Multiple sequence alignment - TraesCS4B01G097300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G097300 chr4B 100.000 2639 0 0 1 2639 101939312 101936674 0.000000e+00 4874
1 TraesCS4B01G097300 chr4D 90.589 2157 145 34 24 2136 69214863 69212721 0.000000e+00 2806
2 TraesCS4B01G097300 chr4D 84.912 285 27 4 2356 2639 69209940 69209671 9.310000e-70 274
3 TraesCS4B01G097300 chr4A 92.068 1286 66 12 109 1373 520955915 520954645 0.000000e+00 1777
4 TraesCS4B01G097300 chr4A 96.256 454 12 1 1321 1769 520954661 520954208 0.000000e+00 739
5 TraesCS4B01G097300 chr4A 88.164 414 41 3 2150 2561 520948090 520947683 1.100000e-133 486
6 TraesCS4B01G097300 chr4A 88.131 396 37 3 1769 2164 520949742 520949357 1.850000e-126 462
7 TraesCS4B01G097300 chr1D 80.159 252 43 3 204 449 365430255 365430505 5.800000e-42 182
8 TraesCS4B01G097300 chr1D 79.681 251 42 6 204 447 482827769 482827521 3.490000e-39 172
9 TraesCS4B01G097300 chr7D 79.231 260 43 6 207 459 386762835 386763090 1.260000e-38 171
10 TraesCS4B01G097300 chr7D 80.180 222 35 5 204 418 603662872 603663091 9.780000e-35 158
11 TraesCS4B01G097300 chr6D 79.268 246 45 3 209 448 2900254 2900009 1.620000e-37 167
12 TraesCS4B01G097300 chr3A 78.689 244 46 6 197 437 529112404 529112644 9.780000e-35 158
13 TraesCS4B01G097300 chr7B 79.060 234 43 4 206 433 590114439 590114672 3.520000e-34 156
14 TraesCS4B01G097300 chr2D 75.658 304 63 8 140 435 641490088 641489788 9.850000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G097300 chr4B 101936674 101939312 2638 True 4874 4874 100.0000 1 2639 1 chr4B.!!$R1 2638
1 TraesCS4B01G097300 chr4D 69209671 69214863 5192 True 1540 2806 87.7505 24 2639 2 chr4D.!!$R1 2615
2 TraesCS4B01G097300 chr4A 520954208 520955915 1707 True 1258 1777 94.1620 109 1769 2 chr4A.!!$R2 1660
3 TraesCS4B01G097300 chr4A 520947683 520949742 2059 True 474 486 88.1475 1769 2561 2 chr4A.!!$R1 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.248661 ATCGATTGAGCTCCGACGTG 60.249 55.0 14.49 0.0 35.02 4.49 F
877 925 0.916358 AACCAGTCCATCTCCCCCTG 60.916 60.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1035 1083 1.135083 CACTTGAACGGTATCGAGCCT 60.135 52.381 0.34 0.0 40.11 4.58 R
2567 5576 0.310543 GCATGTTGCCGTCTTCACAA 59.689 50.000 0.00 0.0 37.42 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.042261 ATAGGGCCCTGTTCCGGT 59.958 61.111 35.81 8.02 0.00 5.28
18 19 1.618447 ATAGGGCCCTGTTCCGGTT 60.618 57.895 35.81 7.15 0.00 4.44
19 20 1.921869 ATAGGGCCCTGTTCCGGTTG 61.922 60.000 35.81 0.00 0.00 3.77
20 21 4.280019 GGGCCCTGTTCCGGTTGT 62.280 66.667 17.04 0.00 0.00 3.32
21 22 2.983592 GGCCCTGTTCCGGTTGTG 60.984 66.667 0.00 0.00 0.00 3.33
22 23 3.670377 GCCCTGTTCCGGTTGTGC 61.670 66.667 0.00 0.00 0.00 4.57
27 28 1.795170 CTGTTCCGGTTGTGCTTGGG 61.795 60.000 0.00 0.00 0.00 4.12
38 39 1.001020 TGCTTGGGCGAATGGTGAT 60.001 52.632 0.00 0.00 42.25 3.06
40 41 1.434696 CTTGGGCGAATGGTGATGC 59.565 57.895 0.00 0.00 0.00 3.91
50 51 4.656041 CGAATGGTGATGCTTCTTCTTTC 58.344 43.478 0.88 6.34 0.00 2.62
53 54 3.415212 TGGTGATGCTTCTTCTTTCAGG 58.585 45.455 0.88 0.00 0.00 3.86
63 64 5.066505 GCTTCTTCTTTCAGGTTGTCTTTCA 59.933 40.000 0.00 0.00 0.00 2.69
71 72 1.344763 AGGTTGTCTTTCAGACTCCGG 59.655 52.381 0.00 0.00 45.27 5.14
74 75 0.966920 TGTCTTTCAGACTCCGGTCC 59.033 55.000 0.00 0.00 45.27 4.46
76 77 1.619332 GTCTTTCAGACTCCGGTCCTT 59.381 52.381 0.00 0.00 41.88 3.36
85 86 0.889306 CTCCGGTCCTTCTCGACTTT 59.111 55.000 0.00 0.00 33.07 2.66
94 95 3.056536 TCCTTCTCGACTTTGTCCATCTG 60.057 47.826 0.00 0.00 0.00 2.90
97 98 4.808414 TCTCGACTTTGTCCATCTGAAT 57.192 40.909 0.00 0.00 0.00 2.57
106 107 7.050377 ACTTTGTCCATCTGAATGTAATCGAT 58.950 34.615 0.00 0.00 0.00 3.59
107 108 7.554118 ACTTTGTCCATCTGAATGTAATCGATT 59.446 33.333 16.15 16.15 0.00 3.34
120 121 0.248661 ATCGATTGAGCTCCGACGTG 60.249 55.000 14.49 0.00 35.02 4.49
228 238 2.749621 AGGGTTTAACGACGACGACTAT 59.250 45.455 15.32 0.00 42.66 2.12
232 242 3.592381 TTAACGACGACGACTATAGCC 57.408 47.619 15.32 0.00 42.66 3.93
238 248 1.524863 CGACGACTATAGCCCCAGGG 61.525 65.000 0.00 0.00 38.57 4.45
290 300 3.326006 ACATCCCAGCTATCATCGACAAT 59.674 43.478 0.00 0.00 0.00 2.71
324 336 1.687123 CGGTAGGGGAGTGATAACAGG 59.313 57.143 0.00 0.00 0.00 4.00
327 339 2.897823 AGGGGAGTGATAACAGGGAT 57.102 50.000 0.00 0.00 0.00 3.85
328 340 2.412591 AGGGGAGTGATAACAGGGATG 58.587 52.381 0.00 0.00 0.00 3.51
333 345 1.831106 AGTGATAACAGGGATGCGTCA 59.169 47.619 8.47 0.00 0.00 4.35
480 504 3.179830 CGGTAATCTTCTCTTCCACACG 58.820 50.000 0.00 0.00 0.00 4.49
494 518 1.601197 ACACGCGTCCTCTCAGAGT 60.601 57.895 9.86 0.00 0.00 3.24
504 528 5.163642 GCGTCCTCTCAGAGTTCATAACTTA 60.164 44.000 0.00 0.00 43.03 2.24
505 529 6.460399 GCGTCCTCTCAGAGTTCATAACTTAT 60.460 42.308 0.00 0.00 43.03 1.73
558 590 9.689976 ATCAGAAATCATACACTTATCTTCTCG 57.310 33.333 0.00 0.00 0.00 4.04
826 874 1.877637 AACTCAACGCATGCACACTA 58.122 45.000 19.57 0.00 0.00 2.74
877 925 0.916358 AACCAGTCCATCTCCCCCTG 60.916 60.000 0.00 0.00 0.00 4.45
941 989 1.137825 GAGCGTGACGAGGAAGAGG 59.862 63.158 10.10 0.00 0.00 3.69
942 990 2.182030 GCGTGACGAGGAAGAGGG 59.818 66.667 10.10 0.00 0.00 4.30
943 991 2.341101 GCGTGACGAGGAAGAGGGA 61.341 63.158 10.10 0.00 0.00 4.20
944 992 1.803943 CGTGACGAGGAAGAGGGAG 59.196 63.158 0.00 0.00 0.00 4.30
1035 1083 3.695606 GACTCGTGCAGGAGGGCA 61.696 66.667 33.05 3.14 42.53 5.36
1203 1251 0.529119 CGCCGTATTACCACCACTCC 60.529 60.000 0.00 0.00 0.00 3.85
1614 1698 4.479993 GCGGAGGTGGATGCTGCT 62.480 66.667 0.00 0.00 0.00 4.24
1649 1733 6.371389 GCTGGTACTTTTGACTATTGTGTTC 58.629 40.000 0.00 0.00 0.00 3.18
1802 1891 8.197439 AGACTGTTTGCTTTTACTTATTTGCTT 58.803 29.630 0.00 0.00 0.00 3.91
1806 1895 9.323985 TGTTTGCTTTTACTTATTTGCTTCATT 57.676 25.926 0.00 0.00 0.00 2.57
1820 1909 4.088634 TGCTTCATTAAGGGAGCAAATGT 58.911 39.130 20.41 0.00 33.35 2.71
1884 1973 9.020731 ACAAAATAAAAGGACCGTGAATCTTAT 57.979 29.630 0.00 0.00 0.00 1.73
1975 2067 1.405661 GGACGAAGAATCACTCACCCC 60.406 57.143 0.00 0.00 0.00 4.95
1998 2090 4.667420 TCGTGGACGAAAAGCCTC 57.333 55.556 0.00 0.00 46.30 4.70
2001 2093 0.790814 CGTGGACGAAAAGCCTCTTC 59.209 55.000 0.00 0.00 43.02 2.87
2010 2102 3.723260 GAAAAGCCTCTTCTCTATCCGG 58.277 50.000 0.00 0.00 0.00 5.14
2025 2117 0.882927 TCCGGTTTCGCACAAAGAGG 60.883 55.000 0.00 0.00 34.56 3.69
2052 2144 7.123098 TGTCTTTGTTATGATACCTACGGAAGA 59.877 37.037 0.00 0.00 0.00 2.87
2061 2153 7.361457 TGATACCTACGGAAGAGAATGAAAT 57.639 36.000 0.00 0.00 0.00 2.17
2098 2190 5.505173 GAGCATCTCTAGCTGATATCCTC 57.495 47.826 0.00 0.00 43.58 3.71
2143 2235 6.012745 ACGGGTTAGAGTTAGAGGAGTAAAA 58.987 40.000 0.00 0.00 0.00 1.52
2144 2236 6.494835 ACGGGTTAGAGTTAGAGGAGTAAAAA 59.505 38.462 0.00 0.00 0.00 1.94
2166 5143 3.468071 TTTACTCCTCAGCCTAGTGGA 57.532 47.619 0.00 0.00 34.57 4.02
2189 5166 4.157289 ACGACTAAAAATACTCCGAGCTCA 59.843 41.667 15.40 0.00 0.00 4.26
2222 5199 3.414549 AAACTTTTCTTTGCGCGAAGA 57.585 38.095 31.72 31.72 34.00 2.87
2320 5298 2.682494 ATGGAGGTGTACGCGGGT 60.682 61.111 12.47 10.91 0.00 5.28
2325 5303 4.303993 GGTGTACGCGGGTGTGGT 62.304 66.667 16.34 0.00 0.00 4.16
2326 5304 3.039588 GTGTACGCGGGTGTGGTG 61.040 66.667 16.34 0.00 0.00 4.17
2327 5305 4.973055 TGTACGCGGGTGTGGTGC 62.973 66.667 16.34 0.00 0.00 5.01
2328 5306 4.675029 GTACGCGGGTGTGGTGCT 62.675 66.667 16.34 0.00 0.00 4.40
2329 5307 4.367023 TACGCGGGTGTGGTGCTC 62.367 66.667 16.34 0.00 0.00 4.26
2336 5314 3.958860 GTGTGGTGCTCCTGCCCT 61.959 66.667 6.34 0.00 38.71 5.19
2337 5315 3.640407 TGTGGTGCTCCTGCCCTC 61.640 66.667 6.34 0.00 38.71 4.30
2338 5316 4.767255 GTGGTGCTCCTGCCCTCG 62.767 72.222 6.34 0.00 38.71 4.63
2362 5340 3.596743 CTAGCGCGGCTGCTCCTA 61.597 66.667 17.03 14.26 45.87 2.94
2406 5415 2.046892 CACCGCCTGTTCTCCTGG 60.047 66.667 0.00 0.00 35.34 4.45
2432 5441 0.036010 AGGAGAATCTGCCAACACCG 60.036 55.000 0.00 0.00 33.73 4.94
2441 5450 2.548295 GCCAACACCGAAAGCCGAA 61.548 57.895 0.00 0.00 41.76 4.30
2461 5470 3.077484 AGACCATGTGTAATGCAAGCT 57.923 42.857 0.00 0.00 0.00 3.74
2466 5475 4.107622 CCATGTGTAATGCAAGCTAAAGC 58.892 43.478 0.00 0.00 42.49 3.51
2554 5563 1.984026 GGTTCCCCATTGCCACCTG 60.984 63.158 0.00 0.00 0.00 4.00
2580 5589 1.001974 AGCACTATTGTGAAGACGGCA 59.998 47.619 11.66 0.00 46.55 5.69
2582 5591 2.412847 GCACTATTGTGAAGACGGCAAC 60.413 50.000 11.66 0.00 46.55 4.17
2583 5592 2.805671 CACTATTGTGAAGACGGCAACA 59.194 45.455 0.50 0.00 46.55 3.33
2609 5618 1.524621 CCAGCCAAGGGACGCATAG 60.525 63.158 0.00 0.00 0.00 2.23
2611 5620 2.902343 GCCAAGGGACGCATAGGC 60.902 66.667 4.58 4.58 34.71 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.618447 AACCGGAACAGGGCCCTAT 60.618 57.895 28.13 12.06 35.02 2.57
1 2 2.204029 AACCGGAACAGGGCCCTA 60.204 61.111 28.13 0.00 35.02 3.53
2 3 3.966543 CAACCGGAACAGGGCCCT 61.967 66.667 22.28 22.28 35.02 5.19
3 4 4.280019 ACAACCGGAACAGGGCCC 62.280 66.667 16.46 16.46 35.02 5.80
4 5 2.983592 CACAACCGGAACAGGGCC 60.984 66.667 9.46 0.00 35.02 5.80
5 6 3.670377 GCACAACCGGAACAGGGC 61.670 66.667 9.46 3.14 35.02 5.19
6 7 1.528309 AAGCACAACCGGAACAGGG 60.528 57.895 9.46 0.00 35.02 4.45
7 8 1.654220 CAAGCACAACCGGAACAGG 59.346 57.895 9.46 0.00 37.30 4.00
8 9 1.654220 CCAAGCACAACCGGAACAG 59.346 57.895 9.46 0.00 0.00 3.16
9 10 1.826054 CCCAAGCACAACCGGAACA 60.826 57.895 9.46 0.00 0.00 3.18
10 11 3.039134 CCCAAGCACAACCGGAAC 58.961 61.111 9.46 0.00 0.00 3.62
11 12 2.909965 GCCCAAGCACAACCGGAA 60.910 61.111 9.46 0.00 39.53 4.30
14 15 2.625823 ATTCGCCCAAGCACAACCG 61.626 57.895 0.00 0.00 39.83 4.44
15 16 1.080569 CATTCGCCCAAGCACAACC 60.081 57.895 0.00 0.00 39.83 3.77
16 17 1.080569 CCATTCGCCCAAGCACAAC 60.081 57.895 0.00 0.00 39.83 3.32
17 18 1.530419 ACCATTCGCCCAAGCACAA 60.530 52.632 0.00 0.00 39.83 3.33
18 19 2.115052 ACCATTCGCCCAAGCACA 59.885 55.556 0.00 0.00 39.83 4.57
19 20 1.315257 ATCACCATTCGCCCAAGCAC 61.315 55.000 0.00 0.00 39.83 4.40
20 21 1.001020 ATCACCATTCGCCCAAGCA 60.001 52.632 0.00 0.00 39.83 3.91
21 22 1.434696 CATCACCATTCGCCCAAGC 59.565 57.895 0.00 0.00 0.00 4.01
22 23 1.033746 AGCATCACCATTCGCCCAAG 61.034 55.000 0.00 0.00 0.00 3.61
27 28 2.012673 AGAAGAAGCATCACCATTCGC 58.987 47.619 0.00 0.00 0.00 4.70
38 39 4.156455 AGACAACCTGAAAGAAGAAGCA 57.844 40.909 0.00 0.00 34.07 3.91
40 41 6.540189 TCTGAAAGACAACCTGAAAGAAGAAG 59.460 38.462 0.00 0.00 38.67 2.85
63 64 0.677414 GTCGAGAAGGACCGGAGTCT 60.677 60.000 9.46 4.36 43.05 3.24
71 72 2.814280 TGGACAAAGTCGAGAAGGAC 57.186 50.000 0.00 0.00 37.19 3.85
74 75 4.179926 TCAGATGGACAAAGTCGAGAAG 57.820 45.455 0.00 0.00 32.65 2.85
76 77 4.021104 ACATTCAGATGGACAAAGTCGAGA 60.021 41.667 0.00 0.00 37.60 4.04
85 86 6.581712 TCAATCGATTACATTCAGATGGACA 58.418 36.000 10.97 0.00 37.60 4.02
94 95 4.149046 GTCGGAGCTCAATCGATTACATTC 59.851 45.833 17.19 6.81 35.35 2.67
97 98 2.540973 CGTCGGAGCTCAATCGATTACA 60.541 50.000 17.19 0.00 35.35 2.41
120 121 1.070914 CTAAGGAGGCGGAAGGAATCC 59.929 57.143 0.00 0.00 45.57 3.01
205 215 2.552315 AGTCGTCGTCGTTAAACCCTTA 59.448 45.455 1.33 0.00 38.33 2.69
218 228 0.822532 CCTGGGGCTATAGTCGTCGT 60.823 60.000 0.84 0.00 0.00 4.34
238 248 4.858680 GCCCCTAAGGACCAGCGC 62.859 72.222 0.00 0.00 38.24 5.92
246 256 2.746277 GTGCACGTGCCCCTAAGG 60.746 66.667 35.72 0.00 41.18 2.69
306 316 3.042059 TCCCTGTTATCACTCCCCTAC 57.958 52.381 0.00 0.00 0.00 3.18
324 336 3.554692 CGAGCCGTTGACGCATCC 61.555 66.667 0.00 0.00 38.18 3.51
345 357 4.988598 ACCGAACCACTGCTGCCG 62.989 66.667 0.00 0.00 0.00 5.69
347 359 3.357079 CCACCGAACCACTGCTGC 61.357 66.667 0.00 0.00 0.00 5.25
460 484 2.930682 GCGTGTGGAAGAGAAGATTACC 59.069 50.000 0.00 0.00 0.00 2.85
462 486 2.230508 ACGCGTGTGGAAGAGAAGATTA 59.769 45.455 12.93 0.00 0.00 1.75
464 488 0.603569 ACGCGTGTGGAAGAGAAGAT 59.396 50.000 12.93 0.00 0.00 2.40
480 504 3.129638 AGTTATGAACTCTGAGAGGACGC 59.870 47.826 14.83 0.63 37.02 5.19
504 528 3.514706 TGGCACAATTGAACAGGCATTAT 59.485 39.130 13.59 0.00 31.92 1.28
505 529 2.896044 TGGCACAATTGAACAGGCATTA 59.104 40.909 13.59 0.00 31.92 1.90
558 590 3.195698 GGCGGCGTGACTGGAATC 61.196 66.667 9.37 0.00 0.00 2.52
941 989 0.610785 CTCTCGCCCTATCTCCCTCC 60.611 65.000 0.00 0.00 0.00 4.30
942 990 0.402504 TCTCTCGCCCTATCTCCCTC 59.597 60.000 0.00 0.00 0.00 4.30
943 991 0.854218 TTCTCTCGCCCTATCTCCCT 59.146 55.000 0.00 0.00 0.00 4.20
944 992 1.253100 CTTCTCTCGCCCTATCTCCC 58.747 60.000 0.00 0.00 0.00 4.30
1035 1083 1.135083 CACTTGAACGGTATCGAGCCT 60.135 52.381 0.34 0.00 40.11 4.58
1077 1125 3.782244 GCGCTCCTCGTGTGCTTG 61.782 66.667 0.00 0.00 41.07 4.01
1614 1698 2.284039 TACCAGCCACGGCCAGTA 60.284 61.111 2.24 4.08 43.17 2.74
1649 1733 4.778415 CGGTCGCCGTCCAGTCAG 62.778 72.222 9.69 0.00 42.73 3.51
1802 1891 4.314522 TCCACATTTGCTCCCTTAATGA 57.685 40.909 0.00 0.00 34.28 2.57
1806 1895 4.016444 GTTCATCCACATTTGCTCCCTTA 58.984 43.478 0.00 0.00 0.00 2.69
1820 1909 2.636647 TGTGAGCAACTGTTCATCCA 57.363 45.000 0.00 0.00 37.59 3.41
1906 1998 8.765219 CAGGGATATAGTTTCGACATTTTGTAG 58.235 37.037 0.00 0.00 0.00 2.74
1950 2042 2.295070 TGAGTGATTCTTCGTCCGTGAA 59.705 45.455 0.00 0.00 0.00 3.18
1998 2090 2.194271 GTGCGAAACCGGATAGAGAAG 58.806 52.381 9.46 0.00 0.00 2.85
2001 2093 2.004583 TTGTGCGAAACCGGATAGAG 57.995 50.000 9.46 0.00 0.00 2.43
2010 2102 1.940613 AGACACCTCTTTGTGCGAAAC 59.059 47.619 0.00 0.00 39.93 2.78
2052 2144 3.726557 TGGACAGCCTCATTTCATTCT 57.273 42.857 0.00 0.00 34.31 2.40
2061 2153 1.571955 TGCTCTTATGGACAGCCTCA 58.428 50.000 0.00 0.00 34.31 3.86
2089 2181 1.748403 GCCAGGTGCGAGGATATCA 59.252 57.895 4.83 0.00 0.00 2.15
2098 2190 4.899239 GGAGATCGGCCAGGTGCG 62.899 72.222 2.24 0.00 42.61 5.34
2143 2235 4.783227 TCCACTAGGCTGAGGAGTAAAATT 59.217 41.667 0.00 0.00 33.74 1.82
2144 2236 4.162509 GTCCACTAGGCTGAGGAGTAAAAT 59.837 45.833 0.00 0.00 33.74 1.82
2166 5143 4.157289 TGAGCTCGGAGTATTTTTAGTCGT 59.843 41.667 9.64 0.00 0.00 4.34
2189 5166 1.109323 AAAGTTTTGCTCCAGCCGCT 61.109 50.000 0.00 0.00 41.18 5.52
2200 5177 3.545873 TCTTCGCGCAAAGAAAAGTTTTG 59.454 39.130 8.66 0.00 38.30 2.44
2222 5199 1.153369 CGACCGGCCACATGAAGAT 60.153 57.895 0.00 0.00 0.00 2.40
2345 5323 3.596743 TAGGAGCAGCCGCGCTAG 61.597 66.667 5.56 0.00 44.01 3.42
2346 5324 3.900892 GTAGGAGCAGCCGCGCTA 61.901 66.667 5.56 0.00 44.01 4.26
2350 5328 4.228567 GAGGGTAGGAGCAGCCGC 62.229 72.222 0.00 0.00 43.43 6.53
2351 5329 3.905678 CGAGGGTAGGAGCAGCCG 61.906 72.222 0.00 0.00 43.43 5.52
2352 5330 2.760385 ACGAGGGTAGGAGCAGCC 60.760 66.667 0.00 0.00 36.27 4.85
2353 5331 2.010582 CTGACGAGGGTAGGAGCAGC 62.011 65.000 0.00 0.00 0.00 5.25
2354 5332 2.010582 GCTGACGAGGGTAGGAGCAG 62.011 65.000 0.00 0.00 0.00 4.24
2406 5415 2.111384 TGGCAGATTCTCCTAGACCAC 58.889 52.381 0.00 0.00 0.00 4.16
2432 5441 1.523758 ACACATGGTCTTCGGCTTTC 58.476 50.000 0.00 0.00 0.00 2.62
2441 5450 3.077484 AGCTTGCATTACACATGGTCT 57.923 42.857 0.00 0.00 0.00 3.85
2461 5470 5.700722 TTGACGTAGAACTCTGAGCTTTA 57.299 39.130 4.19 0.00 0.00 1.85
2512 5521 2.649331 GGAGTTGTACTGCGAGCTAA 57.351 50.000 0.00 0.00 0.00 3.09
2520 5529 0.395312 AACCCACCGGAGTTGTACTG 59.605 55.000 9.46 0.00 0.00 2.74
2554 5563 4.667668 CGTCTTCACAATAGTGCTCTTTGC 60.668 45.833 0.00 0.00 45.49 3.68
2556 5565 3.997021 CCGTCTTCACAATAGTGCTCTTT 59.003 43.478 0.00 0.00 45.49 2.52
2561 5570 1.438651 TGCCGTCTTCACAATAGTGC 58.561 50.000 0.00 0.00 45.49 4.40
2563 5572 3.120321 TGTTGCCGTCTTCACAATAGT 57.880 42.857 0.00 0.00 0.00 2.12
2564 5573 3.728864 GCATGTTGCCGTCTTCACAATAG 60.729 47.826 0.00 0.00 37.42 1.73
2565 5574 2.161410 GCATGTTGCCGTCTTCACAATA 59.839 45.455 0.00 0.00 37.42 1.90
2566 5575 1.068333 GCATGTTGCCGTCTTCACAAT 60.068 47.619 0.00 0.00 37.42 2.71
2567 5576 0.310543 GCATGTTGCCGTCTTCACAA 59.689 50.000 0.00 0.00 37.42 3.33
2568 5577 1.840630 CGCATGTTGCCGTCTTCACA 61.841 55.000 0.00 0.00 41.12 3.58
2569 5578 1.154413 CGCATGTTGCCGTCTTCAC 60.154 57.895 0.00 0.00 41.12 3.18
2570 5579 1.291184 CTCGCATGTTGCCGTCTTCA 61.291 55.000 0.00 0.00 41.12 3.02
2571 5580 1.421485 CTCGCATGTTGCCGTCTTC 59.579 57.895 0.00 0.00 41.12 2.87
2572 5581 2.034879 CCTCGCATGTTGCCGTCTT 61.035 57.895 0.00 0.00 41.12 3.01
2573 5582 2.434884 CCTCGCATGTTGCCGTCT 60.435 61.111 0.00 0.00 41.12 4.18
2574 5583 4.166011 GCCTCGCATGTTGCCGTC 62.166 66.667 0.00 0.00 41.12 4.79
2580 5589 3.866379 TTGGCTGGCCTCGCATGTT 62.866 57.895 17.38 0.00 36.94 2.71
2582 5591 3.515286 CTTGGCTGGCCTCGCATG 61.515 66.667 17.38 0.00 36.94 4.06
2583 5592 4.809496 CCTTGGCTGGCCTCGCAT 62.809 66.667 17.38 0.00 36.94 4.73
2607 5616 1.595993 GCTCACTCACTCCACGCCTA 61.596 60.000 0.00 0.00 0.00 3.93
2609 5618 2.433318 GCTCACTCACTCCACGCC 60.433 66.667 0.00 0.00 0.00 5.68
2611 5620 1.154131 CTCGCTCACTCACTCCACG 60.154 63.158 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.