Multiple sequence alignment - TraesCS4B01G098300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G098300 chr4B 100.000 5676 0 0 1 5676 103523414 103529089 0.000000e+00 10482
1 TraesCS4B01G098300 chr4D 95.167 2731 86 10 2377 5069 69848274 69850996 0.000000e+00 4270
2 TraesCS4B01G098300 chr4D 87.598 1524 90 42 331 1826 69846352 69847804 0.000000e+00 1676
3 TraesCS4B01G098300 chr4D 88.518 479 30 11 1882 2339 69847808 69848282 1.790000e-154 556
4 TraesCS4B01G098300 chr4D 90.991 333 19 2 5136 5467 69876067 69876389 6.750000e-119 438
5 TraesCS4B01G098300 chr4D 90.090 333 21 3 5136 5467 69873273 69873594 6.800000e-114 422
6 TraesCS4B01G098300 chr4D 91.011 267 14 1 5201 5467 69853702 69853958 9.050000e-93 351
7 TraesCS4B01G098300 chr4D 95.000 220 7 1 5461 5676 69931619 69931838 5.450000e-90 342
8 TraesCS4B01G098300 chr4D 91.870 246 10 5 5222 5467 69851094 69851329 9.110000e-88 335
9 TraesCS4B01G098300 chr4D 85.246 183 17 3 93 266 69846043 69846224 4.520000e-41 180
10 TraesCS4B01G098300 chr4D 96.040 101 3 1 247 347 69846233 69846332 4.550000e-36 163
11 TraesCS4B01G098300 chr4A 93.565 2595 102 20 2507 5069 522155379 522157940 0.000000e+00 3807
12 TraesCS4B01G098300 chr4A 85.264 1364 111 40 93 1401 522153018 522154346 0.000000e+00 1323
13 TraesCS4B01G098300 chr4A 88.566 516 40 8 1844 2344 522154714 522155225 4.860000e-170 608
14 TraesCS4B01G098300 chr4A 93.258 356 22 2 1442 1796 522154360 522154714 1.810000e-144 523
15 TraesCS4B01G098300 chr4A 100.000 130 0 0 2382 2511 522155217 522155346 2.040000e-59 241
16 TraesCS4B01G098300 chr4A 94.776 134 7 0 5543 5676 522157978 522158111 5.760000e-50 209
17 TraesCS4B01G098300 chr1D 90.511 411 35 3 5139 5545 451791568 451791978 1.800000e-149 540
18 TraesCS4B01G098300 chr1B 89.880 415 37 4 5136 5545 621410737 621411151 3.890000e-146 529


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G098300 chr4B 103523414 103529089 5675 False 10482.000000 10482 100.000000 1 5676 1 chr4B.!!$F1 5675
1 TraesCS4B01G098300 chr4D 69846043 69853958 7915 False 1075.857143 4270 90.778571 93 5467 7 chr4D.!!$F2 5374
2 TraesCS4B01G098300 chr4D 69873273 69876389 3116 False 430.000000 438 90.540500 5136 5467 2 chr4D.!!$F3 331
3 TraesCS4B01G098300 chr4A 522153018 522158111 5093 False 1118.500000 3807 92.571500 93 5676 6 chr4A.!!$F1 5583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.098728 GGCATGTATTCCACACACGC 59.901 55.000 0.00 0.0 40.86 5.34 F
1434 1573 0.102300 GCCGCAATACAATTGGTCCC 59.898 55.000 10.83 0.0 0.00 4.46 F
1704 1845 0.179097 GAAAGGGTTGCGTGCCAAAA 60.179 50.000 0.00 0.0 34.68 2.44 F
1829 1971 0.393808 ATCCCGCCTGCGTAAACATT 60.394 50.000 10.94 0.0 37.81 2.71 F
2202 2378 0.532115 GGGCCTGTATGTTTGCCTTG 59.468 55.000 0.84 0.0 43.50 3.61 F
2321 2498 1.632920 TGCTGATATGGGGTGTGTGAA 59.367 47.619 0.00 0.0 0.00 3.18 F
4061 4282 1.364328 ACAGGGGAAATATTTGGCCCA 59.636 47.619 20.94 0.0 42.52 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 1579 0.033090 ACGGGAAAGTCCAGACGAAC 59.967 55.000 1.22 0.00 38.64 3.95 R
2594 2808 0.664761 CATGCCATAAACCTCCAGCG 59.335 55.000 0.00 0.00 0.00 5.18 R
2781 2998 0.759346 AAGACTGTCGAAACCTGCCT 59.241 50.000 1.52 0.00 0.00 4.75 R
3274 3493 2.354510 GTGCACTGTTAGAAACACAGCA 59.645 45.455 10.32 9.19 44.85 4.41 R
3829 4048 1.021202 TGGTGGCAACTTCTTTGTCG 58.979 50.000 3.27 0.00 43.37 4.35 R
4256 4485 1.153549 GGTGAAGAGGTAGGCTGCG 60.154 63.158 0.00 0.00 0.00 5.18 R
5477 8485 0.036388 TGCGGAAGACCATTCTCACC 60.036 55.000 0.00 0.00 35.59 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.713824 TGAACTTGGGTAGATCGTAGTG 57.286 45.455 0.00 0.00 0.00 2.74
23 24 3.119245 TGAACTTGGGTAGATCGTAGTGC 60.119 47.826 0.00 0.00 0.00 4.40
24 25 1.404391 ACTTGGGTAGATCGTAGTGCG 59.596 52.381 0.00 0.00 43.01 5.34
25 26 1.404391 CTTGGGTAGATCGTAGTGCGT 59.596 52.381 0.00 0.00 42.13 5.24
27 28 1.820519 TGGGTAGATCGTAGTGCGTTT 59.179 47.619 0.00 0.00 42.13 3.60
30 31 4.082300 TGGGTAGATCGTAGTGCGTTTTTA 60.082 41.667 0.00 0.00 42.13 1.52
31 32 4.266265 GGGTAGATCGTAGTGCGTTTTTAC 59.734 45.833 0.00 0.42 42.13 2.01
32 33 5.098211 GGTAGATCGTAGTGCGTTTTTACT 58.902 41.667 0.00 0.00 42.13 2.24
33 34 5.228843 GGTAGATCGTAGTGCGTTTTTACTC 59.771 44.000 0.00 0.00 42.13 2.59
34 35 5.056894 AGATCGTAGTGCGTTTTTACTCT 57.943 39.130 0.00 0.00 42.13 3.24
36 37 5.924825 AGATCGTAGTGCGTTTTTACTCTTT 59.075 36.000 0.00 0.00 42.13 2.52
37 38 5.565723 TCGTAGTGCGTTTTTACTCTTTC 57.434 39.130 0.00 0.00 42.13 2.62
38 39 4.445385 TCGTAGTGCGTTTTTACTCTTTCC 59.555 41.667 0.00 0.00 42.13 3.13
40 41 2.882761 AGTGCGTTTTTACTCTTTCCCC 59.117 45.455 0.00 0.00 0.00 4.81
41 42 2.882761 GTGCGTTTTTACTCTTTCCCCT 59.117 45.455 0.00 0.00 0.00 4.79
42 43 3.058432 GTGCGTTTTTACTCTTTCCCCTC 60.058 47.826 0.00 0.00 0.00 4.30
43 44 3.181448 TGCGTTTTTACTCTTTCCCCTCT 60.181 43.478 0.00 0.00 0.00 3.69
44 45 4.040706 TGCGTTTTTACTCTTTCCCCTCTA 59.959 41.667 0.00 0.00 0.00 2.43
46 47 5.646793 GCGTTTTTACTCTTTCCCCTCTAAT 59.353 40.000 0.00 0.00 0.00 1.73
48 49 7.201591 GCGTTTTTACTCTTTCCCCTCTAATAC 60.202 40.741 0.00 0.00 0.00 1.89
49 50 8.039538 CGTTTTTACTCTTTCCCCTCTAATACT 58.960 37.037 0.00 0.00 0.00 2.12
56 57 9.369672 ACTCTTTCCCCTCTAATACTAATACAG 57.630 37.037 0.00 0.00 0.00 2.74
57 58 9.369672 CTCTTTCCCCTCTAATACTAATACAGT 57.630 37.037 0.00 0.00 41.62 3.55
58 59 9.364653 TCTTTCCCCTCTAATACTAATACAGTC 57.635 37.037 0.00 0.00 38.80 3.51
60 61 8.707796 TTCCCCTCTAATACTAATACAGTCTG 57.292 38.462 0.00 0.00 38.80 3.51
61 62 7.239438 TCCCCTCTAATACTAATACAGTCTGG 58.761 42.308 4.53 0.00 38.80 3.86
63 64 6.493802 CCCTCTAATACTAATACAGTCTGGCA 59.506 42.308 4.53 0.00 38.80 4.92
64 65 7.179338 CCCTCTAATACTAATACAGTCTGGCAT 59.821 40.741 4.53 0.00 38.80 4.40
65 66 8.031864 CCTCTAATACTAATACAGTCTGGCATG 58.968 40.741 4.53 0.00 38.80 4.06
66 67 8.478775 TCTAATACTAATACAGTCTGGCATGT 57.521 34.615 4.53 0.00 38.80 3.21
67 68 9.582648 TCTAATACTAATACAGTCTGGCATGTA 57.417 33.333 4.53 2.21 38.80 2.29
70 71 9.712305 AATACTAATACAGTCTGGCATGTATTC 57.288 33.333 21.82 0.00 45.11 1.75
71 72 6.525629 ACTAATACAGTCTGGCATGTATTCC 58.474 40.000 21.82 0.00 45.11 3.01
72 73 5.372343 AATACAGTCTGGCATGTATTCCA 57.628 39.130 15.70 0.00 45.11 3.53
73 74 2.991250 ACAGTCTGGCATGTATTCCAC 58.009 47.619 4.53 0.00 0.00 4.02
75 76 2.679837 CAGTCTGGCATGTATTCCACAC 59.320 50.000 0.00 0.00 40.86 3.82
76 77 2.305635 AGTCTGGCATGTATTCCACACA 59.694 45.455 0.00 0.00 40.86 3.72
77 78 2.420022 GTCTGGCATGTATTCCACACAC 59.580 50.000 0.00 0.00 40.86 3.82
78 79 1.398041 CTGGCATGTATTCCACACACG 59.602 52.381 0.00 0.00 40.86 4.49
79 80 0.098728 GGCATGTATTCCACACACGC 59.901 55.000 0.00 0.00 40.86 5.34
80 81 0.801872 GCATGTATTCCACACACGCA 59.198 50.000 0.00 0.00 40.86 5.24
81 82 1.465689 GCATGTATTCCACACACGCAC 60.466 52.381 0.00 0.00 40.86 5.34
82 83 1.075542 ATGTATTCCACACACGCACG 58.924 50.000 0.00 0.00 40.86 5.34
87 88 1.697772 TTCCACACACGCACGACAAC 61.698 55.000 0.00 0.00 0.00 3.32
88 89 2.456948 CCACACACGCACGACAACA 61.457 57.895 0.00 0.00 0.00 3.33
89 90 1.296577 CACACACGCACGACAACAC 60.297 57.895 0.00 0.00 0.00 3.32
90 91 2.323105 CACACGCACGACAACACC 59.677 61.111 0.00 0.00 0.00 4.16
91 92 2.171079 CACACGCACGACAACACCT 61.171 57.895 0.00 0.00 0.00 4.00
111 112 8.706322 ACACCTTCCATCTTAAATTACTTGTT 57.294 30.769 0.00 0.00 0.00 2.83
114 115 9.981114 ACCTTCCATCTTAAATTACTTGTTTTG 57.019 29.630 0.00 0.00 0.00 2.44
130 131 8.877864 ACTTGTTTTGGATTTATCTGGATGTA 57.122 30.769 0.00 0.00 0.00 2.29
225 235 2.401766 CGTCAACTCATGGCCTGGC 61.402 63.158 11.05 11.05 0.00 4.85
242 252 4.457257 GCCTGGCTGTATCTTGAATTATCC 59.543 45.833 12.43 0.00 0.00 2.59
261 271 2.303600 TCCCGTAAACAATGGCTACTGT 59.696 45.455 0.00 0.00 32.21 3.55
306 347 4.518249 AGCAAGATGGCTTAACTTAGTCC 58.482 43.478 0.00 0.00 42.71 3.85
350 427 9.370126 CCGATCGAGTAATTAATTGTTTTCATC 57.630 33.333 18.66 4.84 0.00 2.92
430 508 5.576447 GGAAACCAACTGAACTCAAAAGA 57.424 39.130 0.00 0.00 0.00 2.52
432 510 6.394809 GGAAACCAACTGAACTCAAAAGAAA 58.605 36.000 0.00 0.00 0.00 2.52
433 511 6.871492 GGAAACCAACTGAACTCAAAAGAAAA 59.129 34.615 0.00 0.00 0.00 2.29
434 512 7.386573 GGAAACCAACTGAACTCAAAAGAAAAA 59.613 33.333 0.00 0.00 0.00 1.94
435 513 7.889589 AACCAACTGAACTCAAAAGAAAAAG 57.110 32.000 0.00 0.00 0.00 2.27
510 600 1.733526 GACTTGTGTTGGGTGCACC 59.266 57.895 28.57 28.57 36.11 5.01
518 608 1.423541 TGTTGGGTGCACCTAGTCAAT 59.576 47.619 33.91 0.00 41.11 2.57
527 617 5.183904 GGTGCACCTAGTCAATGAAAGAAAT 59.816 40.000 29.12 0.00 0.00 2.17
556 668 0.884704 AAAACTCGCACCATGTCGCT 60.885 50.000 2.53 0.00 0.00 4.93
638 750 8.112016 TCCAACGAACAGATTAGATATCTAGG 57.888 38.462 12.16 6.30 0.00 3.02
658 770 8.625467 TCTAGGCATAGTAGTATAGATGGAGA 57.375 38.462 5.15 0.00 0.00 3.71
854 984 0.470833 CCGTCTCCATCTCCATCCCT 60.471 60.000 0.00 0.00 0.00 4.20
855 985 0.678395 CGTCTCCATCTCCATCCCTG 59.322 60.000 0.00 0.00 0.00 4.45
856 986 1.055040 GTCTCCATCTCCATCCCTGG 58.945 60.000 0.00 0.00 44.64 4.45
857 987 0.104777 TCTCCATCTCCATCCCTGGG 60.105 60.000 6.33 6.33 43.34 4.45
858 988 0.401105 CTCCATCTCCATCCCTGGGT 60.401 60.000 13.56 0.00 43.34 4.51
949 1079 2.680974 TATCTCCATTGCCGCCTGCC 62.681 60.000 0.00 0.00 40.16 4.85
995 1127 4.821589 CGAGGAGGAGCGGGTTGC 62.822 72.222 0.00 0.00 46.98 4.17
1050 1182 3.019003 GCTGCGGGGTAGCTTCAGA 62.019 63.158 0.00 0.00 38.22 3.27
1138 1270 0.532573 GAAGGAGGACGACATCAGCA 59.467 55.000 1.56 0.00 0.00 4.41
1224 1356 1.345741 TCCATCTCCATGCCGAATCTC 59.654 52.381 0.00 0.00 0.00 2.75
1249 1385 2.501723 GTTGACTCCAGCAGGATAGGAA 59.498 50.000 0.00 0.00 44.70 3.36
1273 1409 3.502123 TCTTGGGTTGGTAAGAACTGG 57.498 47.619 0.00 0.00 30.49 4.00
1292 1429 0.729690 GAACGGAATTCCAGCTCTGC 59.270 55.000 24.09 2.45 35.14 4.26
1293 1430 0.678048 AACGGAATTCCAGCTCTGCC 60.678 55.000 24.09 0.00 35.14 4.85
1312 1449 2.848691 CCTGCATGATTCTCTCTTCCC 58.151 52.381 0.00 0.00 0.00 3.97
1346 1484 1.005347 CGTGATTGCGTCCGGTTTATC 60.005 52.381 0.00 0.00 0.00 1.75
1361 1499 5.470098 CCGGTTTATCAATCCATGGAAGTAG 59.530 44.000 20.67 9.06 0.00 2.57
1401 1540 4.221422 GCCGGCGCTGGATCAGTA 62.221 66.667 39.24 0.00 33.43 2.74
1402 1541 2.499205 CCGGCGCTGGATCAGTAA 59.501 61.111 32.31 0.00 33.43 2.24
1403 1542 1.153449 CCGGCGCTGGATCAGTAAA 60.153 57.895 32.31 0.00 33.43 2.01
1404 1543 1.154205 CCGGCGCTGGATCAGTAAAG 61.154 60.000 32.31 0.00 33.43 1.85
1405 1544 0.460284 CGGCGCTGGATCAGTAAAGT 60.460 55.000 8.83 0.00 33.43 2.66
1406 1545 1.739067 GGCGCTGGATCAGTAAAGTT 58.261 50.000 7.64 0.00 33.43 2.66
1407 1546 2.737359 CGGCGCTGGATCAGTAAAGTTA 60.737 50.000 8.83 0.00 33.43 2.24
1408 1547 3.467803 GGCGCTGGATCAGTAAAGTTAT 58.532 45.455 7.64 0.00 33.43 1.89
1409 1548 3.877508 GGCGCTGGATCAGTAAAGTTATT 59.122 43.478 7.64 0.00 33.43 1.40
1410 1549 4.024809 GGCGCTGGATCAGTAAAGTTATTC 60.025 45.833 7.64 0.00 33.43 1.75
1412 1551 5.294552 GCGCTGGATCAGTAAAGTTATTCTT 59.705 40.000 0.00 0.00 34.19 2.52
1413 1552 6.479001 GCGCTGGATCAGTAAAGTTATTCTTA 59.521 38.462 0.00 0.00 33.20 2.10
1414 1553 7.516943 GCGCTGGATCAGTAAAGTTATTCTTAC 60.517 40.741 0.00 0.00 33.20 2.34
1415 1554 7.306051 CGCTGGATCAGTAAAGTTATTCTTACG 60.306 40.741 0.00 0.00 33.20 3.18
1417 1556 6.759827 TGGATCAGTAAAGTTATTCTTACGCC 59.240 38.462 0.00 0.00 35.02 5.68
1418 1557 6.074463 GGATCAGTAAAGTTATTCTTACGCCG 60.074 42.308 0.00 0.00 35.02 6.46
1420 1559 4.327898 CAGTAAAGTTATTCTTACGCCGCA 59.672 41.667 0.00 0.00 35.02 5.69
1421 1560 4.931002 AGTAAAGTTATTCTTACGCCGCAA 59.069 37.500 0.00 0.00 35.02 4.85
1422 1561 4.957759 AAAGTTATTCTTACGCCGCAAT 57.042 36.364 0.00 0.00 35.02 3.56
1423 1562 6.757947 AGTAAAGTTATTCTTACGCCGCAATA 59.242 34.615 0.00 0.00 35.02 1.90
1424 1563 5.399604 AAGTTATTCTTACGCCGCAATAC 57.600 39.130 0.00 0.00 34.23 1.89
1425 1564 4.435425 AGTTATTCTTACGCCGCAATACA 58.565 39.130 0.00 0.00 0.00 2.29
1426 1565 4.871557 AGTTATTCTTACGCCGCAATACAA 59.128 37.500 0.00 0.00 0.00 2.41
1427 1566 5.526111 AGTTATTCTTACGCCGCAATACAAT 59.474 36.000 0.00 0.00 0.00 2.71
1428 1567 4.893424 ATTCTTACGCCGCAATACAATT 57.107 36.364 0.00 0.00 0.00 2.32
1429 1568 3.666883 TCTTACGCCGCAATACAATTG 57.333 42.857 3.24 3.24 0.00 2.32
1430 1569 2.353269 TCTTACGCCGCAATACAATTGG 59.647 45.455 10.83 0.00 0.00 3.16
1431 1570 1.740297 TACGCCGCAATACAATTGGT 58.260 45.000 10.83 0.00 0.00 3.67
1432 1571 0.450184 ACGCCGCAATACAATTGGTC 59.550 50.000 10.83 0.00 0.00 4.02
1433 1572 0.248458 CGCCGCAATACAATTGGTCC 60.248 55.000 10.83 0.00 0.00 4.46
1434 1573 0.102300 GCCGCAATACAATTGGTCCC 59.898 55.000 10.83 0.00 0.00 4.46
1435 1574 0.380378 CCGCAATACAATTGGTCCCG 59.620 55.000 10.83 5.70 0.00 5.14
1436 1575 1.091537 CGCAATACAATTGGTCCCGT 58.908 50.000 10.83 0.00 0.00 5.28
1437 1576 1.202132 CGCAATACAATTGGTCCCGTG 60.202 52.381 10.83 0.45 0.00 4.94
1438 1577 2.088423 GCAATACAATTGGTCCCGTGA 58.912 47.619 10.83 0.00 0.00 4.35
1439 1578 2.490115 GCAATACAATTGGTCCCGTGAA 59.510 45.455 10.83 0.00 0.00 3.18
1440 1579 3.427503 GCAATACAATTGGTCCCGTGAAG 60.428 47.826 10.83 0.00 0.00 3.02
1441 1580 3.713826 ATACAATTGGTCCCGTGAAGT 57.286 42.857 10.83 0.00 0.00 3.01
1442 1581 2.358322 ACAATTGGTCCCGTGAAGTT 57.642 45.000 10.83 0.00 0.00 2.66
1443 1582 2.227194 ACAATTGGTCCCGTGAAGTTC 58.773 47.619 10.83 0.00 0.00 3.01
1444 1583 1.196808 CAATTGGTCCCGTGAAGTTCG 59.803 52.381 0.00 0.00 0.00 3.95
1445 1584 0.395312 ATTGGTCCCGTGAAGTTCGT 59.605 50.000 0.00 0.00 0.00 3.85
1446 1585 0.249573 TTGGTCCCGTGAAGTTCGTC 60.250 55.000 0.00 0.00 0.00 4.20
1449 1588 0.666577 GTCCCGTGAAGTTCGTCTGG 60.667 60.000 0.00 0.83 0.00 3.86
1454 1593 2.470821 CGTGAAGTTCGTCTGGACTTT 58.529 47.619 0.00 0.00 0.00 2.66
1455 1594 2.471743 CGTGAAGTTCGTCTGGACTTTC 59.528 50.000 0.00 0.10 0.00 2.62
1463 1602 1.202382 CGTCTGGACTTTCCCGTATCC 60.202 57.143 0.00 0.00 35.03 2.59
1467 1606 2.102588 CTGGACTTTCCCGTATCCGATT 59.897 50.000 0.00 0.00 35.03 3.34
1470 1609 3.311596 GGACTTTCCCGTATCCGATTTTG 59.688 47.826 0.00 0.00 35.63 2.44
1475 1614 4.409718 TCCCGTATCCGATTTTGAATGA 57.590 40.909 0.00 0.00 35.63 2.57
1477 1616 4.814234 TCCCGTATCCGATTTTGAATGAAG 59.186 41.667 0.00 0.00 35.63 3.02
1482 1621 4.424061 TCCGATTTTGAATGAAGCAGTG 57.576 40.909 0.00 0.00 0.00 3.66
1584 1725 1.327690 TGCTCCTCGGCCGAATTAGT 61.328 55.000 30.53 0.00 0.00 2.24
1600 1741 5.463724 CGAATTAGTTCAATCAGGCTACTCC 59.536 44.000 0.00 0.00 33.86 3.85
1627 1768 1.382009 AAACCTTGGCGGGGTTGTT 60.382 52.632 13.31 0.00 45.15 2.83
1704 1845 0.179097 GAAAGGGTTGCGTGCCAAAA 60.179 50.000 0.00 0.00 34.68 2.44
1712 1853 4.873259 GGGTTGCGTGCCAAAATAAATAAT 59.127 37.500 0.00 0.00 34.68 1.28
1803 1944 1.412710 AGACAAAGTCTGCGTCCTCAA 59.587 47.619 0.00 0.00 41.76 3.02
1826 1968 1.589803 AATATCCCGCCTGCGTAAAC 58.410 50.000 10.94 0.00 37.81 2.01
1828 1970 0.466543 TATCCCGCCTGCGTAAACAT 59.533 50.000 10.94 0.00 37.81 2.71
1829 1971 0.393808 ATCCCGCCTGCGTAAACATT 60.394 50.000 10.94 0.00 37.81 2.71
1853 1995 7.524717 TTTTTGTGTTTCCCCAAATTTTCAA 57.475 28.000 0.00 0.00 31.20 2.69
1892 2034 5.668866 GCAACTTGCATCAGTTTCTACTACG 60.669 44.000 8.97 0.00 44.26 3.51
1974 2130 1.670406 CTGGCCAGTCACAGTCTGC 60.670 63.158 25.53 0.00 0.00 4.26
1982 2138 3.312828 CAGTCACAGTCTGCAGTTACTC 58.687 50.000 14.67 0.00 0.00 2.59
2028 2184 4.696479 AGGACTAGGAAATGCCATACTG 57.304 45.455 0.00 0.00 40.02 2.74
2121 2297 1.536331 CGTTTTTGCCGGCCTAGTAAA 59.464 47.619 26.77 14.75 0.00 2.01
2123 2299 3.507786 GTTTTTGCCGGCCTAGTAAATG 58.492 45.455 26.77 0.00 0.00 2.32
2124 2300 2.791347 TTTGCCGGCCTAGTAAATGA 57.209 45.000 26.77 0.00 0.00 2.57
2125 2301 2.032680 TTGCCGGCCTAGTAAATGAC 57.967 50.000 26.77 0.00 0.00 3.06
2200 2376 1.000359 GGGGCCTGTATGTTTGCCT 60.000 57.895 0.84 0.00 43.50 4.75
2202 2378 0.532115 GGGCCTGTATGTTTGCCTTG 59.468 55.000 0.84 0.00 43.50 3.61
2258 2434 3.372440 AGGGAAATCCATTCTCCACAC 57.628 47.619 1.22 0.00 39.55 3.82
2259 2435 2.017049 GGGAAATCCATTCTCCACACG 58.983 52.381 1.22 0.00 38.18 4.49
2260 2436 2.618045 GGGAAATCCATTCTCCACACGT 60.618 50.000 1.22 0.00 38.18 4.49
2272 2448 5.654603 TCTCCACACGTTACTGATTACAT 57.345 39.130 0.00 0.00 0.00 2.29
2284 2460 9.033262 CGTTACTGATTACATTCGTTTGTAAAC 57.967 33.333 13.94 12.36 43.29 2.01
2296 2473 8.547069 CATTCGTTTGTAAACAAAATCCATTGT 58.453 29.630 9.72 0.00 46.08 2.71
2321 2498 1.632920 TGCTGATATGGGGTGTGTGAA 59.367 47.619 0.00 0.00 0.00 3.18
2332 2509 4.900652 TGGGGTGTGTGAACTTTACTACTA 59.099 41.667 0.00 0.00 0.00 1.82
2517 2694 3.675348 TCAATGGCATTGAAGAGGGAT 57.325 42.857 34.19 0.00 45.57 3.85
2701 2915 4.632538 ACCTTTCCTTTTCGTCAAACAG 57.367 40.909 0.00 0.00 0.00 3.16
2751 2965 3.242091 CGCAATCTTATGTCACAAGTCCG 60.242 47.826 0.00 0.00 0.00 4.79
2809 3026 6.594159 CAGGTTTCGACAGTCTTAATTATGGT 59.406 38.462 0.00 0.00 0.00 3.55
2810 3027 6.594159 AGGTTTCGACAGTCTTAATTATGGTG 59.406 38.462 0.00 0.85 0.00 4.17
2887 3104 5.762179 AACACTTGATATCTTGGGACTGA 57.238 39.130 3.98 0.00 0.00 3.41
2950 3169 4.010349 GTTTCCCCCTTCTGTATTGAGTG 58.990 47.826 0.00 0.00 0.00 3.51
3273 3492 9.578439 AATAGTTTCTGCTTCTTCAATTAATGC 57.422 29.630 0.00 0.00 0.00 3.56
3274 3493 7.224522 AGTTTCTGCTTCTTCAATTAATGCT 57.775 32.000 0.00 0.00 0.00 3.79
3275 3494 7.088905 AGTTTCTGCTTCTTCAATTAATGCTG 58.911 34.615 0.00 0.00 0.00 4.41
3276 3495 4.990257 TCTGCTTCTTCAATTAATGCTGC 58.010 39.130 0.00 0.00 0.00 5.25
3425 3644 6.864685 TGTTATTGTTGACTCTAACGTCGATT 59.135 34.615 0.00 0.00 36.71 3.34
3659 3878 5.329035 ACTACCAGCCAAATAATTGCTTG 57.671 39.130 0.00 0.00 35.10 4.01
3682 3901 9.764363 CTTGTGCCAACTGAAGTTCTATATATA 57.236 33.333 4.17 0.00 35.83 0.86
3683 3902 9.764363 TTGTGCCAACTGAAGTTCTATATATAG 57.236 33.333 12.84 12.84 35.83 1.31
3684 3903 7.872993 TGTGCCAACTGAAGTTCTATATATAGC 59.127 37.037 14.03 2.64 35.83 2.97
3685 3904 8.091449 GTGCCAACTGAAGTTCTATATATAGCT 58.909 37.037 14.03 4.78 35.83 3.32
3792 4011 2.094906 CGGACCTGTCTCGTATTGTGAA 60.095 50.000 0.00 0.00 0.00 3.18
3807 4026 7.015289 CGTATTGTGAATATTAGCCATTTCGG 58.985 38.462 0.00 0.00 38.11 4.30
3865 4084 1.372087 CCAAGATTCAGCTCGGTGGC 61.372 60.000 0.00 0.00 0.00 5.01
3895 4114 2.435805 TCAGGAGCAACTGTGAGAACTT 59.564 45.455 7.43 0.00 39.48 2.66
3942 4161 3.013921 TCACAAACTCACAGTTGGGTTC 58.986 45.455 0.00 0.00 46.43 3.62
3962 4183 5.535030 GGTTCTGGAAGGTGTTTAATTGAGT 59.465 40.000 0.00 0.00 0.00 3.41
4033 4254 5.163405 TGGTAGATGTTCCTCTTGATACAGC 60.163 44.000 0.00 0.00 0.00 4.40
4061 4282 1.364328 ACAGGGGAAATATTTGGCCCA 59.636 47.619 20.94 0.00 42.52 5.36
4062 4283 2.022133 ACAGGGGAAATATTTGGCCCAT 60.022 45.455 20.94 14.32 42.52 4.00
4117 4338 7.550551 TCTGCCTTGATTTGAGACAATAAGTAG 59.449 37.037 0.00 0.00 0.00 2.57
4134 4355 3.768878 AGTAGTGTTCCTAGAGTGCACT 58.231 45.455 21.88 21.88 42.25 4.40
4137 4358 2.965831 AGTGTTCCTAGAGTGCACTGAA 59.034 45.455 27.27 18.26 38.74 3.02
4138 4359 3.006323 AGTGTTCCTAGAGTGCACTGAAG 59.994 47.826 27.27 19.90 38.74 3.02
4374 4603 3.990469 CGTAACTGCTCATGAACTCTGTT 59.010 43.478 14.35 14.35 0.00 3.16
4394 4623 8.868522 TCTGTTAATCAATCTTCTGAACCAAT 57.131 30.769 0.00 0.00 0.00 3.16
4418 4647 3.877559 CATGCTTCCTCCTGAACACATA 58.122 45.455 0.00 0.00 0.00 2.29
4426 4655 6.573664 TCCTCCTGAACACATAACATTTTG 57.426 37.500 0.00 0.00 0.00 2.44
4489 4718 2.124860 GGCATGGGGTCGTACCAC 60.125 66.667 0.00 3.32 43.70 4.16
4582 4811 1.229272 AAGGTACCCGCCCTACACA 60.229 57.895 8.74 0.00 0.00 3.72
4869 5114 4.976540 AACCTGGTTTGCTAGTTACTCT 57.023 40.909 6.18 0.00 0.00 3.24
4951 5204 6.751157 TCATTTCATTGCATTGTGAGACTTT 58.249 32.000 8.36 0.00 0.00 2.66
4964 5217 6.304356 TGTGAGACTTTCTGCATTTGTTAG 57.696 37.500 0.00 0.00 0.00 2.34
5036 5289 2.254508 ACCTACTCCCCGGCATAATAC 58.745 52.381 0.00 0.00 0.00 1.89
5069 5322 1.138568 TACTCCCGTCAAACCCCAAA 58.861 50.000 0.00 0.00 0.00 3.28
5071 5324 0.887933 CTCCCGTCAAACCCCAAATG 59.112 55.000 0.00 0.00 0.00 2.32
5072 5325 0.478942 TCCCGTCAAACCCCAAATGA 59.521 50.000 0.00 0.00 0.00 2.57
5073 5326 0.887933 CCCGTCAAACCCCAAATGAG 59.112 55.000 0.00 0.00 0.00 2.90
5074 5327 1.616159 CCGTCAAACCCCAAATGAGT 58.384 50.000 0.00 0.00 0.00 3.41
5075 5328 1.960689 CCGTCAAACCCCAAATGAGTT 59.039 47.619 0.00 0.00 0.00 3.01
5076 5329 3.150767 CCGTCAAACCCCAAATGAGTTA 58.849 45.455 0.00 0.00 0.00 2.24
5103 5406 2.566529 GCTAAGCCGCCCAACAAC 59.433 61.111 0.00 0.00 0.00 3.32
5114 5417 0.307760 CCCAACAACACGAGCTGTTC 59.692 55.000 0.00 0.00 41.50 3.18
5124 5427 2.904011 CGAGCTGTTCGTCTCTAACT 57.096 50.000 5.71 0.00 44.27 2.24
5125 5428 3.204597 CGAGCTGTTCGTCTCTAACTT 57.795 47.619 5.71 0.00 44.27 2.66
5127 5430 4.336101 CGAGCTGTTCGTCTCTAACTTAG 58.664 47.826 5.71 0.00 44.27 2.18
5128 5431 4.093115 CGAGCTGTTCGTCTCTAACTTAGA 59.907 45.833 5.71 0.00 44.27 2.10
5144 8152 5.100344 ACTTAGAGACCATAGAGTCGACA 57.900 43.478 19.50 0.00 41.83 4.35
5151 8159 0.385751 CATAGAGTCGACATGCGGGT 59.614 55.000 19.50 0.00 41.33 5.28
5153 8161 0.963856 TAGAGTCGACATGCGGGTGT 60.964 55.000 19.50 0.00 41.33 4.16
5157 8165 1.374125 TCGACATGCGGGTGTTGAG 60.374 57.895 9.16 0.00 37.54 3.02
5162 8170 3.364441 TGCGGGTGTTGAGCATGC 61.364 61.111 10.51 10.51 35.81 4.06
5195 8203 3.529252 CCAGAGATCGGCATCATCC 57.471 57.895 0.00 0.00 0.00 3.51
5204 8212 3.589881 GCATCATCCCGGCAGCAC 61.590 66.667 0.00 0.00 0.00 4.40
5279 8287 2.166459 TCTCTTCCATAGACGCCAACAG 59.834 50.000 0.00 0.00 0.00 3.16
5341 8349 1.289380 GAGAGGCGTCGAACTGGTT 59.711 57.895 0.00 0.00 0.00 3.67
5354 8362 2.121963 TGGTTGAGGGAGGCCACT 60.122 61.111 5.01 0.00 0.00 4.00
5444 8452 0.107945 GATCGGCAGTTTCCAGAGCT 60.108 55.000 0.00 0.00 0.00 4.09
5489 8497 3.195698 GCCGCGGTGAGAATGGTC 61.196 66.667 28.70 0.93 0.00 4.02
5490 8498 2.579201 CCGCGGTGAGAATGGTCT 59.421 61.111 19.50 0.00 36.55 3.85
5491 8499 1.079127 CCGCGGTGAGAATGGTCTT 60.079 57.895 19.50 0.00 32.80 3.01
5492 8500 1.084370 CCGCGGTGAGAATGGTCTTC 61.084 60.000 19.50 0.00 32.80 2.87
5493 8501 1.084370 CGCGGTGAGAATGGTCTTCC 61.084 60.000 0.00 0.00 32.80 3.46
5494 8502 1.084370 GCGGTGAGAATGGTCTTCCG 61.084 60.000 13.26 13.26 45.79 4.30
5495 8503 1.084370 CGGTGAGAATGGTCTTCCGC 61.084 60.000 7.83 0.00 41.32 5.54
5496 8504 0.036388 GGTGAGAATGGTCTTCCGCA 60.036 55.000 0.00 0.00 32.80 5.69
5497 8505 1.363744 GTGAGAATGGTCTTCCGCAG 58.636 55.000 0.00 0.00 32.80 5.18
5498 8506 0.250234 TGAGAATGGTCTTCCGCAGG 59.750 55.000 0.00 0.00 42.24 4.85
5499 8507 1.092345 GAGAATGGTCTTCCGCAGGC 61.092 60.000 0.00 0.00 40.95 4.85
5536 8544 2.677524 GCCATGGTGAGCAGCCAA 60.678 61.111 14.67 0.00 39.72 4.52
5537 8545 2.998279 GCCATGGTGAGCAGCCAAC 61.998 63.158 14.67 0.00 39.72 3.77
5538 8546 1.604308 CCATGGTGAGCAGCCAACA 60.604 57.895 2.57 4.33 39.72 3.33
5539 8547 1.592400 CCATGGTGAGCAGCCAACAG 61.592 60.000 2.57 1.45 37.16 3.16
5540 8548 0.607217 CATGGTGAGCAGCCAACAGA 60.607 55.000 7.55 0.00 37.16 3.41
5541 8549 0.111061 ATGGTGAGCAGCCAACAGAA 59.889 50.000 7.55 0.00 37.16 3.02
5581 8589 5.048504 GTGTTCATTCCAAATCTCTCAAGCA 60.049 40.000 0.00 0.00 0.00 3.91
5636 8644 2.409055 GCGAGGCCATCATGCACAA 61.409 57.895 5.01 0.00 0.00 3.33
5641 8649 1.518302 GCCATCATGCACAATGCCA 59.482 52.632 0.00 0.00 44.23 4.92
5647 8655 2.668625 TCATGCACAATGCCATACCAT 58.331 42.857 0.00 0.00 44.23 3.55
5663 8671 1.271871 ACCATCAAGATTTGACGCCCA 60.272 47.619 0.00 0.00 43.48 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.619863 GCACTACGATCTACCCAAGTTCAA 60.620 45.833 0.00 0.00 0.00 2.69
1 2 3.119245 GCACTACGATCTACCCAAGTTCA 60.119 47.826 0.00 0.00 0.00 3.18
2 3 3.445857 GCACTACGATCTACCCAAGTTC 58.554 50.000 0.00 0.00 0.00 3.01
3 4 3.521947 GCACTACGATCTACCCAAGTT 57.478 47.619 0.00 0.00 0.00 2.66
17 18 4.083643 GGGGAAAGAGTAAAAACGCACTAC 60.084 45.833 0.00 0.00 0.00 2.73
18 19 4.067192 GGGGAAAGAGTAAAAACGCACTA 58.933 43.478 0.00 0.00 0.00 2.74
19 20 2.882761 GGGGAAAGAGTAAAAACGCACT 59.117 45.455 0.00 0.00 0.00 4.40
20 21 2.882761 AGGGGAAAGAGTAAAAACGCAC 59.117 45.455 0.00 0.00 0.00 5.34
21 22 3.143728 GAGGGGAAAGAGTAAAAACGCA 58.856 45.455 0.00 0.00 0.00 5.24
22 23 3.409570 AGAGGGGAAAGAGTAAAAACGC 58.590 45.455 0.00 0.00 0.00 4.84
23 24 8.039538 AGTATTAGAGGGGAAAGAGTAAAAACG 58.960 37.037 0.00 0.00 0.00 3.60
30 31 9.369672 CTGTATTAGTATTAGAGGGGAAAGAGT 57.630 37.037 0.00 0.00 0.00 3.24
31 32 9.369672 ACTGTATTAGTATTAGAGGGGAAAGAG 57.630 37.037 2.43 0.00 38.04 2.85
32 33 9.364653 GACTGTATTAGTATTAGAGGGGAAAGA 57.635 37.037 2.43 0.00 40.53 2.52
33 34 9.369672 AGACTGTATTAGTATTAGAGGGGAAAG 57.630 37.037 2.43 0.00 40.53 2.62
34 35 9.144298 CAGACTGTATTAGTATTAGAGGGGAAA 57.856 37.037 0.00 0.00 40.53 3.13
36 37 7.239438 CCAGACTGTATTAGTATTAGAGGGGA 58.761 42.308 0.93 0.00 40.53 4.81
37 38 6.071278 GCCAGACTGTATTAGTATTAGAGGGG 60.071 46.154 0.93 0.00 40.53 4.79
38 39 6.493802 TGCCAGACTGTATTAGTATTAGAGGG 59.506 42.308 0.93 0.00 40.53 4.30
40 41 8.580720 ACATGCCAGACTGTATTAGTATTAGAG 58.419 37.037 0.93 0.00 40.53 2.43
41 42 8.478775 ACATGCCAGACTGTATTAGTATTAGA 57.521 34.615 0.93 0.00 40.53 2.10
44 45 9.712305 GAATACATGCCAGACTGTATTAGTATT 57.288 33.333 13.03 13.03 44.49 1.89
46 47 7.289084 TGGAATACATGCCAGACTGTATTAGTA 59.711 37.037 0.93 0.00 44.49 1.82
48 49 6.425114 GTGGAATACATGCCAGACTGTATTAG 59.575 42.308 0.93 0.00 44.49 1.73
49 50 6.126911 TGTGGAATACATGCCAGACTGTATTA 60.127 38.462 0.93 0.00 44.49 0.98
50 51 5.126067 GTGGAATACATGCCAGACTGTATT 58.874 41.667 7.46 7.46 46.16 1.89
51 52 4.164030 TGTGGAATACATGCCAGACTGTAT 59.836 41.667 0.93 0.00 39.61 2.29
52 53 3.517500 TGTGGAATACATGCCAGACTGTA 59.482 43.478 0.93 0.00 34.22 2.74
56 57 2.420022 GTGTGTGGAATACATGCCAGAC 59.580 50.000 9.18 9.18 45.68 3.51
57 58 2.710377 GTGTGTGGAATACATGCCAGA 58.290 47.619 0.00 0.00 41.03 3.86
58 59 1.398041 CGTGTGTGGAATACATGCCAG 59.602 52.381 0.00 0.00 41.03 4.85
63 64 1.075542 CGTGCGTGTGTGGAATACAT 58.924 50.000 0.00 0.00 41.03 2.29
64 65 0.032267 TCGTGCGTGTGTGGAATACA 59.968 50.000 0.00 0.00 34.76 2.29
65 66 0.437295 GTCGTGCGTGTGTGGAATAC 59.563 55.000 0.00 0.00 0.00 1.89
66 67 0.032267 TGTCGTGCGTGTGTGGAATA 59.968 50.000 0.00 0.00 0.00 1.75
67 68 0.812014 TTGTCGTGCGTGTGTGGAAT 60.812 50.000 0.00 0.00 0.00 3.01
68 69 1.448013 TTGTCGTGCGTGTGTGGAA 60.448 52.632 0.00 0.00 0.00 3.53
69 70 2.168503 GTTGTCGTGCGTGTGTGGA 61.169 57.895 0.00 0.00 0.00 4.02
70 71 2.323105 GTTGTCGTGCGTGTGTGG 59.677 61.111 0.00 0.00 0.00 4.17
71 72 1.296577 GTGTTGTCGTGCGTGTGTG 60.297 57.895 0.00 0.00 0.00 3.82
72 73 2.457778 GGTGTTGTCGTGCGTGTGT 61.458 57.895 0.00 0.00 0.00 3.72
73 74 1.701545 AAGGTGTTGTCGTGCGTGTG 61.702 55.000 0.00 0.00 0.00 3.82
75 76 1.275657 GAAGGTGTTGTCGTGCGTG 59.724 57.895 0.00 0.00 0.00 5.34
76 77 1.885850 GGAAGGTGTTGTCGTGCGT 60.886 57.895 0.00 0.00 0.00 5.24
77 78 1.227999 ATGGAAGGTGTTGTCGTGCG 61.228 55.000 0.00 0.00 0.00 5.34
78 79 0.517316 GATGGAAGGTGTTGTCGTGC 59.483 55.000 0.00 0.00 0.00 5.34
79 80 2.169832 AGATGGAAGGTGTTGTCGTG 57.830 50.000 0.00 0.00 0.00 4.35
80 81 2.930826 AAGATGGAAGGTGTTGTCGT 57.069 45.000 0.00 0.00 0.00 4.34
81 82 5.880054 ATTTAAGATGGAAGGTGTTGTCG 57.120 39.130 0.00 0.00 0.00 4.35
82 83 8.336801 AGTAATTTAAGATGGAAGGTGTTGTC 57.663 34.615 0.00 0.00 0.00 3.18
87 88 9.981114 AAAACAAGTAATTTAAGATGGAAGGTG 57.019 29.630 0.00 0.00 0.00 4.00
88 89 9.981114 CAAAACAAGTAATTTAAGATGGAAGGT 57.019 29.630 0.00 0.00 0.00 3.50
89 90 9.423061 CCAAAACAAGTAATTTAAGATGGAAGG 57.577 33.333 0.00 0.00 0.00 3.46
225 235 8.657074 TGTTTACGGGATAATTCAAGATACAG 57.343 34.615 0.00 0.00 0.00 2.74
242 252 2.418628 CCACAGTAGCCATTGTTTACGG 59.581 50.000 0.00 0.00 0.00 4.02
261 271 5.911752 TCTTAAAGAAACATTTGCTTGCCA 58.088 33.333 0.00 0.00 0.00 4.92
306 347 1.730064 CGGGTGTTGTTTACGGATCAG 59.270 52.381 0.00 0.00 0.00 2.90
366 443 8.472007 AATCCCGCATAAAAGGATTGTAAATA 57.528 30.769 2.79 0.00 46.28 1.40
385 463 1.595382 CTGGCGAGGCTTAATCCCG 60.595 63.158 0.00 0.00 0.00 5.14
424 502 8.504812 TCCCATTCCTTTTTCTTTTTCTTTTG 57.495 30.769 0.00 0.00 0.00 2.44
426 504 7.987458 GTCTCCCATTCCTTTTTCTTTTTCTTT 59.013 33.333 0.00 0.00 0.00 2.52
429 507 6.816136 TGTCTCCCATTCCTTTTTCTTTTTC 58.184 36.000 0.00 0.00 0.00 2.29
430 508 6.806668 TGTCTCCCATTCCTTTTTCTTTTT 57.193 33.333 0.00 0.00 0.00 1.94
432 510 6.384015 AGTTTGTCTCCCATTCCTTTTTCTTT 59.616 34.615 0.00 0.00 0.00 2.52
433 511 5.899547 AGTTTGTCTCCCATTCCTTTTTCTT 59.100 36.000 0.00 0.00 0.00 2.52
434 512 5.302823 CAGTTTGTCTCCCATTCCTTTTTCT 59.697 40.000 0.00 0.00 0.00 2.52
435 513 5.532557 CAGTTTGTCTCCCATTCCTTTTTC 58.467 41.667 0.00 0.00 0.00 2.29
510 600 9.050601 GTCCCATCTATTTCTTTCATTGACTAG 57.949 37.037 0.00 0.00 0.00 2.57
518 608 7.094805 CGAGTTTTGTCCCATCTATTTCTTTCA 60.095 37.037 0.00 0.00 0.00 2.69
527 617 2.614481 GGTGCGAGTTTTGTCCCATCTA 60.614 50.000 0.00 0.00 0.00 1.98
556 668 4.415332 GGAGACAACGAGGCGCGA 62.415 66.667 19.52 0.00 44.57 5.87
566 678 4.388499 GGAAGCCGCCGGAGACAA 62.388 66.667 7.68 0.00 0.00 3.18
768 886 6.910536 TGTTGCGTTGGTTTGAAAAATAAT 57.089 29.167 0.00 0.00 0.00 1.28
854 984 3.755626 TGCACCCAACCCAACCCA 61.756 61.111 0.00 0.00 0.00 4.51
855 985 3.230990 GTGCACCCAACCCAACCC 61.231 66.667 5.22 0.00 0.00 4.11
856 986 2.443016 TGTGCACCCAACCCAACC 60.443 61.111 15.69 0.00 0.00 3.77
857 987 1.326951 AAGTGTGCACCCAACCCAAC 61.327 55.000 15.69 2.72 0.00 3.77
858 988 1.000993 AAGTGTGCACCCAACCCAA 59.999 52.632 15.69 0.00 0.00 4.12
900 1030 1.053264 CAGGGGAGGGAGAGATGGTG 61.053 65.000 0.00 0.00 0.00 4.17
962 1092 3.458163 CGTTCCTCGGCTGGGCTA 61.458 66.667 0.00 0.00 35.71 3.93
964 1094 4.821589 CTCGTTCCTCGGCTGGGC 62.822 72.222 0.00 0.00 40.32 5.36
965 1095 4.148825 CCTCGTTCCTCGGCTGGG 62.149 72.222 0.00 0.00 40.32 4.45
966 1096 3.068691 TCCTCGTTCCTCGGCTGG 61.069 66.667 0.00 0.00 40.32 4.85
967 1097 2.492090 CTCCTCGTTCCTCGGCTG 59.508 66.667 0.00 0.00 40.32 4.85
972 1104 2.776913 CCGCTCCTCCTCGTTCCTC 61.777 68.421 0.00 0.00 0.00 3.71
1041 1173 1.758514 CCGCCCCTCTCTGAAGCTA 60.759 63.158 0.00 0.00 0.00 3.32
1224 1356 0.397941 TCCTGCTGGAGTCAACTTGG 59.602 55.000 8.48 0.00 37.46 3.61
1249 1385 5.316987 CAGTTCTTACCAACCCAAGAATCT 58.683 41.667 0.60 0.00 41.45 2.40
1273 1409 0.729690 GCAGAGCTGGAATTCCGTTC 59.270 55.000 19.57 18.92 39.43 3.95
1292 1429 2.486907 GGGGAAGAGAGAATCATGCAGG 60.487 54.545 0.00 0.00 37.82 4.85
1293 1430 2.486907 GGGGGAAGAGAGAATCATGCAG 60.487 54.545 0.00 0.00 37.82 4.41
1335 1472 3.815809 TCCATGGATTGATAAACCGGAC 58.184 45.455 11.44 0.00 0.00 4.79
1361 1499 6.803807 GGCAAGCTCCGATGATAAATAAAATC 59.196 38.462 0.00 0.00 0.00 2.17
1401 1540 4.957759 ATTGCGGCGTAAGAATAACTTT 57.042 36.364 16.72 0.00 39.72 2.66
1402 1541 4.871557 TGTATTGCGGCGTAAGAATAACTT 59.128 37.500 16.72 0.00 42.04 2.66
1403 1542 4.435425 TGTATTGCGGCGTAAGAATAACT 58.565 39.130 16.72 0.00 43.02 2.24
1404 1543 4.782252 TGTATTGCGGCGTAAGAATAAC 57.218 40.909 16.72 9.22 43.02 1.89
1405 1544 5.994887 ATTGTATTGCGGCGTAAGAATAA 57.005 34.783 16.72 11.23 43.02 1.40
1406 1545 5.277586 CCAATTGTATTGCGGCGTAAGAATA 60.278 40.000 16.72 7.49 43.02 1.75
1407 1546 4.497340 CCAATTGTATTGCGGCGTAAGAAT 60.497 41.667 16.72 10.82 43.02 2.40
1408 1547 3.181505 CCAATTGTATTGCGGCGTAAGAA 60.182 43.478 16.72 9.02 43.02 2.52
1409 1548 2.353269 CCAATTGTATTGCGGCGTAAGA 59.647 45.455 16.72 8.98 43.02 2.10
1410 1549 2.096819 ACCAATTGTATTGCGGCGTAAG 59.903 45.455 16.72 2.29 43.44 2.34
1412 1551 1.666700 GACCAATTGTATTGCGGCGTA 59.333 47.619 9.37 0.00 0.00 4.42
1413 1552 0.450184 GACCAATTGTATTGCGGCGT 59.550 50.000 9.37 0.00 0.00 5.68
1414 1553 0.248458 GGACCAATTGTATTGCGGCG 60.248 55.000 0.51 0.51 0.00 6.46
1415 1554 0.102300 GGGACCAATTGTATTGCGGC 59.898 55.000 4.43 0.00 0.00 6.53
1417 1556 1.091537 ACGGGACCAATTGTATTGCG 58.908 50.000 4.43 0.00 0.00 4.85
1418 1557 2.088423 TCACGGGACCAATTGTATTGC 58.912 47.619 4.43 0.00 0.00 3.56
1420 1559 4.028993 ACTTCACGGGACCAATTGTATT 57.971 40.909 4.43 0.00 0.00 1.89
1421 1560 3.713826 ACTTCACGGGACCAATTGTAT 57.286 42.857 4.43 0.00 0.00 2.29
1422 1561 3.404899 GAACTTCACGGGACCAATTGTA 58.595 45.455 4.43 0.00 0.00 2.41
1423 1562 2.227194 GAACTTCACGGGACCAATTGT 58.773 47.619 4.43 0.00 0.00 2.71
1424 1563 1.196808 CGAACTTCACGGGACCAATTG 59.803 52.381 0.00 0.00 0.00 2.32
1425 1564 1.202722 ACGAACTTCACGGGACCAATT 60.203 47.619 0.00 0.00 34.93 2.32
1426 1565 0.395312 ACGAACTTCACGGGACCAAT 59.605 50.000 0.00 0.00 34.93 3.16
1427 1566 0.249573 GACGAACTTCACGGGACCAA 60.250 55.000 0.00 0.00 34.93 3.67
1428 1567 1.111116 AGACGAACTTCACGGGACCA 61.111 55.000 0.00 0.00 34.93 4.02
1429 1568 0.666577 CAGACGAACTTCACGGGACC 60.667 60.000 0.00 0.00 34.93 4.46
1430 1569 0.666577 CCAGACGAACTTCACGGGAC 60.667 60.000 0.00 0.00 34.93 4.46
1431 1570 0.824595 TCCAGACGAACTTCACGGGA 60.825 55.000 0.00 0.00 34.93 5.14
1432 1571 0.666577 GTCCAGACGAACTTCACGGG 60.667 60.000 0.00 0.00 34.93 5.28
1433 1572 0.314302 AGTCCAGACGAACTTCACGG 59.686 55.000 0.00 0.00 36.20 4.94
1434 1573 2.135664 AAGTCCAGACGAACTTCACG 57.864 50.000 0.00 0.00 36.20 4.35
1435 1574 2.801111 GGAAAGTCCAGACGAACTTCAC 59.199 50.000 0.00 0.00 36.28 3.18
1436 1575 2.224209 GGGAAAGTCCAGACGAACTTCA 60.224 50.000 0.00 0.00 38.64 3.02
1437 1576 2.414806 GGGAAAGTCCAGACGAACTTC 58.585 52.381 0.00 0.00 38.64 3.01
1438 1577 1.270147 CGGGAAAGTCCAGACGAACTT 60.270 52.381 0.00 0.00 38.64 2.66
1439 1578 0.317479 CGGGAAAGTCCAGACGAACT 59.683 55.000 0.00 0.00 38.64 3.01
1440 1579 0.033090 ACGGGAAAGTCCAGACGAAC 59.967 55.000 1.22 0.00 38.64 3.95
1441 1580 1.619654 TACGGGAAAGTCCAGACGAA 58.380 50.000 1.22 0.00 38.64 3.85
1442 1581 1.747355 GATACGGGAAAGTCCAGACGA 59.253 52.381 1.22 0.00 38.64 4.20
1443 1582 1.202382 GGATACGGGAAAGTCCAGACG 60.202 57.143 1.22 0.00 38.64 4.18
1444 1583 2.598686 GGATACGGGAAAGTCCAGAC 57.401 55.000 1.22 0.00 38.64 3.51
1463 1602 5.455392 ACTTCACTGCTTCATTCAAAATCG 58.545 37.500 0.00 0.00 0.00 3.34
1467 1606 6.455360 AAGAACTTCACTGCTTCATTCAAA 57.545 33.333 0.00 0.00 0.00 2.69
1470 1609 4.083057 GGGAAGAACTTCACTGCTTCATTC 60.083 45.833 15.02 0.00 39.79 2.67
1475 1614 3.515602 ATGGGAAGAACTTCACTGCTT 57.484 42.857 16.14 0.00 43.19 3.91
1477 1616 5.904362 ATTAATGGGAAGAACTTCACTGC 57.096 39.130 16.14 0.44 43.19 4.40
1482 1621 6.909909 ACGAACAATTAATGGGAAGAACTTC 58.090 36.000 6.06 6.06 38.80 3.01
1584 1725 4.811969 TTAACGGAGTAGCCTGATTGAA 57.188 40.909 0.00 0.00 45.00 2.69
1600 1741 1.201987 CCGCCAAGGTTTCGATTAACG 60.202 52.381 0.00 0.00 38.14 3.18
1712 1853 5.530915 CGGCAATGGAGGAGTAATCATTTAA 59.469 40.000 0.00 0.00 0.00 1.52
1803 1944 0.108585 ACGCAGGCGGGATATTTGAT 59.891 50.000 18.63 0.00 44.69 2.57
1833 1975 7.093322 CAAATTGAAAATTTGGGGAAACACA 57.907 32.000 14.76 0.00 46.89 3.72
1853 1995 1.188863 GTTGCATCTGCTCCCCAAAT 58.811 50.000 3.53 0.00 42.66 2.32
1892 2034 3.137533 AGTCTTTGCAAGAAGAGAGCAC 58.862 45.455 0.00 0.00 39.67 4.40
1974 2130 4.510038 AAAGGCAATGCTTGAGTAACTG 57.490 40.909 4.82 0.00 0.00 3.16
1982 2138 5.039333 GCTTGATAGTAAAGGCAATGCTTG 58.961 41.667 4.82 0.00 0.00 4.01
2028 2184 5.121142 CAGATTGCAATCACCAAATTTGACC 59.879 40.000 34.59 9.18 37.89 4.02
2065 2221 7.532571 CAATCATGCTTCTCTGTTCATTTACA 58.467 34.615 0.00 0.00 0.00 2.41
2066 2222 7.966157 CAATCATGCTTCTCTGTTCATTTAC 57.034 36.000 0.00 0.00 0.00 2.01
2121 2297 3.057969 ACAACATGTGGTCATCGTCAT 57.942 42.857 0.00 0.00 31.15 3.06
2123 2299 2.805671 TCAACAACATGTGGTCATCGTC 59.194 45.455 6.28 0.00 31.15 4.20
2124 2300 2.548057 GTCAACAACATGTGGTCATCGT 59.452 45.455 6.28 0.00 31.15 3.73
2125 2301 2.547634 TGTCAACAACATGTGGTCATCG 59.452 45.455 6.28 0.00 31.20 3.84
2200 2376 2.109834 TCCAATTCTTGAGCCCCTTCAA 59.890 45.455 0.00 0.00 35.83 2.69
2202 2378 2.514458 TCCAATTCTTGAGCCCCTTC 57.486 50.000 0.00 0.00 0.00 3.46
2258 2434 9.033262 GTTTACAAACGAATGTAATCAGTAACG 57.967 33.333 15.04 0.00 43.29 3.18
2259 2435 9.866936 TGTTTACAAACGAATGTAATCAGTAAC 57.133 29.630 17.06 12.37 43.29 2.50
2272 2448 8.480643 AACAATGGATTTTGTTTACAAACGAA 57.519 26.923 7.51 0.00 45.14 3.85
2297 2474 3.257873 CACACACCCCATATCAGCAAAAA 59.742 43.478 0.00 0.00 0.00 1.94
2380 2557 9.160412 GGCAGAAGGTACCTGGAATATATATAT 57.840 37.037 17.14 0.00 32.51 0.86
2381 2558 8.126385 TGGCAGAAGGTACCTGGAATATATATA 58.874 37.037 17.14 0.00 32.51 0.86
2382 2559 6.965866 TGGCAGAAGGTACCTGGAATATATAT 59.034 38.462 17.14 0.00 32.51 0.86
2383 2560 6.327781 TGGCAGAAGGTACCTGGAATATATA 58.672 40.000 17.14 0.00 32.51 0.86
2516 2693 5.811613 CCACACGAATTGCATGGATTAAAAT 59.188 36.000 0.00 0.00 31.69 1.82
2517 2694 5.167121 CCACACGAATTGCATGGATTAAAA 58.833 37.500 0.00 0.00 31.69 1.52
2534 2747 1.994507 CTCGTAGCCTCTCCCACACG 61.995 65.000 0.00 0.00 0.00 4.49
2594 2808 0.664761 CATGCCATAAACCTCCAGCG 59.335 55.000 0.00 0.00 0.00 5.18
2781 2998 0.759346 AAGACTGTCGAAACCTGCCT 59.241 50.000 1.52 0.00 0.00 4.75
2809 3026 3.643320 TGGTCACCAAAAATGTAATGGCA 59.357 39.130 0.00 0.00 37.77 4.92
2810 3027 4.264460 TGGTCACCAAAAATGTAATGGC 57.736 40.909 0.00 0.00 37.77 4.40
2872 3089 4.450419 CGAAAGCATCAGTCCCAAGATATC 59.550 45.833 0.00 0.00 0.00 1.63
2887 3104 4.549458 CAAATTCAACTGGTCGAAAGCAT 58.451 39.130 0.00 0.00 31.28 3.79
3273 3492 2.613595 TGCACTGTTAGAAACACAGCAG 59.386 45.455 9.19 0.00 44.85 4.24
3274 3493 2.354510 GTGCACTGTTAGAAACACAGCA 59.645 45.455 10.32 9.19 44.85 4.41
3275 3494 2.614057 AGTGCACTGTTAGAAACACAGC 59.386 45.455 20.97 5.29 44.85 4.40
3276 3495 3.060272 CGAGTGCACTGTTAGAAACACAG 60.060 47.826 27.27 0.00 46.18 3.66
3659 3878 8.091449 AGCTATATATAGAACTTCAGTTGGCAC 58.909 37.037 21.65 0.50 38.56 5.01
3694 3913 8.514330 AGTCAACCTGTACAAAGTTTATTTCA 57.486 30.769 7.95 0.00 0.00 2.69
3707 3926 6.920569 TCTTTTCAAAGAGTCAACCTGTAC 57.079 37.500 0.00 0.00 39.95 2.90
3792 4011 6.090358 CGTTAATCGTCCGAAATGGCTAATAT 59.910 38.462 0.00 0.00 37.80 1.28
3807 4026 5.961843 TCGTCTATCAACTTCGTTAATCGTC 59.038 40.000 0.00 0.00 40.80 4.20
3829 4048 1.021202 TGGTGGCAACTTCTTTGTCG 58.979 50.000 3.27 0.00 43.37 4.35
3835 4054 3.152341 CTGAATCTTGGTGGCAACTTCT 58.848 45.455 3.27 0.00 37.61 2.85
3865 4084 1.554160 AGTTGCTCCTGATCTGTCTGG 59.446 52.381 0.00 0.00 42.95 3.86
3895 4114 7.428282 TGAAAGTTCACGCTATAAATTGTCA 57.572 32.000 0.00 0.00 31.01 3.58
3942 4161 4.520492 AGCACTCAATTAAACACCTTCCAG 59.480 41.667 0.00 0.00 0.00 3.86
3962 4183 6.140110 GCGACATAAGAAACAAAAGTTAGCA 58.860 36.000 0.00 0.00 0.00 3.49
4033 4254 6.461509 GCCAAATATTTCCCCTGTCATAAGTG 60.462 42.308 0.00 0.00 0.00 3.16
4061 4282 7.875327 ACTAACCGTTATAATTGGAAGCAAT 57.125 32.000 12.27 0.00 0.00 3.56
4062 4283 8.042515 AGTACTAACCGTTATAATTGGAAGCAA 58.957 33.333 12.27 0.00 0.00 3.91
4117 4338 3.243907 ACTTCAGTGCACTCTAGGAACAC 60.244 47.826 18.64 0.00 0.00 3.32
4256 4485 1.153549 GGTGAAGAGGTAGGCTGCG 60.154 63.158 0.00 0.00 0.00 5.18
4259 4488 1.203313 TCCTTGGTGAAGAGGTAGGCT 60.203 52.381 0.00 0.00 34.57 4.58
4347 4576 4.878439 AGTTCATGAGCAGTTACGTGTAA 58.122 39.130 12.41 0.00 0.00 2.41
4374 4603 8.843262 CATGCTATTGGTTCAGAAGATTGATTA 58.157 33.333 0.00 0.00 0.00 1.75
4394 4623 1.908619 TGTTCAGGAGGAAGCATGCTA 59.091 47.619 23.00 0.00 35.82 3.49
4396 4625 0.807496 GTGTTCAGGAGGAAGCATGC 59.193 55.000 10.51 10.51 35.82 4.06
4418 4647 2.543653 GGTTCGTCAGCTGCAAAATGTT 60.544 45.455 9.47 0.00 0.00 2.71
4426 4655 1.237285 AATGTGGGTTCGTCAGCTGC 61.237 55.000 9.47 3.23 0.00 5.25
4489 4718 0.946221 AGTCGAAGCTGAACTTGCCG 60.946 55.000 0.00 0.00 39.29 5.69
4582 4811 2.163810 AGATCCTCTGCTTCTCTGCT 57.836 50.000 0.00 0.00 0.00 4.24
4660 4889 0.818296 TCAGCTAACGCTTCTCCCTC 59.182 55.000 0.00 0.00 46.47 4.30
4869 5114 2.735151 TCCTCTTCATCCTTCACGCTA 58.265 47.619 0.00 0.00 0.00 4.26
4951 5204 5.876357 ACTCCCTTAACTAACAAATGCAGA 58.124 37.500 0.00 0.00 0.00 4.26
4964 5217 6.485648 TCAAGCTTGTTCTAAACTCCCTTAAC 59.514 38.462 25.19 0.00 0.00 2.01
5036 5289 4.817517 ACGGGAGTAACTCATTTGTGTAG 58.182 43.478 0.00 0.00 44.60 2.74
5069 5322 1.958288 AGCCCTGTGGAGTAACTCAT 58.042 50.000 0.00 0.00 31.08 2.90
5071 5324 2.418884 GCTTAGCCCTGTGGAGTAACTC 60.419 54.545 0.00 0.00 0.00 3.01
5072 5325 1.555533 GCTTAGCCCTGTGGAGTAACT 59.444 52.381 0.00 0.00 0.00 2.24
5073 5326 1.407025 GGCTTAGCCCTGTGGAGTAAC 60.407 57.143 13.12 0.00 44.06 2.50
5074 5327 0.909623 GGCTTAGCCCTGTGGAGTAA 59.090 55.000 13.12 0.00 44.06 2.24
5075 5328 2.604118 GGCTTAGCCCTGTGGAGTA 58.396 57.895 13.12 0.00 44.06 2.59
5076 5329 3.404773 GGCTTAGCCCTGTGGAGT 58.595 61.111 13.12 0.00 44.06 3.85
5118 5421 6.985645 GTCGACTCTATGGTCTCTAAGTTAGA 59.014 42.308 8.70 12.05 34.38 2.10
5119 5422 6.762187 TGTCGACTCTATGGTCTCTAAGTTAG 59.238 42.308 17.92 3.29 34.38 2.34
5120 5423 6.647229 TGTCGACTCTATGGTCTCTAAGTTA 58.353 40.000 17.92 0.00 34.38 2.24
5121 5424 5.498393 TGTCGACTCTATGGTCTCTAAGTT 58.502 41.667 17.92 0.00 34.38 2.66
5122 5425 5.100344 TGTCGACTCTATGGTCTCTAAGT 57.900 43.478 17.92 0.00 34.38 2.24
5123 5426 5.561919 GCATGTCGACTCTATGGTCTCTAAG 60.562 48.000 17.92 0.00 34.38 2.18
5124 5427 4.276183 GCATGTCGACTCTATGGTCTCTAA 59.724 45.833 17.92 0.00 34.38 2.10
5125 5428 3.815962 GCATGTCGACTCTATGGTCTCTA 59.184 47.826 17.92 0.00 34.38 2.43
5127 5430 2.603412 CGCATGTCGACTCTATGGTCTC 60.603 54.545 17.92 0.00 41.67 3.36
5128 5431 1.335182 CGCATGTCGACTCTATGGTCT 59.665 52.381 17.92 0.00 41.67 3.85
5130 5433 0.385751 CCGCATGTCGACTCTATGGT 59.614 55.000 17.92 0.00 41.67 3.55
5131 5434 0.319040 CCCGCATGTCGACTCTATGG 60.319 60.000 17.92 11.62 41.67 2.74
5132 5435 0.385751 ACCCGCATGTCGACTCTATG 59.614 55.000 17.92 13.10 41.67 2.23
5133 5436 0.385751 CACCCGCATGTCGACTCTAT 59.614 55.000 17.92 0.00 41.67 1.98
5134 5437 0.963856 ACACCCGCATGTCGACTCTA 60.964 55.000 17.92 0.00 41.67 2.43
5135 5438 1.816863 AACACCCGCATGTCGACTCT 61.817 55.000 17.92 0.82 41.67 3.24
5136 5439 1.374252 AACACCCGCATGTCGACTC 60.374 57.895 17.92 5.11 41.67 3.36
5138 5441 1.626654 CTCAACACCCGCATGTCGAC 61.627 60.000 9.11 9.11 41.67 4.20
5139 5442 1.374125 CTCAACACCCGCATGTCGA 60.374 57.895 10.48 0.00 41.67 4.20
5144 8152 2.703798 GCATGCTCAACACCCGCAT 61.704 57.895 11.37 0.00 44.53 4.73
5151 8159 1.610038 CCACTTCAAGCATGCTCAACA 59.390 47.619 22.93 4.65 0.00 3.33
5153 8161 1.881973 GTCCACTTCAAGCATGCTCAA 59.118 47.619 22.93 15.64 0.00 3.02
5157 8165 0.110056 CGTGTCCACTTCAAGCATGC 60.110 55.000 10.51 10.51 0.00 4.06
5162 8170 0.249868 TCTGGCGTGTCCACTTCAAG 60.250 55.000 0.00 0.00 40.72 3.02
5195 8203 4.335647 ACCCTCAAGTGCTGCCGG 62.336 66.667 0.00 0.00 0.00 6.13
5204 8212 1.230635 CGCTTGTGACCACCCTCAAG 61.231 60.000 0.00 0.00 39.83 3.02
5279 8287 1.512734 CGCCTTCGTGATGCTTTGC 60.513 57.895 0.00 0.00 0.00 3.68
5318 8326 2.989253 TTCGACGCCTCTCCTGCA 60.989 61.111 0.00 0.00 0.00 4.41
5341 8349 2.284921 CCTCAGTGGCCTCCCTCA 60.285 66.667 3.32 0.00 0.00 3.86
5364 8372 4.329545 TCTGGGGCTGACAACGGC 62.330 66.667 0.00 0.00 46.60 5.68
5365 8373 2.358737 GTCTGGGGCTGACAACGG 60.359 66.667 0.00 0.00 33.52 4.44
5366 8374 2.738521 CGTCTGGGGCTGACAACG 60.739 66.667 0.00 0.00 33.00 4.10
5367 8375 1.961277 CACGTCTGGGGCTGACAAC 60.961 63.158 0.00 0.00 33.00 3.32
5368 8376 2.377628 GACACGTCTGGGGCTGACAA 62.378 60.000 0.00 0.00 33.00 3.18
5369 8377 2.842462 ACACGTCTGGGGCTGACA 60.842 61.111 0.00 0.00 33.00 3.58
5370 8378 2.048127 GACACGTCTGGGGCTGAC 60.048 66.667 0.00 0.00 0.00 3.51
5371 8379 3.311110 GGACACGTCTGGGGCTGA 61.311 66.667 0.00 0.00 0.00 4.26
5417 8425 1.936547 GAAACTGCCGATCACCTCATC 59.063 52.381 0.00 0.00 0.00 2.92
5472 8480 3.195698 GACCATTCTCACCGCGGC 61.196 66.667 28.58 0.00 0.00 6.53
5473 8481 1.079127 AAGACCATTCTCACCGCGG 60.079 57.895 26.86 26.86 0.00 6.46
5474 8482 1.084370 GGAAGACCATTCTCACCGCG 61.084 60.000 0.00 0.00 35.97 6.46
5475 8483 1.084370 CGGAAGACCATTCTCACCGC 61.084 60.000 0.00 0.00 41.46 5.68
5476 8484 1.084370 GCGGAAGACCATTCTCACCG 61.084 60.000 12.72 12.72 46.04 4.94
5477 8485 0.036388 TGCGGAAGACCATTCTCACC 60.036 55.000 0.00 0.00 35.59 4.02
5478 8486 1.363744 CTGCGGAAGACCATTCTCAC 58.636 55.000 0.00 0.00 35.59 3.51
5479 8487 0.250234 CCTGCGGAAGACCATTCTCA 59.750 55.000 0.00 0.00 35.59 3.27
5480 8488 1.092345 GCCTGCGGAAGACCATTCTC 61.092 60.000 0.00 0.00 35.59 2.87
5481 8489 1.078143 GCCTGCGGAAGACCATTCT 60.078 57.895 0.00 0.00 35.59 2.40
5482 8490 2.464459 CGCCTGCGGAAGACCATTC 61.464 63.158 3.07 0.00 35.59 2.67
5483 8491 2.436646 CGCCTGCGGAAGACCATT 60.437 61.111 3.07 0.00 35.59 3.16
5484 8492 3.665675 GACGCCTGCGGAAGACCAT 62.666 63.158 16.63 0.00 44.69 3.55
5485 8493 4.373116 GACGCCTGCGGAAGACCA 62.373 66.667 16.63 0.00 44.69 4.02
5519 8527 2.677524 TTGGCTGCTCACCATGGC 60.678 61.111 13.04 0.00 36.96 4.40
5520 8528 1.592400 CTGTTGGCTGCTCACCATGG 61.592 60.000 11.19 11.19 36.96 3.66
5521 8529 0.607217 TCTGTTGGCTGCTCACCATG 60.607 55.000 0.00 0.00 36.96 3.66
5522 8530 0.111061 TTCTGTTGGCTGCTCACCAT 59.889 50.000 0.00 0.00 36.96 3.55
5523 8531 0.535780 CTTCTGTTGGCTGCTCACCA 60.536 55.000 0.00 0.00 34.65 4.17
5524 8532 0.250467 TCTTCTGTTGGCTGCTCACC 60.250 55.000 0.00 0.00 0.00 4.02
5525 8533 1.534595 CTTCTTCTGTTGGCTGCTCAC 59.465 52.381 0.00 0.00 0.00 3.51
5526 8534 1.417517 TCTTCTTCTGTTGGCTGCTCA 59.582 47.619 0.00 0.00 0.00 4.26
5527 8535 2.175878 TCTTCTTCTGTTGGCTGCTC 57.824 50.000 0.00 0.00 0.00 4.26
5528 8536 2.617532 GGATCTTCTTCTGTTGGCTGCT 60.618 50.000 0.00 0.00 0.00 4.24
5529 8537 1.742268 GGATCTTCTTCTGTTGGCTGC 59.258 52.381 0.00 0.00 0.00 5.25
5530 8538 3.269178 GAGGATCTTCTTCTGTTGGCTG 58.731 50.000 0.00 0.00 0.00 4.85
5531 8539 2.093764 CGAGGATCTTCTTCTGTTGGCT 60.094 50.000 3.09 0.00 0.00 4.75
5532 8540 2.275318 CGAGGATCTTCTTCTGTTGGC 58.725 52.381 3.09 0.00 0.00 4.52
5533 8541 2.275318 GCGAGGATCTTCTTCTGTTGG 58.725 52.381 3.09 0.00 0.00 3.77
5534 8542 2.964740 TGCGAGGATCTTCTTCTGTTG 58.035 47.619 3.09 0.00 0.00 3.33
5535 8543 3.902881 ATGCGAGGATCTTCTTCTGTT 57.097 42.857 3.09 0.00 0.00 3.16
5536 8544 3.055530 ACAATGCGAGGATCTTCTTCTGT 60.056 43.478 3.09 0.00 0.00 3.41
5537 8545 3.309138 CACAATGCGAGGATCTTCTTCTG 59.691 47.826 3.09 0.00 0.00 3.02
5538 8546 3.055530 ACACAATGCGAGGATCTTCTTCT 60.056 43.478 3.09 0.00 0.00 2.85
5539 8547 3.265791 ACACAATGCGAGGATCTTCTTC 58.734 45.455 3.09 0.00 0.00 2.87
5540 8548 3.340814 ACACAATGCGAGGATCTTCTT 57.659 42.857 3.09 0.00 0.00 2.52
5541 8549 3.265791 GAACACAATGCGAGGATCTTCT 58.734 45.455 3.09 0.00 0.00 2.85
5616 8624 2.117156 GTGCATGATGGCCTCGCTT 61.117 57.895 3.32 0.00 0.00 4.68
5636 8644 4.276678 CGTCAAATCTTGATGGTATGGCAT 59.723 41.667 4.88 4.88 42.47 4.40
5641 8649 3.214328 GGGCGTCAAATCTTGATGGTAT 58.786 45.455 9.91 0.00 44.83 2.73
5647 8655 0.690192 TCCTGGGCGTCAAATCTTGA 59.310 50.000 0.00 0.00 37.33 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.