00 0.00 0.00 3.25
445 463 3.965379 TTGGCATTTGTCATTGATGCT 57.035 38.095 9.22 0.00 44.19 3.79
475 493 4.704540 CCCAAGCACACCTAAAATCACATA 59.295 41.667 0.00 0.00 0.00 2.29
499 517 1.525442 GGTGCGGCTATAGTTGGGT 59.475 57.895 0.00 0.00 0.00 4.51
503 521 1.440060 CGGCTATAGTTGGGTGCGA 59.560 57.895 0.84 0.00 0.00 5.10
520 538 4.101790 ACGGAGCGCGCCATTTTG 62.102 61.111 29.85 15.30 0.00 2.44
559 577 5.049680 CAGCTATTAGACCGTGTGTTGTTTT 60.050 40.000 0.00 0.00 0.00 2.43
572 590 3.813724 GTGTTGTTTTCTCTCCCCTACAC 59.186 47.826 0.00 0.00 0.00 2.90
574 592 4.065789 GTTGTTTTCTCTCCCCTACACTG 58.934 47.826 0.00 0.00 0.00 3.66
588 606 3.005684 CCTACACTGAATGCTTGCCAAAA 59.994 43.478 0.00 0.00 0.00 2.44
597 615 2.585330 TGCTTGCCAAAAGAGACATGA 58.415 42.857 0.00 0.00 0.00 3.07
731 749 4.707934 TCACACCACAATTCCTCGTATAGA 59.292 41.667 0.00 0.00 0.00 1.98
733 751 4.710375 ACACCACAATTCCTCGTATAGAGT 59.290 41.667 0.00 0.00 45.44 3.24
735 753 6.106673 CACCACAATTCCTCGTATAGAGTTT 58.893 40.000 0.00 0.00 45.44 2.66
744 762 2.040178 CGTATAGAGTTTGGGCTCCCT 58.960 52.381 6.50 0.00 36.20 4.20
754 772 3.011517 GGCTCCCTCCTGAAGGCA 61.012 66.667 0.00 0.00 44.71 4.75
759 777 2.747799 GCTCCCTCCTGAAGGCAATAAG 60.748 54.545 0.00 0.00 44.71 1.73
1228 1246 2.098831 GGCGACGGCAAAGACTACC 61.099 63.158 17.49 0.00 42.47 3.18
1345 1363 2.574399 GGAAGAGGAGCGCGTTCT 59.426 61.111 22.36 10.15 0.00 3.01
1506 1524 3.136750 CCTGCCTCCGAGGATGAG 58.863 66.667 19.33 9.69 37.67 2.90
1520 1538 0.036388 GATGAGGACCTGCGTTGGAA 60.036 55.000 0.00 0.00 0.00 3.53
1616 1634 4.899239 CGAGCTCATGTCGGCCCC 62.899 72.222 15.40 0.00 33.66 5.80
1617 1635 3.785859 GAGCTCATGTCGGCCCCA 61.786 66.667 9.40 0.00 0.00 4.96
1630 1648 2.893398 CCCCAGCCTACGACTGTC 59.107 66.667 0.00 0.00 33.09 3.51
1698 1716 4.389576 CACTGCAAGAACGGCCGC 62.390 66.667 28.58 10.42 37.43 6.53
1752 1770 2.222027 CAGCAGAAGAAAACGGAAGGT 58.778 47.619 0.00 0.00 0.00 3.50
1869 1887 4.047883 ACAAGATGGGTAAGCTATTCCCT 58.952 43.478 17.72 7.17 41.58 4.20
1928 1946 0.320421 GAGCACTCTAACCGCCACAA 60.320 55.000 0.00 0.00 0.00 3.33
1950 1968 3.264450 AGAACGTGGAAAGAATCAGGGAT 59.736 43.478 0.00 0.00 0.00 3.85
1951 1969 3.268023 ACGTGGAAAGAATCAGGGATC 57.732 47.619 0.00 0.00 0.00 3.36
1952 1970 2.205074 CGTGGAAAGAATCAGGGATCG 58.795 52.381 0.00 0.00 0.00 3.69
1975 1993 5.066593 GGAAGAAGAAGTTGAAGGTGATGT 58.933 41.667 0.00 0.00 0.00 3.06
1988 2006 1.609210 TGATGTCTCCCGAGGTGCA 60.609 57.895 0.00 0.00 0.00 4.57
2014 2032 2.736682 CCGGACGCGGATGACAAAC 61.737 63.158 12.47 0.00 0.00 2.93
2049 2067 8.350722 CGAGTCTGTAAATATGAAAGGTAGCTA 58.649 37.037 0.00 0.00 0.00 3.32
2105 2127 2.276201 TGCAAATTCGATTCGTCCGAT 58.724 42.857 5.89 0.00 35.84 4.18
2131 2153 1.407656 GGGCGGTCAGGTCATGGATA 61.408 60.000 0.00 0.00 0.00 2.59
2159 2181 4.327087 GCTTTTTAGATTCGGGCATGTTTG 59.673 41.667 0.00 0.00 0.00 2.93
2163 2185 5.499139 TTAGATTCGGGCATGTTTGATTC 57.501 39.130 0.00 0.00 0.00 2.52
2206 2237 6.611613 TTCATTCAGAGGTAAGATGTCAGT 57.388 37.500 0.00 0.00 0.00 3.41
2238 2269 5.646692 TGTAAATATTAGCAGCTCCCCTT 57.353 39.130 0.00 0.00 0.00 3.95
2318 2349 7.489113 GCTTGGAAAAATTCATGTGATATTCGT 59.511 33.333 0.00 0.00 0.00 3.85
2340 2371 8.251750 TCGTTCTAAATTTGTGTATTCTGAGG 57.748 34.615 0.00 0.00 0.00 3.86
2341 2372 6.961554 CGTTCTAAATTTGTGTATTCTGAGGC 59.038 38.462 0.00 0.00 0.00 4.70
2342 2373 6.662414 TCTAAATTTGTGTATTCTGAGGCG 57.338 37.500 0.00 0.00 0.00 5.52
2343 2374 4.701956 AAATTTGTGTATTCTGAGGCGG 57.298 40.909 0.00 0.00 0.00 6.13
2344 2375 1.448985 TTTGTGTATTCTGAGGCGGC 58.551 50.000 0.00 0.00 0.00 6.53
2345 2376 0.323302 TTGTGTATTCTGAGGCGGCA 59.677 50.000 13.08 0.00 0.00 5.69
2346 2377 0.323302 TGTGTATTCTGAGGCGGCAA 59.677 50.000 13.08 0.00 0.00 4.52
2347 2378 1.065491 TGTGTATTCTGAGGCGGCAAT 60.065 47.619 13.08 4.49 0.00 3.56
2348 2379 1.331756 GTGTATTCTGAGGCGGCAATG 59.668 52.381 13.08 0.00 0.00 2.82
2349 2380 0.308993 GTATTCTGAGGCGGCAATGC 59.691 55.000 13.08 0.00 0.00 3.56
2350 2381 0.181114 TATTCTGAGGCGGCAATGCT 59.819 50.000 13.08 0.00 34.52 3.79
2351 2382 0.181114 ATTCTGAGGCGGCAATGCTA 59.819 50.000 13.08 0.00 34.52 3.49
2352 2383 0.744414 TTCTGAGGCGGCAATGCTAC 60.744 55.000 13.08 0.00 34.52 3.58
2353 2384 1.450134 CTGAGGCGGCAATGCTACA 60.450 57.895 13.08 0.00 34.52 2.74
2354 2385 1.709147 CTGAGGCGGCAATGCTACAC 61.709 60.000 13.08 0.00 34.52 2.90
2355 2386 2.813179 GAGGCGGCAATGCTACACG 61.813 63.158 13.08 0.68 34.52 4.49
2356 2387 3.124921 GGCGGCAATGCTACACGT 61.125 61.111 4.82 0.00 34.52 4.49
2357 2388 1.812093 GGCGGCAATGCTACACGTA 60.812 57.895 4.82 0.00 34.52 3.57
2358 2389 1.347221 GCGGCAATGCTACACGTAC 59.653 57.895 4.82 0.00 0.00 3.67
2359 2390 1.355796 GCGGCAATGCTACACGTACA 61.356 55.000 4.82 0.00 0.00 2.90
2360 2391 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
2361 2392 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
2362 2393 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
2379 2410 7.771219 GTACAAACGATTTACAGGCTTTTAC 57.229 36.000 0.00 0.00 0.00 2.01
2380 2411 6.380095 ACAAACGATTTACAGGCTTTTACA 57.620 33.333 0.00 0.00 0.00 2.41
2381 2412 6.435428 ACAAACGATTTACAGGCTTTTACAG 58.565 36.000 0.00 0.00 0.00 2.74
2382 2413 5.622770 AACGATTTACAGGCTTTTACAGG 57.377 39.130 0.00 0.00 0.00 4.00
2383 2414 4.901868 ACGATTTACAGGCTTTTACAGGA 58.098 39.130 0.00 0.00 0.00 3.86
2384 2415 5.497474 ACGATTTACAGGCTTTTACAGGAT 58.503 37.500 0.00 0.00 0.00 3.24
2385 2416 5.354234 ACGATTTACAGGCTTTTACAGGATG 59.646 40.000 0.00 0.00 46.00 3.51
2386 2417 5.220854 CGATTTACAGGCTTTTACAGGATGG 60.221 44.000 0.00 0.00 43.62 3.51
2387 2418 4.650972 TTACAGGCTTTTACAGGATGGT 57.349 40.909 0.00 0.00 43.62 3.55
2388 2419 3.525800 ACAGGCTTTTACAGGATGGTT 57.474 42.857 0.00 0.00 43.62 3.67
2389 2420 4.650972 ACAGGCTTTTACAGGATGGTTA 57.349 40.909 0.00 0.00 43.62 2.85
2390 2421 4.993028 ACAGGCTTTTACAGGATGGTTAA 58.007 39.130 0.00 0.00 43.62 2.01
2391 2422 5.580022 ACAGGCTTTTACAGGATGGTTAAT 58.420 37.500 0.00 0.00 43.62 1.40
2392 2423 5.652452 ACAGGCTTTTACAGGATGGTTAATC 59.348 40.000 0.00 0.00 43.62 1.75
2393 2424 5.888161 CAGGCTTTTACAGGATGGTTAATCT 59.112 40.000 0.00 0.00 43.62 2.40
2394 2425 6.378280 CAGGCTTTTACAGGATGGTTAATCTT 59.622 38.462 0.00 0.00 43.62 2.40
2395 2426 6.378280 AGGCTTTTACAGGATGGTTAATCTTG 59.622 38.462 0.00 0.00 45.55 3.02
2396 2427 6.377146 GGCTTTTACAGGATGGTTAATCTTGA 59.623 38.462 4.67 0.00 43.40 3.02
2397 2428 7.068716 GGCTTTTACAGGATGGTTAATCTTGAT 59.931 37.037 4.67 0.00 43.40 2.57
2398 2429 8.470002 GCTTTTACAGGATGGTTAATCTTGATT 58.530 33.333 4.67 1.35 43.40 2.57
2402 2433 9.832445 TTACAGGATGGTTAATCTTGATTAGTC 57.168 33.333 4.67 2.63 43.40 2.59
2403 2434 7.861629 ACAGGATGGTTAATCTTGATTAGTCA 58.138 34.615 4.67 6.66 43.40 3.41
2404 2435 8.328758 ACAGGATGGTTAATCTTGATTAGTCAA 58.671 33.333 0.34 0.34 43.40 3.18
2405 2436 9.347240 CAGGATGGTTAATCTTGATTAGTCAAT 57.653 33.333 0.64 0.00 43.40 2.57
2410 2441 9.613428 TGGTTAATCTTGATTAGTCAATAGGTG 57.387 33.333 0.64 0.00 43.08 4.00
2411 2442 9.832445 GGTTAATCTTGATTAGTCAATAGGTGA 57.168 33.333 0.64 0.00 43.08 4.02
2413 2444 9.547753 TTAATCTTGATTAGTCAATAGGTGAGC 57.452 33.333 0.64 0.00 43.08 4.26
2414 2445 5.592054 TCTTGATTAGTCAATAGGTGAGCG 58.408 41.667 0.64 0.00 43.08 5.03
2415 2446 4.322080 TGATTAGTCAATAGGTGAGCGG 57.678 45.455 0.00 0.00 36.74 5.52
2416 2447 3.069586 TGATTAGTCAATAGGTGAGCGGG 59.930 47.826 0.00 0.00 36.74 6.13
2417 2448 1.410004 TAGTCAATAGGTGAGCGGGG 58.590 55.000 0.00 0.00 36.74 5.73
2418 2449 1.523938 GTCAATAGGTGAGCGGGGC 60.524 63.158 0.00 0.00 36.74 5.80
2419 2450 2.588877 CAATAGGTGAGCGGGGCG 60.589 66.667 0.00 0.00 0.00 6.13
2420 2451 3.861797 AATAGGTGAGCGGGGCGG 61.862 66.667 0.00 0.00 0.00 6.13
2450 2481 3.557228 CTGAAAATCAGGGGGAGAGAG 57.443 52.381 0.00 0.00 40.71 3.20
2451 2482 2.172293 CTGAAAATCAGGGGGAGAGAGG 59.828 54.545 0.00 0.00 40.71 3.69
2452 2483 2.200955 GAAAATCAGGGGGAGAGAGGT 58.799 52.381 0.00 0.00 0.00 3.85
2453 2484 2.367947 AAATCAGGGGGAGAGAGGTT 57.632 50.000 0.00 0.00 0.00 3.50
2454 2485 2.367947 AATCAGGGGGAGAGAGGTTT 57.632 50.000 0.00 0.00 0.00 3.27
2455 2486 1.589414 ATCAGGGGGAGAGAGGTTTG 58.411 55.000 0.00 0.00 0.00 2.93
2456 2487 0.193574 TCAGGGGGAGAGAGGTTTGT 59.806 55.000 0.00 0.00 0.00 2.83
2457 2488 0.326264 CAGGGGGAGAGAGGTTTGTG 59.674 60.000 0.00 0.00 0.00 3.33
2458 2489 0.193574 AGGGGGAGAGAGGTTTGTGA 59.806 55.000 0.00 0.00 0.00 3.58
2459 2490 1.203492 AGGGGGAGAGAGGTTTGTGAT 60.203 52.381 0.00 0.00 0.00 3.06
2460 2491 1.636003 GGGGGAGAGAGGTTTGTGATT 59.364 52.381 0.00 0.00 0.00 2.57
2461 2492 2.619074 GGGGGAGAGAGGTTTGTGATTG 60.619 54.545 0.00 0.00 0.00 2.67
2462 2493 2.619074 GGGGAGAGAGGTTTGTGATTGG 60.619 54.545 0.00 0.00 0.00 3.16
2463 2494 2.040412 GGGAGAGAGGTTTGTGATTGGT 59.960 50.000 0.00 0.00 0.00 3.67
2464 2495 3.498661 GGGAGAGAGGTTTGTGATTGGTT 60.499 47.826 0.00 0.00 0.00 3.67
2465 2496 3.503748 GGAGAGAGGTTTGTGATTGGTTG 59.496 47.826 0.00 0.00 0.00 3.77
2466 2497 4.137543 GAGAGAGGTTTGTGATTGGTTGT 58.862 43.478 0.00 0.00 0.00 3.32
2467 2498 4.536765 AGAGAGGTTTGTGATTGGTTGTT 58.463 39.130 0.00 0.00 0.00 2.83
2468 2499 5.690865 AGAGAGGTTTGTGATTGGTTGTTA 58.309 37.500 0.00 0.00 0.00 2.41
2469 2500 5.765182 AGAGAGGTTTGTGATTGGTTGTTAG 59.235 40.000 0.00 0.00 0.00 2.34
2470 2501 5.690865 AGAGGTTTGTGATTGGTTGTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
2471 2502 6.306987 AGAGGTTTGTGATTGGTTGTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
2472 2503 6.207417 AGAGGTTTGTGATTGGTTGTTAGATG 59.793 38.462 0.00 0.00 0.00 2.90
2473 2504 5.243730 AGGTTTGTGATTGGTTGTTAGATGG 59.756 40.000 0.00 0.00 0.00 3.51
2474 2505 5.242838 GGTTTGTGATTGGTTGTTAGATGGA 59.757 40.000 0.00 0.00 0.00 3.41
2475 2506 6.239176 GGTTTGTGATTGGTTGTTAGATGGAA 60.239 38.462 0.00 0.00 0.00 3.53
2476 2507 6.573664 TTGTGATTGGTTGTTAGATGGAAG 57.426 37.500 0.00 0.00 0.00 3.46
2477 2508 5.009631 TGTGATTGGTTGTTAGATGGAAGG 58.990 41.667 0.00 0.00 0.00 3.46
2478 2509 5.222027 TGTGATTGGTTGTTAGATGGAAGGA 60.222 40.000 0.00 0.00 0.00 3.36
2479 2510 5.355350 GTGATTGGTTGTTAGATGGAAGGAG 59.645 44.000 0.00 0.00 0.00 3.69
2480 2511 3.350219 TGGTTGTTAGATGGAAGGAGC 57.650 47.619 0.00 0.00 0.00 4.70
2481 2512 2.280628 GGTTGTTAGATGGAAGGAGCG 58.719 52.381 0.00 0.00 0.00 5.03
2482 2513 2.354805 GGTTGTTAGATGGAAGGAGCGT 60.355 50.000 0.00 0.00 0.00 5.07
2483 2514 2.672961 TGTTAGATGGAAGGAGCGTG 57.327 50.000 0.00 0.00 0.00 5.34
2484 2515 1.899814 TGTTAGATGGAAGGAGCGTGT 59.100 47.619 0.00 0.00 0.00 4.49
2485 2516 3.093814 TGTTAGATGGAAGGAGCGTGTA 58.906 45.455 0.00 0.00 0.00 2.90
2486 2517 3.512329 TGTTAGATGGAAGGAGCGTGTAA 59.488 43.478 0.00 0.00 0.00 2.41
2487 2518 4.020928 TGTTAGATGGAAGGAGCGTGTAAA 60.021 41.667 0.00 0.00 0.00 2.01
2488 2519 3.695830 AGATGGAAGGAGCGTGTAAAA 57.304 42.857 0.00 0.00 0.00 1.52
2489 2520 3.600388 AGATGGAAGGAGCGTGTAAAAG 58.400 45.455 0.00 0.00 0.00 2.27
2490 2521 1.519408 TGGAAGGAGCGTGTAAAAGC 58.481 50.000 0.00 0.00 0.00 3.51
2491 2522 0.442699 GGAAGGAGCGTGTAAAAGCG 59.557 55.000 0.00 0.00 38.61 4.68
2492 2523 1.145803 GAAGGAGCGTGTAAAAGCGT 58.854 50.000 0.00 0.00 38.61 5.07
2493 2524 0.865769 AAGGAGCGTGTAAAAGCGTG 59.134 50.000 0.00 0.00 38.61 5.34
2494 2525 0.249741 AGGAGCGTGTAAAAGCGTGT 60.250 50.000 0.00 0.00 38.61 4.49
2495 2526 1.000060 AGGAGCGTGTAAAAGCGTGTA 60.000 47.619 0.00 0.00 38.61 2.90
2496 2527 1.794116 GGAGCGTGTAAAAGCGTGTAA 59.206 47.619 0.00 0.00 38.61 2.41
2497 2528 2.221517 GGAGCGTGTAAAAGCGTGTAAA 59.778 45.455 0.00 0.00 38.61 2.01
2498 2529 3.120442 GGAGCGTGTAAAAGCGTGTAAAT 60.120 43.478 0.00 0.00 38.61 1.40
2499 2530 4.061570 AGCGTGTAAAAGCGTGTAAATC 57.938 40.909 0.00 0.00 38.61 2.17
2500 2531 3.744426 AGCGTGTAAAAGCGTGTAAATCT 59.256 39.130 0.00 0.00 38.61 2.40
2501 2532 4.212636 AGCGTGTAAAAGCGTGTAAATCTT 59.787 37.500 0.00 0.00 38.61 2.40
2502 2533 4.907582 GCGTGTAAAAGCGTGTAAATCTTT 59.092 37.500 0.00 0.00 0.00 2.52
2503 2534 5.164320 GCGTGTAAAAGCGTGTAAATCTTTG 60.164 40.000 0.00 0.00 31.21 2.77
2504 2535 5.905181 CGTGTAAAAGCGTGTAAATCTTTGT 59.095 36.000 0.00 0.00 31.21 2.83
2505 2536 7.064674 CGTGTAAAAGCGTGTAAATCTTTGTA 58.935 34.615 0.00 0.00 31.21 2.41
2506 2537 7.742963 CGTGTAAAAGCGTGTAAATCTTTGTAT 59.257 33.333 0.00 0.00 31.21 2.29
2507 2538 8.837059 GTGTAAAAGCGTGTAAATCTTTGTATG 58.163 33.333 0.00 0.00 31.21 2.39
2508 2539 8.561212 TGTAAAAGCGTGTAAATCTTTGTATGT 58.439 29.630 0.00 0.00 31.21 2.29
2509 2540 9.047871 GTAAAAGCGTGTAAATCTTTGTATGTC 57.952 33.333 0.00 0.00 31.21 3.06
2510 2541 7.435068 AAAGCGTGTAAATCTTTGTATGTCT 57.565 32.000 0.00 0.00 0.00 3.41
2511 2542 8.542497 AAAGCGTGTAAATCTTTGTATGTCTA 57.458 30.769 0.00 0.00 0.00 2.59
2512 2543 7.757097 AGCGTGTAAATCTTTGTATGTCTAG 57.243 36.000 0.00 0.00 0.00 2.43
2513 2544 6.255887 AGCGTGTAAATCTTTGTATGTCTAGC 59.744 38.462 0.00 0.00 0.00 3.42
2514 2545 6.035650 GCGTGTAAATCTTTGTATGTCTAGCA 59.964 38.462 0.00 0.00 0.00 3.49
2515 2546 7.254455 GCGTGTAAATCTTTGTATGTCTAGCAT 60.254 37.037 5.25 5.25 41.42 3.79
2516 2547 8.604035 CGTGTAAATCTTTGTATGTCTAGCATT 58.396 33.333 5.22 0.00 38.94 3.56
2521 2552 9.453572 AAATCTTTGTATGTCTAGCATTTCTGA 57.546 29.630 5.22 1.00 38.94 3.27
2522 2553 9.624373 AATCTTTGTATGTCTAGCATTTCTGAT 57.376 29.630 5.22 2.71 38.94 2.90
2523 2554 9.624373 ATCTTTGTATGTCTAGCATTTCTGATT 57.376 29.630 5.22 0.00 38.94 2.57
2524 2555 9.102757 TCTTTGTATGTCTAGCATTTCTGATTC 57.897 33.333 5.22 0.00 38.94 2.52
2525 2556 9.107177 CTTTGTATGTCTAGCATTTCTGATTCT 57.893 33.333 5.22 0.00 38.94 2.40
2526 2557 8.429493 TTGTATGTCTAGCATTTCTGATTCTG 57.571 34.615 5.22 0.00 38.94 3.02
2527 2558 7.785033 TGTATGTCTAGCATTTCTGATTCTGA 58.215 34.615 5.22 0.00 38.94 3.27
2528 2559 7.924947 TGTATGTCTAGCATTTCTGATTCTGAG 59.075 37.037 5.22 0.00 38.94 3.35
2529 2560 5.668471 TGTCTAGCATTTCTGATTCTGAGG 58.332 41.667 0.00 0.00 0.00 3.86
2549 2580 5.889853 TGAGGCATTTGAGAATCTAAAGCAT 59.110 36.000 4.23 0.00 44.11 3.79
2553 2584 6.238842 GGCATTTGAGAATCTAAAGCATGCTA 60.239 38.462 23.00 5.30 44.11 3.49
2567 2598 2.627945 CATGCTAAAAGCGTACCCTGA 58.372 47.619 0.00 0.00 46.26 3.86
2627 2699 0.031817 CTGGGAGGGGATGGCAAATT 60.032 55.000 0.00 0.00 0.00 1.82
2635 2707 3.588396 AGGGGATGGCAAATTGAATGTTT 59.412 39.130 0.00 0.00 0.00 2.83
2672 2744 9.762381 GAATTTATATTATCCCATGGGTGGTAA 57.238 33.333 30.28 24.32 44.48 2.85
2780 2852 7.371126 TCTATGCAAATCGTTCACAATTGTA 57.629 32.000 11.53 0.00 0.00 2.41
2788 2876 9.986833 CAAATCGTTCACAATTGTATAAGATGA 57.013 29.630 11.53 6.23 0.00 2.92
2833 2942 8.054152 TGCAGAAATTAATGTGAAAGCTATCA 57.946 30.769 0.00 0.00 0.00 2.15
2834 2943 8.186163 TGCAGAAATTAATGTGAAAGCTATCAG 58.814 33.333 0.00 0.00 0.00 2.90
2835 2944 7.167136 GCAGAAATTAATGTGAAAGCTATCAGC 59.833 37.037 0.00 0.00 42.84 4.26
2853 2962 9.145865 GCTATCAGCTTTGGTATCTTATTCTAC 57.854 37.037 0.00 0.00 38.45 2.59
2958 3151 4.813161 CCATTTGCTTCGACAGTGAGATAT 59.187 41.667 0.00 0.00 0.00 1.63
2967 3160 7.307632 GCTTCGACAGTGAGATATTTTGCATAT 60.308 37.037 0.00 0.00 0.00 1.78
2968 3161 7.412137 TCGACAGTGAGATATTTTGCATATG 57.588 36.000 0.00 0.00 0.00 1.78
2971 3164 8.430828 CGACAGTGAGATATTTTGCATATGTAG 58.569 37.037 4.29 0.00 0.00 2.74
2992 3185 6.666546 TGTAGTATAGAAGGTACCAGCTTTGT 59.333 38.462 15.94 0.27 35.86 2.83
2993 3186 6.223351 AGTATAGAAGGTACCAGCTTTGTC 57.777 41.667 15.94 0.00 35.86 3.18
3002 3195 2.838736 ACCAGCTTTGTCTGTGTACAG 58.161 47.619 5.67 5.67 45.08 2.74
3021 3214 7.066284 GTGTACAGCTCCAGATGTGAAATTTAT 59.934 37.037 7.74 0.00 45.12 1.40
3023 3216 6.182627 ACAGCTCCAGATGTGAAATTTATGA 58.817 36.000 0.00 0.00 43.73 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.743995 CCCCCTTTAGTCGCGGTTG 60.744 63.158 6.13 0.00 0.00 3.77
1 2 2.666812 CCCCCTTTAGTCGCGGTT 59.333 61.111 6.13 0.00 0.00 4.44
22 23 1.003866 CCAAATAGGCGCGACTAAAGC 60.004 52.381 28.10 0.00 0.00 3.51
23 24 2.277084 ACCAAATAGGCGCGACTAAAG 58.723 47.619 28.10 17.87 43.14 1.85
24 25 2.273557 GACCAAATAGGCGCGACTAAA 58.726 47.619 28.10 6.26 43.14 1.85
25 26 1.799917 CGACCAAATAGGCGCGACTAA 60.800 52.381 28.10 9.87 43.14 2.24
26 27 0.248743 CGACCAAATAGGCGCGACTA 60.249 55.000 26.49 26.49 43.14 2.59
27 28 1.518572 CGACCAAATAGGCGCGACT 60.519 57.895 22.96 22.96 43.14 4.18
28 29 3.003478 CGACCAAATAGGCGCGAC 58.997 61.111 12.10 7.34 43.14 5.19
29 30 2.888534 GCGACCAAATAGGCGCGA 60.889 61.111 12.10 0.00 46.90 5.87
33 34 1.427819 CAACCGCGACCAAATAGGC 59.572 57.895 8.23 0.00 43.14 3.93
34 35 1.427819 GCAACCGCGACCAAATAGG 59.572 57.895 8.23 0.00 45.67 2.57
53 54 0.370273 CTGTCATTAGTCGCGGTTGC 59.630 55.000 6.13 0.00 37.91 4.17
54 55 1.710013 ACTGTCATTAGTCGCGGTTG 58.290 50.000 6.13 0.00 0.00 3.77
55 56 2.066262 CAACTGTCATTAGTCGCGGTT 58.934 47.619 6.13 0.00 0.00 4.44
56 57 1.710013 CAACTGTCATTAGTCGCGGT 58.290 50.000 6.13 0.00 0.00 5.68
57 58 0.370273 GCAACTGTCATTAGTCGCGG 59.630 55.000 6.13 0.00 0.00 6.46
58 59 0.023732 CGCAACTGTCATTAGTCGCG 59.976 55.000 0.00 0.00 45.94 5.87
59 60 1.346365 TCGCAACTGTCATTAGTCGC 58.654 50.000 0.00 0.00 0.00 5.19
60 61 2.092211 GGTTCGCAACTGTCATTAGTCG 59.908 50.000 0.00 0.00 0.00 4.18
61 62 2.092211 CGGTTCGCAACTGTCATTAGTC 59.908 50.000 0.00 0.00 33.03 2.59
62 63 2.066262 CGGTTCGCAACTGTCATTAGT 58.934 47.619 0.00 0.00 33.03 2.24
63 64 2.787723 CGGTTCGCAACTGTCATTAG 57.212 50.000 0.00 0.00 33.03 1.73
76 77 4.084888 GCCTTTGGTCGCGGTTCG 62.085 66.667 6.13 0.00 40.15 3.95
77 78 3.733960 GGCCTTTGGTCGCGGTTC 61.734 66.667 6.13 0.00 0.00 3.62
81 82 2.082629 AAAAAGGGCCTTTGGTCGCG 62.083 55.000 31.06 0.00 33.64 5.87
82 83 0.319555 GAAAAAGGGCCTTTGGTCGC 60.320 55.000 31.06 14.98 33.64 5.19
83 84 0.317160 GGAAAAAGGGCCTTTGGTCG 59.683 55.000 31.06 0.00 33.64 4.79
84 85 1.070134 GTGGAAAAAGGGCCTTTGGTC 59.930 52.381 31.06 27.31 33.64 4.02
85 86 1.128200 GTGGAAAAAGGGCCTTTGGT 58.872 50.000 31.06 21.81 33.64 3.67
86 87 0.396435 GGTGGAAAAAGGGCCTTTGG 59.604 55.000 31.06 0.00 33.64 3.28
87 88 1.070601 CTGGTGGAAAAAGGGCCTTTG 59.929 52.381 31.06 12.80 33.64 2.77
88 89 1.343985 ACTGGTGGAAAAAGGGCCTTT 60.344 47.619 25.68 25.68 34.94 3.11
89 90 0.264657 ACTGGTGGAAAAAGGGCCTT 59.735 50.000 14.48 14.48 0.00 4.35
90 91 0.469892 CACTGGTGGAAAAAGGGCCT 60.470 55.000 0.00 0.00 0.00 5.19
91 92 0.759060 ACACTGGTGGAAAAAGGGCC 60.759 55.000 0.00 0.00 34.19 5.80
92 93 0.673985 GACACTGGTGGAAAAAGGGC 59.326 55.000 5.70 0.00 34.19 5.19
93 94 2.364972 AGACACTGGTGGAAAAAGGG 57.635 50.000 5.70 0.00 34.19 3.95
94 95 3.412386 CCTAGACACTGGTGGAAAAAGG 58.588 50.000 5.70 1.71 34.19 3.11
95 96 2.814336 GCCTAGACACTGGTGGAAAAAG 59.186 50.000 5.70 0.00 34.19 2.27
96 97 2.173782 TGCCTAGACACTGGTGGAAAAA 59.826 45.455 5.70 0.00 34.19 1.94
97 98 1.771854 TGCCTAGACACTGGTGGAAAA 59.228 47.619 5.70 0.00 34.19 2.29
98 99 1.347707 CTGCCTAGACACTGGTGGAAA 59.652 52.381 5.70 0.00 34.19 3.13
99 100 0.976641 CTGCCTAGACACTGGTGGAA 59.023 55.000 5.70 0.00 34.19 3.53
100 101 0.178932 ACTGCCTAGACACTGGTGGA 60.179 55.000 5.70 0.00 34.19 4.02
101 102 0.247736 GACTGCCTAGACACTGGTGG 59.752 60.000 5.70 0.00 34.19 4.61
102 103 0.109086 CGACTGCCTAGACACTGGTG 60.109 60.000 0.00 0.00 0.00 4.17
103 104 0.251209 TCGACTGCCTAGACACTGGT 60.251 55.000 0.00 0.00 0.00 4.00
104 105 0.171455 GTCGACTGCCTAGACACTGG 59.829 60.000 8.70 0.00 35.19 4.00
105 106 1.169577 AGTCGACTGCCTAGACACTG 58.830 55.000 19.30 0.00 37.36 3.66
106 107 1.912417 AAGTCGACTGCCTAGACACT 58.088 50.000 20.85 0.00 37.36 3.55
107 108 2.288273 ACAAAGTCGACTGCCTAGACAC 60.288 50.000 20.85 0.00 37.36 3.67
108 109 1.961394 ACAAAGTCGACTGCCTAGACA 59.039 47.619 20.85 0.00 37.36 3.41
109 110 2.229302 AGACAAAGTCGACTGCCTAGAC 59.771 50.000 20.85 7.91 37.67 2.59
116 117 2.286418 GGCAACAAGACAAAGTCGACTG 60.286 50.000 20.85 11.25 37.67 3.51
121 122 2.918131 GCATCGGCAACAAGACAAAGTC 60.918 50.000 0.00 0.00 40.72 3.01
135 136 2.012237 CAGACATCAGTGCATCGGC 58.988 57.895 0.00 0.00 41.68 5.54
202 203 2.280797 GTGAGGCGGTCAAGCACA 60.281 61.111 0.00 0.00 36.74 4.57
232 233 7.462069 CGTCTGATCAGAAGTCTATTCAAAACG 60.462 40.741 26.70 16.44 39.48 3.60
301 304 3.317150 CGCTTAACACACATGACTCTCA 58.683 45.455 0.00 0.00 0.00 3.27
303 306 2.299013 TCCGCTTAACACACATGACTCT 59.701 45.455 0.00 0.00 0.00 3.24
334 351 6.073003 GGTACATTCAAGACAGGAAAGAACTG 60.073 42.308 0.00 0.00 41.64 3.16
343 360 2.012051 GCGGGGTACATTCAAGACAGG 61.012 57.143 0.00 0.00 0.00 4.00
345 362 0.981183 AGCGGGGTACATTCAAGACA 59.019 50.000 0.00 0.00 0.00 3.41
368 385 9.070179 GGTAATATGTAATACGGTGGGAAAAAT 57.930 33.333 0.00 0.00 0.00 1.82
404 422 5.870433 CCAATGCACAAGCTCAATAAATCAA 59.130 36.000 0.00 0.00 42.74 2.57
475 493 1.054406 ACTATAGCCGCACCCACCAT 61.054 55.000 0.00 0.00 0.00 3.55
503 521 4.101790 CAAAATGGCGCGCTCCGT 62.102 61.111 32.29 14.08 39.71 4.69
540 558 5.365619 AGAGAAAACAACACACGGTCTAAT 58.634 37.500 0.00 0.00 0.00 1.73
559 577 2.111384 GCATTCAGTGTAGGGGAGAGA 58.889 52.381 0.00 0.00 0.00 3.10
572 590 3.005050 TGTCTCTTTTGGCAAGCATTCAG 59.995 43.478 0.00 0.00 0.00 3.02
574 592 3.648339 TGTCTCTTTTGGCAAGCATTC 57.352 42.857 0.00 0.00 0.00 2.67
588 606 1.039068 AGCTAGCGCATCATGTCTCT 58.961 50.000 11.47 0.00 39.10 3.10
703 721 3.070018 GAGGAATTGTGGTGTGACAGAG 58.930 50.000 0.00 0.00 0.00 3.35
731 749 0.772124 TTCAGGAGGGAGCCCAAACT 60.772 55.000 8.53 0.00 38.92 2.66
733 751 1.500783 CCTTCAGGAGGGAGCCCAAA 61.501 60.000 8.53 0.00 42.26 3.28
735 753 2.285668 CCTTCAGGAGGGAGCCCA 60.286 66.667 8.53 0.00 42.26 5.36
744 762 2.425143 CCTGCTTATTGCCTTCAGGA 57.575 50.000 0.00 0.00 45.31 3.86
754 772 2.193248 GCCGGCCTCCTGCTTATT 59.807 61.111 18.11 0.00 40.92 1.40
1125 1143 0.737219 ACACGTAGCCTATGACCGTC 59.263 55.000 0.00 0.00 0.00 4.79
1236 1254 4.713735 TTCATGCCCGCCAGCGAA 62.714 61.111 14.67 0.00 42.83 4.70
1286 1304 1.284785 CAGAGAGAGACAGAGGTCCCT 59.715 57.143 0.00 0.00 45.48 4.20
1288 1306 2.365582 GTCAGAGAGAGACAGAGGTCC 58.634 57.143 0.00 0.00 45.48 4.46
1345 1363 2.336554 GGCTTACTGTCGAACACGTA 57.663 50.000 0.00 0.00 0.00 3.57
1498 1516 0.460987 CAACGCAGGTCCTCATCCTC 60.461 60.000 0.00 0.00 32.37 3.71
1506 1524 0.388520 GCAAATTCCAACGCAGGTCC 60.389 55.000 0.00 0.00 0.00 4.46
1520 1538 3.134127 GCGGCTTCCTCGGCAAAT 61.134 61.111 0.00 0.00 33.24 2.32
1570 1588 1.833787 GCCAAAGACCAGGACGGGTA 61.834 60.000 0.00 0.00 42.53 3.69
1571 1589 3.157680 CCAAAGACCAGGACGGGT 58.842 61.111 0.00 0.00 46.02 5.28
1572 1590 2.359975 GCCAAAGACCAGGACGGG 60.360 66.667 0.00 0.00 40.22 5.28
1573 1591 1.376037 GAGCCAAAGACCAGGACGG 60.376 63.158 0.00 0.00 42.50 4.79
1574 1592 0.390472 GAGAGCCAAAGACCAGGACG 60.390 60.000 0.00 0.00 0.00 4.79
1575 1593 0.035915 GGAGAGCCAAAGACCAGGAC 60.036 60.000 0.00 0.00 0.00 3.85
1600 1618 3.746949 CTGGGGCCGACATGAGCTC 62.747 68.421 6.82 6.82 0.00 4.09
1630 1648 1.794151 TTGGCAATGCTGTCACCGTG 61.794 55.000 4.82 0.00 36.73 4.94
1643 1661 0.653636 GTCTTTGTCGTCGTTGGCAA 59.346 50.000 0.00 0.00 0.00 4.52
1726 1744 2.268076 TTTTCTTCTGCTGCCGCCC 61.268 57.895 0.00 0.00 34.43 6.13
1869 1887 3.434319 GTCGACGGGCGGTACTCA 61.434 66.667 2.16 0.00 41.33 3.41
1893 1911 1.760268 GCTCGAGGCTGCTGAAATCG 61.760 60.000 15.58 2.81 38.06 3.34
1896 1914 1.669115 GTGCTCGAGGCTGCTGAAA 60.669 57.895 15.58 0.00 42.39 2.69
1928 1946 2.637872 TCCCTGATTCTTTCCACGTTCT 59.362 45.455 0.00 0.00 0.00 3.01
1950 1968 3.386726 TCACCTTCAACTTCTTCTTCCGA 59.613 43.478 0.00 0.00 0.00 4.55
1951 1969 3.728845 TCACCTTCAACTTCTTCTTCCG 58.271 45.455 0.00 0.00 0.00 4.30
1952 1970 5.066593 ACATCACCTTCAACTTCTTCTTCC 58.933 41.667 0.00 0.00 0.00 3.46
1963 1981 1.550524 CTCGGGAGACATCACCTTCAA 59.449 52.381 0.00 0.00 33.60 2.69
1975 1993 2.997315 CACCTGCACCTCGGGAGA 60.997 66.667 0.00 0.00 44.37 3.71
2114 2136 1.040646 TCTATCCATGACCTGACCGC 58.959 55.000 0.00 0.00 0.00 5.68
2131 2153 4.016444 TGCCCGAATCTAAAAAGCAATCT 58.984 39.130 0.00 0.00 0.00 2.40
2228 2259 2.673523 CCACCTGAAGGGGAGCTG 59.326 66.667 0.00 0.00 42.67 4.24
2235 2266 1.379044 GCATCCACCCACCTGAAGG 60.379 63.158 0.00 0.00 42.17 3.46
2238 2269 1.074775 GTTGCATCCACCCACCTGA 59.925 57.895 0.00 0.00 0.00 3.86
2272 2303 1.982223 CGAAACTGAAGAGAGCGACAG 59.018 52.381 0.00 0.00 36.58 3.51
2318 2349 6.093495 CCGCCTCAGAATACACAAATTTAGAA 59.907 38.462 0.00 0.00 0.00 2.10
2340 2371 1.347221 GTACGTGTAGCATTGCCGC 59.653 57.895 4.70 0.00 0.00 6.53
2341 2372 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
2342 2373 2.723618 CGTTTGTACGTGTAGCATTGCC 60.724 50.000 4.70 0.00 42.72 4.52
2343 2374 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
2355 2386 7.354257 TGTAAAAGCCTGTAAATCGTTTGTAC 58.646 34.615 0.00 0.00 0.00 2.90
2356 2387 7.308109 CCTGTAAAAGCCTGTAAATCGTTTGTA 60.308 37.037 0.00 0.00 0.00 2.41
2357 2388 6.380095 TGTAAAAGCCTGTAAATCGTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
2358 2389 5.856455 CCTGTAAAAGCCTGTAAATCGTTTG 59.144 40.000 0.00 0.00 0.00 2.93
2359 2390 5.766174 TCCTGTAAAAGCCTGTAAATCGTTT 59.234 36.000 0.00 0.00 0.00 3.60
2360 2391 5.310451 TCCTGTAAAAGCCTGTAAATCGTT 58.690 37.500 0.00 0.00 0.00 3.85
2361 2392 4.901868 TCCTGTAAAAGCCTGTAAATCGT 58.098 39.130 0.00 0.00 0.00 3.73
2362 2393 5.220854 CCATCCTGTAAAAGCCTGTAAATCG 60.221 44.000 0.00 0.00 0.00 3.34
2363 2394 5.652452 ACCATCCTGTAAAAGCCTGTAAATC 59.348 40.000 0.00 0.00 0.00 2.17
2364 2395 5.580022 ACCATCCTGTAAAAGCCTGTAAAT 58.420 37.500 0.00 0.00 0.00 1.40
2365 2396 4.993028 ACCATCCTGTAAAAGCCTGTAAA 58.007 39.130 0.00 0.00 0.00 2.01
2366 2397 4.650972 ACCATCCTGTAAAAGCCTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
2367 2398 4.650972 AACCATCCTGTAAAAGCCTGTA 57.349 40.909 0.00 0.00 0.00 2.74
2368 2399 3.525800 AACCATCCTGTAAAAGCCTGT 57.474 42.857 0.00 0.00 0.00 4.00
2369 2400 5.888161 AGATTAACCATCCTGTAAAAGCCTG 59.112 40.000 0.00 0.00 31.20 4.85
2370 2401 6.079712 AGATTAACCATCCTGTAAAAGCCT 57.920 37.500 0.00 0.00 31.20 4.58
2371 2402 6.377146 TCAAGATTAACCATCCTGTAAAAGCC 59.623 38.462 0.00 0.00 31.20 4.35
2372 2403 7.391148 TCAAGATTAACCATCCTGTAAAAGC 57.609 36.000 0.00 0.00 31.20 3.51
2376 2407 9.832445 GACTAATCAAGATTAACCATCCTGTAA 57.168 33.333 4.28 0.00 33.34 2.41
2377 2408 8.988060 TGACTAATCAAGATTAACCATCCTGTA 58.012 33.333 4.28 0.00 33.34 2.74
2378 2409 7.861629 TGACTAATCAAGATTAACCATCCTGT 58.138 34.615 4.28 0.00 33.34 4.00
2379 2410 8.737168 TTGACTAATCAAGATTAACCATCCTG 57.263 34.615 4.28 0.00 40.01 3.86
2394 2425 3.069586 CCCGCTCACCTATTGACTAATCA 59.930 47.826 0.00 0.00 0.00 2.57
2395 2426 3.555168 CCCCGCTCACCTATTGACTAATC 60.555 52.174 0.00 0.00 0.00 1.75
2396 2427 2.368875 CCCCGCTCACCTATTGACTAAT 59.631 50.000 0.00 0.00 0.00 1.73
2397 2428 1.760613 CCCCGCTCACCTATTGACTAA 59.239 52.381 0.00 0.00 0.00 2.24
2398 2429 1.410004 CCCCGCTCACCTATTGACTA 58.590 55.000 0.00 0.00 0.00 2.59
2399 2430 1.972660 GCCCCGCTCACCTATTGACT 61.973 60.000 0.00 0.00 0.00 3.41
2400 2431 1.523938 GCCCCGCTCACCTATTGAC 60.524 63.158 0.00 0.00 0.00 3.18
2401 2432 2.908015 GCCCCGCTCACCTATTGA 59.092 61.111 0.00 0.00 0.00 2.57
2402 2433 2.588877 CGCCCCGCTCACCTATTG 60.589 66.667 0.00 0.00 0.00 1.90
2403 2434 3.861797 CCGCCCCGCTCACCTATT 61.862 66.667 0.00 0.00 0.00 1.73
2430 2461 2.172293 CCTCTCTCCCCCTGATTTTCAG 59.828 54.545 0.00 0.00 43.91 3.02
2431 2462 2.200081 CCTCTCTCCCCCTGATTTTCA 58.800 52.381 0.00 0.00 0.00 2.69
2432 2463 2.200955 ACCTCTCTCCCCCTGATTTTC 58.799 52.381 0.00 0.00 0.00 2.29
2433 2464 2.367947 ACCTCTCTCCCCCTGATTTT 57.632 50.000 0.00 0.00 0.00 1.82
2434 2465 2.310052 CAAACCTCTCTCCCCCTGATTT 59.690 50.000 0.00 0.00 0.00 2.17
2435 2466 1.918957 CAAACCTCTCTCCCCCTGATT 59.081 52.381 0.00 0.00 0.00 2.57
2436 2467 1.203492 ACAAACCTCTCTCCCCCTGAT 60.203 52.381 0.00 0.00 0.00 2.90
2437 2468 0.193574 ACAAACCTCTCTCCCCCTGA 59.806 55.000 0.00 0.00 0.00 3.86
2438 2469 0.326264 CACAAACCTCTCTCCCCCTG 59.674 60.000 0.00 0.00 0.00 4.45
2439 2470 0.193574 TCACAAACCTCTCTCCCCCT 59.806 55.000 0.00 0.00 0.00 4.79
2440 2471 1.290134 ATCACAAACCTCTCTCCCCC 58.710 55.000 0.00 0.00 0.00 5.40
2441 2472 2.619074 CCAATCACAAACCTCTCTCCCC 60.619 54.545 0.00 0.00 0.00 4.81
2442 2473 2.040412 ACCAATCACAAACCTCTCTCCC 59.960 50.000 0.00 0.00 0.00 4.30
2443 2474 3.425162 ACCAATCACAAACCTCTCTCC 57.575 47.619 0.00 0.00 0.00 3.71
2444 2475 4.137543 ACAACCAATCACAAACCTCTCTC 58.862 43.478 0.00 0.00 0.00 3.20
2445 2476 4.170468 ACAACCAATCACAAACCTCTCT 57.830 40.909 0.00 0.00 0.00 3.10
2446 2477 4.918810 AACAACCAATCACAAACCTCTC 57.081 40.909 0.00 0.00 0.00 3.20
2447 2478 5.690865 TCTAACAACCAATCACAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
2448 2479 6.381801 CATCTAACAACCAATCACAAACCTC 58.618 40.000 0.00 0.00 0.00 3.85
2449 2480 5.243730 CCATCTAACAACCAATCACAAACCT 59.756 40.000 0.00 0.00 0.00 3.50
2450 2481 5.242838 TCCATCTAACAACCAATCACAAACC 59.757 40.000 0.00 0.00 0.00 3.27
2451 2482 6.325919 TCCATCTAACAACCAATCACAAAC 57.674 37.500 0.00 0.00 0.00 2.93
2452 2483 6.015519 CCTTCCATCTAACAACCAATCACAAA 60.016 38.462 0.00 0.00 0.00 2.83
2453 2484 5.476599 CCTTCCATCTAACAACCAATCACAA 59.523 40.000 0.00 0.00 0.00 3.33
2454 2485 5.009631 CCTTCCATCTAACAACCAATCACA 58.990 41.667 0.00 0.00 0.00 3.58
2455 2486 5.253330 TCCTTCCATCTAACAACCAATCAC 58.747 41.667 0.00 0.00 0.00 3.06
2456 2487 5.500234 CTCCTTCCATCTAACAACCAATCA 58.500 41.667 0.00 0.00 0.00 2.57
2457 2488 4.336713 GCTCCTTCCATCTAACAACCAATC 59.663 45.833 0.00 0.00 0.00 2.67
2458 2489 4.273318 GCTCCTTCCATCTAACAACCAAT 58.727 43.478 0.00 0.00 0.00 3.16
2459 2490 3.686016 GCTCCTTCCATCTAACAACCAA 58.314 45.455 0.00 0.00 0.00 3.67
2460 2491 2.354704 CGCTCCTTCCATCTAACAACCA 60.355 50.000 0.00 0.00 0.00 3.67
2461 2492 2.280628 CGCTCCTTCCATCTAACAACC 58.719 52.381 0.00 0.00 0.00 3.77
2462 2493 2.673368 CACGCTCCTTCCATCTAACAAC 59.327 50.000 0.00 0.00 0.00 3.32
2463 2494 2.301870 ACACGCTCCTTCCATCTAACAA 59.698 45.455 0.00 0.00 0.00 2.83
2464 2495 1.899814 ACACGCTCCTTCCATCTAACA 59.100 47.619 0.00 0.00 0.00 2.41
2465 2496 2.674796 ACACGCTCCTTCCATCTAAC 57.325 50.000 0.00 0.00 0.00 2.34
2466 2497 4.811969 TTTACACGCTCCTTCCATCTAA 57.188 40.909 0.00 0.00 0.00 2.10
2467 2498 4.755411 CTTTTACACGCTCCTTCCATCTA 58.245 43.478 0.00 0.00 0.00 1.98
2468 2499 3.600388 CTTTTACACGCTCCTTCCATCT 58.400 45.455 0.00 0.00 0.00 2.90
2469 2500 2.096013 GCTTTTACACGCTCCTTCCATC 59.904 50.000 0.00 0.00 0.00 3.51
2470 2501 2.084546 GCTTTTACACGCTCCTTCCAT 58.915 47.619 0.00 0.00 0.00 3.41
2471 2502 1.519408 GCTTTTACACGCTCCTTCCA 58.481 50.000 0.00 0.00 0.00 3.53
2472 2503 0.442699 CGCTTTTACACGCTCCTTCC 59.557 55.000 0.00 0.00 0.00 3.46
2473 2504 1.136336 CACGCTTTTACACGCTCCTTC 60.136 52.381 0.00 0.00 0.00 3.46
2474 2505 0.865769 CACGCTTTTACACGCTCCTT 59.134 50.000 0.00 0.00 0.00 3.36
2475 2506 0.249741 ACACGCTTTTACACGCTCCT 60.250 50.000 0.00 0.00 0.00 3.69
2476 2507 1.421382 TACACGCTTTTACACGCTCC 58.579 50.000 0.00 0.00 0.00 4.70
2477 2508 3.508648 TTTACACGCTTTTACACGCTC 57.491 42.857 0.00 0.00 0.00 5.03
2478 2509 3.744426 AGATTTACACGCTTTTACACGCT 59.256 39.130 0.00 0.00 0.00 5.07
2479 2510 4.061570 AGATTTACACGCTTTTACACGC 57.938 40.909 0.00 0.00 0.00 5.34
2480 2511 5.905181 ACAAAGATTTACACGCTTTTACACG 59.095 36.000 0.00 0.00 30.00 4.49
2481 2512 8.837059 CATACAAAGATTTACACGCTTTTACAC 58.163 33.333 0.00 0.00 30.00 2.90
2482 2513 8.561212 ACATACAAAGATTTACACGCTTTTACA 58.439 29.630 0.00 0.00 30.00 2.41
2483 2514 8.944212 ACATACAAAGATTTACACGCTTTTAC 57.056 30.769 0.00 0.00 30.00 2.01
2484 2515 8.995220 AGACATACAAAGATTTACACGCTTTTA 58.005 29.630 0.00 0.00 30.00 1.52
2485 2516 7.871853 AGACATACAAAGATTTACACGCTTTT 58.128 30.769 0.00 0.00 30.00 2.27
2486 2517 7.435068 AGACATACAAAGATTTACACGCTTT 57.565 32.000 0.00 0.00 32.46 3.51
2487 2518 7.201530 GCTAGACATACAAAGATTTACACGCTT 60.202 37.037 0.00 0.00 0.00 4.68
2488 2519 6.255887 GCTAGACATACAAAGATTTACACGCT 59.744 38.462 0.00 0.00 0.00 5.07
2489 2520 6.035650 TGCTAGACATACAAAGATTTACACGC 59.964 38.462 0.00 0.00 0.00 5.34
2490 2521 7.520119 TGCTAGACATACAAAGATTTACACG 57.480 36.000 0.00 0.00 0.00 4.49
2495 2526 9.453572 TCAGAAATGCTAGACATACAAAGATTT 57.546 29.630 0.00 0.00 38.34 2.17
2496 2527 9.624373 ATCAGAAATGCTAGACATACAAAGATT 57.376 29.630 0.00 0.00 38.34 2.40
2497 2528 9.624373 AATCAGAAATGCTAGACATACAAAGAT 57.376 29.630 0.00 0.00 38.34 2.40
2498 2529 9.102757 GAATCAGAAATGCTAGACATACAAAGA 57.897 33.333 0.00 0.00 38.34 2.52
2499 2530 9.107177 AGAATCAGAAATGCTAGACATACAAAG 57.893 33.333 0.00 0.00 38.34 2.77
2500 2531 8.886719 CAGAATCAGAAATGCTAGACATACAAA 58.113 33.333 0.00 0.00 38.34 2.83
2501 2532 8.260114 TCAGAATCAGAAATGCTAGACATACAA 58.740 33.333 0.00 0.00 38.34 2.41
2502 2533 7.785033 TCAGAATCAGAAATGCTAGACATACA 58.215 34.615 0.00 0.00 38.34 2.29
2503 2534 7.384660 CCTCAGAATCAGAAATGCTAGACATAC 59.615 40.741 0.00 0.00 38.34 2.39
2504 2535 7.440198 CCTCAGAATCAGAAATGCTAGACATA 58.560 38.462 0.00 0.00 38.34 2.29
2505 2536 6.289834 CCTCAGAATCAGAAATGCTAGACAT 58.710 40.000 0.00 0.00 42.30 3.06
2506 2537 5.668471 CCTCAGAATCAGAAATGCTAGACA 58.332 41.667 0.00 0.00 0.00 3.41
2507 2538 4.511082 GCCTCAGAATCAGAAATGCTAGAC 59.489 45.833 0.00 0.00 0.00 2.59
2508 2539 4.162888 TGCCTCAGAATCAGAAATGCTAGA 59.837 41.667 0.00 0.00 0.00 2.43
2509 2540 4.449131 TGCCTCAGAATCAGAAATGCTAG 58.551 43.478 0.00 0.00 0.00 3.42
2510 2541 4.492494 TGCCTCAGAATCAGAAATGCTA 57.508 40.909 0.00 0.00 0.00 3.49
2511 2542 3.361281 TGCCTCAGAATCAGAAATGCT 57.639 42.857 0.00 0.00 0.00 3.79
2512 2543 4.650754 AATGCCTCAGAATCAGAAATGC 57.349 40.909 0.00 0.00 0.00 3.56
2513 2544 6.095021 TCTCAAATGCCTCAGAATCAGAAATG 59.905 38.462 0.00 0.00 0.00 2.32
2514 2545 6.185511 TCTCAAATGCCTCAGAATCAGAAAT 58.814 36.000 0.00 0.00 0.00 2.17
2515 2546 5.563592 TCTCAAATGCCTCAGAATCAGAAA 58.436 37.500 0.00 0.00 0.00 2.52
2516 2547 5.169992 TCTCAAATGCCTCAGAATCAGAA 57.830 39.130 0.00 0.00 0.00 3.02
2517 2548 4.831674 TCTCAAATGCCTCAGAATCAGA 57.168 40.909 0.00 0.00 0.00 3.27
2518 2549 6.062434 GATTCTCAAATGCCTCAGAATCAG 57.938 41.667 13.28 0.00 45.69 2.90
2520 2551 7.798596 TTAGATTCTCAAATGCCTCAGAATC 57.201 36.000 11.07 11.07 46.31 2.52
2521 2552 7.201803 GCTTTAGATTCTCAAATGCCTCAGAAT 60.202 37.037 0.00 0.00 38.12 2.40
2522 2553 6.094603 GCTTTAGATTCTCAAATGCCTCAGAA 59.905 38.462 0.00 0.00 0.00 3.02
2523 2554 5.587844 GCTTTAGATTCTCAAATGCCTCAGA 59.412 40.000 0.00 0.00 0.00 3.27
2524 2555 5.356190 TGCTTTAGATTCTCAAATGCCTCAG 59.644 40.000 0.00 0.00 0.00 3.35
2525 2556 5.255687 TGCTTTAGATTCTCAAATGCCTCA 58.744 37.500 0.00 0.00 0.00 3.86
2526 2557 5.824904 TGCTTTAGATTCTCAAATGCCTC 57.175 39.130 0.00 0.00 0.00 4.70
2527 2558 5.451520 GCATGCTTTAGATTCTCAAATGCCT 60.452 40.000 11.37 0.00 0.00 4.75
2528 2559 4.743644 GCATGCTTTAGATTCTCAAATGCC 59.256 41.667 11.37 0.00 0.00 4.40
2529 2560 5.589192 AGCATGCTTTAGATTCTCAAATGC 58.411 37.500 16.30 8.32 0.00 3.56
2549 2580 1.670674 CGTCAGGGTACGCTTTTAGCA 60.671 52.381 10.17 0.00 42.58 3.49
2553 2584 0.677842 AGACGTCAGGGTACGCTTTT 59.322 50.000 19.50 0.00 46.71 2.27
2567 2598 3.270877 GGAGATTTTGCCATGTAGACGT 58.729 45.455 0.00 0.00 0.00 4.34
2672 2744 8.247562 TGCCGTGCTTTCAAACTAAATTATATT 58.752 29.630 0.00 0.00 0.00 1.28
2673 2745 7.767261 TGCCGTGCTTTCAAACTAAATTATAT 58.233 30.769 0.00 0.00 0.00 0.86
2674 2746 7.147143 TGCCGTGCTTTCAAACTAAATTATA 57.853 32.000 0.00 0.00 0.00 0.98
2675 2747 6.019779 TGCCGTGCTTTCAAACTAAATTAT 57.980 33.333 0.00 0.00 0.00 1.28
2676 2748 5.440234 TGCCGTGCTTTCAAACTAAATTA 57.560 34.783 0.00 0.00 0.00 1.40
2677 2749 4.314740 TGCCGTGCTTTCAAACTAAATT 57.685 36.364 0.00 0.00 0.00 1.82
2681 2753 5.440234 TTATTTGCCGTGCTTTCAAACTA 57.560 34.783 0.00 0.00 33.24 2.24
2688 2760 1.274728 TGCCATTATTTGCCGTGCTTT 59.725 42.857 0.00 0.00 0.00 3.51
2723 2795 4.501071 GCCGAGGATGACAAGTTTAGTTA 58.499 43.478 0.00 0.00 0.00 2.24
2780 2852 9.950496 ATAGCATTCGGAAAAGTATCATCTTAT 57.050 29.630 0.00 0.00 0.00 1.73
2838 2947 9.931698 TGGTTCTCTTAGTAGAATAAGATACCA 57.068 33.333 19.41 19.41 44.22 3.25
2916 3109 8.764287 GCAAATGGCATTATGAAACTAAATACC 58.236 33.333 14.05 0.00 43.97 2.73
2958 3151 9.991906 GGTACCTTCTATACTACATATGCAAAA 57.008 33.333 4.06 0.00 0.00 2.44
2967 3160 6.666546 ACAAAGCTGGTACCTTCTATACTACA 59.333 38.462 14.36 0.00 0.00 2.74
2968 3161 7.068470 AGACAAAGCTGGTACCTTCTATACTAC 59.932 40.741 14.36 0.00 0.00 2.73
2971 3164 6.043411 CAGACAAAGCTGGTACCTTCTATAC 58.957 44.000 14.36 0.00 32.26 1.47
2973 3166 4.532521 ACAGACAAAGCTGGTACCTTCTAT 59.467 41.667 14.36 0.00 40.20 1.98
2976 3169 2.808543 CACAGACAAAGCTGGTACCTTC 59.191 50.000 14.36 4.63 40.20 3.46
2980 3173 3.724374 TGTACACAGACAAAGCTGGTAC 58.276 45.455 0.30 0.30 39.85 3.34
2992 3185 2.232208 CACATCTGGAGCTGTACACAGA 59.768 50.000 13.50 14.23 46.59 3.41
2993 3186 2.232208 TCACATCTGGAGCTGTACACAG 59.768 50.000 4.96 4.96 46.40 3.66
3002 3195 6.317140 TGAGTCATAAATTTCACATCTGGAGC 59.683 38.462 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.