Multiple sequence alignment - TraesCS4B01G099200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G099200 chr4B 100.000 2633 0 0 1 2633 104340923 104343555 0.000000e+00 4863.0
1 TraesCS4B01G099200 chr4B 93.410 956 33 7 752 1706 103891300 103890374 0.000000e+00 1389.0
2 TraesCS4B01G099200 chr4B 93.410 956 33 7 752 1706 104131762 104130836 0.000000e+00 1389.0
3 TraesCS4B01G099200 chr4B 93.312 957 33 8 752 1706 104005855 104004928 0.000000e+00 1384.0
4 TraesCS4B01G099200 chr4A 91.903 1865 88 31 688 2508 524178480 524180325 0.000000e+00 2549.0
5 TraesCS4B01G099200 chr4A 93.988 1181 53 7 670 1847 522973685 522972520 0.000000e+00 1772.0
6 TraesCS4B01G099200 chr4A 91.975 162 12 1 284 444 524177880 524178041 2.640000e-55 226.0
7 TraesCS4B01G099200 chr4A 94.737 57 2 1 572 627 314860903 314860959 1.300000e-13 87.9
8 TraesCS4B01G099200 chr4A 94.737 57 2 1 572 627 315036737 315036793 1.300000e-13 87.9
9 TraesCS4B01G099200 chr4A 82.143 84 12 3 1623 1706 522972496 522972416 4.700000e-08 69.4
10 TraesCS4B01G099200 chr4D 97.424 1087 17 2 668 1754 70364996 70366071 0.000000e+00 1842.0
11 TraesCS4B01G099200 chr4D 95.886 948 26 5 755 1702 70343610 70342676 0.000000e+00 1522.0
12 TraesCS4B01G099200 chr4D 92.932 1047 52 10 669 1708 70337992 70336961 0.000000e+00 1504.0
13 TraesCS4B01G099200 chr4D 84.023 532 63 11 8 518 70363632 70364162 2.350000e-135 492.0
14 TraesCS4B01G099200 chr4D 86.301 365 44 6 2079 2441 456505115 456504755 2.460000e-105 392.0
15 TraesCS4B01G099200 chr4D 89.362 235 15 6 1752 1983 70372065 70372292 1.190000e-73 287.0
16 TraesCS4B01G099200 chr4D 96.000 50 2 0 534 583 70364893 70364942 6.040000e-12 82.4
17 TraesCS4B01G099200 chr4D 90.000 60 4 2 577 635 69428751 69428693 2.810000e-10 76.8
18 TraesCS4B01G099200 chr4D 91.071 56 4 1 571 625 430836203 430836258 1.010000e-09 75.0
19 TraesCS4B01G099200 chr5A 86.728 648 65 13 879 1514 365656944 365656306 0.000000e+00 701.0
20 TraesCS4B01G099200 chr5A 86.911 382 38 11 2064 2439 342046503 342046128 4.050000e-113 418.0
21 TraesCS4B01G099200 chr1B 87.466 367 39 6 2079 2442 328153540 328153178 1.460000e-112 416.0
22 TraesCS4B01G099200 chr1D 87.222 360 39 5 2079 2436 228830305 228829951 1.130000e-108 403.0
23 TraesCS4B01G099200 chr1A 87.222 360 38 6 2079 2436 296938605 296938252 1.130000e-108 403.0
24 TraesCS4B01G099200 chr1A 88.710 62 6 1 572 632 551541299 551541360 1.010000e-09 75.0
25 TraesCS4B01G099200 chr5D 86.849 365 35 9 2079 2435 338382279 338381920 1.900000e-106 396.0
26 TraesCS4B01G099200 chr2D 85.946 370 40 8 2079 2439 637973970 637973604 4.110000e-103 385.0
27 TraesCS4B01G099200 chr5B 85.079 382 41 13 2060 2435 397511871 397511500 2.470000e-100 375.0
28 TraesCS4B01G099200 chr6D 96.154 52 2 0 585 636 437774089 437774038 4.670000e-13 86.1
29 TraesCS4B01G099200 chr3A 97.917 48 1 0 585 632 697737716 697737763 1.680000e-12 84.2
30 TraesCS4B01G099200 chr3A 91.379 58 4 1 572 628 506803706 506803649 7.810000e-11 78.7
31 TraesCS4B01G099200 chr7D 88.060 67 6 2 562 627 104025138 104025073 7.810000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G099200 chr4B 104340923 104343555 2632 False 4863.000000 4863 100.000000 1 2633 1 chr4B.!!$F1 2632
1 TraesCS4B01G099200 chr4B 103890374 103891300 926 True 1389.000000 1389 93.410000 752 1706 1 chr4B.!!$R1 954
2 TraesCS4B01G099200 chr4B 104130836 104131762 926 True 1389.000000 1389 93.410000 752 1706 1 chr4B.!!$R3 954
3 TraesCS4B01G099200 chr4B 104004928 104005855 927 True 1384.000000 1384 93.312000 752 1706 1 chr4B.!!$R2 954
4 TraesCS4B01G099200 chr4A 524177880 524180325 2445 False 1387.500000 2549 91.939000 284 2508 2 chr4A.!!$F3 2224
5 TraesCS4B01G099200 chr4A 522972416 522973685 1269 True 920.700000 1772 88.065500 670 1847 2 chr4A.!!$R1 1177
6 TraesCS4B01G099200 chr4D 70342676 70343610 934 True 1522.000000 1522 95.886000 755 1702 1 chr4D.!!$R3 947
7 TraesCS4B01G099200 chr4D 70336961 70337992 1031 True 1504.000000 1504 92.932000 669 1708 1 chr4D.!!$R2 1039
8 TraesCS4B01G099200 chr4D 70363632 70366071 2439 False 805.466667 1842 92.482333 8 1754 3 chr4D.!!$F3 1746
9 TraesCS4B01G099200 chr5A 365656306 365656944 638 True 701.000000 701 86.728000 879 1514 1 chr5A.!!$R2 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 483 0.035439 ACCGCCCCAATCACTGTTAG 60.035 55.0 0.0 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 3049 0.107361 TGCAGAGATCAGCACCATGG 60.107 55.0 11.19 11.19 33.35 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.199804 CCTAGCTCATAGGCGGGT 57.800 61.111 0.00 0.00 44.77 5.28
23 24 1.261480 CTAGCTCATAGGCGGGTGAT 58.739 55.000 0.00 0.00 37.29 3.06
24 25 2.447443 CTAGCTCATAGGCGGGTGATA 58.553 52.381 0.00 0.00 37.29 2.15
34 38 1.436336 CGGGTGATACGTGGAGTCC 59.564 63.158 0.73 0.73 0.00 3.85
44 48 1.593209 GTGGAGTCCGTTGTTGCGA 60.593 57.895 4.30 0.00 0.00 5.10
54 58 1.878975 TTGTTGCGAACGAGCGTCA 60.879 52.632 0.00 0.00 40.67 4.35
56 60 3.033764 TTGCGAACGAGCGTCACC 61.034 61.111 0.00 0.00 40.67 4.02
64 68 4.101448 GAGCGTCACCCCCATGCT 62.101 66.667 0.00 0.00 38.89 3.79
71 75 1.214305 TCACCCCCATGCTAAGGCTT 61.214 55.000 4.58 4.58 39.59 4.35
146 151 3.802418 AAGGTTGTCGCGACGCCTT 62.802 57.895 38.95 38.95 41.29 4.35
183 188 1.743958 CACCACTAGAAGGACGACGAT 59.256 52.381 0.00 0.00 0.00 3.73
189 194 2.510768 AGAAGGACGACGATAATGGC 57.489 50.000 0.00 0.00 0.00 4.40
190 195 1.754803 AGAAGGACGACGATAATGGCA 59.245 47.619 0.00 0.00 0.00 4.92
193 198 0.529773 GGACGACGATAATGGCAGCA 60.530 55.000 0.00 0.00 0.00 4.41
194 199 1.286501 GACGACGATAATGGCAGCAA 58.713 50.000 0.00 0.00 0.00 3.91
195 200 1.867233 GACGACGATAATGGCAGCAAT 59.133 47.619 0.00 0.00 0.00 3.56
197 202 1.069703 CGACGATAATGGCAGCAATGG 60.070 52.381 0.00 0.00 0.00 3.16
219 239 0.806884 TTGCGAACGACGAAGGTGTT 60.807 50.000 0.00 0.00 45.77 3.32
226 246 2.047560 ACGAAGGTGTTAGCGGCC 60.048 61.111 0.00 0.00 0.00 6.13
230 250 0.321298 GAAGGTGTTAGCGGCCTCAA 60.321 55.000 0.00 0.00 0.00 3.02
254 274 0.392461 TATGCCTTCAAGGTCACCGC 60.392 55.000 5.03 0.00 37.80 5.68
279 299 3.320826 GGTACCTCACCTTGTTTGCATTT 59.679 43.478 4.06 0.00 44.79 2.32
284 304 4.635324 CCTCACCTTGTTTGCATTTGTTTT 59.365 37.500 0.00 0.00 0.00 2.43
285 305 5.123661 CCTCACCTTGTTTGCATTTGTTTTT 59.876 36.000 0.00 0.00 0.00 1.94
390 412 5.750547 TGCATGAATTTCGTTTGCTTTTGTA 59.249 32.000 15.38 0.00 34.47 2.41
446 468 2.100631 CCAGTTGGATGACGACCGC 61.101 63.158 0.00 0.00 37.39 5.68
454 476 2.587322 GATGACGACCGCCCCAATCA 62.587 60.000 0.00 0.00 0.00 2.57
459 481 1.303317 GACCGCCCCAATCACTGTT 60.303 57.895 0.00 0.00 0.00 3.16
460 482 0.035820 GACCGCCCCAATCACTGTTA 60.036 55.000 0.00 0.00 0.00 2.41
461 483 0.035439 ACCGCCCCAATCACTGTTAG 60.035 55.000 0.00 0.00 0.00 2.34
468 490 3.497763 CCCCAATCACTGTTAGTGGACAA 60.498 47.826 9.84 0.00 45.94 3.18
483 505 2.863658 GACAAGTCTGTCGTTGATGC 57.136 50.000 0.00 0.00 42.54 3.91
485 507 1.139989 CAAGTCTGTCGTTGATGCGT 58.860 50.000 0.00 0.00 0.00 5.24
499 521 2.620585 TGATGCGTGTTTTGATCAACCA 59.379 40.909 7.89 5.26 0.00 3.67
502 524 1.394697 CGTGTTTTGATCAACCACGC 58.605 50.000 30.82 23.81 38.31 5.34
518 540 0.109723 ACGCTTGGACTTGCCCTAAA 59.890 50.000 0.00 0.00 34.97 1.85
530 552 5.876357 ACTTGCCCTAAAGTGATTTGACTA 58.124 37.500 0.00 0.00 38.95 2.59
532 554 6.775629 ACTTGCCCTAAAGTGATTTGACTAAA 59.224 34.615 0.00 0.00 38.95 1.85
618 1355 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
619 1356 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
620 1357 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
621 1358 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
622 1359 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
623 1360 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
627 1364 6.803366 ATTAGTTTACGGAGGGAGTACAAT 57.197 37.500 0.00 0.00 0.00 2.71
633 1370 7.125356 AGTTTACGGAGGGAGTACAATCTAAAT 59.875 37.037 0.00 0.00 0.00 1.40
640 1377 6.587273 AGGGAGTACAATCTAAATTCTGAGC 58.413 40.000 0.00 0.00 0.00 4.26
646 1383 6.414408 ACAATCTAAATTCTGAGCGTCAAG 57.586 37.500 0.00 0.00 0.00 3.02
649 1386 7.276658 ACAATCTAAATTCTGAGCGTCAAGTAG 59.723 37.037 0.00 0.00 0.00 2.57
968 2035 2.433446 GATCCATCCAGGGCGCAT 59.567 61.111 10.83 0.00 38.24 4.73
969 2036 1.673665 GATCCATCCAGGGCGCATC 60.674 63.158 10.83 0.00 38.24 3.91
1029 2105 1.592400 CTGTACTCGACGAGGCCCAA 61.592 60.000 27.39 8.49 33.35 4.12
1545 2622 1.100463 TGCTTCGCACTGCCAAGAAA 61.100 50.000 12.10 0.00 31.71 2.52
1723 3049 8.020861 TGTTCCACGTATATTTTGTTACAGAC 57.979 34.615 0.00 0.00 0.00 3.51
1754 3080 5.987953 GCTGATCTCTGCAATAGTGTTGATA 59.012 40.000 3.47 0.00 40.06 2.15
1770 3096 8.635877 AGTGTTGATATCTCGTTAACTTGATC 57.364 34.615 11.68 5.23 0.00 2.92
1834 3160 3.211045 TGCGGGGTGCTAATTCTTTATC 58.789 45.455 0.00 0.00 46.63 1.75
1870 3199 7.447374 TGGGTTAATTTTGATGTACACTCTG 57.553 36.000 0.00 0.00 0.00 3.35
1884 3213 5.643348 TGTACACTCTGTATTTTGCCATGAG 59.357 40.000 0.00 0.00 35.05 2.90
1895 3224 2.423388 GCCATGAGCAATCCCTTCC 58.577 57.895 0.00 0.00 42.97 3.46
1901 3230 4.385643 CCATGAGCAATCCCTTCCTAGAAA 60.386 45.833 0.00 0.00 0.00 2.52
1903 3232 5.456921 TGAGCAATCCCTTCCTAGAAAAT 57.543 39.130 0.00 0.00 0.00 1.82
1906 3235 7.586349 TGAGCAATCCCTTCCTAGAAAATAAT 58.414 34.615 0.00 0.00 0.00 1.28
1907 3236 8.723365 TGAGCAATCCCTTCCTAGAAAATAATA 58.277 33.333 0.00 0.00 0.00 0.98
1938 3267 2.038387 ATCAAGCACACCCGATTACC 57.962 50.000 0.00 0.00 0.00 2.85
1949 3278 2.777692 ACCCGATTACCATCTCCACAAT 59.222 45.455 0.00 0.00 0.00 2.71
1993 3323 5.888161 GGGAAAAGATATTTGAGCCAAGAGA 59.112 40.000 0.00 0.00 0.00 3.10
2040 3383 8.838741 AGGGGAGGTTAAATAACAAAGTACATA 58.161 33.333 5.74 0.00 37.92 2.29
2064 3407 4.779993 AGGGGAGACTTGTATGAAATCC 57.220 45.455 0.00 0.00 0.00 3.01
2065 3408 4.111577 AGGGGAGACTTGTATGAAATCCA 58.888 43.478 0.00 0.00 0.00 3.41
2067 3410 5.015178 AGGGGAGACTTGTATGAAATCCAAA 59.985 40.000 0.00 0.00 0.00 3.28
2068 3411 5.893824 GGGGAGACTTGTATGAAATCCAAAT 59.106 40.000 0.00 0.00 0.00 2.32
2069 3412 7.060421 GGGGAGACTTGTATGAAATCCAAATA 58.940 38.462 0.00 0.00 0.00 1.40
2070 3413 7.559897 GGGGAGACTTGTATGAAATCCAAATAA 59.440 37.037 0.00 0.00 0.00 1.40
2133 3500 8.550710 AAATTATTTGACAACATTCATGTGGG 57.449 30.769 0.00 0.00 41.61 4.61
2143 3510 5.036117 ACATTCATGTGGGGTATGTCTAC 57.964 43.478 0.00 0.00 40.03 2.59
2178 3545 2.907910 ATCAGCACAAAACTCGATGC 57.092 45.000 0.00 0.00 38.39 3.91
2190 3557 5.786401 AAACTCGATGCACATTTAGAGAC 57.214 39.130 14.39 0.00 0.00 3.36
2222 3589 8.976986 AGACAAATTCGAACGTAAATAGTAGT 57.023 30.769 0.00 0.00 0.00 2.73
2263 3631 8.044060 TCTTTTGACACTATCCACATTTGATC 57.956 34.615 0.00 0.00 0.00 2.92
2266 3634 6.990341 TGACACTATCCACATTTGATCTTG 57.010 37.500 0.00 0.00 0.00 3.02
2270 3638 7.170965 ACACTATCCACATTTGATCTTGTCTT 58.829 34.615 0.00 0.00 0.00 3.01
2309 3677 8.814038 AATGTAAGTTGAATTAGGAGCTGAAT 57.186 30.769 0.00 0.00 0.00 2.57
2313 3681 9.561270 GTAAGTTGAATTAGGAGCTGAATTTTC 57.439 33.333 0.00 0.00 0.00 2.29
2320 3688 8.885693 AATTAGGAGCTGAATTTTCTTAAGGT 57.114 30.769 1.85 0.00 0.00 3.50
2354 3722 5.521010 AGCATTGATGTGTGTCAACAAAAAG 59.479 36.000 0.00 0.00 40.97 2.27
2462 3832 3.610040 ACATAGATGCCAAACGACTCA 57.390 42.857 0.00 0.00 0.00 3.41
2466 3836 3.340814 AGATGCCAAACGACTCATCTT 57.659 42.857 0.00 0.00 41.87 2.40
2499 3869 7.264221 TCAGTGCAACAAAATTGACTTATTGT 58.736 30.769 0.00 0.00 41.43 2.71
2529 3899 9.869667 ACTATATAGTATATAACAGGCCTGGAG 57.130 37.037 35.42 12.68 34.13 3.86
2530 3900 9.869667 CTATATAGTATATAACAGGCCTGGAGT 57.130 37.037 35.42 22.19 34.19 3.85
2533 3903 8.770010 ATAGTATATAACAGGCCTGGAGTATC 57.230 38.462 35.42 19.06 34.19 2.24
2566 3936 8.419076 AGGAAAACAACAACAAAATATGACAC 57.581 30.769 0.00 0.00 0.00 3.67
2567 3937 8.257306 AGGAAAACAACAACAAAATATGACACT 58.743 29.630 0.00 0.00 0.00 3.55
2568 3938 8.327429 GGAAAACAACAACAAAATATGACACTG 58.673 33.333 0.00 0.00 0.00 3.66
2569 3939 7.769272 AAACAACAACAAAATATGACACTGG 57.231 32.000 0.00 0.00 0.00 4.00
2570 3940 6.707440 ACAACAACAAAATATGACACTGGA 57.293 33.333 0.00 0.00 0.00 3.86
2571 3941 7.106439 ACAACAACAAAATATGACACTGGAA 57.894 32.000 0.00 0.00 0.00 3.53
2572 3942 7.551585 ACAACAACAAAATATGACACTGGAAA 58.448 30.769 0.00 0.00 0.00 3.13
2573 3943 8.037758 ACAACAACAAAATATGACACTGGAAAA 58.962 29.630 0.00 0.00 0.00 2.29
2574 3944 9.044150 CAACAACAAAATATGACACTGGAAAAT 57.956 29.630 0.00 0.00 0.00 1.82
2583 3953 9.706691 AATATGACACTGGAAAATATAGTACGG 57.293 33.333 0.00 0.00 0.00 4.02
2584 3954 5.353938 TGACACTGGAAAATATAGTACGGC 58.646 41.667 0.00 0.00 0.00 5.68
2585 3955 5.105269 TGACACTGGAAAATATAGTACGGCA 60.105 40.000 0.00 0.00 0.00 5.69
2586 3956 5.925509 ACACTGGAAAATATAGTACGGCAT 58.074 37.500 0.00 0.00 0.00 4.40
2587 3957 5.989777 ACACTGGAAAATATAGTACGGCATC 59.010 40.000 0.00 0.00 0.00 3.91
2588 3958 6.183360 ACACTGGAAAATATAGTACGGCATCT 60.183 38.462 0.00 0.00 0.00 2.90
2589 3959 6.366332 CACTGGAAAATATAGTACGGCATCTC 59.634 42.308 0.00 0.00 0.00 2.75
2590 3960 6.267928 ACTGGAAAATATAGTACGGCATCTCT 59.732 38.462 0.00 0.00 0.00 3.10
2591 3961 6.688578 TGGAAAATATAGTACGGCATCTCTC 58.311 40.000 0.00 0.00 0.00 3.20
2592 3962 6.100668 GGAAAATATAGTACGGCATCTCTCC 58.899 44.000 0.00 0.00 0.00 3.71
2593 3963 6.071278 GGAAAATATAGTACGGCATCTCTCCT 60.071 42.308 0.00 0.00 0.00 3.69
2594 3964 6.919775 AAATATAGTACGGCATCTCTCCTT 57.080 37.500 0.00 0.00 0.00 3.36
2595 3965 6.919775 AATATAGTACGGCATCTCTCCTTT 57.080 37.500 0.00 0.00 0.00 3.11
2596 3966 4.857509 ATAGTACGGCATCTCTCCTTTC 57.142 45.455 0.00 0.00 0.00 2.62
2597 3967 1.405821 AGTACGGCATCTCTCCTTTCG 59.594 52.381 0.00 0.00 0.00 3.46
2598 3968 0.744874 TACGGCATCTCTCCTTTCGG 59.255 55.000 0.00 0.00 0.00 4.30
2599 3969 0.970937 ACGGCATCTCTCCTTTCGGA 60.971 55.000 0.00 0.00 37.82 4.55
2600 3970 0.390860 CGGCATCTCTCCTTTCGGAT 59.609 55.000 0.00 0.00 39.01 4.18
2601 3971 1.202580 CGGCATCTCTCCTTTCGGATT 60.203 52.381 0.00 0.00 39.01 3.01
2602 3972 2.743183 CGGCATCTCTCCTTTCGGATTT 60.743 50.000 0.00 0.00 39.01 2.17
2603 3973 3.492656 CGGCATCTCTCCTTTCGGATTTA 60.493 47.826 0.00 0.00 39.01 1.40
2604 3974 4.646572 GGCATCTCTCCTTTCGGATTTAT 58.353 43.478 0.00 0.00 39.01 1.40
2605 3975 5.566826 CGGCATCTCTCCTTTCGGATTTATA 60.567 44.000 0.00 0.00 39.01 0.98
2606 3976 6.231211 GGCATCTCTCCTTTCGGATTTATAA 58.769 40.000 0.00 0.00 39.01 0.98
2607 3977 6.370166 GGCATCTCTCCTTTCGGATTTATAAG 59.630 42.308 0.00 0.00 39.01 1.73
2608 3978 6.370166 GCATCTCTCCTTTCGGATTTATAAGG 59.630 42.308 0.00 0.00 39.01 2.69
2609 3979 5.855045 TCTCTCCTTTCGGATTTATAAGGC 58.145 41.667 0.00 0.00 39.01 4.35
2610 3980 5.602978 TCTCTCCTTTCGGATTTATAAGGCT 59.397 40.000 0.00 0.00 39.01 4.58
2611 3981 5.855045 TCTCCTTTCGGATTTATAAGGCTC 58.145 41.667 0.00 0.00 39.01 4.70
2612 3982 5.365605 TCTCCTTTCGGATTTATAAGGCTCA 59.634 40.000 0.00 0.00 39.01 4.26
2613 3983 5.365619 TCCTTTCGGATTTATAAGGCTCAC 58.634 41.667 0.00 0.00 37.62 3.51
2614 3984 5.104693 TCCTTTCGGATTTATAAGGCTCACA 60.105 40.000 0.00 0.00 37.62 3.58
2615 3985 5.007724 CCTTTCGGATTTATAAGGCTCACAC 59.992 44.000 0.00 0.00 31.59 3.82
2616 3986 3.713288 TCGGATTTATAAGGCTCACACG 58.287 45.455 0.00 0.00 0.00 4.49
2617 3987 3.131577 TCGGATTTATAAGGCTCACACGT 59.868 43.478 0.00 0.00 0.00 4.49
2618 3988 4.338964 TCGGATTTATAAGGCTCACACGTA 59.661 41.667 0.00 0.00 0.00 3.57
2619 3989 5.010314 TCGGATTTATAAGGCTCACACGTAT 59.990 40.000 0.00 0.00 0.00 3.06
2620 3990 5.345202 CGGATTTATAAGGCTCACACGTATC 59.655 44.000 0.00 0.00 0.00 2.24
2621 3991 5.638234 GGATTTATAAGGCTCACACGTATCC 59.362 44.000 0.00 0.00 0.00 2.59
2622 3992 5.864418 TTTATAAGGCTCACACGTATCCT 57.136 39.130 0.00 0.00 0.00 3.24
2623 3993 5.864418 TTATAAGGCTCACACGTATCCTT 57.136 39.130 9.73 9.73 40.05 3.36
2624 3994 4.755266 ATAAGGCTCACACGTATCCTTT 57.245 40.909 9.99 0.00 38.10 3.11
2625 3995 3.418684 AAGGCTCACACGTATCCTTTT 57.581 42.857 0.00 0.00 33.69 2.27
2626 3996 3.418684 AGGCTCACACGTATCCTTTTT 57.581 42.857 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.261480 ATCACCCGCCTATGAGCTAG 58.739 55.000 0.00 0.00 0.00 3.42
5 6 2.168496 GTATCACCCGCCTATGAGCTA 58.832 52.381 0.00 0.00 0.00 3.32
6 7 0.969894 GTATCACCCGCCTATGAGCT 59.030 55.000 0.00 0.00 0.00 4.09
20 21 1.250328 ACAACGGACTCCACGTATCA 58.750 50.000 0.00 0.00 44.83 2.15
23 24 0.598158 GCAACAACGGACTCCACGTA 60.598 55.000 0.00 0.00 44.83 3.57
44 48 3.319198 ATGGGGGTGACGCTCGTT 61.319 61.111 0.00 0.00 44.03 3.85
54 58 0.324645 CAAAGCCTTAGCATGGGGGT 60.325 55.000 0.00 0.00 43.56 4.95
56 60 0.819582 CACAAAGCCTTAGCATGGGG 59.180 55.000 0.00 0.00 43.56 4.96
71 75 2.589540 CTCCTATGCCCGGCACAA 59.410 61.111 16.16 5.08 43.04 3.33
77 81 3.043419 CTCGACCTCCTATGCCCG 58.957 66.667 0.00 0.00 0.00 6.13
80 84 1.300542 GCTGCTCGACCTCCTATGC 60.301 63.158 0.00 0.00 0.00 3.14
82 86 1.743321 GCAGCTGCTCGACCTCCTAT 61.743 60.000 31.33 0.00 38.21 2.57
146 151 2.659244 GAAACACCGTCGTCCGCA 60.659 61.111 0.00 0.00 34.38 5.69
183 188 0.173029 CAACGCCATTGCTGCCATTA 59.827 50.000 0.00 0.00 34.43 1.90
200 205 0.806884 AACACCTTCGTCGTTCGCAA 60.807 50.000 0.00 0.00 39.67 4.85
201 206 0.030504 TAACACCTTCGTCGTTCGCA 59.969 50.000 0.00 0.00 39.67 5.10
202 207 0.706729 CTAACACCTTCGTCGTTCGC 59.293 55.000 0.00 0.00 39.67 4.70
203 208 0.706729 GCTAACACCTTCGTCGTTCG 59.293 55.000 0.00 0.00 41.41 3.95
204 209 0.706729 CGCTAACACCTTCGTCGTTC 59.293 55.000 0.00 0.00 0.00 3.95
205 210 0.665369 CCGCTAACACCTTCGTCGTT 60.665 55.000 0.00 0.00 0.00 3.85
210 230 1.810030 GAGGCCGCTAACACCTTCG 60.810 63.158 0.00 0.00 32.67 3.79
214 234 1.305930 CCTTTGAGGCCGCTAACACC 61.306 60.000 8.34 0.00 0.00 4.16
235 255 0.392461 GCGGTGACCTTGAAGGCATA 60.392 55.000 11.96 0.00 39.63 3.14
263 283 7.672983 TTAAAAACAAATGCAAACAAGGTGA 57.327 28.000 0.00 0.00 0.00 4.02
450 472 5.163301 ACAGACTTGTCCACTAACAGTGATT 60.163 40.000 7.87 0.00 45.59 2.57
454 476 4.323553 GACAGACTTGTCCACTAACAGT 57.676 45.455 0.00 0.00 46.47 3.55
468 490 0.032130 ACACGCATCAACGACAGACT 59.968 50.000 0.00 0.00 36.70 3.24
475 497 2.914861 TGATCAAAACACGCATCAACG 58.085 42.857 0.00 0.00 39.50 4.10
485 507 2.223688 CCAAGCGTGGTTGATCAAAACA 60.224 45.455 10.35 9.76 40.42 2.83
499 521 0.109723 TTTAGGGCAAGTCCAAGCGT 59.890 50.000 0.00 0.00 36.21 5.07
502 524 3.140325 TCACTTTAGGGCAAGTCCAAG 57.860 47.619 0.00 0.00 34.60 3.61
508 530 6.817765 TTAGTCAAATCACTTTAGGGCAAG 57.182 37.500 0.00 0.00 0.00 4.01
530 552 7.095271 GCACAATAATGCGCCCAATATAAATTT 60.095 33.333 4.18 0.00 35.50 1.82
532 554 5.868801 GCACAATAATGCGCCCAATATAAAT 59.131 36.000 4.18 0.00 35.50 1.40
592 1329 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
593 1330 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
594 1331 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
595 1332 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
596 1333 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
597 1334 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
598 1335 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
599 1336 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
600 1337 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
601 1338 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
602 1339 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
603 1340 7.781693 AGATTGTACTCCCTCCGTAAACTAATA 59.218 37.037 0.00 0.00 0.00 0.98
604 1341 6.610425 AGATTGTACTCCCTCCGTAAACTAAT 59.390 38.462 0.00 0.00 0.00 1.73
605 1342 5.954150 AGATTGTACTCCCTCCGTAAACTAA 59.046 40.000 0.00 0.00 0.00 2.24
606 1343 5.513233 AGATTGTACTCCCTCCGTAAACTA 58.487 41.667 0.00 0.00 0.00 2.24
607 1344 4.351127 AGATTGTACTCCCTCCGTAAACT 58.649 43.478 0.00 0.00 0.00 2.66
608 1345 4.732672 AGATTGTACTCCCTCCGTAAAC 57.267 45.455 0.00 0.00 0.00 2.01
609 1346 6.855763 TTTAGATTGTACTCCCTCCGTAAA 57.144 37.500 0.00 0.00 0.00 2.01
610 1347 7.343833 AGAATTTAGATTGTACTCCCTCCGTAA 59.656 37.037 0.00 0.00 0.00 3.18
611 1348 6.837568 AGAATTTAGATTGTACTCCCTCCGTA 59.162 38.462 0.00 0.00 0.00 4.02
612 1349 5.661759 AGAATTTAGATTGTACTCCCTCCGT 59.338 40.000 0.00 0.00 0.00 4.69
613 1350 5.986135 CAGAATTTAGATTGTACTCCCTCCG 59.014 44.000 0.00 0.00 0.00 4.63
614 1351 7.125792 TCAGAATTTAGATTGTACTCCCTCC 57.874 40.000 0.00 0.00 0.00 4.30
615 1352 6.704050 GCTCAGAATTTAGATTGTACTCCCTC 59.296 42.308 0.00 0.00 0.00 4.30
616 1353 6.587273 GCTCAGAATTTAGATTGTACTCCCT 58.413 40.000 0.00 0.00 0.00 4.20
617 1354 5.463724 CGCTCAGAATTTAGATTGTACTCCC 59.536 44.000 0.00 0.00 0.00 4.30
618 1355 6.043411 ACGCTCAGAATTTAGATTGTACTCC 58.957 40.000 0.00 0.00 0.00 3.85
619 1356 6.752351 TGACGCTCAGAATTTAGATTGTACTC 59.248 38.462 0.00 0.00 0.00 2.59
620 1357 6.631016 TGACGCTCAGAATTTAGATTGTACT 58.369 36.000 0.00 0.00 0.00 2.73
621 1358 6.887376 TGACGCTCAGAATTTAGATTGTAC 57.113 37.500 0.00 0.00 0.00 2.90
622 1359 7.097192 ACTTGACGCTCAGAATTTAGATTGTA 58.903 34.615 0.00 0.00 0.00 2.41
623 1360 5.934625 ACTTGACGCTCAGAATTTAGATTGT 59.065 36.000 0.00 0.00 0.00 2.71
627 1364 5.103000 GCTACTTGACGCTCAGAATTTAGA 58.897 41.667 0.00 0.00 0.00 2.10
633 1370 0.596577 ACGCTACTTGACGCTCAGAA 59.403 50.000 0.00 0.00 0.00 3.02
640 1377 1.017701 GGGGGAAACGCTACTTGACG 61.018 60.000 0.00 0.00 44.03 4.35
664 1401 3.349022 TCGGAGCGGTATTTGGATTTTT 58.651 40.909 0.00 0.00 0.00 1.94
968 2035 2.701780 GGAAGCAGAGAGTCGCGGA 61.702 63.158 6.13 0.00 0.00 5.54
969 2036 2.202676 GGAAGCAGAGAGTCGCGG 60.203 66.667 6.13 0.00 0.00 6.46
971 2038 1.073768 GAACGGAAGCAGAGAGTCGC 61.074 60.000 0.00 0.00 0.00 5.19
972 2039 0.794981 CGAACGGAAGCAGAGAGTCG 60.795 60.000 0.00 0.00 0.00 4.18
973 2040 0.241481 ACGAACGGAAGCAGAGAGTC 59.759 55.000 0.00 0.00 0.00 3.36
974 2041 0.241481 GACGAACGGAAGCAGAGAGT 59.759 55.000 0.00 0.00 0.00 3.24
975 2042 0.456995 GGACGAACGGAAGCAGAGAG 60.457 60.000 0.00 0.00 0.00 3.20
976 2043 1.176619 TGGACGAACGGAAGCAGAGA 61.177 55.000 0.00 0.00 0.00 3.10
977 2044 0.734253 CTGGACGAACGGAAGCAGAG 60.734 60.000 0.00 0.00 0.00 3.35
1545 2622 1.376424 CTCGCTGTTGGTGAGCCAT 60.376 57.895 0.00 0.00 45.56 4.40
1608 2685 1.834822 GCTGAGGAGCCTCCGGTAT 60.835 63.158 13.69 0.00 42.75 2.73
1714 3040 1.696884 TCAGCACCATGGTCTGTAACA 59.303 47.619 28.45 16.05 0.00 2.41
1723 3049 0.107361 TGCAGAGATCAGCACCATGG 60.107 55.000 11.19 11.19 33.35 3.66
1754 3080 4.985538 AGACCGATCAAGTTAACGAGAT 57.014 40.909 13.41 13.41 0.00 2.75
1770 3096 1.605058 ATCTCCGTGGACCAAGACCG 61.605 60.000 9.22 1.94 0.00 4.79
1906 3235 8.349245 CGGGTGTGCTTGATAAAATCATTATTA 58.651 33.333 0.00 0.00 39.39 0.98
1907 3236 7.068103 TCGGGTGTGCTTGATAAAATCATTATT 59.932 33.333 0.00 0.00 39.39 1.40
1927 3256 1.484653 TGTGGAGATGGTAATCGGGTG 59.515 52.381 0.00 0.00 37.92 4.61
1938 3267 7.039313 ACATTTCATCATCATTGTGGAGATG 57.961 36.000 0.00 0.00 42.25 2.90
1993 3323 4.070552 GAGTGACGCGAGGGCCTT 62.071 66.667 15.93 0.00 35.02 4.35
2040 3383 5.104318 GGATTTCATACAAGTCTCCCCTTCT 60.104 44.000 0.00 0.00 0.00 2.85
2044 3387 4.503714 TGGATTTCATACAAGTCTCCCC 57.496 45.455 0.00 0.00 0.00 4.81
2107 3474 8.658609 CCCACATGAATGTTGTCAAATAATTTC 58.341 33.333 0.00 0.00 39.39 2.17
2158 3525 2.553602 TGCATCGAGTTTTGTGCTGATT 59.446 40.909 7.83 0.00 38.37 2.57
2159 3526 2.095567 GTGCATCGAGTTTTGTGCTGAT 60.096 45.455 7.83 0.00 38.37 2.90
2160 3527 1.264020 GTGCATCGAGTTTTGTGCTGA 59.736 47.619 7.83 0.00 38.37 4.26
2161 3528 1.002576 TGTGCATCGAGTTTTGTGCTG 60.003 47.619 7.83 0.00 38.37 4.41
2162 3529 1.308047 TGTGCATCGAGTTTTGTGCT 58.692 45.000 7.83 0.00 38.37 4.40
2163 3530 2.336554 ATGTGCATCGAGTTTTGTGC 57.663 45.000 0.00 0.00 38.05 4.57
2165 3532 5.700832 TCTCTAAATGTGCATCGAGTTTTGT 59.299 36.000 0.00 0.00 0.00 2.83
2166 3533 6.017933 GTCTCTAAATGTGCATCGAGTTTTG 58.982 40.000 0.00 0.00 0.00 2.44
2167 3534 5.934625 AGTCTCTAAATGTGCATCGAGTTTT 59.065 36.000 0.00 0.00 0.00 2.43
2222 3589 7.334421 GTGTCAAAAGACTATCATCCAAAGCTA 59.666 37.037 0.00 0.00 0.00 3.32
2223 3590 6.150140 GTGTCAAAAGACTATCATCCAAAGCT 59.850 38.462 0.00 0.00 0.00 3.74
2246 3614 7.621428 AAGACAAGATCAAATGTGGATAGTG 57.379 36.000 3.87 0.00 0.00 2.74
2281 3649 9.905713 TCAGCTCCTAATTCAACTTACATTAAT 57.094 29.630 0.00 0.00 0.00 1.40
2282 3650 9.733556 TTCAGCTCCTAATTCAACTTACATTAA 57.266 29.630 0.00 0.00 0.00 1.40
2283 3651 9.905713 ATTCAGCTCCTAATTCAACTTACATTA 57.094 29.630 0.00 0.00 0.00 1.90
2284 3652 8.814038 ATTCAGCTCCTAATTCAACTTACATT 57.186 30.769 0.00 0.00 0.00 2.71
2285 3653 8.814038 AATTCAGCTCCTAATTCAACTTACAT 57.186 30.769 0.00 0.00 0.00 2.29
2286 3654 8.635765 AAATTCAGCTCCTAATTCAACTTACA 57.364 30.769 0.00 0.00 0.00 2.41
2287 3655 9.561270 GAAAATTCAGCTCCTAATTCAACTTAC 57.439 33.333 0.00 0.00 0.00 2.34
2300 3668 6.332735 ACAACCTTAAGAAAATTCAGCTCC 57.667 37.500 3.36 0.00 0.00 4.70
2309 3677 7.575414 TGCTTGATGTACAACCTTAAGAAAA 57.425 32.000 3.36 0.00 34.56 2.29
2313 3681 7.144722 TCAATGCTTGATGTACAACCTTAAG 57.855 36.000 0.00 0.00 34.08 1.85
2427 3796 5.069251 GCATCTATGTACTGGGTAGACTTGT 59.931 44.000 0.00 0.00 0.00 3.16
2431 3800 3.895656 TGGCATCTATGTACTGGGTAGAC 59.104 47.826 0.00 0.00 0.00 2.59
2462 3832 3.890756 TGTTGCACTGATCAACCAAAGAT 59.109 39.130 0.00 0.00 42.17 2.40
2466 3836 4.462508 TTTTGTTGCACTGATCAACCAA 57.537 36.364 0.00 0.00 42.17 3.67
2508 3878 7.785506 GGATACTCCAGGCCTGTTATATACTAT 59.214 40.741 30.63 12.84 36.28 2.12
2509 3879 7.124052 GGATACTCCAGGCCTGTTATATACTA 58.876 42.308 30.63 8.90 36.28 1.82
2510 3880 5.958987 GGATACTCCAGGCCTGTTATATACT 59.041 44.000 30.63 7.90 36.28 2.12
2511 3881 5.720041 TGGATACTCCAGGCCTGTTATATAC 59.280 44.000 30.63 22.71 42.67 1.47
2512 3882 5.910931 TGGATACTCCAGGCCTGTTATATA 58.089 41.667 30.63 15.45 42.67 0.86
2513 3883 4.763355 TGGATACTCCAGGCCTGTTATAT 58.237 43.478 30.63 22.34 42.67 0.86
2514 3884 4.207698 TGGATACTCCAGGCCTGTTATA 57.792 45.455 30.63 18.86 42.67 0.98
2515 3885 3.060479 TGGATACTCCAGGCCTGTTAT 57.940 47.619 30.63 22.03 42.67 1.89
2516 3886 2.561209 TGGATACTCCAGGCCTGTTA 57.439 50.000 30.63 18.50 42.67 2.41
2517 3887 3.417330 TGGATACTCCAGGCCTGTT 57.583 52.632 30.63 16.93 42.67 3.16
2526 3896 9.403583 TGTTGTTTTCCTATTTATGGATACTCC 57.596 33.333 0.00 0.00 36.96 3.85
2540 3910 9.522804 GTGTCATATTTTGTTGTTGTTTTCCTA 57.477 29.630 0.00 0.00 0.00 2.94
2541 3911 8.257306 AGTGTCATATTTTGTTGTTGTTTTCCT 58.743 29.630 0.00 0.00 0.00 3.36
2542 3912 8.327429 CAGTGTCATATTTTGTTGTTGTTTTCC 58.673 33.333 0.00 0.00 0.00 3.13
2543 3913 8.327429 CCAGTGTCATATTTTGTTGTTGTTTTC 58.673 33.333 0.00 0.00 0.00 2.29
2544 3914 8.037758 TCCAGTGTCATATTTTGTTGTTGTTTT 58.962 29.630 0.00 0.00 0.00 2.43
2545 3915 7.551585 TCCAGTGTCATATTTTGTTGTTGTTT 58.448 30.769 0.00 0.00 0.00 2.83
2546 3916 7.106439 TCCAGTGTCATATTTTGTTGTTGTT 57.894 32.000 0.00 0.00 0.00 2.83
2547 3917 6.707440 TCCAGTGTCATATTTTGTTGTTGT 57.293 33.333 0.00 0.00 0.00 3.32
2548 3918 8.417780 TTTTCCAGTGTCATATTTTGTTGTTG 57.582 30.769 0.00 0.00 0.00 3.33
2557 3927 9.706691 CCGTACTATATTTTCCAGTGTCATATT 57.293 33.333 0.00 0.00 0.00 1.28
2558 3928 7.817962 GCCGTACTATATTTTCCAGTGTCATAT 59.182 37.037 0.00 0.00 0.00 1.78
2559 3929 7.149973 GCCGTACTATATTTTCCAGTGTCATA 58.850 38.462 0.00 0.00 0.00 2.15
2560 3930 5.989777 GCCGTACTATATTTTCCAGTGTCAT 59.010 40.000 0.00 0.00 0.00 3.06
2561 3931 5.105269 TGCCGTACTATATTTTCCAGTGTCA 60.105 40.000 0.00 0.00 0.00 3.58
2562 3932 5.353938 TGCCGTACTATATTTTCCAGTGTC 58.646 41.667 0.00 0.00 0.00 3.67
2563 3933 5.347620 TGCCGTACTATATTTTCCAGTGT 57.652 39.130 0.00 0.00 0.00 3.55
2564 3934 6.223852 AGATGCCGTACTATATTTTCCAGTG 58.776 40.000 0.00 0.00 0.00 3.66
2565 3935 6.267928 AGAGATGCCGTACTATATTTTCCAGT 59.732 38.462 0.00 0.00 0.00 4.00
2566 3936 6.692486 AGAGATGCCGTACTATATTTTCCAG 58.308 40.000 0.00 0.00 0.00 3.86
2567 3937 6.295123 GGAGAGATGCCGTACTATATTTTCCA 60.295 42.308 0.00 0.00 0.00 3.53
2568 3938 6.071278 AGGAGAGATGCCGTACTATATTTTCC 60.071 42.308 0.00 0.00 0.00 3.13
2569 3939 6.926313 AGGAGAGATGCCGTACTATATTTTC 58.074 40.000 0.00 0.00 0.00 2.29
2570 3940 6.919775 AGGAGAGATGCCGTACTATATTTT 57.080 37.500 0.00 0.00 0.00 1.82
2571 3941 6.919775 AAGGAGAGATGCCGTACTATATTT 57.080 37.500 0.00 0.00 0.00 1.40
2572 3942 6.349445 CGAAAGGAGAGATGCCGTACTATATT 60.349 42.308 0.00 0.00 0.00 1.28
2573 3943 5.124138 CGAAAGGAGAGATGCCGTACTATAT 59.876 44.000 0.00 0.00 0.00 0.86
2574 3944 4.454847 CGAAAGGAGAGATGCCGTACTATA 59.545 45.833 0.00 0.00 0.00 1.31
2575 3945 3.253677 CGAAAGGAGAGATGCCGTACTAT 59.746 47.826 0.00 0.00 0.00 2.12
2576 3946 2.617308 CGAAAGGAGAGATGCCGTACTA 59.383 50.000 0.00 0.00 0.00 1.82
2577 3947 1.405821 CGAAAGGAGAGATGCCGTACT 59.594 52.381 0.00 0.00 0.00 2.73
2578 3948 1.841450 CGAAAGGAGAGATGCCGTAC 58.159 55.000 0.00 0.00 0.00 3.67
2592 3962 5.276868 CGTGTGAGCCTTATAAATCCGAAAG 60.277 44.000 0.00 0.00 0.00 2.62
2593 3963 4.569162 CGTGTGAGCCTTATAAATCCGAAA 59.431 41.667 0.00 0.00 0.00 3.46
2594 3964 4.116961 CGTGTGAGCCTTATAAATCCGAA 58.883 43.478 0.00 0.00 0.00 4.30
2595 3965 3.131577 ACGTGTGAGCCTTATAAATCCGA 59.868 43.478 0.00 0.00 0.00 4.55
2596 3966 3.454375 ACGTGTGAGCCTTATAAATCCG 58.546 45.455 0.00 0.00 0.00 4.18
2597 3967 5.638234 GGATACGTGTGAGCCTTATAAATCC 59.362 44.000 0.00 0.00 0.00 3.01
2598 3968 6.456501 AGGATACGTGTGAGCCTTATAAATC 58.543 40.000 0.00 0.00 46.39 2.17
2599 3969 6.420913 AGGATACGTGTGAGCCTTATAAAT 57.579 37.500 0.00 0.00 46.39 1.40
2600 3970 5.864418 AGGATACGTGTGAGCCTTATAAA 57.136 39.130 0.00 0.00 46.39 1.40
2601 3971 5.864418 AAGGATACGTGTGAGCCTTATAA 57.136 39.130 4.56 0.00 46.39 0.98
2602 3972 5.864418 AAAGGATACGTGTGAGCCTTATA 57.136 39.130 6.77 0.00 46.39 0.98
2603 3973 4.755266 AAAGGATACGTGTGAGCCTTAT 57.245 40.909 6.77 0.00 46.39 1.73
2604 3974 4.546829 AAAAGGATACGTGTGAGCCTTA 57.453 40.909 6.77 0.00 46.39 2.69
2605 3975 3.418684 AAAAGGATACGTGTGAGCCTT 57.581 42.857 0.48 0.48 46.39 4.35
2606 3976 3.418684 AAAAAGGATACGTGTGAGCCT 57.581 42.857 0.00 0.00 46.39 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.