Multiple sequence alignment - TraesCS4B01G098400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G098400 chr4B 100.000 4721 0 0 1 4721 103553906 103558626 0.000000e+00 8719.0
1 TraesCS4B01G098400 chr4B 83.333 102 17 0 1854 1955 171811927 171811826 1.400000e-15 95.3
2 TraesCS4B01G098400 chr4D 95.993 2446 72 13 864 3302 69937429 69935003 0.000000e+00 3951.0
3 TraesCS4B01G098400 chr4D 95.186 457 13 4 3529 3976 69937705 69938161 0.000000e+00 713.0
4 TraesCS4B01G098400 chr4D 93.956 182 7 2 696 876 69934433 69934611 6.020000e-69 272.0
5 TraesCS4B01G098400 chr4D 91.327 196 11 1 3294 3483 69937512 69937707 3.620000e-66 263.0
6 TraesCS4B01G098400 chr4A 94.003 1184 53 6 3113 4285 522167934 522169110 0.000000e+00 1777.0
7 TraesCS4B01G098400 chr4A 94.831 1064 44 7 804 1859 522165415 522166475 0.000000e+00 1650.0
8 TraesCS4B01G098400 chr4A 97.521 726 13 2 1961 2685 522166473 522167194 0.000000e+00 1236.0
9 TraesCS4B01G098400 chr4A 91.111 315 22 4 2682 2991 522167622 522167935 5.650000e-114 422.0
10 TraesCS4B01G098400 chr4A 97.222 108 3 0 696 803 522160915 522161022 2.900000e-42 183.0
11 TraesCS4B01G098400 chr2B 87.619 420 11 9 1 379 790367002 790366583 2.590000e-122 449.0
12 TraesCS4B01G098400 chr2B 88.750 320 25 2 383 702 790365634 790365326 9.590000e-102 381.0
13 TraesCS4B01G098400 chr2B 92.908 141 8 2 4583 4721 353573465 353573605 2.230000e-48 204.0
14 TraesCS4B01G098400 chr2B 96.000 100 4 0 379 478 790366550 790366451 3.780000e-36 163.0
15 TraesCS4B01G098400 chr2B 93.023 86 4 2 478 561 790365759 790365674 1.780000e-24 124.0
16 TraesCS4B01G098400 chr2B 79.720 143 26 3 4450 4590 14348039 14348180 3.010000e-17 100.0
17 TraesCS4B01G098400 chr3D 86.834 319 34 4 379 696 202382562 202382873 2.700000e-92 350.0
18 TraesCS4B01G098400 chr3D 86.667 240 9 11 163 379 202382293 202382532 1.310000e-60 244.0
19 TraesCS4B01G098400 chr3D 84.071 226 28 8 1495 1714 19326857 19326634 1.330000e-50 211.0
20 TraesCS4B01G098400 chr3D 80.753 239 27 12 1494 1716 13587204 13587439 8.120000e-38 169.0
21 TraesCS4B01G098400 chr7A 82.324 413 27 20 1 379 299480616 299481016 2.740000e-82 316.0
22 TraesCS4B01G098400 chr7A 80.000 135 26 1 4449 4583 595290896 595291029 1.080000e-16 99.0
23 TraesCS4B01G098400 chr2A 85.404 322 28 6 379 697 581950047 581950352 2.740000e-82 316.0
24 TraesCS4B01G098400 chr2A 81.840 424 32 11 1 379 581949595 581950018 9.860000e-82 315.0
25 TraesCS4B01G098400 chr2A 92.308 143 10 1 4575 4717 451965365 451965224 8.010000e-48 202.0
26 TraesCS4B01G098400 chr7D 84.735 321 37 6 379 696 591969053 591968742 1.280000e-80 311.0
27 TraesCS4B01G098400 chr7D 81.040 327 29 12 1 295 591970912 591970587 3.670000e-56 230.0
28 TraesCS4B01G098400 chr7D 84.746 118 16 2 1851 1968 76792498 76792613 2.980000e-22 117.0
29 TraesCS4B01G098400 chr7D 85.294 102 13 2 1868 1967 110793338 110793237 2.320000e-18 104.0
30 TraesCS4B01G098400 chr7D 90.698 43 4 0 655 697 180256979 180256937 1.830000e-04 58.4
31 TraesCS4B01G098400 chr7D 100.000 30 0 0 278 307 591970593 591970564 6.600000e-04 56.5
32 TraesCS4B01G098400 chr1A 82.082 413 28 20 1 379 551520733 551521133 1.280000e-80 311.0
33 TraesCS4B01G098400 chr1A 82.082 413 28 20 1 379 568522775 568522375 1.280000e-80 311.0
34 TraesCS4B01G098400 chr1A 93.750 144 8 1 4578 4721 481651111 481650969 1.030000e-51 215.0
35 TraesCS4B01G098400 chr1A 96.094 128 5 0 4589 4716 486045774 486045901 4.790000e-50 209.0
36 TraesCS4B01G098400 chr1A 92.958 142 9 1 4576 4717 298310442 298310302 6.190000e-49 206.0
37 TraesCS4B01G098400 chr1A 82.692 104 18 0 1853 1956 559933935 559934038 5.030000e-15 93.5
38 TraesCS4B01G098400 chr1A 92.453 53 3 1 649 701 89444031 89444082 1.820000e-09 75.0
39 TraesCS4B01G098400 chr6B 96.094 128 5 0 4589 4716 207511026 207510899 4.790000e-50 209.0
40 TraesCS4B01G098400 chr6B 82.222 90 14 2 1593 1680 490639415 490639326 5.070000e-10 76.8
41 TraesCS4B01G098400 chr6A 94.737 133 7 0 4589 4721 554386255 554386123 1.720000e-49 207.0
42 TraesCS4B01G098400 chr5B 84.685 222 18 10 1494 1708 423798726 423798514 1.720000e-49 207.0
43 TraesCS4B01G098400 chr5B 91.667 144 11 1 4573 4716 681730801 681730943 1.040000e-46 198.0
44 TraesCS4B01G098400 chr3B 93.478 138 9 0 4580 4717 748784748 748784611 6.190000e-49 206.0
45 TraesCS4B01G098400 chr3B 83.636 110 16 2 1854 1963 52786718 52786611 8.360000e-18 102.0
46 TraesCS4B01G098400 chr3B 86.364 88 12 0 1868 1955 620663851 620663764 3.890000e-16 97.1
47 TraesCS4B01G098400 chr5A 83.598 189 24 7 1488 1673 602242451 602242267 2.260000e-38 171.0
48 TraesCS4B01G098400 chr6D 80.603 232 33 11 1494 1720 362905664 362905888 8.120000e-38 169.0
49 TraesCS4B01G098400 chr6D 82.787 122 18 2 1489 1609 256322118 256322237 6.460000e-19 106.0
50 TraesCS4B01G098400 chr6D 86.022 93 11 2 1590 1680 329853043 329853135 1.080000e-16 99.0
51 TraesCS4B01G098400 chr5D 79.487 234 35 7 1494 1716 3961136 3960905 2.280000e-33 154.0
52 TraesCS4B01G098400 chr5D 84.762 105 15 1 1854 1957 24064224 24064328 2.320000e-18 104.0
53 TraesCS4B01G098400 chr2D 84.821 112 15 2 1852 1963 154954307 154954198 1.390000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G098400 chr4B 103553906 103558626 4720 False 8719.00 8719 100.000000 1 4721 1 chr4B.!!$F1 4720
1 TraesCS4B01G098400 chr4D 69935003 69937429 2426 True 3951.00 3951 95.993000 864 3302 1 chr4D.!!$R1 2438
2 TraesCS4B01G098400 chr4D 69934433 69938161 3728 False 416.00 713 93.489667 696 3976 3 chr4D.!!$F1 3280
3 TraesCS4B01G098400 chr4A 522165415 522169110 3695 False 1271.25 1777 94.366500 804 4285 4 chr4A.!!$F2 3481
4 TraesCS4B01G098400 chr2B 790365326 790367002 1676 True 279.25 449 91.348000 1 702 4 chr2B.!!$R1 701
5 TraesCS4B01G098400 chr3D 202382293 202382873 580 False 297.00 350 86.750500 163 696 2 chr3D.!!$F2 533
6 TraesCS4B01G098400 chr2A 581949595 581950352 757 False 315.50 316 83.622000 1 697 2 chr2A.!!$F1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 1.202177 GGTCATGTAATGTTGGCGCAG 60.202 52.381 10.83 0.0 46.80 5.18 F
410 1398 1.837439 AGTTGGGATTGCTACATCCGA 59.163 47.619 4.63 0.0 37.83 4.55 F
541 1530 1.893137 GGGTGGGCTTTAGGAAAGTTG 59.107 52.381 1.25 0.0 40.64 3.16 F
1881 4313 1.597663 CCATCGGGAATTACTTGTCGC 59.402 52.381 0.00 0.0 35.59 5.19 F
2816 5864 0.906066 TGGGCCATTGCGACTAGTAA 59.094 50.000 0.00 0.0 38.85 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1012 2639 0.039617 TGCGCCATTTTCGGACAAAG 60.040 50.000 4.18 0.00 0.00 2.77 R
1866 4298 1.729284 TTCCGCGACAAGTAATTCCC 58.271 50.000 8.23 0.00 0.00 3.97 R
1939 4371 1.771255 CTCCTCCTCCATCCGGAATTT 59.229 52.381 9.01 0.00 42.21 1.82 R
3699 7117 2.975799 CGAACACAACCACCCGGG 60.976 66.667 22.25 22.25 44.81 5.73 R
4588 8014 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.202177 GGTCATGTAATGTTGGCGCAG 60.202 52.381 10.83 0.00 46.80 5.18
188 211 3.055891 ACCAGCACCATGAAATTTAAGCC 60.056 43.478 0.00 0.00 0.00 4.35
371 1255 4.141892 GGGAGATAGAGATGGAGCATCATG 60.142 50.000 0.00 0.00 42.72 3.07
372 1256 4.141892 GGAGATAGAGATGGAGCATCATGG 60.142 50.000 0.00 0.00 42.72 3.66
373 1257 3.198200 AGATAGAGATGGAGCATCATGGC 59.802 47.826 0.00 0.00 42.72 4.40
375 1259 2.617658 AGAGATGGAGCATCATGGCTA 58.382 47.619 0.00 0.00 45.99 3.93
376 1260 2.568062 AGAGATGGAGCATCATGGCTAG 59.432 50.000 0.00 0.00 45.99 3.42
377 1261 2.566279 GAGATGGAGCATCATGGCTAGA 59.434 50.000 0.00 0.00 45.99 2.43
399 1316 4.752063 AGGGCTTTAGAAAAGTTGGGATT 58.248 39.130 1.72 0.00 0.00 3.01
406 1394 7.577616 GCTTTAGAAAAGTTGGGATTGCTACAT 60.578 37.037 1.72 0.00 0.00 2.29
410 1398 1.837439 AGTTGGGATTGCTACATCCGA 59.163 47.619 4.63 0.00 37.83 4.55
487 1476 2.106166 AGAGAGATTGACATGGGCATCC 59.894 50.000 0.00 0.00 0.00 3.51
541 1530 1.893137 GGGTGGGCTTTAGGAAAGTTG 59.107 52.381 1.25 0.00 40.64 3.16
555 1544 4.163458 AGGAAAGTTGGGATCGCTACATAA 59.837 41.667 22.37 1.75 0.00 1.90
556 1545 4.511826 GGAAAGTTGGGATCGCTACATAAG 59.488 45.833 22.37 0.00 0.00 1.73
557 1546 3.753294 AGTTGGGATCGCTACATAAGG 57.247 47.619 22.37 0.00 0.00 2.69
558 1547 3.305720 AGTTGGGATCGCTACATAAGGA 58.694 45.455 22.37 0.00 0.00 3.36
559 1548 3.709653 AGTTGGGATCGCTACATAAGGAA 59.290 43.478 22.37 0.00 0.00 3.36
561 1550 4.336889 TGGGATCGCTACATAAGGAAAG 57.663 45.455 11.46 0.00 0.00 2.62
562 1551 3.709653 TGGGATCGCTACATAAGGAAAGT 59.290 43.478 11.46 0.00 0.00 2.66
563 1552 4.163458 TGGGATCGCTACATAAGGAAAGTT 59.837 41.667 11.46 0.00 0.00 2.66
564 1553 4.511826 GGGATCGCTACATAAGGAAAGTTG 59.488 45.833 1.84 0.00 0.00 3.16
565 1554 4.511826 GGATCGCTACATAAGGAAAGTTGG 59.488 45.833 0.00 0.00 0.00 3.77
566 1555 3.869065 TCGCTACATAAGGAAAGTTGGG 58.131 45.455 0.00 0.00 0.00 4.12
574 1563 2.286365 AGGAAAGTTGGGATCGCAAA 57.714 45.000 24.94 8.42 0.00 3.68
620 1609 3.424433 GGAATTAGCGGCGGAAAATATCG 60.424 47.826 9.78 0.00 0.00 2.92
631 1620 2.572290 GAAAATATCGGGGAGGGTGTG 58.428 52.381 0.00 0.00 0.00 3.82
665 1654 2.019951 GGAGCGAGCGAACGAAACA 61.020 57.895 5.91 0.00 35.09 2.83
680 1669 3.243975 ACGAAACAATGTACGGACTCCTT 60.244 43.478 14.75 0.00 0.00 3.36
920 2547 2.561569 ACAAAGCAGGTACGCATATCC 58.438 47.619 0.00 0.00 0.00 2.59
938 2565 2.223745 TCCGCCTTGTGTTTAAGTTCC 58.776 47.619 0.00 0.00 0.00 3.62
1012 2639 6.640518 TCTATCTCAAACATGGTGGTACTTC 58.359 40.000 0.00 0.00 0.00 3.01
1029 2656 2.031157 ACTTCTTTGTCCGAAAATGGCG 60.031 45.455 0.00 0.00 0.00 5.69
1128 2755 7.836479 ATATCCTAGGAAGGTACTACAACAC 57.164 40.000 17.30 0.00 44.09 3.32
1310 2942 8.385858 CGCATGTCATACCAAGAAGATTATATG 58.614 37.037 0.00 0.00 0.00 1.78
1338 2970 3.369175 AGATGCATCCTACAGTGACTCA 58.631 45.455 23.06 0.00 0.00 3.41
1420 3052 6.414732 CCCTATTTCTGGTCAAATCTGTACA 58.585 40.000 0.00 0.00 0.00 2.90
1703 4133 3.893200 GCAAACTTTTAAGGGGGTGTACT 59.107 43.478 0.00 0.00 0.00 2.73
1716 4146 2.552743 GGGTGTACTGAAGCAAAACTCC 59.447 50.000 0.00 0.00 0.00 3.85
1726 4156 7.597386 ACTGAAGCAAAACTCCTTTTCATATC 58.403 34.615 0.00 0.00 0.00 1.63
1866 4298 4.989168 GCCTACAAAATACTACCTCCATCG 59.011 45.833 0.00 0.00 0.00 3.84
1881 4313 1.597663 CCATCGGGAATTACTTGTCGC 59.402 52.381 0.00 0.00 35.59 5.19
1893 4325 2.550978 ACTTGTCGCGGAAATGGATAG 58.449 47.619 6.13 0.00 0.00 2.08
1998 4610 3.513909 ATATATGTGCATGCACCCAGT 57.486 42.857 40.01 27.03 45.63 4.00
2768 5816 6.153510 AGGGATTTCTTTGGCTTCTAATTCAC 59.846 38.462 0.00 0.00 0.00 3.18
2816 5864 0.906066 TGGGCCATTGCGACTAGTAA 59.094 50.000 0.00 0.00 38.85 2.24
3105 6403 6.604396 TGATACGTAAAGACTATGGTCCAAGA 59.396 38.462 5.47 0.00 43.05 3.02
3131 6429 7.461182 TTTTCTTTTAAATGGCTGCTAGCTA 57.539 32.000 17.23 1.31 41.99 3.32
3178 6479 7.106439 TGTTTTGGACATAAACTGAACATGT 57.894 32.000 0.00 0.00 36.64 3.21
3205 6506 2.951229 AACATGGGAGTTCCTTTCGT 57.049 45.000 0.00 0.00 36.20 3.85
3335 6742 7.421530 TGCTCTTTGTAATACAACTGTTCTC 57.578 36.000 5.19 0.00 37.90 2.87
3363 6780 5.555017 ACATTTGTGTTGCAGAGTAGAGAT 58.445 37.500 0.00 0.00 0.00 2.75
3417 6834 7.504926 TGATAACATTGGTCTTACTAGGGTT 57.495 36.000 0.00 0.00 0.00 4.11
3603 7020 5.428457 TGATACAAGTGGTGGAGGTTATGAT 59.572 40.000 0.00 0.00 0.00 2.45
3699 7117 1.109323 GCATGTTCCACTATGGGGGC 61.109 60.000 0.00 0.00 38.32 5.80
3867 7285 4.164796 TGGCAGAGGATTCAATCACTATGT 59.835 41.667 0.00 0.00 0.00 2.29
3877 7295 9.113838 GGATTCAATCACTATGTCAGTTAACAT 57.886 33.333 8.61 0.00 42.41 2.71
3949 7375 3.040147 ACAGGTTCATAACTGGTCACG 57.960 47.619 0.00 0.00 39.00 4.35
3970 7396 3.674138 CGGCTCACCTTTTGAATGATTGG 60.674 47.826 0.00 0.00 32.21 3.16
4002 7428 8.541899 ACCCAAAAGAAGGTTAACTTTTCATA 57.458 30.769 18.79 0.00 42.08 2.15
4031 7457 4.130118 AGAGAAGCAAACGAGTTCAACAT 58.870 39.130 0.00 0.00 0.00 2.71
4051 7477 7.507616 TCAACATGGGTTACAATTTAACTCCTT 59.492 33.333 0.00 5.27 34.87 3.36
4106 7532 2.809696 CGTAAAGCTTCCCCTCGAAAAA 59.190 45.455 0.00 0.00 0.00 1.94
4118 7544 2.035449 CCTCGAAAAACAAAAGGACCCC 59.965 50.000 0.00 0.00 0.00 4.95
4140 7566 4.935808 CCGTAAAGCTTAACTCAAGTCCAT 59.064 41.667 0.00 0.00 36.55 3.41
4141 7567 5.163854 CCGTAAAGCTTAACTCAAGTCCATG 60.164 44.000 0.00 0.00 36.55 3.66
4192 7618 6.147821 CAGAAAGATGTCACGATACAAAACCT 59.852 38.462 0.00 0.00 32.02 3.50
4223 7649 9.974980 AATTTTTCAACTATTGTACACGGATTT 57.025 25.926 0.00 0.00 0.00 2.17
4247 7673 3.971245 AGAGCCACTAAACTTCTCCAG 57.029 47.619 0.00 0.00 0.00 3.86
4248 7674 2.569404 AGAGCCACTAAACTTCTCCAGG 59.431 50.000 0.00 0.00 0.00 4.45
4260 7686 3.906846 ACTTCTCCAGGTTGTGAAGATCT 59.093 43.478 15.76 0.00 39.17 2.75
4289 7715 7.477144 TGTAGAGTCCATACATTTTATTGCG 57.523 36.000 0.00 0.00 0.00 4.85
4290 7716 7.269316 TGTAGAGTCCATACATTTTATTGCGA 58.731 34.615 0.00 0.00 0.00 5.10
4291 7717 6.851222 AGAGTCCATACATTTTATTGCGAG 57.149 37.500 0.00 0.00 0.00 5.03
4292 7718 5.760253 AGAGTCCATACATTTTATTGCGAGG 59.240 40.000 0.00 0.00 0.00 4.63
4293 7719 4.821805 AGTCCATACATTTTATTGCGAGGG 59.178 41.667 0.00 0.00 0.00 4.30
4294 7720 4.578928 GTCCATACATTTTATTGCGAGGGT 59.421 41.667 0.00 0.00 0.00 4.34
4295 7721 4.819630 TCCATACATTTTATTGCGAGGGTC 59.180 41.667 0.00 0.00 0.00 4.46
4296 7722 4.821805 CCATACATTTTATTGCGAGGGTCT 59.178 41.667 0.00 0.00 0.00 3.85
4297 7723 5.277974 CCATACATTTTATTGCGAGGGTCTG 60.278 44.000 0.00 0.00 0.00 3.51
4298 7724 3.950397 ACATTTTATTGCGAGGGTCTGA 58.050 40.909 0.00 0.00 0.00 3.27
4299 7725 3.689649 ACATTTTATTGCGAGGGTCTGAC 59.310 43.478 0.00 0.00 0.00 3.51
4300 7726 3.410631 TTTTATTGCGAGGGTCTGACA 57.589 42.857 10.38 0.00 0.00 3.58
4301 7727 3.410631 TTTATTGCGAGGGTCTGACAA 57.589 42.857 10.38 0.00 0.00 3.18
4302 7728 3.627395 TTATTGCGAGGGTCTGACAAT 57.373 42.857 10.38 2.49 35.31 2.71
4303 7729 4.746535 TTATTGCGAGGGTCTGACAATA 57.253 40.909 10.38 1.55 33.31 1.90
4304 7730 3.627395 ATTGCGAGGGTCTGACAATAA 57.373 42.857 10.38 0.00 0.00 1.40
4305 7731 3.410631 TTGCGAGGGTCTGACAATAAA 57.589 42.857 10.38 0.00 0.00 1.40
4306 7732 3.410631 TGCGAGGGTCTGACAATAAAA 57.589 42.857 10.38 0.00 0.00 1.52
4307 7733 3.950397 TGCGAGGGTCTGACAATAAAAT 58.050 40.909 10.38 0.00 0.00 1.82
4308 7734 5.092554 TGCGAGGGTCTGACAATAAAATA 57.907 39.130 10.38 0.00 0.00 1.40
4309 7735 4.873827 TGCGAGGGTCTGACAATAAAATAC 59.126 41.667 10.38 0.00 0.00 1.89
4310 7736 5.116882 GCGAGGGTCTGACAATAAAATACT 58.883 41.667 10.38 0.00 0.00 2.12
4311 7737 5.234543 GCGAGGGTCTGACAATAAAATACTC 59.765 44.000 10.38 2.43 0.00 2.59
4312 7738 6.338146 CGAGGGTCTGACAATAAAATACTCA 58.662 40.000 10.38 0.00 0.00 3.41
4313 7739 6.986817 CGAGGGTCTGACAATAAAATACTCAT 59.013 38.462 10.38 0.00 0.00 2.90
4314 7740 7.042456 CGAGGGTCTGACAATAAAATACTCATG 60.042 40.741 10.38 0.00 0.00 3.07
4315 7741 7.633789 AGGGTCTGACAATAAAATACTCATGT 58.366 34.615 10.38 0.00 0.00 3.21
4316 7742 8.109634 AGGGTCTGACAATAAAATACTCATGTT 58.890 33.333 10.38 0.00 0.00 2.71
4317 7743 8.184192 GGGTCTGACAATAAAATACTCATGTTG 58.816 37.037 10.38 0.00 0.00 3.33
4318 7744 7.698130 GGTCTGACAATAAAATACTCATGTTGC 59.302 37.037 10.38 0.00 0.00 4.17
4319 7745 7.698130 GTCTGACAATAAAATACTCATGTTGCC 59.302 37.037 2.24 0.00 0.00 4.52
4320 7746 6.550843 TGACAATAAAATACTCATGTTGCCG 58.449 36.000 0.00 0.00 0.00 5.69
4321 7747 5.890334 ACAATAAAATACTCATGTTGCCGG 58.110 37.500 0.00 0.00 0.00 6.13
4322 7748 5.650266 ACAATAAAATACTCATGTTGCCGGA 59.350 36.000 5.05 0.00 0.00 5.14
4323 7749 6.151985 ACAATAAAATACTCATGTTGCCGGAA 59.848 34.615 5.05 0.00 0.00 4.30
4324 7750 6.767524 ATAAAATACTCATGTTGCCGGAAA 57.232 33.333 5.05 0.00 0.00 3.13
4325 7751 5.461032 AAAATACTCATGTTGCCGGAAAA 57.539 34.783 5.05 0.00 0.00 2.29
4326 7752 5.659440 AAATACTCATGTTGCCGGAAAAT 57.341 34.783 5.05 0.00 0.00 1.82
4327 7753 6.767524 AAATACTCATGTTGCCGGAAAATA 57.232 33.333 5.05 0.00 0.00 1.40
4328 7754 6.959639 AATACTCATGTTGCCGGAAAATAT 57.040 33.333 5.05 0.00 0.00 1.28
4329 7755 4.637483 ACTCATGTTGCCGGAAAATATG 57.363 40.909 5.05 12.90 0.00 1.78
4330 7756 4.016444 ACTCATGTTGCCGGAAAATATGT 58.984 39.130 19.49 5.47 30.64 2.29
4331 7757 4.142403 ACTCATGTTGCCGGAAAATATGTG 60.142 41.667 19.49 19.09 30.64 3.21
4332 7758 3.761218 TCATGTTGCCGGAAAATATGTGT 59.239 39.130 19.49 0.00 30.64 3.72
4333 7759 3.567576 TGTTGCCGGAAAATATGTGTG 57.432 42.857 5.05 0.00 0.00 3.82
4334 7760 2.230025 TGTTGCCGGAAAATATGTGTGG 59.770 45.455 5.05 0.00 0.00 4.17
4335 7761 2.208132 TGCCGGAAAATATGTGTGGT 57.792 45.000 5.05 0.00 0.00 4.16
4336 7762 2.088423 TGCCGGAAAATATGTGTGGTC 58.912 47.619 5.05 0.00 0.00 4.02
4337 7763 1.404035 GCCGGAAAATATGTGTGGTCC 59.596 52.381 5.05 0.00 0.00 4.46
4338 7764 2.717390 CCGGAAAATATGTGTGGTCCA 58.283 47.619 0.00 0.00 0.00 4.02
4339 7765 3.287222 CCGGAAAATATGTGTGGTCCAT 58.713 45.455 0.00 0.00 0.00 3.41
4340 7766 4.456535 CCGGAAAATATGTGTGGTCCATA 58.543 43.478 0.00 0.00 0.00 2.74
4341 7767 5.070001 CCGGAAAATATGTGTGGTCCATAT 58.930 41.667 0.00 0.00 37.15 1.78
4342 7768 5.534654 CCGGAAAATATGTGTGGTCCATATT 59.465 40.000 0.00 0.00 43.76 1.28
4367 7793 8.715191 TTTTTATTGACACTCTGCACAAAATT 57.285 26.923 0.00 0.00 0.00 1.82
4368 7794 9.809096 TTTTTATTGACACTCTGCACAAAATTA 57.191 25.926 0.00 0.00 0.00 1.40
4369 7795 8.795786 TTTATTGACACTCTGCACAAAATTAC 57.204 30.769 0.00 0.00 0.00 1.89
4370 7796 5.826601 TTGACACTCTGCACAAAATTACA 57.173 34.783 0.00 0.00 0.00 2.41
4371 7797 5.422666 TGACACTCTGCACAAAATTACAG 57.577 39.130 0.00 0.00 0.00 2.74
4372 7798 4.881273 TGACACTCTGCACAAAATTACAGT 59.119 37.500 0.00 0.00 0.00 3.55
4373 7799 6.052360 TGACACTCTGCACAAAATTACAGTA 58.948 36.000 0.00 0.00 0.00 2.74
4374 7800 6.710295 TGACACTCTGCACAAAATTACAGTAT 59.290 34.615 0.00 0.00 0.00 2.12
4375 7801 7.228507 TGACACTCTGCACAAAATTACAGTATT 59.771 33.333 0.00 0.00 0.00 1.89
4376 7802 7.940850 ACACTCTGCACAAAATTACAGTATTT 58.059 30.769 0.00 0.00 0.00 1.40
4377 7803 7.862372 ACACTCTGCACAAAATTACAGTATTTG 59.138 33.333 5.45 5.45 39.38 2.32
4378 7804 8.075574 CACTCTGCACAAAATTACAGTATTTGA 58.924 33.333 11.91 0.00 37.46 2.69
4379 7805 8.629158 ACTCTGCACAAAATTACAGTATTTGAA 58.371 29.630 11.91 0.28 37.46 2.69
4380 7806 9.630098 CTCTGCACAAAATTACAGTATTTGAAT 57.370 29.630 11.91 0.00 37.46 2.57
4393 7819 8.588290 ACAGTATTTGAATACTCTCTCACTCT 57.412 34.615 12.28 0.00 46.44 3.24
4394 7820 8.682710 ACAGTATTTGAATACTCTCTCACTCTC 58.317 37.037 12.28 0.00 46.44 3.20
4395 7821 8.902806 CAGTATTTGAATACTCTCTCACTCTCT 58.097 37.037 12.28 0.00 46.44 3.10
4396 7822 9.120538 AGTATTTGAATACTCTCTCACTCTCTC 57.879 37.037 9.94 0.00 46.44 3.20
4397 7823 9.120538 GTATTTGAATACTCTCTCACTCTCTCT 57.879 37.037 6.63 0.00 38.53 3.10
4398 7824 7.624360 TTTGAATACTCTCTCACTCTCTCTC 57.376 40.000 0.00 0.00 0.00 3.20
4399 7825 6.306643 TGAATACTCTCTCACTCTCTCTCA 57.693 41.667 0.00 0.00 0.00 3.27
4400 7826 6.716284 TGAATACTCTCTCACTCTCTCTCAA 58.284 40.000 0.00 0.00 0.00 3.02
4401 7827 6.597672 TGAATACTCTCTCACTCTCTCTCAAC 59.402 42.308 0.00 0.00 0.00 3.18
4402 7828 4.640771 ACTCTCTCACTCTCTCTCAACT 57.359 45.455 0.00 0.00 0.00 3.16
4403 7829 4.985538 ACTCTCTCACTCTCTCTCAACTT 58.014 43.478 0.00 0.00 0.00 2.66
4404 7830 5.003804 ACTCTCTCACTCTCTCTCAACTTC 58.996 45.833 0.00 0.00 0.00 3.01
4405 7831 5.221925 ACTCTCTCACTCTCTCTCAACTTCT 60.222 44.000 0.00 0.00 0.00 2.85
4406 7832 6.013725 ACTCTCTCACTCTCTCTCAACTTCTA 60.014 42.308 0.00 0.00 0.00 2.10
4407 7833 6.774673 TCTCTCACTCTCTCTCAACTTCTAA 58.225 40.000 0.00 0.00 0.00 2.10
4408 7834 6.653320 TCTCTCACTCTCTCTCAACTTCTAAC 59.347 42.308 0.00 0.00 0.00 2.34
4409 7835 5.708230 TCTCACTCTCTCTCAACTTCTAACC 59.292 44.000 0.00 0.00 0.00 2.85
4410 7836 5.636123 TCACTCTCTCTCAACTTCTAACCT 58.364 41.667 0.00 0.00 0.00 3.50
4411 7837 6.780901 TCACTCTCTCTCAACTTCTAACCTA 58.219 40.000 0.00 0.00 0.00 3.08
4412 7838 6.655848 TCACTCTCTCTCAACTTCTAACCTAC 59.344 42.308 0.00 0.00 0.00 3.18
4413 7839 5.947566 ACTCTCTCTCAACTTCTAACCTACC 59.052 44.000 0.00 0.00 0.00 3.18
4414 7840 4.942483 TCTCTCTCAACTTCTAACCTACCG 59.058 45.833 0.00 0.00 0.00 4.02
4415 7841 4.914983 TCTCTCAACTTCTAACCTACCGA 58.085 43.478 0.00 0.00 0.00 4.69
4416 7842 4.699257 TCTCTCAACTTCTAACCTACCGAC 59.301 45.833 0.00 0.00 0.00 4.79
4417 7843 4.401022 TCTCAACTTCTAACCTACCGACA 58.599 43.478 0.00 0.00 0.00 4.35
4418 7844 4.828939 TCTCAACTTCTAACCTACCGACAA 59.171 41.667 0.00 0.00 0.00 3.18
4419 7845 5.479375 TCTCAACTTCTAACCTACCGACAAT 59.521 40.000 0.00 0.00 0.00 2.71
4420 7846 6.014840 TCTCAACTTCTAACCTACCGACAATT 60.015 38.462 0.00 0.00 0.00 2.32
4421 7847 6.161381 TCAACTTCTAACCTACCGACAATTC 58.839 40.000 0.00 0.00 0.00 2.17
4422 7848 5.733620 ACTTCTAACCTACCGACAATTCA 57.266 39.130 0.00 0.00 0.00 2.57
4423 7849 6.105397 ACTTCTAACCTACCGACAATTCAA 57.895 37.500 0.00 0.00 0.00 2.69
4424 7850 6.527423 ACTTCTAACCTACCGACAATTCAAA 58.473 36.000 0.00 0.00 0.00 2.69
4425 7851 6.993902 ACTTCTAACCTACCGACAATTCAAAA 59.006 34.615 0.00 0.00 0.00 2.44
4426 7852 7.499895 ACTTCTAACCTACCGACAATTCAAAAA 59.500 33.333 0.00 0.00 0.00 1.94
4505 7931 8.487313 AAAATGTAGTATCAAGCGAATACACA 57.513 30.769 8.30 9.58 0.00 3.72
4506 7932 8.662781 AAATGTAGTATCAAGCGAATACACAT 57.337 30.769 8.30 10.82 31.01 3.21
4507 7933 7.875316 ATGTAGTATCAAGCGAATACACATC 57.125 36.000 8.30 0.00 0.00 3.06
4508 7934 6.801575 TGTAGTATCAAGCGAATACACATCA 58.198 36.000 8.30 1.51 0.00 3.07
4509 7935 6.695713 TGTAGTATCAAGCGAATACACATCAC 59.304 38.462 8.30 0.00 0.00 3.06
4510 7936 4.740205 AGTATCAAGCGAATACACATCACG 59.260 41.667 8.30 0.00 0.00 4.35
4511 7937 3.224884 TCAAGCGAATACACATCACGA 57.775 42.857 0.00 0.00 0.00 4.35
4512 7938 3.780902 TCAAGCGAATACACATCACGAT 58.219 40.909 0.00 0.00 0.00 3.73
4513 7939 3.551485 TCAAGCGAATACACATCACGATG 59.449 43.478 5.48 5.48 44.15 3.84
4514 7940 3.436700 AGCGAATACACATCACGATGA 57.563 42.857 13.83 0.00 41.20 2.92
4515 7941 3.375642 AGCGAATACACATCACGATGAG 58.624 45.455 13.83 8.35 41.20 2.90
4516 7942 2.097202 GCGAATACACATCACGATGAGC 60.097 50.000 13.83 4.15 41.20 4.26
4517 7943 3.115554 CGAATACACATCACGATGAGCA 58.884 45.455 13.83 0.00 41.20 4.26
4518 7944 3.551485 CGAATACACATCACGATGAGCAA 59.449 43.478 13.83 0.00 41.20 3.91
4519 7945 4.548916 CGAATACACATCACGATGAGCAAC 60.549 45.833 13.83 0.88 41.20 4.17
4520 7946 2.168326 ACACATCACGATGAGCAACA 57.832 45.000 13.83 0.00 41.20 3.33
4521 7947 2.703416 ACACATCACGATGAGCAACAT 58.297 42.857 13.83 0.00 41.20 2.71
4527 7953 3.425422 GATGAGCAACATCCGGCC 58.575 61.111 0.00 0.00 46.78 6.13
4528 7954 1.451927 GATGAGCAACATCCGGCCA 60.452 57.895 2.24 0.00 46.78 5.36
4529 7955 1.718757 GATGAGCAACATCCGGCCAC 61.719 60.000 2.24 0.00 46.78 5.01
4530 7956 2.045926 GAGCAACATCCGGCCACT 60.046 61.111 2.24 0.00 0.00 4.00
4531 7957 1.220749 GAGCAACATCCGGCCACTA 59.779 57.895 2.24 0.00 0.00 2.74
4532 7958 1.078426 AGCAACATCCGGCCACTAC 60.078 57.895 2.24 0.00 0.00 2.73
4533 7959 1.376683 GCAACATCCGGCCACTACA 60.377 57.895 2.24 0.00 0.00 2.74
4534 7960 0.748005 GCAACATCCGGCCACTACAT 60.748 55.000 2.24 0.00 0.00 2.29
4535 7961 1.474320 GCAACATCCGGCCACTACATA 60.474 52.381 2.24 0.00 0.00 2.29
4536 7962 2.912771 CAACATCCGGCCACTACATAA 58.087 47.619 2.24 0.00 0.00 1.90
4537 7963 3.476552 CAACATCCGGCCACTACATAAT 58.523 45.455 2.24 0.00 0.00 1.28
4538 7964 3.857157 ACATCCGGCCACTACATAATT 57.143 42.857 2.24 0.00 0.00 1.40
4539 7965 4.967084 ACATCCGGCCACTACATAATTA 57.033 40.909 2.24 0.00 0.00 1.40
4540 7966 4.894784 ACATCCGGCCACTACATAATTAG 58.105 43.478 2.24 0.00 0.00 1.73
4541 7967 4.253685 CATCCGGCCACTACATAATTAGG 58.746 47.826 2.24 0.00 0.00 2.69
4542 7968 3.578978 TCCGGCCACTACATAATTAGGA 58.421 45.455 2.24 0.00 0.00 2.94
4543 7969 4.164981 TCCGGCCACTACATAATTAGGAT 58.835 43.478 2.24 0.00 0.00 3.24
4544 7970 4.020573 TCCGGCCACTACATAATTAGGATG 60.021 45.833 2.24 0.00 0.00 3.51
4545 7971 3.684788 CGGCCACTACATAATTAGGATGC 59.315 47.826 2.24 0.00 0.00 3.91
4546 7972 4.651778 GGCCACTACATAATTAGGATGCA 58.348 43.478 3.76 0.00 0.00 3.96
4547 7973 4.455877 GGCCACTACATAATTAGGATGCAC 59.544 45.833 3.76 0.00 0.00 4.57
4548 7974 5.063204 GCCACTACATAATTAGGATGCACA 58.937 41.667 3.76 0.00 0.00 4.57
4549 7975 5.049405 GCCACTACATAATTAGGATGCACAC 60.049 44.000 3.76 0.00 0.00 3.82
4550 7976 6.054941 CCACTACATAATTAGGATGCACACA 58.945 40.000 3.76 0.00 0.00 3.72
4551 7977 6.203530 CCACTACATAATTAGGATGCACACAG 59.796 42.308 3.76 0.00 0.00 3.66
4552 7978 6.763135 CACTACATAATTAGGATGCACACAGT 59.237 38.462 3.76 0.00 0.00 3.55
4553 7979 6.986817 ACTACATAATTAGGATGCACACAGTC 59.013 38.462 3.76 0.00 0.00 3.51
4554 7980 5.744171 ACATAATTAGGATGCACACAGTCA 58.256 37.500 3.76 0.00 0.00 3.41
4555 7981 6.179756 ACATAATTAGGATGCACACAGTCAA 58.820 36.000 3.76 0.00 0.00 3.18
4556 7982 6.658816 ACATAATTAGGATGCACACAGTCAAA 59.341 34.615 3.76 0.00 0.00 2.69
4557 7983 5.376854 AATTAGGATGCACACAGTCAAAC 57.623 39.130 0.00 0.00 0.00 2.93
4558 7984 2.346766 AGGATGCACACAGTCAAACA 57.653 45.000 0.00 0.00 0.00 2.83
4559 7985 1.949525 AGGATGCACACAGTCAAACAC 59.050 47.619 0.00 0.00 0.00 3.32
4560 7986 1.001378 GGATGCACACAGTCAAACACC 60.001 52.381 0.00 0.00 0.00 4.16
4561 7987 1.675483 GATGCACACAGTCAAACACCA 59.325 47.619 0.00 0.00 0.00 4.17
4562 7988 1.539157 TGCACACAGTCAAACACCAA 58.461 45.000 0.00 0.00 0.00 3.67
4563 7989 1.889170 TGCACACAGTCAAACACCAAA 59.111 42.857 0.00 0.00 0.00 3.28
4564 7990 2.297315 TGCACACAGTCAAACACCAAAA 59.703 40.909 0.00 0.00 0.00 2.44
4565 7991 2.923020 GCACACAGTCAAACACCAAAAG 59.077 45.455 0.00 0.00 0.00 2.27
4566 7992 3.613910 GCACACAGTCAAACACCAAAAGT 60.614 43.478 0.00 0.00 0.00 2.66
4567 7993 4.165779 CACACAGTCAAACACCAAAAGTC 58.834 43.478 0.00 0.00 0.00 3.01
4568 7994 4.079253 ACACAGTCAAACACCAAAAGTCT 58.921 39.130 0.00 0.00 0.00 3.24
4569 7995 4.082787 ACACAGTCAAACACCAAAAGTCTG 60.083 41.667 0.00 0.00 0.00 3.51
4570 7996 4.155826 CACAGTCAAACACCAAAAGTCTGA 59.844 41.667 0.00 0.00 0.00 3.27
4571 7997 4.949856 ACAGTCAAACACCAAAAGTCTGAT 59.050 37.500 0.00 0.00 0.00 2.90
4572 7998 6.038161 CACAGTCAAACACCAAAAGTCTGATA 59.962 38.462 0.00 0.00 0.00 2.15
4573 7999 6.601613 ACAGTCAAACACCAAAAGTCTGATAA 59.398 34.615 0.00 0.00 0.00 1.75
4574 8000 7.122055 ACAGTCAAACACCAAAAGTCTGATAAA 59.878 33.333 0.00 0.00 0.00 1.40
4575 8001 7.973388 CAGTCAAACACCAAAAGTCTGATAAAA 59.027 33.333 0.00 0.00 0.00 1.52
4576 8002 8.527810 AGTCAAACACCAAAAGTCTGATAAAAA 58.472 29.630 0.00 0.00 0.00 1.94
4601 8027 0.320697 AAAAAGACTCCCTCCGTCCG 59.679 55.000 0.00 0.00 31.83 4.79
4602 8028 1.542187 AAAAGACTCCCTCCGTCCGG 61.542 60.000 0.00 0.00 31.83 5.14
4603 8029 2.436596 AAAGACTCCCTCCGTCCGGA 62.437 60.000 0.00 0.00 42.90 5.14
4604 8030 2.362120 GACTCCCTCCGTCCGGAA 60.362 66.667 5.23 0.00 44.66 4.30
4605 8031 1.980772 GACTCCCTCCGTCCGGAAA 60.981 63.158 5.23 0.00 44.66 3.13
4606 8032 1.305887 ACTCCCTCCGTCCGGAAAT 60.306 57.895 5.23 0.00 44.66 2.17
4607 8033 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4608 8034 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4609 8035 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4610 8036 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4611 8037 2.034124 CCCTCCGTCCGGAAATACTTA 58.966 52.381 5.23 0.00 44.66 2.24
4612 8038 2.631545 CCCTCCGTCCGGAAATACTTAT 59.368 50.000 5.23 0.00 44.66 1.73
4613 8039 3.305881 CCCTCCGTCCGGAAATACTTATC 60.306 52.174 5.23 0.00 44.66 1.75
4614 8040 3.319972 CCTCCGTCCGGAAATACTTATCA 59.680 47.826 5.23 0.00 44.66 2.15
4615 8041 4.021368 CCTCCGTCCGGAAATACTTATCAT 60.021 45.833 5.23 0.00 44.66 2.45
4616 8042 5.130292 TCCGTCCGGAAATACTTATCATC 57.870 43.478 5.23 0.00 42.05 2.92
4617 8043 4.585581 TCCGTCCGGAAATACTTATCATCA 59.414 41.667 5.23 0.00 42.05 3.07
4618 8044 5.245301 TCCGTCCGGAAATACTTATCATCAT 59.755 40.000 5.23 0.00 42.05 2.45
4619 8045 6.434965 TCCGTCCGGAAATACTTATCATCATA 59.565 38.462 5.23 0.00 42.05 2.15
4620 8046 7.039574 TCCGTCCGGAAATACTTATCATCATAA 60.040 37.037 5.23 0.00 42.05 1.90
4621 8047 7.764443 CCGTCCGGAAATACTTATCATCATAAT 59.236 37.037 5.23 0.00 37.50 1.28
4622 8048 8.595533 CGTCCGGAAATACTTATCATCATAATG 58.404 37.037 5.23 0.00 0.00 1.90
4623 8049 8.883731 GTCCGGAAATACTTATCATCATAATGG 58.116 37.037 5.23 0.00 33.42 3.16
4624 8050 8.821817 TCCGGAAATACTTATCATCATAATGGA 58.178 33.333 0.00 0.00 33.42 3.41
4625 8051 9.618890 CCGGAAATACTTATCATCATAATGGAT 57.381 33.333 0.00 0.00 33.42 3.41
4632 8058 8.792830 ACTTATCATCATAATGGATAAACGGG 57.207 34.615 0.00 0.00 33.42 5.28
4633 8059 7.829211 ACTTATCATCATAATGGATAAACGGGG 59.171 37.037 0.00 0.00 33.42 5.73
4634 8060 5.834281 TCATCATAATGGATAAACGGGGA 57.166 39.130 0.00 0.00 33.42 4.81
4635 8061 6.387192 TCATCATAATGGATAAACGGGGAT 57.613 37.500 0.00 0.00 33.42 3.85
4636 8062 6.179756 TCATCATAATGGATAAACGGGGATG 58.820 40.000 0.00 0.00 33.42 3.51
4637 8063 5.576563 TCATAATGGATAAACGGGGATGT 57.423 39.130 0.00 0.00 0.00 3.06
4638 8064 6.689663 TCATAATGGATAAACGGGGATGTA 57.310 37.500 0.00 0.00 0.00 2.29
4639 8065 7.265599 TCATAATGGATAAACGGGGATGTAT 57.734 36.000 0.00 0.00 0.00 2.29
4640 8066 7.335627 TCATAATGGATAAACGGGGATGTATC 58.664 38.462 0.00 0.00 0.00 2.24
4641 8067 5.843019 AATGGATAAACGGGGATGTATCT 57.157 39.130 0.00 0.00 0.00 1.98
4642 8068 6.945636 AATGGATAAACGGGGATGTATCTA 57.054 37.500 0.00 0.00 0.00 1.98
4643 8069 5.995565 TGGATAAACGGGGATGTATCTAG 57.004 43.478 0.00 0.00 0.00 2.43
4644 8070 5.647230 TGGATAAACGGGGATGTATCTAGA 58.353 41.667 0.00 0.00 0.00 2.43
4645 8071 5.479375 TGGATAAACGGGGATGTATCTAGAC 59.521 44.000 0.00 0.00 0.00 2.59
4646 8072 5.715753 GGATAAACGGGGATGTATCTAGACT 59.284 44.000 0.00 0.00 0.00 3.24
4647 8073 6.210984 GGATAAACGGGGATGTATCTAGACTT 59.789 42.308 0.00 0.00 0.00 3.01
4648 8074 7.395489 GGATAAACGGGGATGTATCTAGACTTA 59.605 40.741 0.00 0.00 0.00 2.24
4649 8075 8.896722 ATAAACGGGGATGTATCTAGACTTAT 57.103 34.615 0.00 0.00 0.00 1.73
4650 8076 7.613551 AAACGGGGATGTATCTAGACTTATT 57.386 36.000 0.00 0.00 0.00 1.40
4651 8077 7.613551 AACGGGGATGTATCTAGACTTATTT 57.386 36.000 0.00 0.00 0.00 1.40
4652 8078 7.613551 ACGGGGATGTATCTAGACTTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
4653 8079 8.716674 ACGGGGATGTATCTAGACTTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
4654 8080 8.804204 ACGGGGATGTATCTAGACTTATTTTAG 58.196 37.037 0.00 0.00 0.00 1.85
4655 8081 8.804204 CGGGGATGTATCTAGACTTATTTTAGT 58.196 37.037 0.00 0.00 0.00 2.24
4693 8119 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4701 8127 9.865321 ATCCATTTTGATGACAAGTATTTTCAG 57.135 29.630 0.00 0.00 37.32 3.02
4702 8128 9.076781 TCCATTTTGATGACAAGTATTTTCAGA 57.923 29.630 0.00 0.00 37.32 3.27
4703 8129 9.132521 CCATTTTGATGACAAGTATTTTCAGAC 57.867 33.333 0.00 0.00 37.32 3.51
4704 8130 8.843733 CATTTTGATGACAAGTATTTTCAGACG 58.156 33.333 0.00 0.00 37.32 4.18
4705 8131 6.480524 TTGATGACAAGTATTTTCAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
4706 8132 5.789521 TGATGACAAGTATTTTCAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
4707 8133 5.869344 TGATGACAAGTATTTTCAGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
4708 8134 4.566004 TGACAAGTATTTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
4709 8135 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4710 8136 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4711 8137 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4712 8138 3.442076 AGTATTTTCAGACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
4713 8139 4.607239 AGTATTTTCAGACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
4714 8140 3.889520 ATTTTCAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
4715 8141 2.297698 TTTCAGACGGAGGGAGTACA 57.702 50.000 0.00 0.00 0.00 2.90
4716 8142 2.297698 TTCAGACGGAGGGAGTACAA 57.702 50.000 0.00 0.00 0.00 2.41
4717 8143 1.542492 TCAGACGGAGGGAGTACAAC 58.458 55.000 0.00 0.00 0.00 3.32
4718 8144 1.202964 TCAGACGGAGGGAGTACAACA 60.203 52.381 0.00 0.00 0.00 3.33
4719 8145 1.825474 CAGACGGAGGGAGTACAACAT 59.175 52.381 0.00 0.00 0.00 2.71
4720 8146 3.021695 CAGACGGAGGGAGTACAACATA 58.978 50.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 138 0.103208 CGTGTGGCAGATCCTAGGAC 59.897 60.000 15.42 8.43 35.26 3.85
371 1255 4.223556 ACTTTTCTAAAGCCCTCTAGCC 57.776 45.455 0.00 0.00 0.00 3.93
372 1256 4.396478 CCAACTTTTCTAAAGCCCTCTAGC 59.604 45.833 0.00 0.00 0.00 3.42
373 1257 4.944317 CCCAACTTTTCTAAAGCCCTCTAG 59.056 45.833 0.00 0.00 0.00 2.43
374 1258 4.600111 TCCCAACTTTTCTAAAGCCCTCTA 59.400 41.667 0.00 0.00 0.00 2.43
375 1259 3.397955 TCCCAACTTTTCTAAAGCCCTCT 59.602 43.478 0.00 0.00 0.00 3.69
376 1260 3.763057 TCCCAACTTTTCTAAAGCCCTC 58.237 45.455 0.00 0.00 0.00 4.30
377 1261 3.895704 TCCCAACTTTTCTAAAGCCCT 57.104 42.857 0.00 0.00 0.00 5.19
399 1316 3.749088 ACGATTTGTTTTCGGATGTAGCA 59.251 39.130 0.00 0.00 40.83 3.49
406 1394 6.726230 TCAACAATTACGATTTGTTTTCGGA 58.274 32.000 10.75 5.10 40.83 4.55
410 1398 6.202937 TCGCTCAACAATTACGATTTGTTTT 58.797 32.000 10.75 0.00 0.00 2.43
433 1421 1.473278 GATCCCGTCGTATCCCATCTC 59.527 57.143 0.00 0.00 0.00 2.75
541 1530 4.338379 ACTTTCCTTATGTAGCGATCCC 57.662 45.455 0.00 0.00 0.00 3.85
555 1544 2.286365 TTTGCGATCCCAACTTTCCT 57.714 45.000 0.00 0.00 0.00 3.36
556 1545 3.592898 AATTTGCGATCCCAACTTTCC 57.407 42.857 0.00 0.00 0.00 3.13
557 1546 4.987912 TCAAAATTTGCGATCCCAACTTTC 59.012 37.500 8.39 0.00 29.72 2.62
558 1547 4.954875 TCAAAATTTGCGATCCCAACTTT 58.045 34.783 0.00 3.36 31.52 2.66
559 1548 4.559153 CTCAAAATTTGCGATCCCAACTT 58.441 39.130 0.00 0.00 0.00 2.66
561 1550 2.667969 GCTCAAAATTTGCGATCCCAAC 59.332 45.455 0.00 0.00 0.00 3.77
562 1551 2.353605 GGCTCAAAATTTGCGATCCCAA 60.354 45.455 0.00 0.00 0.00 4.12
563 1552 1.204467 GGCTCAAAATTTGCGATCCCA 59.796 47.619 0.00 0.00 0.00 4.37
564 1553 1.798813 CGGCTCAAAATTTGCGATCCC 60.799 52.381 0.00 0.00 0.00 3.85
565 1554 1.548986 CGGCTCAAAATTTGCGATCC 58.451 50.000 0.00 0.00 0.00 3.36
566 1555 1.132262 TCCGGCTCAAAATTTGCGATC 59.868 47.619 0.00 0.00 0.00 3.69
574 1563 2.810400 CGTATCCCATCCGGCTCAAAAT 60.810 50.000 0.00 0.00 0.00 1.82
631 1620 1.539280 GCTCCATCTAACGAAGCCTCC 60.539 57.143 0.00 0.00 0.00 4.30
736 1725 7.934855 AGAATCCAATGTGCATAAGATATCC 57.065 36.000 0.00 0.00 0.00 2.59
893 2520 2.415512 GCGTACCTGCTTTGTTAGGAAG 59.584 50.000 0.00 0.00 37.52 3.46
920 2547 2.225727 GAGGGAACTTAAACACAAGGCG 59.774 50.000 0.00 0.00 44.43 5.52
938 2565 4.749245 AAGAAAATGTTGTGCGTAGAGG 57.251 40.909 0.00 0.00 0.00 3.69
1012 2639 0.039617 TGCGCCATTTTCGGACAAAG 60.040 50.000 4.18 0.00 0.00 2.77
1128 2755 7.693969 ACTGTTCAAGGATAAAATTCCTCTG 57.306 36.000 0.00 0.00 45.63 3.35
1310 2942 7.392113 AGTCACTGTAGGATGCATCTATAGTAC 59.608 40.741 25.28 20.52 37.16 2.73
1338 2970 4.614993 CGTTTGGTGCAAAAAGACCGATAT 60.615 41.667 0.00 0.00 35.03 1.63
1475 3107 9.650371 GCAAAGTTCTATGAAAAATCCAAAAAC 57.350 29.630 0.00 0.00 0.00 2.43
1703 4133 6.206634 ACGATATGAAAAGGAGTTTTGCTTCA 59.793 34.615 0.00 0.00 35.94 3.02
1866 4298 1.729284 TTCCGCGACAAGTAATTCCC 58.271 50.000 8.23 0.00 0.00 3.97
1935 4367 2.435805 CTCCTCCATCCGGAATTTCTCA 59.564 50.000 9.01 0.00 42.21 3.27
1939 4371 1.771255 CTCCTCCTCCATCCGGAATTT 59.229 52.381 9.01 0.00 42.21 1.82
2701 5746 5.422214 TCCTCTTAGAAAAAGAAGGCGAT 57.578 39.130 0.00 0.00 0.00 4.58
2768 5816 3.188254 TGAACAATAGCACACACATTCCG 59.812 43.478 0.00 0.00 0.00 4.30
2894 5944 8.990163 AATTACCAAGAAAGGACAGTCTAAAA 57.010 30.769 0.00 0.00 0.00 1.52
2960 6010 4.192317 CTCTTGGTTTAGAGGTGCCATAC 58.808 47.826 0.00 0.00 38.38 2.39
2987 6037 8.414003 GGAGGGATGTCAAAAATTTCTATAACC 58.586 37.037 0.00 0.00 0.00 2.85
2993 6043 5.015813 AGGGAGGGATGTCAAAAATTTCT 57.984 39.130 0.00 0.00 0.00 2.52
3085 6383 7.611213 AAAATCTTGGACCATAGTCTTTACG 57.389 36.000 0.00 0.00 43.05 3.18
3105 6403 7.389232 AGCTAGCAGCCATTTAAAAGAAAAAT 58.611 30.769 18.83 0.00 43.77 1.82
3155 6454 7.042791 CCAACATGTTCAGTTTATGTCCAAAAC 60.043 37.037 8.48 0.00 34.18 2.43
3160 6459 5.957842 TCCAACATGTTCAGTTTATGTCC 57.042 39.130 8.48 0.00 34.18 4.02
3161 6460 9.906660 TTTTATCCAACATGTTCAGTTTATGTC 57.093 29.630 8.48 0.00 34.18 3.06
3162 6461 9.691362 GTTTTATCCAACATGTTCAGTTTATGT 57.309 29.630 8.48 0.00 36.66 2.29
3163 6462 9.689976 TGTTTTATCCAACATGTTCAGTTTATG 57.310 29.630 8.48 0.00 31.48 1.90
3178 6479 5.269554 AGGAACTCCCATGTTTTATCCAA 57.730 39.130 6.79 0.00 37.41 3.53
3205 6506 5.660460 TCTAATTCATCACGCAAGCTCTAA 58.340 37.500 0.00 0.00 45.62 2.10
3317 6724 8.185506 TGTAGAGGAGAACAGTTGTATTACAA 57.814 34.615 5.14 5.14 35.42 2.41
3363 6780 3.587061 AGTACAACCACCAATCTCCATCA 59.413 43.478 0.00 0.00 0.00 3.07
3417 6834 4.541250 AAGATCCTTTGGCCAATATCCA 57.459 40.909 21.26 2.22 0.00 3.41
3603 7020 3.096495 GCAGGCCATGTAGGGGGA 61.096 66.667 5.01 0.00 38.09 4.81
3699 7117 2.975799 CGAACACAACCACCCGGG 60.976 66.667 22.25 22.25 44.81 5.73
3877 7295 7.507277 AGTGTGCAGAGATTAGTATCTATCCAA 59.493 37.037 0.00 0.00 41.23 3.53
3916 7341 7.347222 AGTTATGAACCTGTACCTTATGGATGA 59.653 37.037 0.81 0.00 37.04 2.92
3949 7375 3.511146 TCCAATCATTCAAAAGGTGAGCC 59.489 43.478 0.00 0.00 37.61 4.70
4002 7428 6.706270 TGAACTCGTTTGCTTCTCTAAAATCT 59.294 34.615 0.00 0.00 0.00 2.40
4008 7434 4.689071 TGTTGAACTCGTTTGCTTCTCTA 58.311 39.130 0.00 0.00 0.00 2.43
4019 7445 3.478857 TGTAACCCATGTTGAACTCGT 57.521 42.857 0.00 0.00 35.87 4.18
4031 7457 5.141182 TGCAAGGAGTTAAATTGTAACCCA 58.859 37.500 0.00 0.00 0.00 4.51
4067 7493 6.620089 GCTTTACGAGGTCATTGAGTTAAACC 60.620 42.308 0.00 0.00 0.00 3.27
4068 7494 6.147328 AGCTTTACGAGGTCATTGAGTTAAAC 59.853 38.462 0.00 0.00 0.00 2.01
4106 7532 1.144298 AGCTTTACGGGGTCCTTTTGT 59.856 47.619 0.00 0.00 0.00 2.83
4118 7544 5.637810 TCATGGACTTGAGTTAAGCTTTACG 59.362 40.000 3.20 0.00 40.16 3.18
4203 7629 8.471609 TCTATGAAATCCGTGTACAATAGTTGA 58.528 33.333 0.00 0.00 0.00 3.18
4204 7630 8.642908 TCTATGAAATCCGTGTACAATAGTTG 57.357 34.615 0.00 0.00 0.00 3.16
4217 7643 5.360591 AGTTTAGTGGCTCTATGAAATCCG 58.639 41.667 0.00 0.00 0.00 4.18
4223 7649 5.023452 TGGAGAAGTTTAGTGGCTCTATGA 58.977 41.667 0.00 0.00 0.00 2.15
4278 7704 3.689161 TGTCAGACCCTCGCAATAAAATG 59.311 43.478 0.00 0.00 0.00 2.32
4285 7711 3.410631 TTTATTGTCAGACCCTCGCAA 57.589 42.857 0.00 0.00 0.00 4.85
4286 7712 3.410631 TTTTATTGTCAGACCCTCGCA 57.589 42.857 0.00 0.00 0.00 5.10
4287 7713 5.116882 AGTATTTTATTGTCAGACCCTCGC 58.883 41.667 0.00 0.00 0.00 5.03
4288 7714 6.338146 TGAGTATTTTATTGTCAGACCCTCG 58.662 40.000 0.00 0.00 0.00 4.63
4289 7715 7.770897 ACATGAGTATTTTATTGTCAGACCCTC 59.229 37.037 0.00 0.00 0.00 4.30
4290 7716 7.633789 ACATGAGTATTTTATTGTCAGACCCT 58.366 34.615 0.00 0.00 0.00 4.34
4291 7717 7.865706 ACATGAGTATTTTATTGTCAGACCC 57.134 36.000 0.00 0.00 0.00 4.46
4292 7718 7.698130 GCAACATGAGTATTTTATTGTCAGACC 59.302 37.037 0.00 0.00 0.00 3.85
4293 7719 7.698130 GGCAACATGAGTATTTTATTGTCAGAC 59.302 37.037 0.00 0.00 0.00 3.51
4294 7720 7.413988 CGGCAACATGAGTATTTTATTGTCAGA 60.414 37.037 0.00 0.00 0.00 3.27
4295 7721 6.688385 CGGCAACATGAGTATTTTATTGTCAG 59.312 38.462 0.00 0.00 0.00 3.51
4296 7722 6.404184 CCGGCAACATGAGTATTTTATTGTCA 60.404 38.462 0.00 0.00 0.00 3.58
4297 7723 5.971202 CCGGCAACATGAGTATTTTATTGTC 59.029 40.000 0.00 0.00 0.00 3.18
4298 7724 5.650266 TCCGGCAACATGAGTATTTTATTGT 59.350 36.000 0.00 0.00 0.00 2.71
4299 7725 6.130298 TCCGGCAACATGAGTATTTTATTG 57.870 37.500 0.00 0.00 0.00 1.90
4300 7726 6.767524 TTCCGGCAACATGAGTATTTTATT 57.232 33.333 0.00 0.00 0.00 1.40
4301 7727 6.767524 TTTCCGGCAACATGAGTATTTTAT 57.232 33.333 0.00 0.00 0.00 1.40
4302 7728 6.576662 TTTTCCGGCAACATGAGTATTTTA 57.423 33.333 0.00 0.00 0.00 1.52
4303 7729 5.461032 TTTTCCGGCAACATGAGTATTTT 57.539 34.783 0.00 0.00 0.00 1.82
4304 7730 5.659440 ATTTTCCGGCAACATGAGTATTT 57.341 34.783 0.00 0.00 0.00 1.40
4305 7731 6.321181 ACATATTTTCCGGCAACATGAGTATT 59.679 34.615 12.59 0.00 0.00 1.89
4306 7732 5.827797 ACATATTTTCCGGCAACATGAGTAT 59.172 36.000 12.59 0.00 0.00 2.12
4307 7733 5.065859 CACATATTTTCCGGCAACATGAGTA 59.934 40.000 12.59 0.00 0.00 2.59
4308 7734 4.016444 ACATATTTTCCGGCAACATGAGT 58.984 39.130 12.59 0.00 0.00 3.41
4309 7735 4.142403 ACACATATTTTCCGGCAACATGAG 60.142 41.667 12.59 8.38 0.00 2.90
4310 7736 3.761218 ACACATATTTTCCGGCAACATGA 59.239 39.130 12.59 0.00 0.00 3.07
4311 7737 3.858812 CACACATATTTTCCGGCAACATG 59.141 43.478 0.00 1.01 0.00 3.21
4312 7738 3.119173 CCACACATATTTTCCGGCAACAT 60.119 43.478 0.00 0.00 0.00 2.71
4313 7739 2.230025 CCACACATATTTTCCGGCAACA 59.770 45.455 0.00 0.00 0.00 3.33
4314 7740 2.230266 ACCACACATATTTTCCGGCAAC 59.770 45.455 0.00 0.00 0.00 4.17
4315 7741 2.490115 GACCACACATATTTTCCGGCAA 59.510 45.455 0.00 0.00 0.00 4.52
4316 7742 2.088423 GACCACACATATTTTCCGGCA 58.912 47.619 0.00 0.00 0.00 5.69
4317 7743 1.404035 GGACCACACATATTTTCCGGC 59.596 52.381 0.00 0.00 0.00 6.13
4318 7744 2.717390 TGGACCACACATATTTTCCGG 58.283 47.619 0.00 0.00 0.00 5.14
4319 7745 6.633500 AATATGGACCACACATATTTTCCG 57.367 37.500 0.00 0.00 44.73 4.30
4342 7768 8.715191 AATTTTGTGCAGAGTGTCAATAAAAA 57.285 26.923 0.00 0.00 0.00 1.94
4343 7769 9.243637 GTAATTTTGTGCAGAGTGTCAATAAAA 57.756 29.630 0.00 0.00 0.00 1.52
4344 7770 8.409371 TGTAATTTTGTGCAGAGTGTCAATAAA 58.591 29.630 0.00 0.00 0.00 1.40
4345 7771 7.935520 TGTAATTTTGTGCAGAGTGTCAATAA 58.064 30.769 0.00 0.00 0.00 1.40
4346 7772 7.228507 ACTGTAATTTTGTGCAGAGTGTCAATA 59.771 33.333 0.00 0.00 33.57 1.90
4347 7773 6.039717 ACTGTAATTTTGTGCAGAGTGTCAAT 59.960 34.615 0.00 0.00 33.57 2.57
4348 7774 5.356751 ACTGTAATTTTGTGCAGAGTGTCAA 59.643 36.000 0.00 0.00 33.57 3.18
4349 7775 4.881273 ACTGTAATTTTGTGCAGAGTGTCA 59.119 37.500 0.00 0.00 33.57 3.58
4350 7776 5.424121 ACTGTAATTTTGTGCAGAGTGTC 57.576 39.130 0.00 0.00 33.57 3.67
4351 7777 7.510549 AATACTGTAATTTTGTGCAGAGTGT 57.489 32.000 0.00 0.00 33.57 3.55
4352 7778 8.075574 TCAAATACTGTAATTTTGTGCAGAGTG 58.924 33.333 11.55 0.00 33.24 3.51
4353 7779 8.165239 TCAAATACTGTAATTTTGTGCAGAGT 57.835 30.769 11.55 0.00 33.24 3.24
4354 7780 9.630098 ATTCAAATACTGTAATTTTGTGCAGAG 57.370 29.630 11.55 0.00 33.24 3.35
4371 7797 9.120538 AGAGAGAGTGAGAGAGTATTCAAATAC 57.879 37.037 4.99 4.99 41.19 1.89
4372 7798 9.337396 GAGAGAGAGTGAGAGAGTATTCAAATA 57.663 37.037 0.00 0.00 0.00 1.40
4373 7799 7.833682 TGAGAGAGAGTGAGAGAGTATTCAAAT 59.166 37.037 0.00 0.00 0.00 2.32
4374 7800 7.171653 TGAGAGAGAGTGAGAGAGTATTCAAA 58.828 38.462 0.00 0.00 0.00 2.69
4375 7801 6.716284 TGAGAGAGAGTGAGAGAGTATTCAA 58.284 40.000 0.00 0.00 0.00 2.69
4376 7802 6.306643 TGAGAGAGAGTGAGAGAGTATTCA 57.693 41.667 0.00 0.00 0.00 2.57
4377 7803 6.823689 AGTTGAGAGAGAGTGAGAGAGTATTC 59.176 42.308 0.00 0.00 0.00 1.75
4378 7804 6.721318 AGTTGAGAGAGAGTGAGAGAGTATT 58.279 40.000 0.00 0.00 0.00 1.89
4379 7805 6.313519 AGTTGAGAGAGAGTGAGAGAGTAT 57.686 41.667 0.00 0.00 0.00 2.12
4380 7806 5.755409 AGTTGAGAGAGAGTGAGAGAGTA 57.245 43.478 0.00 0.00 0.00 2.59
4381 7807 4.640771 AGTTGAGAGAGAGTGAGAGAGT 57.359 45.455 0.00 0.00 0.00 3.24
4382 7808 5.248640 AGAAGTTGAGAGAGAGTGAGAGAG 58.751 45.833 0.00 0.00 0.00 3.20
4383 7809 5.241403 AGAAGTTGAGAGAGAGTGAGAGA 57.759 43.478 0.00 0.00 0.00 3.10
4384 7810 6.128007 GGTTAGAAGTTGAGAGAGAGTGAGAG 60.128 46.154 0.00 0.00 0.00 3.20
4385 7811 5.708230 GGTTAGAAGTTGAGAGAGAGTGAGA 59.292 44.000 0.00 0.00 0.00 3.27
4386 7812 5.710099 AGGTTAGAAGTTGAGAGAGAGTGAG 59.290 44.000 0.00 0.00 0.00 3.51
4387 7813 5.636123 AGGTTAGAAGTTGAGAGAGAGTGA 58.364 41.667 0.00 0.00 0.00 3.41
4388 7814 5.975693 AGGTTAGAAGTTGAGAGAGAGTG 57.024 43.478 0.00 0.00 0.00 3.51
4389 7815 5.947566 GGTAGGTTAGAAGTTGAGAGAGAGT 59.052 44.000 0.00 0.00 0.00 3.24
4390 7816 5.065474 CGGTAGGTTAGAAGTTGAGAGAGAG 59.935 48.000 0.00 0.00 0.00 3.20
4391 7817 4.942483 CGGTAGGTTAGAAGTTGAGAGAGA 59.058 45.833 0.00 0.00 0.00 3.10
4392 7818 4.942483 TCGGTAGGTTAGAAGTTGAGAGAG 59.058 45.833 0.00 0.00 0.00 3.20
4393 7819 4.699257 GTCGGTAGGTTAGAAGTTGAGAGA 59.301 45.833 0.00 0.00 0.00 3.10
4394 7820 4.458295 TGTCGGTAGGTTAGAAGTTGAGAG 59.542 45.833 0.00 0.00 0.00 3.20
4395 7821 4.401022 TGTCGGTAGGTTAGAAGTTGAGA 58.599 43.478 0.00 0.00 0.00 3.27
4396 7822 4.778534 TGTCGGTAGGTTAGAAGTTGAG 57.221 45.455 0.00 0.00 0.00 3.02
4397 7823 5.733620 ATTGTCGGTAGGTTAGAAGTTGA 57.266 39.130 0.00 0.00 0.00 3.18
4398 7824 5.929992 TGAATTGTCGGTAGGTTAGAAGTTG 59.070 40.000 0.00 0.00 0.00 3.16
4399 7825 6.105397 TGAATTGTCGGTAGGTTAGAAGTT 57.895 37.500 0.00 0.00 0.00 2.66
4400 7826 5.733620 TGAATTGTCGGTAGGTTAGAAGT 57.266 39.130 0.00 0.00 0.00 3.01
4401 7827 7.429636 TTTTGAATTGTCGGTAGGTTAGAAG 57.570 36.000 0.00 0.00 0.00 2.85
4402 7828 7.804843 TTTTTGAATTGTCGGTAGGTTAGAA 57.195 32.000 0.00 0.00 0.00 2.10
4479 7905 9.589111 TGTGTATTCGCTTGATACTACATTTTA 57.411 29.630 0.00 0.00 0.00 1.52
4480 7906 8.487313 TGTGTATTCGCTTGATACTACATTTT 57.513 30.769 0.00 0.00 0.00 1.82
4481 7907 8.662781 ATGTGTATTCGCTTGATACTACATTT 57.337 30.769 0.00 0.00 0.00 2.32
4482 7908 7.926018 TGATGTGTATTCGCTTGATACTACATT 59.074 33.333 0.00 0.00 30.49 2.71
4483 7909 7.382488 GTGATGTGTATTCGCTTGATACTACAT 59.618 37.037 0.00 0.00 31.67 2.29
4484 7910 6.695713 GTGATGTGTATTCGCTTGATACTACA 59.304 38.462 0.00 0.00 0.00 2.74
4485 7911 6.129431 CGTGATGTGTATTCGCTTGATACTAC 60.129 42.308 0.00 0.00 0.00 2.73
4486 7912 5.912955 CGTGATGTGTATTCGCTTGATACTA 59.087 40.000 0.00 0.00 0.00 1.82
4487 7913 4.740205 CGTGATGTGTATTCGCTTGATACT 59.260 41.667 0.00 0.00 0.00 2.12
4488 7914 4.738252 TCGTGATGTGTATTCGCTTGATAC 59.262 41.667 0.00 0.00 0.00 2.24
4489 7915 4.927422 TCGTGATGTGTATTCGCTTGATA 58.073 39.130 0.00 0.00 0.00 2.15
4490 7916 3.780902 TCGTGATGTGTATTCGCTTGAT 58.219 40.909 0.00 0.00 0.00 2.57
4491 7917 3.224884 TCGTGATGTGTATTCGCTTGA 57.775 42.857 0.00 0.00 0.00 3.02
4492 7918 3.551485 TCATCGTGATGTGTATTCGCTTG 59.449 43.478 9.51 0.00 39.72 4.01
4493 7919 3.780902 TCATCGTGATGTGTATTCGCTT 58.219 40.909 9.51 0.00 39.72 4.68
4494 7920 3.375642 CTCATCGTGATGTGTATTCGCT 58.624 45.455 9.51 0.00 39.72 4.93
4495 7921 2.097202 GCTCATCGTGATGTGTATTCGC 60.097 50.000 9.51 0.49 39.72 4.70
4496 7922 3.115554 TGCTCATCGTGATGTGTATTCG 58.884 45.455 9.51 0.00 39.72 3.34
4497 7923 4.329801 TGTTGCTCATCGTGATGTGTATTC 59.670 41.667 9.51 4.89 39.72 1.75
4498 7924 4.252878 TGTTGCTCATCGTGATGTGTATT 58.747 39.130 9.51 0.00 39.72 1.89
4499 7925 3.860641 TGTTGCTCATCGTGATGTGTAT 58.139 40.909 9.51 0.00 39.72 2.29
4500 7926 3.311486 TGTTGCTCATCGTGATGTGTA 57.689 42.857 9.51 4.42 39.72 2.90
4501 7927 2.168326 TGTTGCTCATCGTGATGTGT 57.832 45.000 9.51 0.00 39.72 3.72
4502 7928 3.314763 GATGTTGCTCATCGTGATGTG 57.685 47.619 9.51 8.39 42.57 3.21
4511 7937 1.750399 GTGGCCGGATGTTGCTCAT 60.750 57.895 5.05 0.00 39.77 2.90
4512 7938 1.549243 TAGTGGCCGGATGTTGCTCA 61.549 55.000 5.05 0.00 0.00 4.26
4513 7939 1.090052 GTAGTGGCCGGATGTTGCTC 61.090 60.000 5.05 0.00 0.00 4.26
4514 7940 1.078426 GTAGTGGCCGGATGTTGCT 60.078 57.895 5.05 0.00 0.00 3.91
4515 7941 0.748005 ATGTAGTGGCCGGATGTTGC 60.748 55.000 5.05 0.00 0.00 4.17
4516 7942 2.613026 TATGTAGTGGCCGGATGTTG 57.387 50.000 5.05 0.00 0.00 3.33
4517 7943 3.857157 ATTATGTAGTGGCCGGATGTT 57.143 42.857 5.05 0.00 0.00 2.71
4518 7944 3.857157 AATTATGTAGTGGCCGGATGT 57.143 42.857 5.05 0.00 0.00 3.06
4519 7945 4.020573 TCCTAATTATGTAGTGGCCGGATG 60.021 45.833 5.05 0.00 0.00 3.51
4520 7946 4.164981 TCCTAATTATGTAGTGGCCGGAT 58.835 43.478 5.05 0.00 0.00 4.18
4521 7947 3.578978 TCCTAATTATGTAGTGGCCGGA 58.421 45.455 5.05 0.00 0.00 5.14
4522 7948 4.253685 CATCCTAATTATGTAGTGGCCGG 58.746 47.826 0.00 0.00 0.00 6.13
4523 7949 3.684788 GCATCCTAATTATGTAGTGGCCG 59.315 47.826 0.00 0.00 0.00 6.13
4524 7950 4.455877 GTGCATCCTAATTATGTAGTGGCC 59.544 45.833 0.00 0.00 0.00 5.36
4525 7951 5.049405 GTGTGCATCCTAATTATGTAGTGGC 60.049 44.000 0.00 0.00 0.00 5.01
4526 7952 6.054941 TGTGTGCATCCTAATTATGTAGTGG 58.945 40.000 0.00 0.00 0.00 4.00
4527 7953 6.763135 ACTGTGTGCATCCTAATTATGTAGTG 59.237 38.462 0.00 0.00 0.00 2.74
4528 7954 6.889198 ACTGTGTGCATCCTAATTATGTAGT 58.111 36.000 0.00 0.00 0.00 2.73
4529 7955 6.986231 TGACTGTGTGCATCCTAATTATGTAG 59.014 38.462 0.00 0.00 0.00 2.74
4530 7956 6.883744 TGACTGTGTGCATCCTAATTATGTA 58.116 36.000 0.00 0.00 0.00 2.29
4531 7957 5.744171 TGACTGTGTGCATCCTAATTATGT 58.256 37.500 0.00 0.00 0.00 2.29
4532 7958 6.682423 TTGACTGTGTGCATCCTAATTATG 57.318 37.500 0.00 0.00 0.00 1.90
4533 7959 6.658816 TGTTTGACTGTGTGCATCCTAATTAT 59.341 34.615 0.00 0.00 0.00 1.28
4534 7960 6.000840 TGTTTGACTGTGTGCATCCTAATTA 58.999 36.000 0.00 0.00 0.00 1.40
4535 7961 4.826733 TGTTTGACTGTGTGCATCCTAATT 59.173 37.500 0.00 0.00 0.00 1.40
4536 7962 4.216257 GTGTTTGACTGTGTGCATCCTAAT 59.784 41.667 0.00 0.00 0.00 1.73
4537 7963 3.563808 GTGTTTGACTGTGTGCATCCTAA 59.436 43.478 0.00 0.00 0.00 2.69
4538 7964 3.138304 GTGTTTGACTGTGTGCATCCTA 58.862 45.455 0.00 0.00 0.00 2.94
4539 7965 1.949525 GTGTTTGACTGTGTGCATCCT 59.050 47.619 0.00 0.00 0.00 3.24
4540 7966 1.001378 GGTGTTTGACTGTGTGCATCC 60.001 52.381 0.00 0.00 0.00 3.51
4541 7967 1.675483 TGGTGTTTGACTGTGTGCATC 59.325 47.619 0.00 0.00 0.00 3.91
4542 7968 1.761449 TGGTGTTTGACTGTGTGCAT 58.239 45.000 0.00 0.00 0.00 3.96
4543 7969 1.539157 TTGGTGTTTGACTGTGTGCA 58.461 45.000 0.00 0.00 0.00 4.57
4544 7970 2.645730 TTTGGTGTTTGACTGTGTGC 57.354 45.000 0.00 0.00 0.00 4.57
4545 7971 4.082787 AGACTTTTGGTGTTTGACTGTGTG 60.083 41.667 0.00 0.00 0.00 3.82
4546 7972 4.079253 AGACTTTTGGTGTTTGACTGTGT 58.921 39.130 0.00 0.00 0.00 3.72
4547 7973 4.155826 TCAGACTTTTGGTGTTTGACTGTG 59.844 41.667 0.00 0.00 0.00 3.66
4548 7974 4.331968 TCAGACTTTTGGTGTTTGACTGT 58.668 39.130 0.00 0.00 0.00 3.55
4549 7975 4.963276 TCAGACTTTTGGTGTTTGACTG 57.037 40.909 0.00 0.00 0.00 3.51
4550 7976 7.639113 TTTATCAGACTTTTGGTGTTTGACT 57.361 32.000 0.00 0.00 32.64 3.41
4551 7977 8.696410 TTTTTATCAGACTTTTGGTGTTTGAC 57.304 30.769 0.00 0.00 32.64 3.18
4582 8008 0.320697 CGGACGGAGGGAGTCTTTTT 59.679 55.000 0.00 0.00 38.58 1.94
4583 8009 1.542187 CCGGACGGAGGGAGTCTTTT 61.542 60.000 4.40 0.00 38.58 2.27
4584 8010 1.982938 CCGGACGGAGGGAGTCTTT 60.983 63.158 4.40 0.00 38.58 2.52
4585 8011 2.362632 CCGGACGGAGGGAGTCTT 60.363 66.667 4.40 0.00 38.58 3.01
4586 8012 2.436596 TTTCCGGACGGAGGGAGTCT 62.437 60.000 13.64 0.00 46.06 3.24
4587 8013 1.328430 ATTTCCGGACGGAGGGAGTC 61.328 60.000 13.64 0.00 46.06 3.36
4588 8014 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4589 8015 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4590 8016 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4591 8017 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4592 8018 3.319972 TGATAAGTATTTCCGGACGGAGG 59.680 47.826 13.64 0.00 46.06 4.30
4593 8019 4.579454 TGATAAGTATTTCCGGACGGAG 57.421 45.455 13.64 0.00 46.06 4.63
4594 8020 4.585581 TGATGATAAGTATTTCCGGACGGA 59.414 41.667 1.83 9.76 43.52 4.69
4595 8021 4.878439 TGATGATAAGTATTTCCGGACGG 58.122 43.478 1.83 3.96 0.00 4.79
4596 8022 8.595533 CATTATGATGATAAGTATTTCCGGACG 58.404 37.037 1.83 0.00 35.16 4.79
4597 8023 8.883731 CCATTATGATGATAAGTATTTCCGGAC 58.116 37.037 1.83 0.00 35.16 4.79
4598 8024 8.821817 TCCATTATGATGATAAGTATTTCCGGA 58.178 33.333 0.00 0.00 35.16 5.14
4599 8025 9.618890 ATCCATTATGATGATAAGTATTTCCGG 57.381 33.333 0.00 0.00 35.16 5.14
4606 8032 9.884636 CCCGTTTATCCATTATGATGATAAGTA 57.115 33.333 0.00 0.00 35.16 2.24
4607 8033 7.829211 CCCCGTTTATCCATTATGATGATAAGT 59.171 37.037 0.00 0.00 35.16 2.24
4608 8034 8.046708 TCCCCGTTTATCCATTATGATGATAAG 58.953 37.037 0.00 0.00 35.16 1.73
4609 8035 7.923461 TCCCCGTTTATCCATTATGATGATAA 58.077 34.615 0.00 0.00 35.16 1.75
4610 8036 7.503492 TCCCCGTTTATCCATTATGATGATA 57.497 36.000 0.00 0.00 35.16 2.15
4611 8037 6.387192 TCCCCGTTTATCCATTATGATGAT 57.613 37.500 0.00 0.00 35.16 2.45
4612 8038 5.834281 TCCCCGTTTATCCATTATGATGA 57.166 39.130 0.00 0.00 35.16 2.92
4613 8039 5.945784 ACATCCCCGTTTATCCATTATGATG 59.054 40.000 0.00 0.00 33.80 3.07
4614 8040 6.139679 ACATCCCCGTTTATCCATTATGAT 57.860 37.500 0.00 0.00 0.00 2.45
4615 8041 5.576563 ACATCCCCGTTTATCCATTATGA 57.423 39.130 0.00 0.00 0.00 2.15
4616 8042 7.338710 AGATACATCCCCGTTTATCCATTATG 58.661 38.462 0.00 0.00 0.00 1.90
4617 8043 7.510675 AGATACATCCCCGTTTATCCATTAT 57.489 36.000 0.00 0.00 0.00 1.28
4618 8044 6.945636 AGATACATCCCCGTTTATCCATTA 57.054 37.500 0.00 0.00 0.00 1.90
4619 8045 5.843019 AGATACATCCCCGTTTATCCATT 57.157 39.130 0.00 0.00 0.00 3.16
4620 8046 6.154706 GTCTAGATACATCCCCGTTTATCCAT 59.845 42.308 0.00 0.00 0.00 3.41
4621 8047 5.479375 GTCTAGATACATCCCCGTTTATCCA 59.521 44.000 0.00 0.00 0.00 3.41
4622 8048 5.715753 AGTCTAGATACATCCCCGTTTATCC 59.284 44.000 0.00 0.00 0.00 2.59
4623 8049 6.837471 AGTCTAGATACATCCCCGTTTATC 57.163 41.667 0.00 0.00 0.00 1.75
4624 8050 8.896722 ATAAGTCTAGATACATCCCCGTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
4625 8051 8.716674 AATAAGTCTAGATACATCCCCGTTTA 57.283 34.615 0.00 0.00 0.00 2.01
4626 8052 7.613551 AATAAGTCTAGATACATCCCCGTTT 57.386 36.000 0.00 0.00 0.00 3.60
4627 8053 7.613551 AAATAAGTCTAGATACATCCCCGTT 57.386 36.000 0.00 0.00 0.00 4.44
4628 8054 7.613551 AAAATAAGTCTAGATACATCCCCGT 57.386 36.000 0.00 0.00 0.00 5.28
4629 8055 8.804204 ACTAAAATAAGTCTAGATACATCCCCG 58.196 37.037 0.00 0.00 0.00 5.73
4667 8093 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
4675 8101 9.865321 CTGAAAATACTTGTCATCAAAATGGAT 57.135 29.630 0.00 0.00 33.42 3.41
4676 8102 9.076781 TCTGAAAATACTTGTCATCAAAATGGA 57.923 29.630 0.00 0.00 33.42 3.41
4677 8103 9.132521 GTCTGAAAATACTTGTCATCAAAATGG 57.867 33.333 0.00 0.00 33.42 3.16
4678 8104 8.843733 CGTCTGAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
4679 8105 8.023128 CCGTCTGAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
4680 8106 7.227711 TCCGTCTGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
4681 8107 6.708502 TCCGTCTGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
4682 8108 6.227522 TCCGTCTGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
4683 8109 5.789521 TCCGTCTGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
4684 8110 5.292101 CCTCCGTCTGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
4685 8111 5.178797 CCTCCGTCTGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
4686 8112 4.562757 CCCTCCGTCTGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
4687 8113 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4688 8114 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4689 8115 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4690 8116 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
4691 8117 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
4692 8118 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
4693 8119 4.346730 TGTACTCCCTCCGTCTGAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
4694 8120 3.170717 TGTACTCCCTCCGTCTGAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
4695 8121 2.600790 TGTACTCCCTCCGTCTGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
4696 8122 2.297698 TGTACTCCCTCCGTCTGAAA 57.702 50.000 0.00 0.00 0.00 2.69
4697 8123 1.891150 GTTGTACTCCCTCCGTCTGAA 59.109 52.381 0.00 0.00 0.00 3.02
4698 8124 1.202964 TGTTGTACTCCCTCCGTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
4699 8125 1.254026 TGTTGTACTCCCTCCGTCTG 58.746 55.000 0.00 0.00 0.00 3.51
4700 8126 2.233305 ATGTTGTACTCCCTCCGTCT 57.767 50.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.