Multiple sequence alignment - TraesCS4B01G095700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G095700 chr4B 100.000 2549 0 0 1 2549 99266840 99264292 0.000000e+00 4708.0
1 TraesCS4B01G095700 chr4B 90.925 584 39 7 987 1563 99082144 99081568 0.000000e+00 773.0
2 TraesCS4B01G095700 chr4D 89.134 1675 75 41 387 2000 67275651 67274023 0.000000e+00 1986.0
3 TraesCS4B01G095700 chr4D 89.240 697 59 9 874 1563 67244832 67244145 0.000000e+00 857.0
4 TraesCS4B01G095700 chr4D 90.667 300 23 1 107 401 67275978 67275679 6.610000e-106 394.0
5 TraesCS4B01G095700 chr4D 79.268 164 22 9 2195 2348 21984098 21984259 1.250000e-18 104.0
6 TraesCS4B01G095700 chr4A 93.320 1003 53 9 773 1773 516370301 516369311 0.000000e+00 1469.0
7 TraesCS4B01G095700 chr4A 89.542 698 56 10 874 1563 516355530 516354842 0.000000e+00 869.0
8 TraesCS4B01G095700 chr4A 88.998 409 30 7 368 774 516370728 516370333 2.280000e-135 492.0
9 TraesCS4B01G095700 chr4A 95.192 104 5 0 1825 1928 516368679 516368576 5.640000e-37 165.0
10 TraesCS4B01G095700 chr4A 95.506 89 4 0 256 344 516370811 516370723 2.640000e-30 143.0
11 TraesCS4B01G095700 chr4A 77.128 188 30 8 2195 2374 715329073 715328891 2.090000e-16 97.1
12 TraesCS4B01G095700 chr4A 91.803 61 3 2 1 61 516382439 516382381 1.630000e-12 84.2
13 TraesCS4B01G095700 chr3D 77.078 397 75 8 2166 2548 308743184 308742790 5.520000e-52 215.0
14 TraesCS4B01G095700 chr3D 78.000 350 63 11 2213 2549 63361462 63361810 9.240000e-50 207.0
15 TraesCS4B01G095700 chr3D 73.005 426 84 25 2135 2546 300118305 300117897 1.240000e-23 121.0
16 TraesCS4B01G095700 chr3D 73.846 325 60 17 2222 2537 587538340 587538032 3.470000e-19 106.0
17 TraesCS4B01G095700 chr6B 78.502 307 52 10 2252 2547 39174708 39175011 3.350000e-44 189.0
18 TraesCS4B01G095700 chr3A 80.658 243 37 5 2316 2548 485959339 485959097 2.010000e-41 180.0
19 TraesCS4B01G095700 chr2D 85.185 162 22 2 2388 2548 138962837 138962997 5.640000e-37 165.0
20 TraesCS4B01G095700 chr2D 77.953 254 45 5 2304 2548 61283903 61284154 5.680000e-32 148.0
21 TraesCS4B01G095700 chr2D 74.790 357 67 16 2198 2546 344340367 344340708 3.420000e-29 139.0
22 TraesCS4B01G095700 chr2D 86.842 76 9 1 6 80 437951551 437951476 1.630000e-12 84.2
23 TraesCS4B01G095700 chr7B 73.706 483 93 25 2068 2530 696275759 696275291 9.440000e-35 158.0
24 TraesCS4B01G095700 chr5D 74.656 363 62 21 2195 2546 112329399 112329742 1.590000e-27 134.0
25 TraesCS4B01G095700 chr5D 75.962 208 35 13 2135 2332 341685436 341685234 2.700000e-15 93.5
26 TraesCS4B01G095700 chr6D 73.350 409 81 20 2153 2548 267726719 267727112 2.660000e-25 126.0
27 TraesCS4B01G095700 chr3B 82.000 150 23 2 2393 2539 733752388 733752536 9.580000e-25 124.0
28 TraesCS4B01G095700 chr1A 75.556 270 54 7 2222 2482 571645001 571645267 3.440000e-24 122.0
29 TraesCS4B01G095700 chr1A 79.699 133 21 5 1 131 65808013 65808141 9.710000e-15 91.6
30 TraesCS4B01G095700 chr1B 84.000 125 20 0 2424 2548 310392346 310392470 1.240000e-23 121.0
31 TraesCS4B01G095700 chr1B 77.600 125 18 8 1 123 171638391 171638507 1.640000e-07 67.6
32 TraesCS4B01G095700 chrUn 80.882 136 19 7 1 134 444395278 444395408 1.610000e-17 100.0
33 TraesCS4B01G095700 chr7A 80.882 136 19 7 1 134 706133884 706133754 1.610000e-17 100.0
34 TraesCS4B01G095700 chr7A 80.882 136 19 7 1 134 706134972 706134842 1.610000e-17 100.0
35 TraesCS4B01G095700 chr7A 86.667 75 6 3 1 75 661847748 661847678 2.100000e-11 80.5
36 TraesCS4B01G095700 chr2B 80.714 140 11 12 3 134 97393675 97393544 7.510000e-16 95.3
37 TraesCS4B01G095700 chr2A 73.186 317 63 15 2229 2538 144894852 144894551 7.510000e-16 95.3
38 TraesCS4B01G095700 chr2A 82.243 107 12 6 3 109 62368424 62368325 4.520000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G095700 chr4B 99264292 99266840 2548 True 4708.00 4708 100.0000 1 2549 1 chr4B.!!$R2 2548
1 TraesCS4B01G095700 chr4B 99081568 99082144 576 True 773.00 773 90.9250 987 1563 1 chr4B.!!$R1 576
2 TraesCS4B01G095700 chr4D 67274023 67275978 1955 True 1190.00 1986 89.9005 107 2000 2 chr4D.!!$R2 1893
3 TraesCS4B01G095700 chr4D 67244145 67244832 687 True 857.00 857 89.2400 874 1563 1 chr4D.!!$R1 689
4 TraesCS4B01G095700 chr4A 516354842 516355530 688 True 869.00 869 89.5420 874 1563 1 chr4A.!!$R1 689
5 TraesCS4B01G095700 chr4A 516368576 516370811 2235 True 567.25 1469 93.2540 256 1928 4 chr4A.!!$R4 1672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 339 0.036306 AAGGCAAGGAACGGTACTGG 59.964 55.0 6.65 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2901 0.033504 AGTCTAACACGGTGTGGCAG 59.966 55.0 15.53 12.21 37.94 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.719355 TTCATATACTAGTGCAAAAGAAAGTCA 57.281 29.630 5.39 0.00 0.00 3.41
29 30 9.719355 TCATATACTAGTGCAAAAGAAAGTCAA 57.281 29.630 5.39 0.00 0.00 3.18
33 34 9.899226 ATACTAGTGCAAAAGAAAGTCAAATTC 57.101 29.630 5.39 0.00 0.00 2.17
34 35 6.912591 ACTAGTGCAAAAGAAAGTCAAATTCG 59.087 34.615 0.00 0.00 32.04 3.34
35 36 5.650543 AGTGCAAAAGAAAGTCAAATTCGT 58.349 33.333 0.00 0.00 32.04 3.85
36 37 6.099341 AGTGCAAAAGAAAGTCAAATTCGTT 58.901 32.000 0.00 0.00 31.31 3.85
37 38 6.253512 AGTGCAAAAGAAAGTCAAATTCGTTC 59.746 34.615 0.00 0.00 30.04 3.95
38 39 6.253512 GTGCAAAAGAAAGTCAAATTCGTTCT 59.746 34.615 0.00 0.00 35.79 3.01
39 40 7.431084 GTGCAAAAGAAAGTCAAATTCGTTCTA 59.569 33.333 0.00 0.00 33.90 2.10
40 41 7.971168 TGCAAAAGAAAGTCAAATTCGTTCTAA 59.029 29.630 0.00 0.00 33.90 2.10
41 42 8.803799 GCAAAAGAAAGTCAAATTCGTTCTAAA 58.196 29.630 0.00 0.00 33.90 1.85
67 68 9.796120 AAAAACTTCTGAATTATTTTGACGTCA 57.204 25.926 15.76 15.76 0.00 4.35
68 69 9.965824 AAAACTTCTGAATTATTTTGACGTCAT 57.034 25.926 20.80 7.28 0.00 3.06
69 70 9.965824 AAACTTCTGAATTATTTTGACGTCATT 57.034 25.926 20.80 9.46 0.00 2.57
70 71 9.965824 AACTTCTGAATTATTTTGACGTCATTT 57.034 25.926 20.80 9.70 0.00 2.32
71 72 9.398170 ACTTCTGAATTATTTTGACGTCATTTG 57.602 29.630 20.80 6.95 0.00 2.32
72 73 9.398170 CTTCTGAATTATTTTGACGTCATTTGT 57.602 29.630 20.80 8.63 0.00 2.83
125 126 8.827677 GTGTATATACAATCAGGAACCAAAGTC 58.172 37.037 17.07 0.00 38.04 3.01
136 137 4.017126 GGAACCAAAGTCTATTTCCCCTG 58.983 47.826 0.00 0.00 31.19 4.45
138 139 2.017049 CCAAAGTCTATTTCCCCTGCG 58.983 52.381 0.00 0.00 0.00 5.18
141 142 4.258543 CAAAGTCTATTTCCCCTGCGTAA 58.741 43.478 0.00 0.00 0.00 3.18
144 145 4.913784 AGTCTATTTCCCCTGCGTAAAAA 58.086 39.130 0.00 0.00 0.00 1.94
176 177 7.814264 AATCTAGAAATGTGCCAAGATTAGG 57.186 36.000 0.00 0.00 33.20 2.69
182 183 6.494835 AGAAATGTGCCAAGATTAGGTTTTCT 59.505 34.615 0.00 0.00 0.00 2.52
205 206 9.515020 TTCTGTTCACAAAATTCATCTACAAAC 57.485 29.630 0.00 0.00 0.00 2.93
237 238 3.411808 GTGATAGCACACGGACGAA 57.588 52.632 6.17 0.00 44.51 3.85
239 240 0.108992 TGATAGCACACGGACGAACC 60.109 55.000 0.00 0.00 0.00 3.62
254 255 4.157289 GGACGAACCATCAACTCAGTACTA 59.843 45.833 0.00 0.00 38.79 1.82
260 261 4.098044 ACCATCAACTCAGTACTACCATCG 59.902 45.833 0.00 0.00 0.00 3.84
333 339 0.036306 AAGGCAAGGAACGGTACTGG 59.964 55.000 6.65 0.00 0.00 4.00
404 451 0.040514 CAAACGCCTTGCAATCGTGA 60.041 50.000 22.01 0.00 36.49 4.35
450 497 2.840572 GCCCCAACCCAAAACCGT 60.841 61.111 0.00 0.00 0.00 4.83
455 502 0.869730 CCAACCCAAAACCGTACGAG 59.130 55.000 18.76 9.56 0.00 4.18
465 512 1.213013 CCGTACGAGACAGCAGCTT 59.787 57.895 18.76 0.00 0.00 3.74
483 532 5.109903 CAGCTTACCTACTACCAACATGAC 58.890 45.833 0.00 0.00 0.00 3.06
520 569 0.536006 GCTTGTTGCCTGTCCTGTCT 60.536 55.000 0.00 0.00 35.15 3.41
542 591 0.037232 CTCAACCCAAGTCGGTCTCC 60.037 60.000 0.00 0.00 33.98 3.71
577 626 7.907389 TCAGTTATTACACCATCTCTTTCACT 58.093 34.615 0.00 0.00 0.00 3.41
584 633 5.080337 ACACCATCTCTTTCACTAGTCTCA 58.920 41.667 0.00 0.00 0.00 3.27
585 634 5.540337 ACACCATCTCTTTCACTAGTCTCAA 59.460 40.000 0.00 0.00 0.00 3.02
690 739 0.690762 GTGGCCTCACCTCACCTAAA 59.309 55.000 3.32 0.00 40.22 1.85
700 749 2.168496 CCTCACCTAAAGAGTCCACGA 58.832 52.381 0.00 0.00 0.00 4.35
706 755 3.581332 ACCTAAAGAGTCCACGATTTCCA 59.419 43.478 0.00 0.00 0.00 3.53
784 869 6.262056 AGAGAAAGGAGGAAAAAGTTACCA 57.738 37.500 0.00 0.00 0.00 3.25
785 870 6.853490 AGAGAAAGGAGGAAAAAGTTACCAT 58.147 36.000 0.00 0.00 0.00 3.55
786 871 7.298374 AGAGAAAGGAGGAAAAAGTTACCATT 58.702 34.615 0.00 0.00 0.00 3.16
787 872 7.448777 AGAGAAAGGAGGAAAAAGTTACCATTC 59.551 37.037 0.00 0.00 0.00 2.67
788 873 6.493802 AGAAAGGAGGAAAAAGTTACCATTCC 59.506 38.462 0.00 4.02 41.32 3.01
810 899 2.440796 CTACCGGGCCGACCACTA 60.441 66.667 30.79 7.25 40.22 2.74
841 930 2.021793 CACATGCGCACCGAATCG 59.978 61.111 14.90 0.00 0.00 3.34
843 932 2.167219 ACATGCGCACCGAATCGAG 61.167 57.895 14.90 0.00 0.00 4.04
844 933 2.167219 CATGCGCACCGAATCGAGT 61.167 57.895 14.90 0.00 0.00 4.18
845 934 2.167219 ATGCGCACCGAATCGAGTG 61.167 57.895 14.90 16.16 37.05 3.51
846 935 2.506217 GCGCACCGAATCGAGTGA 60.506 61.111 21.94 0.00 36.01 3.41
847 936 2.789203 GCGCACCGAATCGAGTGAC 61.789 63.158 21.94 14.26 36.01 3.67
848 937 1.154016 CGCACCGAATCGAGTGACT 60.154 57.895 21.94 0.00 36.01 3.41
850 939 1.078759 GCACCGAATCGAGTGACTGG 61.079 60.000 21.94 0.00 36.01 4.00
904 995 3.402681 CTCCCATGTCCGGCCACT 61.403 66.667 2.24 0.00 0.00 4.00
918 1009 1.768684 GCCACTCCACCTCACCTGAA 61.769 60.000 0.00 0.00 0.00 3.02
969 1061 0.821517 CCCTTTTTCGCCATTACCCC 59.178 55.000 0.00 0.00 0.00 4.95
1101 1202 3.679389 CCTGACCAAGTTCAAGCTGTAT 58.321 45.455 0.00 0.00 0.00 2.29
1584 1688 9.125026 CCAGAGGTTAATTTAGCTAATGATGTT 57.875 33.333 7.08 1.19 0.00 2.71
1615 1719 7.094549 CCATGACTAACGGAAAAGATGGTTTTA 60.095 37.037 0.00 0.00 0.00 1.52
1676 1780 1.138859 TCGTGATGGATGATGGGTGTC 59.861 52.381 0.00 0.00 0.00 3.67
1678 1782 2.365293 CGTGATGGATGATGGGTGTCTA 59.635 50.000 0.00 0.00 0.00 2.59
1741 1846 1.362355 GGTGCGTCAACTTTTGGGG 59.638 57.895 0.00 0.00 0.00 4.96
1813 2533 2.933906 TGTGTGAGAAAAACGGTCAGTC 59.066 45.455 0.00 0.00 0.00 3.51
1816 2536 2.471743 GTGAGAAAAACGGTCAGTCGAG 59.528 50.000 0.00 0.00 0.00 4.04
1831 2554 2.372172 AGTCGAGAAAGGTTCAATGGGT 59.628 45.455 0.00 0.00 0.00 4.51
1833 2556 1.812571 CGAGAAAGGTTCAATGGGTGG 59.187 52.381 0.00 0.00 0.00 4.61
1936 2659 3.342627 CGGCGAGGCGTTGTTTCA 61.343 61.111 0.00 0.00 0.00 2.69
1938 2661 1.134694 GGCGAGGCGTTGTTTCATC 59.865 57.895 0.00 0.00 0.00 2.92
1939 2662 1.134694 GCGAGGCGTTGTTTCATCC 59.865 57.895 0.00 0.00 0.00 3.51
1940 2663 1.298859 GCGAGGCGTTGTTTCATCCT 61.299 55.000 0.00 0.00 0.00 3.24
1943 2666 1.464997 GAGGCGTTGTTTCATCCTGTC 59.535 52.381 0.00 0.00 0.00 3.51
1944 2667 0.521735 GGCGTTGTTTCATCCTGTCC 59.478 55.000 0.00 0.00 0.00 4.02
1945 2668 0.521735 GCGTTGTTTCATCCTGTCCC 59.478 55.000 0.00 0.00 0.00 4.46
1946 2669 1.882352 GCGTTGTTTCATCCTGTCCCT 60.882 52.381 0.00 0.00 0.00 4.20
1947 2670 2.076863 CGTTGTTTCATCCTGTCCCTC 58.923 52.381 0.00 0.00 0.00 4.30
1948 2671 2.289694 CGTTGTTTCATCCTGTCCCTCT 60.290 50.000 0.00 0.00 0.00 3.69
1949 2672 3.756117 GTTGTTTCATCCTGTCCCTCTT 58.244 45.455 0.00 0.00 0.00 2.85
1950 2673 3.423539 TGTTTCATCCTGTCCCTCTTG 57.576 47.619 0.00 0.00 0.00 3.02
1951 2674 2.087646 GTTTCATCCTGTCCCTCTTGC 58.912 52.381 0.00 0.00 0.00 4.01
1952 2675 0.250234 TTCATCCTGTCCCTCTTGCG 59.750 55.000 0.00 0.00 0.00 4.85
1953 2676 1.153289 CATCCTGTCCCTCTTGCGG 60.153 63.158 0.00 0.00 0.00 5.69
1954 2677 1.613630 ATCCTGTCCCTCTTGCGGT 60.614 57.895 0.00 0.00 0.00 5.68
1955 2678 1.617947 ATCCTGTCCCTCTTGCGGTC 61.618 60.000 0.00 0.00 0.00 4.79
1956 2679 2.125912 CTGTCCCTCTTGCGGTCG 60.126 66.667 0.00 0.00 0.00 4.79
2000 2723 3.552384 TGACGGGGTGACGGCTTT 61.552 61.111 0.00 0.00 43.79 3.51
2001 2724 3.047877 GACGGGGTGACGGCTTTG 61.048 66.667 0.00 0.00 39.25 2.77
2002 2725 4.636435 ACGGGGTGACGGCTTTGG 62.636 66.667 0.00 0.00 38.39 3.28
2003 2726 4.636435 CGGGGTGACGGCTTTGGT 62.636 66.667 0.00 0.00 0.00 3.67
2004 2727 2.983592 GGGGTGACGGCTTTGGTG 60.984 66.667 0.00 0.00 0.00 4.17
2005 2728 2.983592 GGGTGACGGCTTTGGTGG 60.984 66.667 0.00 0.00 0.00 4.61
2006 2729 2.203294 GGTGACGGCTTTGGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
2007 2730 1.826487 GGTGACGGCTTTGGTGGTT 60.826 57.895 0.00 0.00 0.00 3.67
2008 2731 1.358759 GTGACGGCTTTGGTGGTTG 59.641 57.895 0.00 0.00 0.00 3.77
2009 2732 1.098712 GTGACGGCTTTGGTGGTTGA 61.099 55.000 0.00 0.00 0.00 3.18
2010 2733 0.817634 TGACGGCTTTGGTGGTTGAG 60.818 55.000 0.00 0.00 0.00 3.02
2011 2734 1.515521 GACGGCTTTGGTGGTTGAGG 61.516 60.000 0.00 0.00 0.00 3.86
2012 2735 2.268076 CGGCTTTGGTGGTTGAGGG 61.268 63.158 0.00 0.00 0.00 4.30
2013 2736 2.574018 GGCTTTGGTGGTTGAGGGC 61.574 63.158 0.00 0.00 0.00 5.19
2014 2737 1.832167 GCTTTGGTGGTTGAGGGCA 60.832 57.895 0.00 0.00 0.00 5.36
2015 2738 1.187567 GCTTTGGTGGTTGAGGGCAT 61.188 55.000 0.00 0.00 0.00 4.40
2016 2739 0.890683 CTTTGGTGGTTGAGGGCATC 59.109 55.000 0.00 0.00 0.00 3.91
2017 2740 0.482446 TTTGGTGGTTGAGGGCATCT 59.518 50.000 0.00 0.00 0.00 2.90
2018 2741 0.038166 TTGGTGGTTGAGGGCATCTC 59.962 55.000 0.00 0.00 42.74 2.75
2019 2742 0.842030 TGGTGGTTGAGGGCATCTCT 60.842 55.000 0.00 0.00 42.86 3.10
2020 2743 1.204146 GGTGGTTGAGGGCATCTCTA 58.796 55.000 0.00 0.00 42.86 2.43
2021 2744 1.559682 GGTGGTTGAGGGCATCTCTAA 59.440 52.381 0.00 0.00 42.86 2.10
2022 2745 2.026262 GGTGGTTGAGGGCATCTCTAAA 60.026 50.000 0.00 0.00 42.86 1.85
2023 2746 3.274288 GTGGTTGAGGGCATCTCTAAAG 58.726 50.000 0.00 0.00 42.86 1.85
2024 2747 2.293170 GGTTGAGGGCATCTCTAAAGC 58.707 52.381 0.00 0.00 42.86 3.51
2025 2748 2.356125 GGTTGAGGGCATCTCTAAAGCA 60.356 50.000 0.00 0.00 42.86 3.91
2026 2749 2.941720 GTTGAGGGCATCTCTAAAGCAG 59.058 50.000 0.00 0.00 42.86 4.24
2027 2750 2.470990 TGAGGGCATCTCTAAAGCAGA 58.529 47.619 0.00 0.00 42.86 4.26
2039 2762 6.768029 CTCTAAAGCAGAGCATCAGATAAC 57.232 41.667 0.00 0.00 44.34 1.89
2040 2763 5.605534 TCTAAAGCAGAGCATCAGATAACC 58.394 41.667 0.00 0.00 37.82 2.85
2041 2764 2.522836 AGCAGAGCATCAGATAACCG 57.477 50.000 0.00 0.00 37.82 4.44
2042 2765 1.069823 AGCAGAGCATCAGATAACCGG 59.930 52.381 0.00 0.00 37.82 5.28
2043 2766 1.506493 CAGAGCATCAGATAACCGGC 58.494 55.000 0.00 0.00 37.82 6.13
2044 2767 1.123077 AGAGCATCAGATAACCGGCA 58.877 50.000 0.00 0.00 37.82 5.69
2045 2768 1.486310 AGAGCATCAGATAACCGGCAA 59.514 47.619 0.00 0.00 37.82 4.52
2046 2769 2.092968 AGAGCATCAGATAACCGGCAAA 60.093 45.455 0.00 0.00 37.82 3.68
2047 2770 2.017049 AGCATCAGATAACCGGCAAAC 58.983 47.619 0.00 0.00 0.00 2.93
2048 2771 1.268032 GCATCAGATAACCGGCAAACG 60.268 52.381 0.00 0.00 43.80 3.60
2049 2772 2.006888 CATCAGATAACCGGCAAACGT 58.993 47.619 0.00 0.00 42.24 3.99
2050 2773 1.717194 TCAGATAACCGGCAAACGTC 58.283 50.000 0.00 0.00 42.24 4.34
2051 2774 0.725117 CAGATAACCGGCAAACGTCC 59.275 55.000 0.00 0.00 42.24 4.79
2052 2775 0.738412 AGATAACCGGCAAACGTCCG 60.738 55.000 0.00 7.17 46.05 4.79
2067 2790 1.652124 CGTCCGAAACGTGTAATCTGG 59.348 52.381 0.00 0.00 46.42 3.86
2068 2791 2.669113 CGTCCGAAACGTGTAATCTGGA 60.669 50.000 0.00 0.00 46.42 3.86
2069 2792 2.665052 GTCCGAAACGTGTAATCTGGAC 59.335 50.000 0.00 4.37 38.01 4.02
2070 2793 1.652124 CCGAAACGTGTAATCTGGACG 59.348 52.381 0.00 0.00 39.03 4.79
2072 2795 2.090041 CGAAACGTGTAATCTGGACGTG 59.910 50.000 0.00 0.00 45.15 4.49
2073 2796 2.806608 AACGTGTAATCTGGACGTGT 57.193 45.000 0.00 0.00 45.15 4.49
2074 2797 2.806608 ACGTGTAATCTGGACGTGTT 57.193 45.000 0.00 0.00 44.27 3.32
2075 2798 2.400399 ACGTGTAATCTGGACGTGTTG 58.600 47.619 0.00 0.00 44.27 3.33
2076 2799 2.223876 ACGTGTAATCTGGACGTGTTGT 60.224 45.455 0.00 0.00 44.27 3.32
2077 2800 2.154963 CGTGTAATCTGGACGTGTTGTG 59.845 50.000 0.00 0.00 0.00 3.33
2078 2801 3.128349 GTGTAATCTGGACGTGTTGTGT 58.872 45.455 0.00 0.00 0.00 3.72
2079 2802 3.183775 GTGTAATCTGGACGTGTTGTGTC 59.816 47.826 0.00 0.00 35.60 3.67
2080 2803 2.613026 AATCTGGACGTGTTGTGTCA 57.387 45.000 0.00 0.00 38.10 3.58
2081 2804 2.839486 ATCTGGACGTGTTGTGTCAT 57.161 45.000 0.00 0.00 38.10 3.06
2082 2805 3.953712 ATCTGGACGTGTTGTGTCATA 57.046 42.857 0.00 0.00 38.10 2.15
2083 2806 3.953712 TCTGGACGTGTTGTGTCATAT 57.046 42.857 0.00 0.00 38.10 1.78
2084 2807 5.592104 ATCTGGACGTGTTGTGTCATATA 57.408 39.130 0.00 0.00 38.10 0.86
2085 2808 5.394224 TCTGGACGTGTTGTGTCATATAA 57.606 39.130 0.00 0.00 38.10 0.98
2086 2809 5.165676 TCTGGACGTGTTGTGTCATATAAC 58.834 41.667 0.00 0.00 38.10 1.89
2087 2810 4.884247 TGGACGTGTTGTGTCATATAACA 58.116 39.130 0.00 0.00 37.96 2.41
2095 2818 2.466846 GTGTCATATAACACGGGTCGG 58.533 52.381 0.00 0.00 40.09 4.79
2096 2819 2.101783 TGTCATATAACACGGGTCGGT 58.898 47.619 0.00 0.00 0.00 4.69
2097 2820 3.066621 GTGTCATATAACACGGGTCGGTA 59.933 47.826 0.00 0.00 40.09 4.02
2098 2821 3.890756 TGTCATATAACACGGGTCGGTAT 59.109 43.478 0.00 0.00 0.00 2.73
2099 2822 4.022935 TGTCATATAACACGGGTCGGTATC 60.023 45.833 0.00 0.00 0.00 2.24
2100 2823 3.189080 TCATATAACACGGGTCGGTATCG 59.811 47.826 0.00 0.00 37.82 2.92
2101 2824 1.679139 ATAACACGGGTCGGTATCGA 58.321 50.000 0.00 0.00 43.86 3.59
2113 2836 3.977427 TCGGTATCGATTCACTTGATGG 58.023 45.455 1.71 0.00 40.88 3.51
2114 2837 3.383505 TCGGTATCGATTCACTTGATGGT 59.616 43.478 1.71 0.00 40.88 3.55
2115 2838 4.119862 CGGTATCGATTCACTTGATGGTT 58.880 43.478 1.71 0.00 39.00 3.67
2116 2839 4.570772 CGGTATCGATTCACTTGATGGTTT 59.429 41.667 1.71 0.00 39.00 3.27
2117 2840 5.502382 CGGTATCGATTCACTTGATGGTTTG 60.502 44.000 1.71 0.00 39.00 2.93
2118 2841 4.970662 ATCGATTCACTTGATGGTTTGG 57.029 40.909 0.00 0.00 0.00 3.28
2119 2842 4.014569 TCGATTCACTTGATGGTTTGGA 57.985 40.909 0.00 0.00 0.00 3.53
2120 2843 3.751175 TCGATTCACTTGATGGTTTGGAC 59.249 43.478 0.00 0.00 0.00 4.02
2121 2844 3.424829 CGATTCACTTGATGGTTTGGACG 60.425 47.826 0.00 0.00 0.00 4.79
2122 2845 1.234821 TCACTTGATGGTTTGGACGC 58.765 50.000 0.00 0.00 0.00 5.19
2123 2846 1.202758 TCACTTGATGGTTTGGACGCT 60.203 47.619 0.00 0.00 0.00 5.07
2124 2847 1.197721 CACTTGATGGTTTGGACGCTC 59.802 52.381 0.00 0.00 0.00 5.03
2125 2848 1.072331 ACTTGATGGTTTGGACGCTCT 59.928 47.619 0.00 0.00 0.00 4.09
2126 2849 2.154462 CTTGATGGTTTGGACGCTCTT 58.846 47.619 0.00 0.00 0.00 2.85
2127 2850 2.270352 TGATGGTTTGGACGCTCTTT 57.730 45.000 0.00 0.00 0.00 2.52
2128 2851 2.582052 TGATGGTTTGGACGCTCTTTT 58.418 42.857 0.00 0.00 0.00 2.27
2129 2852 2.955660 TGATGGTTTGGACGCTCTTTTT 59.044 40.909 0.00 0.00 0.00 1.94
2148 2871 5.640189 TTTTTACTCAAACCGGACACAAA 57.360 34.783 9.46 0.00 0.00 2.83
2149 2872 4.619437 TTTACTCAAACCGGACACAAAC 57.381 40.909 9.46 0.00 0.00 2.93
2150 2873 1.385528 ACTCAAACCGGACACAAACC 58.614 50.000 9.46 0.00 0.00 3.27
2151 2874 1.340211 ACTCAAACCGGACACAAACCA 60.340 47.619 9.46 0.00 0.00 3.67
2152 2875 1.746220 CTCAAACCGGACACAAACCAA 59.254 47.619 9.46 0.00 0.00 3.67
2153 2876 1.746220 TCAAACCGGACACAAACCAAG 59.254 47.619 9.46 0.00 0.00 3.61
2154 2877 1.107945 AAACCGGACACAAACCAAGG 58.892 50.000 9.46 0.00 0.00 3.61
2155 2878 0.753848 AACCGGACACAAACCAAGGG 60.754 55.000 9.46 0.00 0.00 3.95
2156 2879 1.149627 CCGGACACAAACCAAGGGA 59.850 57.895 0.00 0.00 0.00 4.20
2157 2880 0.889186 CCGGACACAAACCAAGGGAG 60.889 60.000 0.00 0.00 0.00 4.30
2158 2881 1.515521 CGGACACAAACCAAGGGAGC 61.516 60.000 0.00 0.00 0.00 4.70
2159 2882 0.178990 GGACACAAACCAAGGGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
2160 2883 1.692411 GACACAAACCAAGGGAGCTT 58.308 50.000 0.00 0.00 0.00 3.74
2161 2884 2.031870 GACACAAACCAAGGGAGCTTT 58.968 47.619 0.00 0.00 0.00 3.51
2162 2885 1.756538 ACACAAACCAAGGGAGCTTTG 59.243 47.619 0.00 0.00 0.00 2.77
2163 2886 1.756538 CACAAACCAAGGGAGCTTTGT 59.243 47.619 0.00 1.11 37.32 2.83
2164 2887 2.031870 ACAAACCAAGGGAGCTTTGTC 58.968 47.619 0.00 0.00 32.59 3.18
2165 2888 1.001378 CAAACCAAGGGAGCTTTGTCG 60.001 52.381 0.00 0.00 0.00 4.35
2166 2889 0.537371 AACCAAGGGAGCTTTGTCGG 60.537 55.000 0.00 0.00 0.00 4.79
2167 2890 2.335712 CCAAGGGAGCTTTGTCGGC 61.336 63.158 0.00 0.00 0.00 5.54
2168 2891 2.034221 AAGGGAGCTTTGTCGGCC 59.966 61.111 0.00 0.00 0.00 6.13
2169 2892 2.529744 AAGGGAGCTTTGTCGGCCT 61.530 57.895 0.00 0.00 0.00 5.19
2170 2893 2.436824 GGGAGCTTTGTCGGCCTC 60.437 66.667 0.00 0.00 0.00 4.70
2171 2894 2.665603 GGAGCTTTGTCGGCCTCT 59.334 61.111 0.00 0.00 0.00 3.69
2172 2895 1.614241 GGGAGCTTTGTCGGCCTCTA 61.614 60.000 0.00 0.00 0.00 2.43
2173 2896 0.179097 GGAGCTTTGTCGGCCTCTAG 60.179 60.000 0.00 0.00 0.00 2.43
2174 2897 0.818296 GAGCTTTGTCGGCCTCTAGA 59.182 55.000 0.00 0.00 0.00 2.43
2175 2898 0.533032 AGCTTTGTCGGCCTCTAGAC 59.467 55.000 0.00 0.59 37.85 2.59
2176 2899 0.533032 GCTTTGTCGGCCTCTAGACT 59.467 55.000 0.00 0.00 38.16 3.24
2177 2900 1.737363 GCTTTGTCGGCCTCTAGACTG 60.737 57.143 0.00 0.00 38.16 3.51
2178 2901 0.246635 TTTGTCGGCCTCTAGACTGC 59.753 55.000 0.00 0.00 38.16 4.40
2179 2902 0.612174 TTGTCGGCCTCTAGACTGCT 60.612 55.000 0.00 0.00 38.16 4.24
2180 2903 1.315981 TGTCGGCCTCTAGACTGCTG 61.316 60.000 0.00 10.76 38.16 4.41
2181 2904 2.105930 CGGCCTCTAGACTGCTGC 59.894 66.667 0.00 0.00 0.00 5.25
2182 2905 2.503546 GGCCTCTAGACTGCTGCC 59.496 66.667 0.00 3.82 0.00 4.85
2183 2906 2.362369 GGCCTCTAGACTGCTGCCA 61.362 63.158 0.00 0.00 38.73 4.92
2184 2907 1.153469 GCCTCTAGACTGCTGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
2185 2908 1.892819 GCCTCTAGACTGCTGCCACA 61.893 60.000 0.00 0.00 0.00 4.17
2186 2909 0.108424 CCTCTAGACTGCTGCCACAC 60.108 60.000 0.00 0.00 0.00 3.82
2187 2910 0.108424 CTCTAGACTGCTGCCACACC 60.108 60.000 0.00 0.00 0.00 4.16
2188 2911 1.446792 CTAGACTGCTGCCACACCG 60.447 63.158 0.00 0.00 0.00 4.94
2189 2912 2.159819 CTAGACTGCTGCCACACCGT 62.160 60.000 0.00 0.00 0.00 4.83
2190 2913 2.434658 TAGACTGCTGCCACACCGTG 62.435 60.000 0.00 0.00 0.00 4.94
2191 2914 4.175337 ACTGCTGCCACACCGTGT 62.175 61.111 0.00 0.00 0.00 4.49
2192 2915 2.901840 CTGCTGCCACACCGTGTT 60.902 61.111 0.00 0.00 0.00 3.32
2193 2916 1.596752 CTGCTGCCACACCGTGTTA 60.597 57.895 0.00 0.00 0.00 2.41
2194 2917 1.568612 CTGCTGCCACACCGTGTTAG 61.569 60.000 0.00 2.48 0.00 2.34
2195 2918 1.301401 GCTGCCACACCGTGTTAGA 60.301 57.895 0.00 0.00 0.00 2.10
2196 2919 1.566018 GCTGCCACACCGTGTTAGAC 61.566 60.000 0.00 0.00 0.00 2.59
2197 2920 0.033504 CTGCCACACCGTGTTAGACT 59.966 55.000 0.00 0.00 0.00 3.24
2198 2921 0.249699 TGCCACACCGTGTTAGACTG 60.250 55.000 0.00 0.00 0.00 3.51
2199 2922 1.566018 GCCACACCGTGTTAGACTGC 61.566 60.000 0.00 0.00 0.00 4.40
2200 2923 0.949105 CCACACCGTGTTAGACTGCC 60.949 60.000 0.00 0.00 0.00 4.85
2201 2924 0.949105 CACACCGTGTTAGACTGCCC 60.949 60.000 0.00 0.00 0.00 5.36
2202 2925 1.119574 ACACCGTGTTAGACTGCCCT 61.120 55.000 0.00 0.00 0.00 5.19
2203 2926 0.670546 CACCGTGTTAGACTGCCCTG 60.671 60.000 0.00 0.00 0.00 4.45
2204 2927 0.830444 ACCGTGTTAGACTGCCCTGA 60.830 55.000 0.00 0.00 0.00 3.86
2205 2928 0.389948 CCGTGTTAGACTGCCCTGAC 60.390 60.000 0.00 0.00 0.00 3.51
2206 2929 0.389948 CGTGTTAGACTGCCCTGACC 60.390 60.000 0.00 0.00 0.00 4.02
2207 2930 0.036294 GTGTTAGACTGCCCTGACCC 60.036 60.000 0.00 0.00 0.00 4.46
2208 2931 0.472925 TGTTAGACTGCCCTGACCCA 60.473 55.000 0.00 0.00 0.00 4.51
2209 2932 0.036294 GTTAGACTGCCCTGACCCAC 60.036 60.000 0.00 0.00 0.00 4.61
2210 2933 0.178903 TTAGACTGCCCTGACCCACT 60.179 55.000 0.00 0.00 0.00 4.00
2211 2934 0.708209 TAGACTGCCCTGACCCACTA 59.292 55.000 0.00 0.00 0.00 2.74
2212 2935 0.905337 AGACTGCCCTGACCCACTAC 60.905 60.000 0.00 0.00 0.00 2.73
2213 2936 1.152118 ACTGCCCTGACCCACTACA 60.152 57.895 0.00 0.00 0.00 2.74
2214 2937 0.766674 ACTGCCCTGACCCACTACAA 60.767 55.000 0.00 0.00 0.00 2.41
2215 2938 0.400213 CTGCCCTGACCCACTACAAA 59.600 55.000 0.00 0.00 0.00 2.83
2216 2939 0.847373 TGCCCTGACCCACTACAAAA 59.153 50.000 0.00 0.00 0.00 2.44
2217 2940 1.244816 GCCCTGACCCACTACAAAAC 58.755 55.000 0.00 0.00 0.00 2.43
2218 2941 1.905637 CCCTGACCCACTACAAAACC 58.094 55.000 0.00 0.00 0.00 3.27
2219 2942 1.144093 CCCTGACCCACTACAAAACCA 59.856 52.381 0.00 0.00 0.00 3.67
2220 2943 2.225017 CCCTGACCCACTACAAAACCAT 60.225 50.000 0.00 0.00 0.00 3.55
2221 2944 3.081804 CCTGACCCACTACAAAACCATC 58.918 50.000 0.00 0.00 0.00 3.51
2222 2945 3.081804 CTGACCCACTACAAAACCATCC 58.918 50.000 0.00 0.00 0.00 3.51
2223 2946 2.714250 TGACCCACTACAAAACCATCCT 59.286 45.455 0.00 0.00 0.00 3.24
2224 2947 3.244770 TGACCCACTACAAAACCATCCTC 60.245 47.826 0.00 0.00 0.00 3.71
2225 2948 2.041216 ACCCACTACAAAACCATCCTCC 59.959 50.000 0.00 0.00 0.00 4.30
2226 2949 2.620627 CCCACTACAAAACCATCCTCCC 60.621 54.545 0.00 0.00 0.00 4.30
2227 2950 2.620627 CCACTACAAAACCATCCTCCCC 60.621 54.545 0.00 0.00 0.00 4.81
2228 2951 1.639108 ACTACAAAACCATCCTCCCCC 59.361 52.381 0.00 0.00 0.00 5.40
2229 2952 1.638589 CTACAAAACCATCCTCCCCCA 59.361 52.381 0.00 0.00 0.00 4.96
2230 2953 0.114364 ACAAAACCATCCTCCCCCAC 59.886 55.000 0.00 0.00 0.00 4.61
2231 2954 0.114168 CAAAACCATCCTCCCCCACA 59.886 55.000 0.00 0.00 0.00 4.17
2232 2955 1.092549 AAAACCATCCTCCCCCACAT 58.907 50.000 0.00 0.00 0.00 3.21
2233 2956 0.336048 AAACCATCCTCCCCCACATG 59.664 55.000 0.00 0.00 0.00 3.21
2234 2957 2.196776 CCATCCTCCCCCACATGC 59.803 66.667 0.00 0.00 0.00 4.06
2235 2958 2.203252 CATCCTCCCCCACATGCG 60.203 66.667 0.00 0.00 0.00 4.73
2236 2959 4.195334 ATCCTCCCCCACATGCGC 62.195 66.667 0.00 0.00 0.00 6.09
2238 2961 4.431131 CCTCCCCCACATGCGCTT 62.431 66.667 9.73 0.00 0.00 4.68
2239 2962 2.825836 CTCCCCCACATGCGCTTC 60.826 66.667 9.73 0.00 0.00 3.86
2240 2963 4.424711 TCCCCCACATGCGCTTCC 62.425 66.667 9.73 0.00 0.00 3.46
2242 2965 4.431131 CCCCACATGCGCTTCCCT 62.431 66.667 9.73 0.00 0.00 4.20
2243 2966 2.825836 CCCACATGCGCTTCCCTC 60.826 66.667 9.73 0.00 0.00 4.30
2244 2967 2.825836 CCACATGCGCTTCCCTCC 60.826 66.667 9.73 0.00 0.00 4.30
2245 2968 3.197790 CACATGCGCTTCCCTCCG 61.198 66.667 9.73 0.00 0.00 4.63
2246 2969 4.473520 ACATGCGCTTCCCTCCGG 62.474 66.667 9.73 0.00 0.00 5.14
2266 2989 2.831742 CCAGCTGCCCGCATTCAT 60.832 61.111 8.66 0.00 42.61 2.57
2267 2990 2.411701 CAGCTGCCCGCATTCATG 59.588 61.111 0.00 0.00 42.61 3.07
2279 3002 1.146637 CATTCATGCCGCTAGAGAGC 58.853 55.000 0.00 0.00 46.00 4.09
2296 3019 3.084579 CGACTGCTCCGCATTGAC 58.915 61.111 0.00 0.00 38.13 3.18
2297 3020 2.792290 CGACTGCTCCGCATTGACG 61.792 63.158 0.00 0.00 38.13 4.35
2298 3021 3.088500 GACTGCTCCGCATTGACGC 62.089 63.158 0.00 0.00 38.13 5.19
2299 3022 3.120385 CTGCTCCGCATTGACGCA 61.120 61.111 0.00 0.00 38.13 5.24
2300 3023 2.667874 TGCTCCGCATTGACGCAA 60.668 55.556 0.00 0.00 31.71 4.85
2301 3024 2.573341 CTGCTCCGCATTGACGCAAG 62.573 60.000 0.00 0.00 38.13 4.01
2313 3036 4.496898 CGCAAGTGCAGAACGAAC 57.503 55.556 3.87 0.00 42.21 3.95
2314 3037 1.437089 CGCAAGTGCAGAACGAACG 60.437 57.895 3.87 0.00 42.21 3.95
2315 3038 1.722507 GCAAGTGCAGAACGAACGC 60.723 57.895 0.00 0.00 41.59 4.84
2316 3039 1.437089 CAAGTGCAGAACGAACGCG 60.437 57.895 3.53 3.53 44.79 6.01
2317 3040 1.590525 AAGTGCAGAACGAACGCGA 60.591 52.632 15.93 0.00 41.64 5.87
2318 3041 1.818221 AAGTGCAGAACGAACGCGAC 61.818 55.000 15.93 5.44 41.64 5.19
2319 3042 3.033764 TGCAGAACGAACGCGACC 61.034 61.111 15.93 2.17 41.64 4.79
2320 3043 2.733593 GCAGAACGAACGCGACCT 60.734 61.111 15.93 0.00 41.64 3.85
2321 3044 2.717809 GCAGAACGAACGCGACCTC 61.718 63.158 15.93 5.23 41.64 3.85
2322 3045 1.081376 CAGAACGAACGCGACCTCT 60.081 57.895 15.93 4.01 41.64 3.69
2323 3046 1.066114 CAGAACGAACGCGACCTCTC 61.066 60.000 15.93 3.41 41.64 3.20
2324 3047 1.081641 GAACGAACGCGACCTCTCA 60.082 57.895 15.93 0.00 41.64 3.27
2325 3048 1.335697 GAACGAACGCGACCTCTCAC 61.336 60.000 15.93 0.00 41.64 3.51
2326 3049 1.793134 AACGAACGCGACCTCTCACT 61.793 55.000 15.93 0.00 41.64 3.41
2327 3050 1.797933 CGAACGCGACCTCTCACTG 60.798 63.158 15.93 0.00 40.82 3.66
2328 3051 2.049063 AACGCGACCTCTCACTGC 60.049 61.111 15.93 0.00 0.00 4.40
2330 3053 4.406173 CGCGACCTCTCACTGCGT 62.406 66.667 0.00 0.00 43.50 5.24
2331 3054 2.505118 GCGACCTCTCACTGCGTC 60.505 66.667 0.00 0.00 0.00 5.19
2332 3055 2.954611 CGACCTCTCACTGCGTCA 59.045 61.111 0.00 0.00 0.00 4.35
2333 3056 1.508545 CGACCTCTCACTGCGTCAT 59.491 57.895 0.00 0.00 0.00 3.06
2334 3057 0.109086 CGACCTCTCACTGCGTCATT 60.109 55.000 0.00 0.00 0.00 2.57
2335 3058 1.354040 GACCTCTCACTGCGTCATTG 58.646 55.000 0.00 0.00 0.00 2.82
2336 3059 0.969149 ACCTCTCACTGCGTCATTGA 59.031 50.000 1.37 1.37 0.00 2.57
2337 3060 1.344438 ACCTCTCACTGCGTCATTGAA 59.656 47.619 0.00 0.00 0.00 2.69
2338 3061 1.998315 CCTCTCACTGCGTCATTGAAG 59.002 52.381 0.00 0.00 0.00 3.02
2339 3062 1.392853 CTCTCACTGCGTCATTGAAGC 59.607 52.381 16.36 16.36 37.54 3.86
2340 3063 1.150827 CTCACTGCGTCATTGAAGCA 58.849 50.000 22.84 22.84 43.82 3.91
2343 3066 2.862436 TGCGTCATTGAAGCAGCG 59.138 55.556 20.98 6.25 41.52 5.18
2344 3067 2.575262 GCGTCATTGAAGCAGCGC 60.575 61.111 17.97 10.66 37.05 5.92
2345 3068 2.276244 CGTCATTGAAGCAGCGCG 60.276 61.111 0.00 0.00 0.00 6.86
2346 3069 2.575262 GTCATTGAAGCAGCGCGC 60.575 61.111 26.66 26.66 42.91 6.86
2347 3070 3.803082 TCATTGAAGCAGCGCGCC 61.803 61.111 30.33 14.19 44.04 6.53
2364 3087 4.200283 CGACCCAGAGAGCGCCTC 62.200 72.222 15.53 15.53 42.28 4.70
2365 3088 3.844090 GACCCAGAGAGCGCCTCC 61.844 72.222 18.51 3.42 42.97 4.30
2385 3108 3.396751 CTGCACGCTCAGCTGATC 58.603 61.111 18.63 12.71 33.39 2.92
2386 3109 1.447314 CTGCACGCTCAGCTGATCA 60.447 57.895 18.63 9.34 33.39 2.92
2387 3110 1.694018 CTGCACGCTCAGCTGATCAC 61.694 60.000 18.63 9.11 33.39 3.06
2388 3111 1.739196 GCACGCTCAGCTGATCACA 60.739 57.895 18.63 0.00 0.00 3.58
2389 3112 1.964290 GCACGCTCAGCTGATCACAC 61.964 60.000 18.63 3.60 0.00 3.82
2390 3113 1.079543 ACGCTCAGCTGATCACACC 60.080 57.895 18.63 1.07 0.00 4.16
2391 3114 2.163390 CGCTCAGCTGATCACACCG 61.163 63.158 18.63 9.39 0.00 4.94
2392 3115 2.459442 GCTCAGCTGATCACACCGC 61.459 63.158 18.63 11.55 0.00 5.68
2393 3116 1.079612 CTCAGCTGATCACACCGCA 60.080 57.895 18.63 0.00 0.00 5.69
2394 3117 0.461516 CTCAGCTGATCACACCGCAT 60.462 55.000 18.63 0.00 0.00 4.73
2395 3118 0.036105 TCAGCTGATCACACCGCATT 60.036 50.000 13.74 0.00 0.00 3.56
2396 3119 0.376152 CAGCTGATCACACCGCATTC 59.624 55.000 8.42 0.00 0.00 2.67
2397 3120 0.036105 AGCTGATCACACCGCATTCA 60.036 50.000 7.34 0.00 0.00 2.57
2398 3121 0.804364 GCTGATCACACCGCATTCAA 59.196 50.000 0.00 0.00 0.00 2.69
2399 3122 1.199789 GCTGATCACACCGCATTCAAA 59.800 47.619 0.00 0.00 0.00 2.69
2400 3123 2.855180 CTGATCACACCGCATTCAAAC 58.145 47.619 0.00 0.00 0.00 2.93
2401 3124 1.196581 TGATCACACCGCATTCAAACG 59.803 47.619 0.00 0.00 0.00 3.60
2406 3129 4.838959 CCGCATTCAAACGGTCAC 57.161 55.556 0.00 0.00 44.46 3.67
2407 3130 1.945522 CCGCATTCAAACGGTCACA 59.054 52.632 0.00 0.00 44.46 3.58
2408 3131 0.385473 CCGCATTCAAACGGTCACAC 60.385 55.000 0.00 0.00 44.46 3.82
2409 3132 0.306228 CGCATTCAAACGGTCACACA 59.694 50.000 0.00 0.00 0.00 3.72
2410 3133 1.753956 GCATTCAAACGGTCACACAC 58.246 50.000 0.00 0.00 0.00 3.82
2411 3134 1.333619 GCATTCAAACGGTCACACACT 59.666 47.619 0.00 0.00 0.00 3.55
2412 3135 2.854424 GCATTCAAACGGTCACACACTG 60.854 50.000 0.00 0.00 37.41 3.66
2414 3137 1.647346 TCAAACGGTCACACACTGTC 58.353 50.000 0.00 0.00 44.60 3.51
2415 3138 0.655733 CAAACGGTCACACACTGTCC 59.344 55.000 0.00 0.00 44.60 4.02
2416 3139 0.250793 AAACGGTCACACACTGTCCA 59.749 50.000 0.00 0.00 44.60 4.02
2417 3140 0.461339 AACGGTCACACACTGTCCAC 60.461 55.000 0.00 0.00 44.60 4.02
2418 3141 1.594293 CGGTCACACACTGTCCACC 60.594 63.158 0.00 0.00 30.46 4.61
2419 3142 1.830145 GGTCACACACTGTCCACCT 59.170 57.895 0.00 0.00 30.92 4.00
2420 3143 0.180406 GGTCACACACTGTCCACCTT 59.820 55.000 0.00 0.00 30.92 3.50
2421 3144 1.583054 GTCACACACTGTCCACCTTC 58.417 55.000 0.00 0.00 0.00 3.46
2422 3145 0.468226 TCACACACTGTCCACCTTCC 59.532 55.000 0.00 0.00 0.00 3.46
2423 3146 0.469917 CACACACTGTCCACCTTCCT 59.530 55.000 0.00 0.00 0.00 3.36
2424 3147 0.759346 ACACACTGTCCACCTTCCTC 59.241 55.000 0.00 0.00 0.00 3.71
2425 3148 0.035458 CACACTGTCCACCTTCCTCC 59.965 60.000 0.00 0.00 0.00 4.30
2426 3149 0.399949 ACACTGTCCACCTTCCTCCA 60.400 55.000 0.00 0.00 0.00 3.86
2427 3150 0.987294 CACTGTCCACCTTCCTCCAT 59.013 55.000 0.00 0.00 0.00 3.41
2428 3151 1.352352 CACTGTCCACCTTCCTCCATT 59.648 52.381 0.00 0.00 0.00 3.16
2429 3152 2.571653 CACTGTCCACCTTCCTCCATTA 59.428 50.000 0.00 0.00 0.00 1.90
2430 3153 3.009033 CACTGTCCACCTTCCTCCATTAA 59.991 47.826 0.00 0.00 0.00 1.40
2431 3154 3.655777 ACTGTCCACCTTCCTCCATTAAA 59.344 43.478 0.00 0.00 0.00 1.52
2432 3155 4.010349 CTGTCCACCTTCCTCCATTAAAC 58.990 47.826 0.00 0.00 0.00 2.01
2433 3156 3.245122 TGTCCACCTTCCTCCATTAAACC 60.245 47.826 0.00 0.00 0.00 3.27
2434 3157 2.310647 TCCACCTTCCTCCATTAAACCC 59.689 50.000 0.00 0.00 0.00 4.11
2435 3158 2.365582 CACCTTCCTCCATTAAACCCG 58.634 52.381 0.00 0.00 0.00 5.28
2436 3159 1.340697 ACCTTCCTCCATTAAACCCGC 60.341 52.381 0.00 0.00 0.00 6.13
2437 3160 1.014352 CTTCCTCCATTAAACCCGCG 58.986 55.000 0.00 0.00 0.00 6.46
2438 3161 0.325602 TTCCTCCATTAAACCCGCGT 59.674 50.000 4.92 0.00 0.00 6.01
2439 3162 0.391927 TCCTCCATTAAACCCGCGTG 60.392 55.000 4.92 0.00 0.00 5.34
2440 3163 0.675522 CCTCCATTAAACCCGCGTGT 60.676 55.000 4.92 0.00 0.00 4.49
2441 3164 0.446222 CTCCATTAAACCCGCGTGTG 59.554 55.000 4.92 0.00 0.00 3.82
2442 3165 0.250381 TCCATTAAACCCGCGTGTGT 60.250 50.000 4.92 0.00 0.00 3.72
2443 3166 0.109964 CCATTAAACCCGCGTGTGTG 60.110 55.000 4.92 0.00 0.00 3.82
2444 3167 0.727793 CATTAAACCCGCGTGTGTGC 60.728 55.000 4.92 0.00 0.00 4.57
2445 3168 1.858372 ATTAAACCCGCGTGTGTGCC 61.858 55.000 4.92 0.00 0.00 5.01
2451 3174 3.334751 CGCGTGTGTGCCGAGAAA 61.335 61.111 0.00 0.00 0.00 2.52
2452 3175 2.667318 CGCGTGTGTGCCGAGAAAT 61.667 57.895 0.00 0.00 0.00 2.17
2453 3176 1.132640 GCGTGTGTGCCGAGAAATC 59.867 57.895 0.00 0.00 0.00 2.17
2454 3177 1.291877 GCGTGTGTGCCGAGAAATCT 61.292 55.000 0.00 0.00 0.00 2.40
2455 3178 1.990799 CGTGTGTGCCGAGAAATCTA 58.009 50.000 0.00 0.00 0.00 1.98
2456 3179 1.654105 CGTGTGTGCCGAGAAATCTAC 59.346 52.381 0.00 0.00 0.00 2.59
2457 3180 2.671351 CGTGTGTGCCGAGAAATCTACT 60.671 50.000 0.00 0.00 0.00 2.57
2458 3181 2.924290 GTGTGTGCCGAGAAATCTACTC 59.076 50.000 0.00 0.00 0.00 2.59
2459 3182 2.826128 TGTGTGCCGAGAAATCTACTCT 59.174 45.455 0.00 0.00 32.87 3.24
2460 3183 3.182967 GTGTGCCGAGAAATCTACTCTG 58.817 50.000 0.00 0.00 32.87 3.35
2461 3184 3.089284 TGTGCCGAGAAATCTACTCTGA 58.911 45.455 0.00 0.00 32.87 3.27
2462 3185 3.701542 TGTGCCGAGAAATCTACTCTGAT 59.298 43.478 0.00 0.00 32.87 2.90
2463 3186 4.202060 TGTGCCGAGAAATCTACTCTGATC 60.202 45.833 0.00 0.00 32.87 2.92
2464 3187 3.954258 TGCCGAGAAATCTACTCTGATCA 59.046 43.478 0.00 0.00 32.87 2.92
2465 3188 4.202060 TGCCGAGAAATCTACTCTGATCAC 60.202 45.833 0.00 0.00 32.87 3.06
2466 3189 4.202060 GCCGAGAAATCTACTCTGATCACA 60.202 45.833 0.00 0.00 32.87 3.58
2467 3190 5.277825 CCGAGAAATCTACTCTGATCACAC 58.722 45.833 0.00 0.00 32.87 3.82
2468 3191 4.966970 CGAGAAATCTACTCTGATCACACG 59.033 45.833 0.00 0.00 32.87 4.49
2469 3192 5.447954 CGAGAAATCTACTCTGATCACACGT 60.448 44.000 0.00 0.00 32.87 4.49
2470 3193 5.885881 AGAAATCTACTCTGATCACACGTC 58.114 41.667 0.00 0.00 0.00 4.34
2471 3194 4.640789 AATCTACTCTGATCACACGTCC 57.359 45.455 0.00 0.00 0.00 4.79
2472 3195 2.007608 TCTACTCTGATCACACGTCCG 58.992 52.381 0.00 0.00 0.00 4.79
2473 3196 1.738350 CTACTCTGATCACACGTCCGT 59.262 52.381 0.00 0.00 0.00 4.69
2474 3197 0.959553 ACTCTGATCACACGTCCGTT 59.040 50.000 0.00 0.00 0.00 4.44
2475 3198 2.156917 ACTCTGATCACACGTCCGTTA 58.843 47.619 0.00 0.00 0.00 3.18
2476 3199 2.161808 ACTCTGATCACACGTCCGTTAG 59.838 50.000 0.00 0.00 0.00 2.34
2477 3200 1.135489 TCTGATCACACGTCCGTTAGC 60.135 52.381 0.00 0.00 0.00 3.09
2478 3201 0.455464 TGATCACACGTCCGTTAGCG 60.455 55.000 0.00 0.00 37.95 4.26
2479 3202 0.179181 GATCACACGTCCGTTAGCGA 60.179 55.000 0.00 0.00 41.33 4.93
2480 3203 0.179171 ATCACACGTCCGTTAGCGAG 60.179 55.000 0.00 0.00 41.33 5.03
2481 3204 2.126580 ACACGTCCGTTAGCGAGC 60.127 61.111 0.00 0.00 41.33 5.03
2482 3205 2.879462 CACGTCCGTTAGCGAGCC 60.879 66.667 0.00 0.00 41.33 4.70
2483 3206 4.471726 ACGTCCGTTAGCGAGCCG 62.472 66.667 0.00 2.05 41.33 5.52
2494 3217 2.202824 CGAGCCGCCCGTCATTAA 60.203 61.111 0.00 0.00 0.00 1.40
2495 3218 1.812093 CGAGCCGCCCGTCATTAAA 60.812 57.895 0.00 0.00 0.00 1.52
2496 3219 1.719709 GAGCCGCCCGTCATTAAAC 59.280 57.895 0.00 0.00 0.00 2.01
2497 3220 1.003112 AGCCGCCCGTCATTAAACA 60.003 52.632 0.00 0.00 0.00 2.83
2498 3221 1.135939 GCCGCCCGTCATTAAACAC 59.864 57.895 0.00 0.00 0.00 3.32
2499 3222 1.579084 GCCGCCCGTCATTAAACACA 61.579 55.000 0.00 0.00 0.00 3.72
2500 3223 0.875728 CCGCCCGTCATTAAACACAA 59.124 50.000 0.00 0.00 0.00 3.33
2501 3224 1.400500 CCGCCCGTCATTAAACACAAC 60.400 52.381 0.00 0.00 0.00 3.32
2502 3225 1.723384 CGCCCGTCATTAAACACAACG 60.723 52.381 0.00 0.00 0.00 4.10
2503 3226 1.264826 GCCCGTCATTAAACACAACGT 59.735 47.619 0.00 0.00 0.00 3.99
2504 3227 2.663606 GCCCGTCATTAAACACAACGTC 60.664 50.000 0.00 0.00 0.00 4.34
2505 3228 2.410517 CCCGTCATTAAACACAACGTCG 60.411 50.000 0.00 0.00 0.00 5.12
2506 3229 2.410517 CCGTCATTAAACACAACGTCGG 60.411 50.000 0.00 0.00 0.00 4.79
2507 3230 2.219216 CGTCATTAAACACAACGTCGGT 59.781 45.455 0.00 0.00 0.00 4.69
2508 3231 3.302610 CGTCATTAAACACAACGTCGGTT 60.303 43.478 0.00 0.00 36.63 4.44
2534 3257 2.418356 CCGTCCGCCCGCTATTTA 59.582 61.111 0.00 0.00 0.00 1.40
2535 3258 1.227321 CCGTCCGCCCGCTATTTAA 60.227 57.895 0.00 0.00 0.00 1.52
2536 3259 0.810823 CCGTCCGCCCGCTATTTAAA 60.811 55.000 0.00 0.00 0.00 1.52
2537 3260 0.302589 CGTCCGCCCGCTATTTAAAC 59.697 55.000 0.00 0.00 0.00 2.01
2538 3261 1.371595 GTCCGCCCGCTATTTAAACA 58.628 50.000 0.00 0.00 0.00 2.83
2539 3262 1.738908 GTCCGCCCGCTATTTAAACAA 59.261 47.619 0.00 0.00 0.00 2.83
2540 3263 2.356695 GTCCGCCCGCTATTTAAACAAT 59.643 45.455 0.00 0.00 0.00 2.71
2541 3264 2.356382 TCCGCCCGCTATTTAAACAATG 59.644 45.455 0.00 0.00 0.00 2.82
2542 3265 2.116366 CGCCCGCTATTTAAACAATGC 58.884 47.619 0.00 0.00 0.00 3.56
2543 3266 2.469826 GCCCGCTATTTAAACAATGCC 58.530 47.619 0.00 0.00 0.00 4.40
2544 3267 2.159170 GCCCGCTATTTAAACAATGCCA 60.159 45.455 0.00 0.00 0.00 4.92
2545 3268 3.705604 CCCGCTATTTAAACAATGCCAG 58.294 45.455 0.00 0.00 0.00 4.85
2546 3269 3.380004 CCCGCTATTTAAACAATGCCAGA 59.620 43.478 0.00 0.00 0.00 3.86
2547 3270 4.351192 CCGCTATTTAAACAATGCCAGAC 58.649 43.478 0.00 0.00 0.00 3.51
2548 3271 4.142491 CCGCTATTTAAACAATGCCAGACA 60.142 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.719355 TGACTTTCTTTTGCACTAGTATATGAA 57.281 29.630 0.00 0.00 0.00 2.57
3 4 9.719355 TTGACTTTCTTTTGCACTAGTATATGA 57.281 29.630 0.00 0.00 0.00 2.15
7 8 9.899226 GAATTTGACTTTCTTTTGCACTAGTAT 57.101 29.630 0.00 0.00 0.00 2.12
8 9 8.067784 CGAATTTGACTTTCTTTTGCACTAGTA 58.932 33.333 0.00 0.00 0.00 1.82
9 10 6.912591 CGAATTTGACTTTCTTTTGCACTAGT 59.087 34.615 0.00 0.00 0.00 2.57
10 11 6.912591 ACGAATTTGACTTTCTTTTGCACTAG 59.087 34.615 0.00 0.00 0.00 2.57
11 12 6.791303 ACGAATTTGACTTTCTTTTGCACTA 58.209 32.000 0.00 0.00 0.00 2.74
12 13 5.650543 ACGAATTTGACTTTCTTTTGCACT 58.349 33.333 0.00 0.00 0.00 4.40
13 14 5.949233 ACGAATTTGACTTTCTTTTGCAC 57.051 34.783 0.00 0.00 0.00 4.57
14 15 6.329496 AGAACGAATTTGACTTTCTTTTGCA 58.671 32.000 0.00 0.00 0.00 4.08
15 16 6.812481 AGAACGAATTTGACTTTCTTTTGC 57.188 33.333 0.00 0.00 0.00 3.68
41 42 9.796120 TGACGTCAAAATAATTCAGAAGTTTTT 57.204 25.926 17.62 0.00 0.00 1.94
42 43 9.965824 ATGACGTCAAAATAATTCAGAAGTTTT 57.034 25.926 24.13 0.00 0.00 2.43
43 44 9.965824 AATGACGTCAAAATAATTCAGAAGTTT 57.034 25.926 24.13 2.68 0.00 2.66
44 45 9.965824 AAATGACGTCAAAATAATTCAGAAGTT 57.034 25.926 24.13 3.09 0.00 2.66
45 46 9.398170 CAAATGACGTCAAAATAATTCAGAAGT 57.602 29.630 24.13 0.00 0.00 3.01
46 47 9.398170 ACAAATGACGTCAAAATAATTCAGAAG 57.602 29.630 24.13 2.98 0.00 2.85
94 95 9.166222 TGGTTCCTGATTGTATATACACCTTAT 57.834 33.333 15.20 6.30 35.64 1.73
95 96 8.555896 TGGTTCCTGATTGTATATACACCTTA 57.444 34.615 15.20 1.24 35.64 2.69
96 97 7.446106 TGGTTCCTGATTGTATATACACCTT 57.554 36.000 15.20 3.70 35.64 3.50
97 98 7.446106 TTGGTTCCTGATTGTATATACACCT 57.554 36.000 15.20 6.00 35.64 4.00
98 99 7.773690 ACTTTGGTTCCTGATTGTATATACACC 59.226 37.037 15.20 10.76 35.64 4.16
99 100 8.732746 ACTTTGGTTCCTGATTGTATATACAC 57.267 34.615 15.20 5.86 35.64 2.90
100 101 8.768397 AGACTTTGGTTCCTGATTGTATATACA 58.232 33.333 11.62 11.62 0.00 2.29
105 106 9.178758 GAAATAGACTTTGGTTCCTGATTGTAT 57.821 33.333 0.00 0.00 0.00 2.29
111 112 4.263771 GGGGAAATAGACTTTGGTTCCTGA 60.264 45.833 0.00 0.00 38.25 3.86
117 118 2.618045 CGCAGGGGAAATAGACTTTGGT 60.618 50.000 0.00 0.00 0.00 3.67
125 126 3.129813 GGGTTTTTACGCAGGGGAAATAG 59.870 47.826 0.00 0.00 0.00 1.73
127 128 1.897133 GGGTTTTTACGCAGGGGAAAT 59.103 47.619 0.00 0.00 0.00 2.17
129 130 0.479378 AGGGTTTTTACGCAGGGGAA 59.521 50.000 0.00 0.00 0.00 3.97
130 131 1.360185 TAGGGTTTTTACGCAGGGGA 58.640 50.000 0.00 0.00 0.00 4.81
141 142 8.914011 GGCACATTTCTAGATTATTAGGGTTTT 58.086 33.333 0.00 0.00 0.00 2.43
144 145 7.149202 TGGCACATTTCTAGATTATTAGGGT 57.851 36.000 0.00 0.00 0.00 4.34
176 177 9.515020 TGTAGATGAATTTTGTGAACAGAAAAC 57.485 29.630 11.00 2.66 36.58 2.43
182 183 9.247126 CATGTTTGTAGATGAATTTTGTGAACA 57.753 29.630 0.00 0.00 0.00 3.18
194 195 6.403527 CGAGGCAATTTCATGTTTGTAGATGA 60.404 38.462 0.00 0.00 32.68 2.92
205 206 3.313249 TGCTATCACGAGGCAATTTCATG 59.687 43.478 0.00 0.00 32.79 3.07
211 212 1.656652 GTGTGCTATCACGAGGCAAT 58.343 50.000 0.00 0.00 46.01 3.56
237 238 4.098044 CGATGGTAGTACTGAGTTGATGGT 59.902 45.833 5.39 0.00 0.00 3.55
239 240 5.037385 CACGATGGTAGTACTGAGTTGATG 58.963 45.833 5.39 0.00 0.00 3.07
254 255 0.175760 AGCTCATAACGCACGATGGT 59.824 50.000 0.00 0.00 0.00 3.55
260 261 1.450312 AGCCCAGCTCATAACGCAC 60.450 57.895 0.00 0.00 30.62 5.34
333 339 2.263741 CCAACCACACCTGCTGCTC 61.264 63.158 0.00 0.00 0.00 4.26
404 451 2.158986 CGGAGACCAGATGATTCAGCTT 60.159 50.000 0.71 0.00 0.00 3.74
450 497 1.835494 AGGTAAGCTGCTGTCTCGTA 58.165 50.000 1.35 0.00 0.00 3.43
455 502 2.758979 TGGTAGTAGGTAAGCTGCTGTC 59.241 50.000 1.35 0.00 0.00 3.51
465 512 7.966339 AATGTAGTCATGTTGGTAGTAGGTA 57.034 36.000 0.00 0.00 34.19 3.08
483 532 7.660059 CAACAAGCGAAAATGATGAAATGTAG 58.340 34.615 0.00 0.00 0.00 2.74
520 569 0.391597 GACCGACTTGGGTTGAGTGA 59.608 55.000 0.00 0.00 44.64 3.41
577 626 8.677300 GCAAGATTTACATGGAAATTGAGACTA 58.323 33.333 17.06 0.00 0.00 2.59
661 710 2.435059 GAGGCCACGCAAGACTCC 60.435 66.667 5.01 0.00 43.62 3.85
666 715 2.743928 GAGGTGAGGCCACGCAAG 60.744 66.667 15.85 0.00 44.09 4.01
667 716 3.555324 TGAGGTGAGGCCACGCAA 61.555 61.111 15.85 0.00 44.09 4.85
690 739 3.452264 TGATGATGGAAATCGTGGACTCT 59.548 43.478 0.00 0.00 0.00 3.24
700 749 4.142116 TGCGAGCAAAATGATGATGGAAAT 60.142 37.500 0.00 0.00 0.00 2.17
706 755 1.064505 CGGTGCGAGCAAAATGATGAT 59.935 47.619 0.00 0.00 0.00 2.45
755 807 2.586648 TTCCTCCTTTCTCTTTGGGC 57.413 50.000 0.00 0.00 0.00 5.36
784 869 1.477685 CGGCCCGGTAGGTATGGAAT 61.478 60.000 0.00 0.00 38.26 3.01
785 870 2.135581 CGGCCCGGTAGGTATGGAA 61.136 63.158 0.00 0.00 38.26 3.53
786 871 2.522436 CGGCCCGGTAGGTATGGA 60.522 66.667 0.00 0.00 38.26 3.41
787 872 2.522436 TCGGCCCGGTAGGTATGG 60.522 66.667 1.90 0.00 38.26 2.74
788 873 2.732658 GTCGGCCCGGTAGGTATG 59.267 66.667 1.90 0.00 38.26 2.39
810 899 1.082954 ATGTGGGGCAGGTACCTCT 59.917 57.895 12.84 0.00 0.00 3.69
841 930 2.262915 CTCGGTGCCCAGTCACTC 59.737 66.667 0.00 0.00 37.16 3.51
843 932 4.394712 CCCTCGGTGCCCAGTCAC 62.395 72.222 0.00 0.00 36.28 3.67
844 933 4.631740 TCCCTCGGTGCCCAGTCA 62.632 66.667 0.00 0.00 0.00 3.41
845 934 3.775654 CTCCCTCGGTGCCCAGTC 61.776 72.222 0.00 0.00 0.00 3.51
846 935 2.238319 TATCTCCCTCGGTGCCCAGT 62.238 60.000 0.00 0.00 0.00 4.00
847 936 1.457643 TATCTCCCTCGGTGCCCAG 60.458 63.158 0.00 0.00 0.00 4.45
848 937 1.457643 CTATCTCCCTCGGTGCCCA 60.458 63.158 0.00 0.00 0.00 5.36
850 939 0.468400 ACTCTATCTCCCTCGGTGCC 60.468 60.000 0.00 0.00 0.00 5.01
859 950 2.360801 GCTCACTGTCCACTCTATCTCC 59.639 54.545 0.00 0.00 0.00 3.71
904 995 1.909302 GGAGATTTCAGGTGAGGTGGA 59.091 52.381 0.00 0.00 0.00 4.02
918 1009 3.055094 AGTGTGGCGTATTTGAGGAGATT 60.055 43.478 0.00 0.00 0.00 2.40
969 1061 0.388659 CTAGCTAGCTGTGAGCCCTG 59.611 60.000 27.68 2.40 43.77 4.45
1018 1110 2.583520 GCACAGGAGGAGGAGCAG 59.416 66.667 0.00 0.00 0.00 4.24
1074 1175 1.671379 GAACTTGGTCAGGCCGTCC 60.671 63.158 0.00 1.56 41.21 4.79
1305 1406 0.036388 TGTTCATGAGGAGGCCGAAC 60.036 55.000 9.67 9.67 37.16 3.95
1553 1657 3.054065 AGCTAAATTAACCTCTGGCAGCT 60.054 43.478 10.34 0.00 32.23 4.24
1564 1668 9.937175 GGACTGAACATCATTAGCTAAATTAAC 57.063 33.333 10.85 0.62 0.00 2.01
1584 1688 4.282449 TCTTTTCCGTTAGTCATGGACTGA 59.718 41.667 9.06 0.00 43.30 3.41
1615 1719 7.624360 TCTGCGAAATCCATTTATTACAAGT 57.376 32.000 0.00 0.00 0.00 3.16
1676 1780 2.676839 CAGCCAGCACTCAAATCTGTAG 59.323 50.000 0.00 0.00 0.00 2.74
1678 1782 1.202855 ACAGCCAGCACTCAAATCTGT 60.203 47.619 0.00 0.00 0.00 3.41
1741 1846 8.816640 AACATAAAATCGATGCAAATTATCCC 57.183 30.769 0.00 0.00 0.00 3.85
1813 2533 1.812571 CCACCCATTGAACCTTTCTCG 59.187 52.381 0.00 0.00 0.00 4.04
1816 2536 1.000843 GTGCCACCCATTGAACCTTTC 59.999 52.381 0.00 0.00 0.00 2.62
1928 2651 3.425162 AGAGGGACAGGATGAAACAAC 57.575 47.619 0.00 0.00 39.69 3.32
1930 2653 2.553028 GCAAGAGGGACAGGATGAAACA 60.553 50.000 0.00 0.00 39.69 2.83
1932 2655 1.339055 CGCAAGAGGGACAGGATGAAA 60.339 52.381 0.00 0.00 39.22 2.69
1933 2656 0.250234 CGCAAGAGGGACAGGATGAA 59.750 55.000 0.00 0.00 39.22 2.57
1936 2659 1.613630 ACCGCAAGAGGGACAGGAT 60.614 57.895 0.00 0.00 43.02 3.24
1938 2661 2.266055 GACCGCAAGAGGGACAGG 59.734 66.667 0.00 0.00 43.02 4.00
1939 2662 2.125912 CGACCGCAAGAGGGACAG 60.126 66.667 0.00 0.00 43.02 3.51
1940 2663 4.373116 GCGACCGCAAGAGGGACA 62.373 66.667 9.73 0.00 41.49 4.02
1953 2676 4.778143 AATCCACGGCCCAGCGAC 62.778 66.667 0.00 0.00 0.00 5.19
1954 2677 4.776322 CAATCCACGGCCCAGCGA 62.776 66.667 0.00 0.00 0.00 4.93
2000 2723 0.842030 AGAGATGCCCTCAACCACCA 60.842 55.000 6.08 0.00 44.40 4.17
2001 2724 1.204146 TAGAGATGCCCTCAACCACC 58.796 55.000 6.08 0.00 44.40 4.61
2002 2725 3.274288 CTTTAGAGATGCCCTCAACCAC 58.726 50.000 6.08 0.00 44.40 4.16
2003 2726 2.356125 GCTTTAGAGATGCCCTCAACCA 60.356 50.000 6.08 0.00 44.40 3.67
2004 2727 2.293170 GCTTTAGAGATGCCCTCAACC 58.707 52.381 6.08 0.00 44.40 3.77
2005 2728 2.941720 CTGCTTTAGAGATGCCCTCAAC 59.058 50.000 6.08 0.00 44.40 3.18
2006 2729 2.840038 TCTGCTTTAGAGATGCCCTCAA 59.160 45.455 6.08 0.00 44.40 3.02
2007 2730 2.470990 TCTGCTTTAGAGATGCCCTCA 58.529 47.619 6.08 0.00 44.40 3.86
2017 2740 5.605534 GGTTATCTGATGCTCTGCTTTAGA 58.394 41.667 0.00 3.29 34.16 2.10
2018 2741 4.447054 CGGTTATCTGATGCTCTGCTTTAG 59.553 45.833 0.00 0.00 0.00 1.85
2019 2742 4.371786 CGGTTATCTGATGCTCTGCTTTA 58.628 43.478 0.00 0.00 0.00 1.85
2020 2743 3.201290 CGGTTATCTGATGCTCTGCTTT 58.799 45.455 0.00 0.00 0.00 3.51
2021 2744 2.484417 CCGGTTATCTGATGCTCTGCTT 60.484 50.000 0.00 0.00 0.00 3.91
2022 2745 1.069823 CCGGTTATCTGATGCTCTGCT 59.930 52.381 0.00 0.00 0.00 4.24
2023 2746 1.506493 CCGGTTATCTGATGCTCTGC 58.494 55.000 0.00 0.00 0.00 4.26
2024 2747 1.202568 TGCCGGTTATCTGATGCTCTG 60.203 52.381 1.90 0.00 0.00 3.35
2025 2748 1.123077 TGCCGGTTATCTGATGCTCT 58.877 50.000 1.90 0.00 0.00 4.09
2026 2749 1.953559 TTGCCGGTTATCTGATGCTC 58.046 50.000 1.90 0.00 0.00 4.26
2027 2750 2.017049 GTTTGCCGGTTATCTGATGCT 58.983 47.619 1.90 0.00 0.00 3.79
2028 2751 1.268032 CGTTTGCCGGTTATCTGATGC 60.268 52.381 1.90 0.00 0.00 3.91
2029 2752 2.006888 ACGTTTGCCGGTTATCTGATG 58.993 47.619 1.90 0.00 42.24 3.07
2030 2753 2.277084 GACGTTTGCCGGTTATCTGAT 58.723 47.619 1.90 0.00 42.24 2.90
2031 2754 1.673626 GGACGTTTGCCGGTTATCTGA 60.674 52.381 1.90 0.00 42.24 3.27
2032 2755 0.725117 GGACGTTTGCCGGTTATCTG 59.275 55.000 1.90 0.00 42.24 2.90
2033 2756 0.738412 CGGACGTTTGCCGGTTATCT 60.738 55.000 1.90 0.00 44.87 1.98
2034 2757 1.711500 CGGACGTTTGCCGGTTATC 59.289 57.895 1.90 0.00 44.87 1.75
2035 2758 3.879159 CGGACGTTTGCCGGTTAT 58.121 55.556 1.90 0.00 44.87 1.89
2048 2771 2.665052 GTCCAGATTACACGTTTCGGAC 59.335 50.000 0.00 0.00 35.34 4.79
2049 2772 2.669113 CGTCCAGATTACACGTTTCGGA 60.669 50.000 0.00 0.00 0.00 4.55
2050 2773 1.652124 CGTCCAGATTACACGTTTCGG 59.348 52.381 0.00 0.00 0.00 4.30
2051 2774 2.090041 CACGTCCAGATTACACGTTTCG 59.910 50.000 0.00 0.00 44.10 3.46
2052 2775 3.054878 ACACGTCCAGATTACACGTTTC 58.945 45.455 0.00 0.00 44.10 2.78
2053 2776 3.102052 ACACGTCCAGATTACACGTTT 57.898 42.857 0.00 0.00 44.10 3.60
2054 2777 2.798283 CAACACGTCCAGATTACACGTT 59.202 45.455 0.00 0.00 44.10 3.99
2056 2779 2.154963 CACAACACGTCCAGATTACACG 59.845 50.000 0.00 0.00 39.48 4.49
2057 2780 3.128349 ACACAACACGTCCAGATTACAC 58.872 45.455 0.00 0.00 0.00 2.90
2058 2781 3.181474 TGACACAACACGTCCAGATTACA 60.181 43.478 0.00 0.00 32.15 2.41
2059 2782 3.386486 TGACACAACACGTCCAGATTAC 58.614 45.455 0.00 0.00 32.15 1.89
2060 2783 3.737032 TGACACAACACGTCCAGATTA 57.263 42.857 0.00 0.00 32.15 1.75
2061 2784 2.613026 TGACACAACACGTCCAGATT 57.387 45.000 0.00 0.00 32.15 2.40
2062 2785 2.839486 ATGACACAACACGTCCAGAT 57.161 45.000 0.00 0.00 32.15 2.90
2063 2786 3.953712 ATATGACACAACACGTCCAGA 57.046 42.857 0.00 0.00 32.15 3.86
2064 2787 4.926832 TGTTATATGACACAACACGTCCAG 59.073 41.667 0.00 0.00 32.15 3.86
2065 2788 4.884247 TGTTATATGACACAACACGTCCA 58.116 39.130 0.00 0.00 32.15 4.02
2075 2798 2.159198 ACCGACCCGTGTTATATGACAC 60.159 50.000 18.31 18.31 44.97 3.67
2076 2799 2.101783 ACCGACCCGTGTTATATGACA 58.898 47.619 0.00 0.00 0.00 3.58
2077 2800 2.877043 ACCGACCCGTGTTATATGAC 57.123 50.000 0.00 0.00 0.00 3.06
2078 2801 3.189080 CGATACCGACCCGTGTTATATGA 59.811 47.826 0.00 0.00 38.22 2.15
2079 2802 3.189080 TCGATACCGACCCGTGTTATATG 59.811 47.826 0.00 0.00 40.30 1.78
2080 2803 3.411446 TCGATACCGACCCGTGTTATAT 58.589 45.455 0.00 0.00 40.30 0.86
2081 2804 2.844946 TCGATACCGACCCGTGTTATA 58.155 47.619 0.00 0.00 40.30 0.98
2082 2805 1.679139 TCGATACCGACCCGTGTTAT 58.321 50.000 0.00 0.00 40.30 1.89
2083 2806 3.167189 TCGATACCGACCCGTGTTA 57.833 52.632 0.00 0.00 40.30 2.41
2084 2807 4.001248 TCGATACCGACCCGTGTT 57.999 55.556 0.00 0.00 40.30 3.32
2093 2816 3.717707 ACCATCAAGTGAATCGATACCG 58.282 45.455 0.00 0.00 37.07 4.02
2094 2817 5.220854 CCAAACCATCAAGTGAATCGATACC 60.221 44.000 0.00 0.00 0.00 2.73
2095 2818 5.584649 TCCAAACCATCAAGTGAATCGATAC 59.415 40.000 0.00 0.00 0.00 2.24
2096 2819 5.584649 GTCCAAACCATCAAGTGAATCGATA 59.415 40.000 0.00 0.00 0.00 2.92
2097 2820 4.396166 GTCCAAACCATCAAGTGAATCGAT 59.604 41.667 0.00 0.00 0.00 3.59
2098 2821 3.751175 GTCCAAACCATCAAGTGAATCGA 59.249 43.478 0.00 0.00 0.00 3.59
2099 2822 3.424829 CGTCCAAACCATCAAGTGAATCG 60.425 47.826 0.00 0.00 0.00 3.34
2100 2823 3.670627 GCGTCCAAACCATCAAGTGAATC 60.671 47.826 0.00 0.00 0.00 2.52
2101 2824 2.228822 GCGTCCAAACCATCAAGTGAAT 59.771 45.455 0.00 0.00 0.00 2.57
2102 2825 1.606668 GCGTCCAAACCATCAAGTGAA 59.393 47.619 0.00 0.00 0.00 3.18
2103 2826 1.202758 AGCGTCCAAACCATCAAGTGA 60.203 47.619 0.00 0.00 0.00 3.41
2104 2827 1.197721 GAGCGTCCAAACCATCAAGTG 59.802 52.381 0.00 0.00 0.00 3.16
2105 2828 1.072331 AGAGCGTCCAAACCATCAAGT 59.928 47.619 0.00 0.00 0.00 3.16
2106 2829 1.813513 AGAGCGTCCAAACCATCAAG 58.186 50.000 0.00 0.00 0.00 3.02
2107 2830 2.270352 AAGAGCGTCCAAACCATCAA 57.730 45.000 0.00 0.00 0.00 2.57
2108 2831 2.270352 AAAGAGCGTCCAAACCATCA 57.730 45.000 0.00 0.00 0.00 3.07
2109 2832 3.643159 AAAAAGAGCGTCCAAACCATC 57.357 42.857 0.00 0.00 0.00 3.51
2126 2849 5.400703 GTTTGTGTCCGGTTTGAGTAAAAA 58.599 37.500 0.00 0.00 0.00 1.94
2127 2850 4.142425 GGTTTGTGTCCGGTTTGAGTAAAA 60.142 41.667 0.00 0.00 0.00 1.52
2128 2851 3.377798 GGTTTGTGTCCGGTTTGAGTAAA 59.622 43.478 0.00 0.00 0.00 2.01
2129 2852 2.944349 GGTTTGTGTCCGGTTTGAGTAA 59.056 45.455 0.00 0.00 0.00 2.24
2130 2853 2.093075 TGGTTTGTGTCCGGTTTGAGTA 60.093 45.455 0.00 0.00 0.00 2.59
2131 2854 1.340211 TGGTTTGTGTCCGGTTTGAGT 60.340 47.619 0.00 0.00 0.00 3.41
2132 2855 1.384525 TGGTTTGTGTCCGGTTTGAG 58.615 50.000 0.00 0.00 0.00 3.02
2133 2856 1.746220 CTTGGTTTGTGTCCGGTTTGA 59.254 47.619 0.00 0.00 0.00 2.69
2134 2857 1.202359 CCTTGGTTTGTGTCCGGTTTG 60.202 52.381 0.00 0.00 0.00 2.93
2135 2858 1.107945 CCTTGGTTTGTGTCCGGTTT 58.892 50.000 0.00 0.00 0.00 3.27
2136 2859 0.753848 CCCTTGGTTTGTGTCCGGTT 60.754 55.000 0.00 0.00 0.00 4.44
2137 2860 1.152839 CCCTTGGTTTGTGTCCGGT 60.153 57.895 0.00 0.00 0.00 5.28
2138 2861 0.889186 CTCCCTTGGTTTGTGTCCGG 60.889 60.000 0.00 0.00 0.00 5.14
2139 2862 1.515521 GCTCCCTTGGTTTGTGTCCG 61.516 60.000 0.00 0.00 0.00 4.79
2140 2863 0.178990 AGCTCCCTTGGTTTGTGTCC 60.179 55.000 0.00 0.00 0.00 4.02
2141 2864 1.692411 AAGCTCCCTTGGTTTGTGTC 58.308 50.000 0.00 0.00 0.00 3.67
2142 2865 1.756538 CAAAGCTCCCTTGGTTTGTGT 59.243 47.619 9.97 0.00 45.08 3.72
2143 2866 2.514205 CAAAGCTCCCTTGGTTTGTG 57.486 50.000 9.97 0.00 45.08 3.33
2146 2869 1.318576 CGACAAAGCTCCCTTGGTTT 58.681 50.000 1.91 0.00 35.34 3.27
2147 2870 0.537371 CCGACAAAGCTCCCTTGGTT 60.537 55.000 1.91 0.00 35.34 3.67
2148 2871 1.073199 CCGACAAAGCTCCCTTGGT 59.927 57.895 1.91 0.00 37.94 3.67
2149 2872 2.335712 GCCGACAAAGCTCCCTTGG 61.336 63.158 1.91 0.00 0.00 3.61
2150 2873 2.335712 GGCCGACAAAGCTCCCTTG 61.336 63.158 0.00 0.00 0.00 3.61
2151 2874 2.034221 GGCCGACAAAGCTCCCTT 59.966 61.111 0.00 0.00 0.00 3.95
2152 2875 2.930562 AGGCCGACAAAGCTCCCT 60.931 61.111 0.00 0.00 0.00 4.20
2153 2876 1.614241 TAGAGGCCGACAAAGCTCCC 61.614 60.000 0.00 0.00 0.00 4.30
2154 2877 0.179097 CTAGAGGCCGACAAAGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
2155 2878 0.818296 TCTAGAGGCCGACAAAGCTC 59.182 55.000 0.00 0.00 0.00 4.09
2156 2879 0.533032 GTCTAGAGGCCGACAAAGCT 59.467 55.000 0.00 0.00 0.00 3.74
2157 2880 0.533032 AGTCTAGAGGCCGACAAAGC 59.467 55.000 10.62 0.00 32.68 3.51
2158 2881 1.737363 GCAGTCTAGAGGCCGACAAAG 60.737 57.143 10.62 5.47 32.68 2.77
2159 2882 0.246635 GCAGTCTAGAGGCCGACAAA 59.753 55.000 10.62 0.00 32.68 2.83
2160 2883 0.612174 AGCAGTCTAGAGGCCGACAA 60.612 55.000 11.65 0.00 32.68 3.18
2161 2884 1.000771 AGCAGTCTAGAGGCCGACA 60.001 57.895 11.65 0.00 32.68 4.35
2162 2885 1.435515 CAGCAGTCTAGAGGCCGAC 59.564 63.158 11.65 0.00 0.00 4.79
2163 2886 2.418910 GCAGCAGTCTAGAGGCCGA 61.419 63.158 11.65 0.00 0.00 5.54
2164 2887 2.105930 GCAGCAGTCTAGAGGCCG 59.894 66.667 11.65 4.36 0.00 6.13
2165 2888 2.362369 TGGCAGCAGTCTAGAGGCC 61.362 63.158 11.65 11.13 41.70 5.19
2166 2889 1.153469 GTGGCAGCAGTCTAGAGGC 60.153 63.158 8.01 8.01 0.00 4.70
2167 2890 0.108424 GTGTGGCAGCAGTCTAGAGG 60.108 60.000 0.00 0.00 0.00 3.69
2168 2891 0.108424 GGTGTGGCAGCAGTCTAGAG 60.108 60.000 0.00 0.00 0.00 2.43
2169 2892 1.877576 CGGTGTGGCAGCAGTCTAGA 61.878 60.000 0.00 0.00 0.00 2.43
2170 2893 1.446792 CGGTGTGGCAGCAGTCTAG 60.447 63.158 0.00 0.00 0.00 2.43
2171 2894 2.207229 ACGGTGTGGCAGCAGTCTA 61.207 57.895 0.00 0.00 0.00 2.59
2172 2895 3.550431 ACGGTGTGGCAGCAGTCT 61.550 61.111 0.00 0.00 0.00 3.24
2173 2896 3.349006 CACGGTGTGGCAGCAGTC 61.349 66.667 0.00 0.00 0.00 3.51
2174 2897 2.318519 TAACACGGTGTGGCAGCAGT 62.319 55.000 15.53 0.00 37.94 4.40
2175 2898 1.568612 CTAACACGGTGTGGCAGCAG 61.569 60.000 15.53 2.24 37.94 4.24
2176 2899 1.596752 CTAACACGGTGTGGCAGCA 60.597 57.895 15.53 0.00 37.94 4.41
2177 2900 1.301401 TCTAACACGGTGTGGCAGC 60.301 57.895 15.53 0.00 37.94 5.25
2178 2901 0.033504 AGTCTAACACGGTGTGGCAG 59.966 55.000 15.53 12.21 37.94 4.85
2179 2902 0.249699 CAGTCTAACACGGTGTGGCA 60.250 55.000 15.53 2.55 37.94 4.92
2180 2903 1.566018 GCAGTCTAACACGGTGTGGC 61.566 60.000 15.53 4.75 37.94 5.01
2181 2904 0.949105 GGCAGTCTAACACGGTGTGG 60.949 60.000 15.53 10.94 37.94 4.17
2182 2905 0.949105 GGGCAGTCTAACACGGTGTG 60.949 60.000 15.53 3.25 39.75 3.82
2183 2906 1.119574 AGGGCAGTCTAACACGGTGT 61.120 55.000 8.21 8.21 0.00 4.16
2184 2907 0.670546 CAGGGCAGTCTAACACGGTG 60.671 60.000 6.58 6.58 0.00 4.94
2185 2908 0.830444 TCAGGGCAGTCTAACACGGT 60.830 55.000 0.00 0.00 0.00 4.83
2186 2909 0.389948 GTCAGGGCAGTCTAACACGG 60.390 60.000 0.00 0.00 0.00 4.94
2187 2910 0.389948 GGTCAGGGCAGTCTAACACG 60.390 60.000 0.00 0.00 0.00 4.49
2188 2911 0.036294 GGGTCAGGGCAGTCTAACAC 60.036 60.000 0.00 0.00 0.00 3.32
2189 2912 0.472925 TGGGTCAGGGCAGTCTAACA 60.473 55.000 0.00 0.00 0.00 2.41
2190 2913 0.036294 GTGGGTCAGGGCAGTCTAAC 60.036 60.000 0.00 0.00 0.00 2.34
2191 2914 0.178903 AGTGGGTCAGGGCAGTCTAA 60.179 55.000 0.00 0.00 0.00 2.10
2192 2915 0.708209 TAGTGGGTCAGGGCAGTCTA 59.292 55.000 0.00 0.00 0.00 2.59
2193 2916 0.905337 GTAGTGGGTCAGGGCAGTCT 60.905 60.000 0.00 0.00 0.00 3.24
2194 2917 1.192146 TGTAGTGGGTCAGGGCAGTC 61.192 60.000 0.00 0.00 0.00 3.51
2195 2918 0.766674 TTGTAGTGGGTCAGGGCAGT 60.767 55.000 0.00 0.00 0.00 4.40
2196 2919 0.400213 TTTGTAGTGGGTCAGGGCAG 59.600 55.000 0.00 0.00 0.00 4.85
2197 2920 0.847373 TTTTGTAGTGGGTCAGGGCA 59.153 50.000 0.00 0.00 0.00 5.36
2198 2921 1.244816 GTTTTGTAGTGGGTCAGGGC 58.755 55.000 0.00 0.00 0.00 5.19
2199 2922 1.144093 TGGTTTTGTAGTGGGTCAGGG 59.856 52.381 0.00 0.00 0.00 4.45
2200 2923 2.649531 TGGTTTTGTAGTGGGTCAGG 57.350 50.000 0.00 0.00 0.00 3.86
2201 2924 3.081804 GGATGGTTTTGTAGTGGGTCAG 58.918 50.000 0.00 0.00 0.00 3.51
2202 2925 2.714250 AGGATGGTTTTGTAGTGGGTCA 59.286 45.455 0.00 0.00 0.00 4.02
2203 2926 3.344515 GAGGATGGTTTTGTAGTGGGTC 58.655 50.000 0.00 0.00 0.00 4.46
2204 2927 2.041216 GGAGGATGGTTTTGTAGTGGGT 59.959 50.000 0.00 0.00 0.00 4.51
2205 2928 2.620627 GGGAGGATGGTTTTGTAGTGGG 60.621 54.545 0.00 0.00 0.00 4.61
2206 2929 2.620627 GGGGAGGATGGTTTTGTAGTGG 60.621 54.545 0.00 0.00 0.00 4.00
2207 2930 2.620627 GGGGGAGGATGGTTTTGTAGTG 60.621 54.545 0.00 0.00 0.00 2.74
2208 2931 1.639108 GGGGGAGGATGGTTTTGTAGT 59.361 52.381 0.00 0.00 0.00 2.73
2209 2932 1.638589 TGGGGGAGGATGGTTTTGTAG 59.361 52.381 0.00 0.00 0.00 2.74
2210 2933 1.356398 GTGGGGGAGGATGGTTTTGTA 59.644 52.381 0.00 0.00 0.00 2.41
2211 2934 0.114364 GTGGGGGAGGATGGTTTTGT 59.886 55.000 0.00 0.00 0.00 2.83
2212 2935 0.114168 TGTGGGGGAGGATGGTTTTG 59.886 55.000 0.00 0.00 0.00 2.44
2213 2936 1.092549 ATGTGGGGGAGGATGGTTTT 58.907 50.000 0.00 0.00 0.00 2.43
2214 2937 0.336048 CATGTGGGGGAGGATGGTTT 59.664 55.000 0.00 0.00 0.00 3.27
2215 2938 2.010067 CATGTGGGGGAGGATGGTT 58.990 57.895 0.00 0.00 0.00 3.67
2216 2939 2.693871 GCATGTGGGGGAGGATGGT 61.694 63.158 0.00 0.00 0.00 3.55
2217 2940 2.196776 GCATGTGGGGGAGGATGG 59.803 66.667 0.00 0.00 0.00 3.51
2218 2941 2.203252 CGCATGTGGGGGAGGATG 60.203 66.667 0.00 0.00 0.00 3.51
2219 2942 4.195334 GCGCATGTGGGGGAGGAT 62.195 66.667 8.62 0.00 0.00 3.24
2221 2944 4.431131 AAGCGCATGTGGGGGAGG 62.431 66.667 11.47 0.00 0.00 4.30
2222 2945 2.825836 GAAGCGCATGTGGGGGAG 60.826 66.667 11.47 0.00 0.00 4.30
2223 2946 4.424711 GGAAGCGCATGTGGGGGA 62.425 66.667 11.47 0.00 0.00 4.81
2225 2948 4.431131 AGGGAAGCGCATGTGGGG 62.431 66.667 11.47 0.00 0.00 4.96
2226 2949 2.825836 GAGGGAAGCGCATGTGGG 60.826 66.667 11.47 0.00 0.00 4.61
2227 2950 2.825836 GGAGGGAAGCGCATGTGG 60.826 66.667 11.47 0.00 0.00 4.17
2228 2951 3.197790 CGGAGGGAAGCGCATGTG 61.198 66.667 11.47 0.66 0.00 3.21
2259 2982 2.793300 GCTCTCTAGCGGCATGAATGC 61.793 57.143 6.73 6.73 45.32 3.56
2260 2983 1.146637 GCTCTCTAGCGGCATGAATG 58.853 55.000 1.45 0.00 39.39 2.67
2261 2984 3.603144 GCTCTCTAGCGGCATGAAT 57.397 52.632 1.45 0.00 39.39 2.57
2285 3008 1.133253 CACTTGCGTCAATGCGGAG 59.867 57.895 0.08 0.00 37.81 4.63
2286 3009 2.965147 GCACTTGCGTCAATGCGGA 61.965 57.895 0.08 0.00 37.81 5.54
2287 3010 2.502510 GCACTTGCGTCAATGCGG 60.503 61.111 0.08 0.00 37.81 5.69
2288 3011 1.794785 CTGCACTTGCGTCAATGCG 60.795 57.895 14.92 0.00 45.83 4.73
2289 3012 0.040157 TTCTGCACTTGCGTCAATGC 60.040 50.000 13.97 13.97 45.83 3.56
2290 3013 1.678360 GTTCTGCACTTGCGTCAATG 58.322 50.000 0.00 0.00 45.83 2.82
2291 3014 0.235665 CGTTCTGCACTTGCGTCAAT 59.764 50.000 0.00 0.00 45.83 2.57
2292 3015 0.808060 TCGTTCTGCACTTGCGTCAA 60.808 50.000 0.00 0.00 45.83 3.18
2293 3016 0.808060 TTCGTTCTGCACTTGCGTCA 60.808 50.000 0.00 0.00 45.83 4.35
2294 3017 0.383124 GTTCGTTCTGCACTTGCGTC 60.383 55.000 0.00 0.00 45.83 5.19
2295 3018 1.641677 GTTCGTTCTGCACTTGCGT 59.358 52.632 0.00 0.00 45.83 5.24
2296 3019 1.437089 CGTTCGTTCTGCACTTGCG 60.437 57.895 0.00 0.00 45.83 4.85
2297 3020 1.722507 GCGTTCGTTCTGCACTTGC 60.723 57.895 0.00 0.00 42.50 4.01
2298 3021 1.437089 CGCGTTCGTTCTGCACTTG 60.437 57.895 0.00 0.00 0.00 3.16
2299 3022 1.590525 TCGCGTTCGTTCTGCACTT 60.591 52.632 5.77 0.00 36.96 3.16
2300 3023 2.027024 TCGCGTTCGTTCTGCACT 59.973 55.556 5.77 0.00 36.96 4.40
2301 3024 2.167918 GTCGCGTTCGTTCTGCAC 59.832 61.111 5.77 0.00 36.96 4.57
2302 3025 3.033764 GGTCGCGTTCGTTCTGCA 61.034 61.111 5.77 0.00 36.96 4.41
2303 3026 2.717809 GAGGTCGCGTTCGTTCTGC 61.718 63.158 5.77 0.00 36.96 4.26
2304 3027 1.066114 GAGAGGTCGCGTTCGTTCTG 61.066 60.000 5.77 0.00 36.96 3.02
2305 3028 1.209640 GAGAGGTCGCGTTCGTTCT 59.790 57.895 5.77 7.57 36.96 3.01
2306 3029 1.081641 TGAGAGGTCGCGTTCGTTC 60.082 57.895 5.77 0.71 36.96 3.95
2307 3030 1.371389 GTGAGAGGTCGCGTTCGTT 60.371 57.895 5.77 0.00 36.96 3.85
2308 3031 2.254651 GTGAGAGGTCGCGTTCGT 59.745 61.111 5.77 2.21 36.96 3.85
2309 3032 1.797933 CAGTGAGAGGTCGCGTTCG 60.798 63.158 5.77 0.00 38.32 3.95
2310 3033 2.089349 GCAGTGAGAGGTCGCGTTC 61.089 63.158 5.77 2.76 38.32 3.95
2311 3034 2.049063 GCAGTGAGAGGTCGCGTT 60.049 61.111 5.77 0.00 38.32 4.84
2312 3035 4.406173 CGCAGTGAGAGGTCGCGT 62.406 66.667 5.77 0.00 40.99 6.01
2326 3049 2.862436 CGCTGCTTCAATGACGCA 59.138 55.556 13.71 13.71 34.53 5.24
2327 3050 2.575262 GCGCTGCTTCAATGACGC 60.575 61.111 4.66 4.66 39.49 5.19
2328 3051 2.276244 CGCGCTGCTTCAATGACG 60.276 61.111 5.56 0.00 0.00 4.35
2329 3052 2.575262 GCGCGCTGCTTCAATGAC 60.575 61.111 26.67 0.00 41.73 3.06
2330 3053 3.803082 GGCGCGCTGCTTCAATGA 61.803 61.111 32.29 0.00 45.43 2.57
2347 3070 4.200283 GAGGCGCTCTCTGGGTCG 62.200 72.222 7.64 0.00 39.38 4.79
2348 3071 3.844090 GGAGGCGCTCTCTGGGTC 61.844 72.222 20.47 5.09 42.10 4.46
2368 3091 1.447314 TGATCAGCTGAGCGTGCAG 60.447 57.895 25.63 2.79 38.91 4.41
2369 3092 1.739196 GTGATCAGCTGAGCGTGCA 60.739 57.895 25.63 13.35 32.18 4.57
2370 3093 1.739196 TGTGATCAGCTGAGCGTGC 60.739 57.895 25.63 18.22 32.18 5.34
2371 3094 1.357258 GGTGTGATCAGCTGAGCGTG 61.357 60.000 25.63 0.00 38.80 5.34
2372 3095 1.079543 GGTGTGATCAGCTGAGCGT 60.080 57.895 25.63 7.82 38.80 5.07
2373 3096 2.163390 CGGTGTGATCAGCTGAGCG 61.163 63.158 25.63 17.17 39.58 5.03
2374 3097 2.459442 GCGGTGTGATCAGCTGAGC 61.459 63.158 24.85 24.85 39.58 4.26
2375 3098 0.461516 ATGCGGTGTGATCAGCTGAG 60.462 55.000 22.96 7.54 39.58 3.35
2376 3099 0.036105 AATGCGGTGTGATCAGCTGA 60.036 50.000 20.79 20.79 39.58 4.26
2377 3100 0.376152 GAATGCGGTGTGATCAGCTG 59.624 55.000 7.63 7.63 39.58 4.24
2378 3101 0.036105 TGAATGCGGTGTGATCAGCT 60.036 50.000 0.00 0.00 39.58 4.24
2379 3102 0.804364 TTGAATGCGGTGTGATCAGC 59.196 50.000 0.00 0.00 38.52 4.26
2380 3103 2.725759 CGTTTGAATGCGGTGTGATCAG 60.726 50.000 0.00 0.00 0.00 2.90
2381 3104 1.196581 CGTTTGAATGCGGTGTGATCA 59.803 47.619 0.00 0.00 0.00 2.92
2382 3105 1.465689 CCGTTTGAATGCGGTGTGATC 60.466 52.381 0.00 0.00 42.73 2.92
2383 3106 0.521291 CCGTTTGAATGCGGTGTGAT 59.479 50.000 0.00 0.00 42.73 3.06
2384 3107 1.945522 CCGTTTGAATGCGGTGTGA 59.054 52.632 0.00 0.00 42.73 3.58
2385 3108 4.531708 CCGTTTGAATGCGGTGTG 57.468 55.556 0.00 0.00 42.73 3.82
2390 3113 0.306228 TGTGTGACCGTTTGAATGCG 59.694 50.000 0.00 0.00 0.00 4.73
2391 3114 1.333619 AGTGTGTGACCGTTTGAATGC 59.666 47.619 0.00 0.00 0.00 3.56
2392 3115 2.354510 ACAGTGTGTGACCGTTTGAATG 59.645 45.455 0.00 0.00 0.00 2.67
2393 3116 2.612212 GACAGTGTGTGACCGTTTGAAT 59.388 45.455 0.00 0.00 0.00 2.57
2394 3117 2.004017 GACAGTGTGTGACCGTTTGAA 58.996 47.619 0.00 0.00 0.00 2.69
2395 3118 1.647346 GACAGTGTGTGACCGTTTGA 58.353 50.000 0.00 0.00 0.00 2.69
2396 3119 0.655733 GGACAGTGTGTGACCGTTTG 59.344 55.000 0.00 0.00 31.00 2.93
2397 3120 0.250793 TGGACAGTGTGTGACCGTTT 59.749 50.000 0.00 0.00 43.36 3.60
2398 3121 0.461339 GTGGACAGTGTGTGACCGTT 60.461 55.000 0.00 0.00 43.36 4.44
2399 3122 1.143183 GTGGACAGTGTGTGACCGT 59.857 57.895 0.00 0.00 43.36 4.83
2400 3123 1.594293 GGTGGACAGTGTGTGACCG 60.594 63.158 0.00 0.00 43.36 4.79
2401 3124 0.180406 AAGGTGGACAGTGTGTGACC 59.820 55.000 0.00 3.54 41.05 4.02
2402 3125 1.583054 GAAGGTGGACAGTGTGTGAC 58.417 55.000 0.00 0.00 0.00 3.67
2403 3126 0.468226 GGAAGGTGGACAGTGTGTGA 59.532 55.000 0.00 0.00 0.00 3.58
2404 3127 0.469917 AGGAAGGTGGACAGTGTGTG 59.530 55.000 0.00 0.00 0.00 3.82
2405 3128 0.759346 GAGGAAGGTGGACAGTGTGT 59.241 55.000 0.00 0.00 0.00 3.72
2406 3129 0.035458 GGAGGAAGGTGGACAGTGTG 59.965 60.000 0.00 0.00 0.00 3.82
2407 3130 0.399949 TGGAGGAAGGTGGACAGTGT 60.400 55.000 0.00 0.00 0.00 3.55
2408 3131 0.987294 ATGGAGGAAGGTGGACAGTG 59.013 55.000 0.00 0.00 0.00 3.66
2409 3132 1.747444 AATGGAGGAAGGTGGACAGT 58.253 50.000 0.00 0.00 0.00 3.55
2410 3133 4.010349 GTTTAATGGAGGAAGGTGGACAG 58.990 47.826 0.00 0.00 0.00 3.51
2411 3134 3.245122 GGTTTAATGGAGGAAGGTGGACA 60.245 47.826 0.00 0.00 0.00 4.02
2412 3135 3.353557 GGTTTAATGGAGGAAGGTGGAC 58.646 50.000 0.00 0.00 0.00 4.02
2413 3136 2.310647 GGGTTTAATGGAGGAAGGTGGA 59.689 50.000 0.00 0.00 0.00 4.02
2414 3137 2.735151 GGGTTTAATGGAGGAAGGTGG 58.265 52.381 0.00 0.00 0.00 4.61
2415 3138 2.365582 CGGGTTTAATGGAGGAAGGTG 58.634 52.381 0.00 0.00 0.00 4.00
2416 3139 1.340697 GCGGGTTTAATGGAGGAAGGT 60.341 52.381 0.00 0.00 0.00 3.50
2417 3140 1.389555 GCGGGTTTAATGGAGGAAGG 58.610 55.000 0.00 0.00 0.00 3.46
2418 3141 1.014352 CGCGGGTTTAATGGAGGAAG 58.986 55.000 0.00 0.00 0.00 3.46
2419 3142 0.325602 ACGCGGGTTTAATGGAGGAA 59.674 50.000 12.47 0.00 0.00 3.36
2420 3143 0.391927 CACGCGGGTTTAATGGAGGA 60.392 55.000 12.47 0.00 0.00 3.71
2421 3144 0.675522 ACACGCGGGTTTAATGGAGG 60.676 55.000 9.01 0.00 0.00 4.30
2422 3145 0.446222 CACACGCGGGTTTAATGGAG 59.554 55.000 13.62 0.00 0.00 3.86
2423 3146 0.250381 ACACACGCGGGTTTAATGGA 60.250 50.000 13.62 0.00 0.00 3.41
2424 3147 0.109964 CACACACGCGGGTTTAATGG 60.110 55.000 13.62 0.71 0.00 3.16
2425 3148 0.727793 GCACACACGCGGGTTTAATG 60.728 55.000 13.62 9.54 0.00 1.90
2426 3149 1.577421 GCACACACGCGGGTTTAAT 59.423 52.632 13.62 0.00 0.00 1.40
2427 3150 2.544698 GGCACACACGCGGGTTTAA 61.545 57.895 13.62 0.00 0.00 1.52
2428 3151 2.973600 GGCACACACGCGGGTTTA 60.974 61.111 13.62 0.00 0.00 2.01
2434 3157 2.548587 GATTTCTCGGCACACACGCG 62.549 60.000 3.53 3.53 0.00 6.01
2435 3158 1.132640 GATTTCTCGGCACACACGC 59.867 57.895 0.00 0.00 0.00 5.34
2436 3159 1.654105 GTAGATTTCTCGGCACACACG 59.346 52.381 0.00 0.00 0.00 4.49
2437 3160 2.924290 GAGTAGATTTCTCGGCACACAC 59.076 50.000 0.00 0.00 0.00 3.82
2438 3161 2.826128 AGAGTAGATTTCTCGGCACACA 59.174 45.455 0.00 0.00 37.07 3.72
2439 3162 3.119459 TCAGAGTAGATTTCTCGGCACAC 60.119 47.826 0.00 0.00 37.07 3.82
2440 3163 3.089284 TCAGAGTAGATTTCTCGGCACA 58.911 45.455 0.00 0.00 37.07 4.57
2441 3164 3.784701 TCAGAGTAGATTTCTCGGCAC 57.215 47.619 0.00 0.00 37.07 5.01
2442 3165 3.954258 TGATCAGAGTAGATTTCTCGGCA 59.046 43.478 0.00 0.00 37.07 5.69
2443 3166 4.202060 TGTGATCAGAGTAGATTTCTCGGC 60.202 45.833 0.00 0.00 37.07 5.54
2444 3167 5.277825 GTGTGATCAGAGTAGATTTCTCGG 58.722 45.833 0.00 0.00 37.07 4.63
2445 3168 4.966970 CGTGTGATCAGAGTAGATTTCTCG 59.033 45.833 0.00 0.00 37.07 4.04
2446 3169 5.885881 ACGTGTGATCAGAGTAGATTTCTC 58.114 41.667 0.00 0.00 0.00 2.87
2447 3170 5.163602 GGACGTGTGATCAGAGTAGATTTCT 60.164 44.000 0.00 0.00 0.00 2.52
2448 3171 5.038033 GGACGTGTGATCAGAGTAGATTTC 58.962 45.833 0.00 0.00 0.00 2.17
2449 3172 4.438880 CGGACGTGTGATCAGAGTAGATTT 60.439 45.833 0.00 0.00 0.00 2.17
2450 3173 3.065510 CGGACGTGTGATCAGAGTAGATT 59.934 47.826 0.00 0.00 0.00 2.40
2451 3174 2.614520 CGGACGTGTGATCAGAGTAGAT 59.385 50.000 0.00 0.00 0.00 1.98
2452 3175 2.007608 CGGACGTGTGATCAGAGTAGA 58.992 52.381 0.00 0.00 0.00 2.59
2453 3176 1.738350 ACGGACGTGTGATCAGAGTAG 59.262 52.381 0.00 0.00 0.00 2.57
2454 3177 1.817357 ACGGACGTGTGATCAGAGTA 58.183 50.000 0.00 0.00 0.00 2.59
2455 3178 0.959553 AACGGACGTGTGATCAGAGT 59.040 50.000 0.00 0.00 0.00 3.24
2456 3179 2.786854 CTAACGGACGTGTGATCAGAG 58.213 52.381 0.00 0.00 0.00 3.35
2457 3180 1.135489 GCTAACGGACGTGTGATCAGA 60.135 52.381 0.00 0.00 0.00 3.27
2458 3181 1.269166 GCTAACGGACGTGTGATCAG 58.731 55.000 0.00 0.00 0.00 2.90
2459 3182 0.455464 CGCTAACGGACGTGTGATCA 60.455 55.000 0.00 0.00 34.97 2.92
2460 3183 0.179181 TCGCTAACGGACGTGTGATC 60.179 55.000 0.00 0.00 40.63 2.92
2461 3184 0.179171 CTCGCTAACGGACGTGTGAT 60.179 55.000 0.00 0.00 40.63 3.06
2462 3185 1.208358 CTCGCTAACGGACGTGTGA 59.792 57.895 0.00 0.00 40.63 3.58
2463 3186 2.434134 GCTCGCTAACGGACGTGTG 61.434 63.158 0.00 0.00 40.63 3.82
2464 3187 2.126580 GCTCGCTAACGGACGTGT 60.127 61.111 0.00 0.00 40.63 4.49
2465 3188 2.879462 GGCTCGCTAACGGACGTG 60.879 66.667 0.00 0.00 40.63 4.49
2466 3189 4.471726 CGGCTCGCTAACGGACGT 62.472 66.667 0.00 0.00 40.63 4.34
2477 3200 1.812093 TTTAATGACGGGCGGCTCG 60.812 57.895 22.48 22.48 0.00 5.03
2478 3201 1.022451 TGTTTAATGACGGGCGGCTC 61.022 55.000 9.56 0.00 0.00 4.70
2479 3202 1.003112 TGTTTAATGACGGGCGGCT 60.003 52.632 9.56 0.00 0.00 5.52
2480 3203 1.135939 GTGTTTAATGACGGGCGGC 59.864 57.895 0.00 0.00 0.00 6.53
2481 3204 0.875728 TTGTGTTTAATGACGGGCGG 59.124 50.000 0.00 0.00 0.00 6.13
2482 3205 1.723384 CGTTGTGTTTAATGACGGGCG 60.723 52.381 0.00 0.00 0.00 6.13
2483 3206 1.264826 ACGTTGTGTTTAATGACGGGC 59.735 47.619 0.00 0.00 37.99 6.13
2484 3207 2.410517 CGACGTTGTGTTTAATGACGGG 60.411 50.000 0.00 0.00 37.99 5.28
2485 3208 2.410517 CCGACGTTGTGTTTAATGACGG 60.411 50.000 1.30 7.08 44.00 4.79
2486 3209 2.219216 ACCGACGTTGTGTTTAATGACG 59.781 45.455 1.30 0.00 39.43 4.35
2487 3210 3.865224 ACCGACGTTGTGTTTAATGAC 57.135 42.857 1.30 0.00 0.00 3.06
2488 3211 3.002451 CCAACCGACGTTGTGTTTAATGA 59.998 43.478 1.30 0.00 46.71 2.57
2489 3212 3.293262 CCAACCGACGTTGTGTTTAATG 58.707 45.455 1.30 0.00 46.71 1.90
2490 3213 2.287129 GCCAACCGACGTTGTGTTTAAT 60.287 45.455 1.30 0.00 46.71 1.40
2491 3214 1.063764 GCCAACCGACGTTGTGTTTAA 59.936 47.619 1.30 0.00 46.71 1.52
2492 3215 0.656785 GCCAACCGACGTTGTGTTTA 59.343 50.000 1.30 0.00 46.71 2.01
2493 3216 1.027792 AGCCAACCGACGTTGTGTTT 61.028 50.000 1.30 0.00 46.71 2.83
2494 3217 1.433837 GAGCCAACCGACGTTGTGTT 61.434 55.000 1.30 3.14 46.71 3.32
2495 3218 1.885850 GAGCCAACCGACGTTGTGT 60.886 57.895 1.30 0.00 46.71 3.72
2496 3219 2.604174 GGAGCCAACCGACGTTGTG 61.604 63.158 1.30 0.00 46.71 3.33
2497 3220 2.280592 GGAGCCAACCGACGTTGT 60.281 61.111 1.30 0.00 46.71 3.32
2516 3239 3.795499 TAAATAGCGGGCGGACGGC 62.795 63.158 9.97 9.97 44.96 5.68
2517 3240 0.810823 TTTAAATAGCGGGCGGACGG 60.811 55.000 0.00 0.00 0.00 4.79
2518 3241 0.302589 GTTTAAATAGCGGGCGGACG 59.697 55.000 0.00 0.00 0.00 4.79
2519 3242 1.371595 TGTTTAAATAGCGGGCGGAC 58.628 50.000 0.00 0.00 0.00 4.79
2520 3243 2.110901 TTGTTTAAATAGCGGGCGGA 57.889 45.000 0.00 0.00 0.00 5.54
2521 3244 2.726633 CATTGTTTAAATAGCGGGCGG 58.273 47.619 0.00 0.00 0.00 6.13
2522 3245 2.116366 GCATTGTTTAAATAGCGGGCG 58.884 47.619 0.00 0.00 0.00 6.13
2523 3246 2.159170 TGGCATTGTTTAAATAGCGGGC 60.159 45.455 0.00 0.00 0.00 6.13
2524 3247 3.380004 TCTGGCATTGTTTAAATAGCGGG 59.620 43.478 0.00 0.00 0.00 6.13
2525 3248 4.142491 TGTCTGGCATTGTTTAAATAGCGG 60.142 41.667 0.00 0.00 0.00 5.52
2526 3249 4.980590 TGTCTGGCATTGTTTAAATAGCG 58.019 39.130 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.