Multiple sequence alignment - TraesCS4B01G095200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G095200 chr4B 100.000 3913 0 0 1776 5688 98698642 98694730 0.000000e+00 7227.0
1 TraesCS4B01G095200 chr4B 100.000 1474 0 0 1 1474 98700417 98698944 0.000000e+00 2723.0
2 TraesCS4B01G095200 chr4B 88.793 116 12 1 5245 5359 421672690 421672805 2.140000e-29 141.0
3 TraesCS4B01G095200 chr4D 91.814 3555 140 52 1776 5242 67117632 67114141 0.000000e+00 4813.0
4 TraesCS4B01G095200 chr4D 91.168 1370 42 23 166 1474 67118997 67117646 0.000000e+00 1786.0
5 TraesCS4B01G095200 chr4D 90.541 296 15 4 5371 5657 67114113 67113822 4.160000e-101 379.0
6 TraesCS4B01G095200 chr4D 91.071 112 9 1 5249 5359 497184525 497184414 3.550000e-32 150.0
7 TraesCS4B01G095200 chr4D 80.303 132 22 2 5 133 85117936 85118066 4.690000e-16 97.1
8 TraesCS4B01G095200 chr4A 86.986 2505 151 77 2903 5254 515780995 515778513 0.000000e+00 2658.0
9 TraesCS4B01G095200 chr4A 91.429 1155 66 16 1776 2910 515782238 515781097 0.000000e+00 1554.0
10 TraesCS4B01G095200 chr4A 88.034 1312 74 33 226 1474 515783543 515782252 0.000000e+00 1476.0
11 TraesCS4B01G095200 chr4A 86.869 198 18 2 5362 5559 515778507 515778318 1.240000e-51 215.0
12 TraesCS4B01G095200 chr6A 91.453 117 9 1 5244 5359 64543184 64543068 5.900000e-35 159.0
13 TraesCS4B01G095200 chr7A 90.517 116 9 2 5249 5362 176989585 176989470 9.870000e-33 152.0
14 TraesCS4B01G095200 chr7A 89.655 116 10 2 5250 5363 105722539 105722654 4.590000e-31 147.0
15 TraesCS4B01G095200 chr3A 90.517 116 9 2 5245 5359 507272632 507272518 9.870000e-33 152.0
16 TraesCS4B01G095200 chr3A 78.226 124 27 0 10 133 12925533 12925410 4.720000e-11 80.5
17 TraesCS4B01G095200 chr6B 89.655 116 11 1 5245 5359 640393825 640393940 4.590000e-31 147.0
18 TraesCS4B01G095200 chr5A 87.402 127 13 3 5243 5367 46370641 46370766 5.940000e-30 143.0
19 TraesCS4B01G095200 chr3D 88.793 116 12 1 5245 5359 454365873 454365988 2.140000e-29 141.0
20 TraesCS4B01G095200 chr7D 84.921 126 18 1 5 130 22924488 22924612 5.980000e-25 126.0
21 TraesCS4B01G095200 chr2B 81.890 127 20 3 5 130 152846404 152846528 2.800000e-18 104.0
22 TraesCS4B01G095200 chr3B 80.292 137 20 4 9 144 740037710 740037580 4.690000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G095200 chr4B 98694730 98700417 5687 True 4975.00 7227 100.000000 1 5688 2 chr4B.!!$R1 5687
1 TraesCS4B01G095200 chr4D 67113822 67118997 5175 True 2326.00 4813 91.174333 166 5657 3 chr4D.!!$R2 5491
2 TraesCS4B01G095200 chr4A 515778318 515783543 5225 True 1475.75 2658 88.329500 226 5559 4 chr4A.!!$R1 5333

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.179037 AGATCCATCGTGCCACCATG 60.179 55.0 0.00 0.0 0.0 3.66 F
599 626 0.179150 CTCTCTTCTCTTCCACGGCG 60.179 60.0 4.80 4.8 0.0 6.46 F
2286 2390 0.249489 GGAGCTGCATGTACTACGGG 60.249 60.0 0.00 0.0 0.0 5.28 F
3005 3269 0.032952 TTGACCTAACGCGCTTGTCT 59.967 50.0 5.73 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1197 1297 0.725117 CCGCCGTCATAAACAAGTCC 59.275 55.0 0.00 0.00 0.00 3.85 R
2469 2585 0.390124 TGGGTTGTCTAACGCTTCGT 59.610 50.0 8.36 0.00 46.50 3.85 R
3641 4001 0.238289 GTTGGCGATAATGGGCATCG 59.762 55.0 1.00 1.00 46.25 3.84 R
4730 5129 1.629043 TATATCCTGCGACCTGGTCC 58.371 55.0 20.68 13.68 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.821935 AAAAACTGAGCCCTCCCG 57.178 55.556 0.00 0.00 0.00 5.14
26 27 1.603739 AAAAACTGAGCCCTCCCGC 60.604 57.895 0.00 0.00 0.00 6.13
27 28 3.569200 AAAACTGAGCCCTCCCGCC 62.569 63.158 0.00 0.00 0.00 6.13
48 49 0.313043 GCAATGGCCAAGATCCATCG 59.687 55.000 10.96 0.00 43.13 3.84
49 50 1.683943 CAATGGCCAAGATCCATCGT 58.316 50.000 10.96 0.00 43.13 3.73
50 51 1.335810 CAATGGCCAAGATCCATCGTG 59.664 52.381 10.96 0.00 43.13 4.35
51 52 0.820891 ATGGCCAAGATCCATCGTGC 60.821 55.000 10.96 0.00 40.08 5.34
52 53 2.189499 GGCCAAGATCCATCGTGCC 61.189 63.158 0.00 0.00 35.40 5.01
53 54 1.451927 GCCAAGATCCATCGTGCCA 60.452 57.895 0.00 0.00 35.40 4.92
54 55 1.718757 GCCAAGATCCATCGTGCCAC 61.719 60.000 0.00 0.00 35.40 5.01
55 56 1.097547 CCAAGATCCATCGTGCCACC 61.098 60.000 0.00 0.00 35.40 4.61
56 57 0.392863 CAAGATCCATCGTGCCACCA 60.393 55.000 0.00 0.00 30.13 4.17
57 58 0.548031 AAGATCCATCGTGCCACCAT 59.452 50.000 0.00 0.00 0.00 3.55
58 59 0.179037 AGATCCATCGTGCCACCATG 60.179 55.000 0.00 0.00 0.00 3.66
59 60 1.152902 ATCCATCGTGCCACCATGG 60.153 57.895 14.58 14.58 41.55 3.66
60 61 2.629424 ATCCATCGTGCCACCATGGG 62.629 60.000 19.52 4.89 38.19 4.00
78 79 3.160872 GCCTAAGGCCACAGAAGAC 57.839 57.895 5.01 0.00 44.06 3.01
79 80 0.741221 GCCTAAGGCCACAGAAGACG 60.741 60.000 5.01 0.00 44.06 4.18
80 81 0.895530 CCTAAGGCCACAGAAGACGA 59.104 55.000 5.01 0.00 0.00 4.20
81 82 1.134965 CCTAAGGCCACAGAAGACGAG 60.135 57.143 5.01 0.00 0.00 4.18
82 83 0.895530 TAAGGCCACAGAAGACGAGG 59.104 55.000 5.01 0.00 0.00 4.63
83 84 2.435059 GGCCACAGAAGACGAGGC 60.435 66.667 0.00 0.00 44.48 4.70
84 85 2.811317 GCCACAGAAGACGAGGCG 60.811 66.667 0.00 0.00 35.42 5.52
85 86 2.125912 CCACAGAAGACGAGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
86 87 2.636412 CCACAGAAGACGAGGCGGA 61.636 63.158 0.00 0.00 0.00 5.54
87 88 1.444553 CACAGAAGACGAGGCGGAC 60.445 63.158 0.00 0.00 0.00 4.79
88 89 2.182030 CAGAAGACGAGGCGGACC 59.818 66.667 0.00 0.00 0.00 4.46
89 90 3.441290 AGAAGACGAGGCGGACCG 61.441 66.667 10.29 10.29 42.76 4.79
90 91 3.437795 GAAGACGAGGCGGACCGA 61.438 66.667 20.50 0.00 42.76 4.69
91 92 3.680338 GAAGACGAGGCGGACCGAC 62.680 68.421 20.50 17.10 42.76 4.79
113 114 3.005539 GCCCTGACAGGAGGCAGA 61.006 66.667 23.77 0.00 46.34 4.26
114 115 3.028921 GCCCTGACAGGAGGCAGAG 62.029 68.421 23.77 5.18 46.34 3.35
115 116 2.365586 CCCTGACAGGAGGCAGAGG 61.366 68.421 23.77 0.00 37.67 3.69
116 117 1.305633 CCTGACAGGAGGCAGAGGA 60.306 63.158 17.22 0.00 37.67 3.71
117 118 0.906756 CCTGACAGGAGGCAGAGGAA 60.907 60.000 17.22 0.00 37.67 3.36
118 119 0.248843 CTGACAGGAGGCAGAGGAAC 59.751 60.000 0.00 0.00 34.06 3.62
119 120 1.194781 TGACAGGAGGCAGAGGAACC 61.195 60.000 0.00 0.00 0.00 3.62
120 121 1.904990 GACAGGAGGCAGAGGAACCC 61.905 65.000 0.00 0.00 0.00 4.11
121 122 1.614824 CAGGAGGCAGAGGAACCCT 60.615 63.158 0.00 0.00 36.03 4.34
122 123 0.325671 CAGGAGGCAGAGGAACCCTA 60.326 60.000 0.00 0.00 31.76 3.53
123 124 0.417841 AGGAGGCAGAGGAACCCTAA 59.582 55.000 0.00 0.00 31.76 2.69
124 125 1.203440 AGGAGGCAGAGGAACCCTAAA 60.203 52.381 0.00 0.00 31.76 1.85
125 126 1.065345 GGAGGCAGAGGAACCCTAAAC 60.065 57.143 0.00 0.00 31.76 2.01
126 127 1.909986 GAGGCAGAGGAACCCTAAACT 59.090 52.381 0.00 0.00 31.76 2.66
127 128 2.306219 GAGGCAGAGGAACCCTAAACTT 59.694 50.000 0.00 0.00 31.76 2.66
128 129 2.716969 AGGCAGAGGAACCCTAAACTTT 59.283 45.455 0.00 0.00 31.76 2.66
129 130 3.140332 AGGCAGAGGAACCCTAAACTTTT 59.860 43.478 0.00 0.00 31.76 2.27
130 131 3.506455 GGCAGAGGAACCCTAAACTTTTC 59.494 47.826 0.00 0.00 31.76 2.29
131 132 4.399219 GCAGAGGAACCCTAAACTTTTCT 58.601 43.478 0.00 0.00 31.76 2.52
132 133 4.827835 GCAGAGGAACCCTAAACTTTTCTT 59.172 41.667 0.00 0.00 31.76 2.52
133 134 5.278512 GCAGAGGAACCCTAAACTTTTCTTG 60.279 44.000 0.00 0.00 31.76 3.02
134 135 5.241728 CAGAGGAACCCTAAACTTTTCTTGG 59.758 44.000 0.00 0.00 31.76 3.61
135 136 5.133830 AGAGGAACCCTAAACTTTTCTTGGA 59.866 40.000 0.00 0.00 31.76 3.53
136 137 5.386060 AGGAACCCTAAACTTTTCTTGGAG 58.614 41.667 0.00 0.00 28.47 3.86
137 138 5.133830 AGGAACCCTAAACTTTTCTTGGAGA 59.866 40.000 0.00 0.00 28.47 3.71
138 139 6.010850 GGAACCCTAAACTTTTCTTGGAGAT 58.989 40.000 0.00 0.00 0.00 2.75
139 140 6.071896 GGAACCCTAAACTTTTCTTGGAGATG 60.072 42.308 0.00 0.00 0.00 2.90
140 141 6.200878 ACCCTAAACTTTTCTTGGAGATGA 57.799 37.500 0.00 0.00 0.00 2.92
141 142 6.241645 ACCCTAAACTTTTCTTGGAGATGAG 58.758 40.000 0.00 0.00 0.00 2.90
142 143 5.649831 CCCTAAACTTTTCTTGGAGATGAGG 59.350 44.000 0.00 0.00 0.00 3.86
143 144 6.241645 CCTAAACTTTTCTTGGAGATGAGGT 58.758 40.000 0.00 0.00 0.00 3.85
144 145 6.150140 CCTAAACTTTTCTTGGAGATGAGGTG 59.850 42.308 0.00 0.00 0.00 4.00
145 146 4.713792 ACTTTTCTTGGAGATGAGGTGT 57.286 40.909 0.00 0.00 0.00 4.16
146 147 4.646572 ACTTTTCTTGGAGATGAGGTGTC 58.353 43.478 0.00 0.00 0.00 3.67
147 148 3.703001 TTTCTTGGAGATGAGGTGTCC 57.297 47.619 0.00 0.00 40.66 4.02
148 149 2.630889 TCTTGGAGATGAGGTGTCCT 57.369 50.000 0.00 0.00 40.87 3.85
149 150 2.907892 TCTTGGAGATGAGGTGTCCTT 58.092 47.619 0.00 0.00 40.87 3.36
150 151 2.834549 TCTTGGAGATGAGGTGTCCTTC 59.165 50.000 0.00 0.00 40.87 3.46
151 152 2.630889 TGGAGATGAGGTGTCCTTCT 57.369 50.000 0.00 0.00 40.87 2.85
152 153 2.907892 TGGAGATGAGGTGTCCTTCTT 58.092 47.619 0.00 0.00 40.87 2.52
153 154 4.061131 TGGAGATGAGGTGTCCTTCTTA 57.939 45.455 0.00 0.00 40.87 2.10
154 155 4.425772 TGGAGATGAGGTGTCCTTCTTAA 58.574 43.478 0.00 0.00 40.87 1.85
155 156 5.032846 TGGAGATGAGGTGTCCTTCTTAAT 58.967 41.667 0.00 0.00 40.87 1.40
156 157 5.488919 TGGAGATGAGGTGTCCTTCTTAATT 59.511 40.000 0.00 0.00 40.87 1.40
157 158 5.819901 GGAGATGAGGTGTCCTTCTTAATTG 59.180 44.000 0.00 0.00 37.30 2.32
158 159 5.189180 AGATGAGGTGTCCTTCTTAATTGC 58.811 41.667 0.00 0.00 31.76 3.56
159 160 4.640771 TGAGGTGTCCTTCTTAATTGCT 57.359 40.909 0.00 0.00 31.76 3.91
160 161 5.755409 TGAGGTGTCCTTCTTAATTGCTA 57.245 39.130 0.00 0.00 31.76 3.49
161 162 5.734720 TGAGGTGTCCTTCTTAATTGCTAG 58.265 41.667 0.00 0.00 31.76 3.42
162 163 5.248477 TGAGGTGTCCTTCTTAATTGCTAGT 59.752 40.000 0.00 0.00 31.76 2.57
163 164 5.491982 AGGTGTCCTTCTTAATTGCTAGTG 58.508 41.667 0.00 0.00 0.00 2.74
164 165 4.095036 GGTGTCCTTCTTAATTGCTAGTGC 59.905 45.833 0.00 0.00 40.20 4.40
169 170 7.829211 TGTCCTTCTTAATTGCTAGTGCTAAAT 59.171 33.333 0.00 0.00 40.48 1.40
184 185 7.693969 AGTGCTAAATATGCAACTTCTCTTT 57.306 32.000 0.00 0.00 42.41 2.52
186 187 7.391554 AGTGCTAAATATGCAACTTCTCTTTCA 59.608 33.333 0.00 0.00 42.41 2.69
187 188 7.695618 GTGCTAAATATGCAACTTCTCTTTCAG 59.304 37.037 0.00 0.00 42.41 3.02
188 189 6.690528 GCTAAATATGCAACTTCTCTTTCAGC 59.309 38.462 0.00 0.00 0.00 4.26
192 193 4.717233 TGCAACTTCTCTTTCAGCAAAA 57.283 36.364 0.00 0.00 0.00 2.44
210 213 4.265073 CAAAAGATAACCCAGGTCCTCTG 58.735 47.826 0.00 0.00 43.00 3.35
295 304 4.092821 TGAAAAATTACGCTCGAGGATGTG 59.907 41.667 15.58 0.00 0.00 3.21
486 501 4.329545 ACCACCTCGCGCACCAAT 62.330 61.111 8.75 0.00 0.00 3.16
487 502 3.803082 CCACCTCGCGCACCAATG 61.803 66.667 8.75 0.00 0.00 2.82
488 503 3.803082 CACCTCGCGCACCAATGG 61.803 66.667 8.75 0.00 0.00 3.16
489 504 4.015406 ACCTCGCGCACCAATGGA 62.015 61.111 6.16 0.00 0.00 3.41
490 505 2.514592 CCTCGCGCACCAATGGAT 60.515 61.111 6.16 0.00 0.00 3.41
491 506 2.537560 CCTCGCGCACCAATGGATC 61.538 63.158 6.16 0.00 0.00 3.36
492 507 2.874694 CTCGCGCACCAATGGATCG 61.875 63.158 6.16 9.90 0.00 3.69
493 508 4.596180 CGCGCACCAATGGATCGC 62.596 66.667 24.15 24.15 40.83 4.58
494 509 4.256090 GCGCACCAATGGATCGCC 62.256 66.667 23.78 11.69 39.43 5.54
495 510 3.585990 CGCACCAATGGATCGCCC 61.586 66.667 6.16 0.00 0.00 6.13
496 511 3.219198 GCACCAATGGATCGCCCC 61.219 66.667 6.16 0.00 0.00 5.80
497 512 2.901840 CACCAATGGATCGCCCCG 60.902 66.667 6.16 0.00 0.00 5.73
498 513 4.875713 ACCAATGGATCGCCCCGC 62.876 66.667 6.16 0.00 0.00 6.13
519 534 4.880537 CCATCCTCTCGCGCGCTT 62.881 66.667 30.48 2.28 0.00 4.68
523 545 2.564553 ATCCTCTCGCGCGCTTTTCT 62.565 55.000 30.48 5.32 0.00 2.52
551 573 0.671163 TCGATTCCCCGAACCAAACG 60.671 55.000 0.00 0.00 35.42 3.60
552 574 0.952010 CGATTCCCCGAACCAAACGT 60.952 55.000 0.00 0.00 0.00 3.99
594 621 2.175202 GCTCACCTCTCTTCTCTTCCA 58.825 52.381 0.00 0.00 0.00 3.53
595 622 2.094234 GCTCACCTCTCTTCTCTTCCAC 60.094 54.545 0.00 0.00 0.00 4.02
596 623 2.163412 CTCACCTCTCTTCTCTTCCACG 59.837 54.545 0.00 0.00 0.00 4.94
597 624 1.203523 CACCTCTCTTCTCTTCCACGG 59.796 57.143 0.00 0.00 0.00 4.94
599 626 0.179150 CTCTCTTCTCTTCCACGGCG 60.179 60.000 4.80 4.80 0.00 6.46
600 627 0.608308 TCTCTTCTCTTCCACGGCGA 60.608 55.000 16.62 0.00 0.00 5.54
827 870 4.186077 TCCCCTTCGATCTTCTCATACT 57.814 45.455 0.00 0.00 0.00 2.12
857 905 2.286121 ACCACCATCCCATCCCGT 60.286 61.111 0.00 0.00 0.00 5.28
896 953 3.374402 ACCACCACTCTCGCTCGG 61.374 66.667 0.00 0.00 0.00 4.63
987 1054 3.598246 GTGTCGAGCAAAATTAAGTTCGC 59.402 43.478 10.17 0.00 38.18 4.70
1192 1292 1.795889 GCGCACGGTTTGAACTTTGAA 60.796 47.619 0.30 0.00 0.00 2.69
1197 1297 1.969256 CGGTTTGAACTTTGAATCGCG 59.031 47.619 0.00 0.00 0.00 5.87
1373 1477 2.650116 GGCGGCTGTTGAGGAGAGA 61.650 63.158 0.00 0.00 0.00 3.10
1878 1982 4.082523 ACATCCTCCACCCGCACG 62.083 66.667 0.00 0.00 0.00 5.34
1879 1983 4.838152 CATCCTCCACCCGCACGG 62.838 72.222 1.02 1.02 37.81 4.94
2118 2222 4.135153 CTGGTCCTGGACGAGCCG 62.135 72.222 23.16 4.27 40.66 5.52
2281 2385 1.680522 CGAGGGGAGCTGCATGTACT 61.681 60.000 7.79 0.00 0.00 2.73
2286 2390 0.249489 GGAGCTGCATGTACTACGGG 60.249 60.000 0.00 0.00 0.00 5.28
2292 2396 2.841044 ATGTACTACGGGCCCGGG 60.841 66.667 44.99 36.39 44.69 5.73
2322 2426 1.139095 GGACTACTTCGCCTCCGTG 59.861 63.158 0.00 0.00 35.54 4.94
2442 2558 7.224297 ACTTCTTTCCATGAAACTAGCTAACA 58.776 34.615 0.00 0.00 0.00 2.41
2476 2592 5.957910 AGAAATCTAGATTCAACGAAGCG 57.042 39.130 18.19 0.00 32.82 4.68
2477 2593 5.411781 AGAAATCTAGATTCAACGAAGCGT 58.588 37.500 18.19 0.00 43.97 5.07
2487 2603 3.206090 ACGAAGCGTTAGACAACCC 57.794 52.632 0.00 0.00 36.35 4.11
2490 2606 1.459592 CGAAGCGTTAGACAACCCAAG 59.540 52.381 0.00 0.00 0.00 3.61
2491 2607 2.762745 GAAGCGTTAGACAACCCAAGA 58.237 47.619 0.00 0.00 0.00 3.02
2496 2612 2.299297 CGTTAGACAACCCAAGAGAGGT 59.701 50.000 0.00 0.00 40.14 3.85
2502 2618 4.658901 AGACAACCCAAGAGAGGTAGAAAA 59.341 41.667 0.00 0.00 36.27 2.29
2548 2665 6.324819 AGTAGCGTACGTACATGTTTATGTT 58.675 36.000 24.50 6.99 45.01 2.71
2624 2741 1.265905 GACGAGCAAAACAAATCCGGT 59.734 47.619 0.00 0.00 0.00 5.28
2680 2801 1.795286 GAAGAGAGAAGGTGCACAACG 59.205 52.381 20.43 0.00 0.00 4.10
2697 2818 2.234300 ACGAAAAAGAGCGGTGAGAA 57.766 45.000 0.00 0.00 0.00 2.87
2706 2827 1.889573 GCGGTGAGAATGCCCTAGC 60.890 63.158 0.00 0.00 40.48 3.42
2720 2841 3.651904 TGCCCTAGCTAGCTAGTACTAGT 59.348 47.826 37.50 17.34 43.22 2.57
2842 2965 3.074985 AGTGGGGCTGCACATCATAATAT 59.925 43.478 3.46 0.00 0.00 1.28
2867 2990 0.515127 CGATGTCGATAGCTCTCGCT 59.485 55.000 16.03 4.03 45.61 4.93
2913 3152 0.945813 CTACTCTACTTCTCCGGCGG 59.054 60.000 22.51 22.51 0.00 6.13
2994 3258 3.773418 TTCACGGGTGATTTGACCTAA 57.227 42.857 1.83 0.00 39.64 2.69
2995 3259 3.048337 TCACGGGTGATTTGACCTAAC 57.952 47.619 0.00 0.00 36.14 2.34
2996 3260 1.730064 CACGGGTGATTTGACCTAACG 59.270 52.381 0.00 0.00 36.14 3.18
3001 3265 1.463444 GTGATTTGACCTAACGCGCTT 59.537 47.619 5.73 2.14 0.00 4.68
3002 3266 1.463056 TGATTTGACCTAACGCGCTTG 59.537 47.619 5.73 0.00 0.00 4.01
3003 3267 1.463444 GATTTGACCTAACGCGCTTGT 59.537 47.619 5.73 0.00 0.00 3.16
3004 3268 0.863144 TTTGACCTAACGCGCTTGTC 59.137 50.000 5.73 8.91 0.00 3.18
3005 3269 0.032952 TTGACCTAACGCGCTTGTCT 59.967 50.000 5.73 0.00 0.00 3.41
3006 3270 0.032952 TGACCTAACGCGCTTGTCTT 59.967 50.000 5.73 0.00 0.00 3.01
3009 3273 2.733026 GACCTAACGCGCTTGTCTTTTA 59.267 45.455 5.73 0.00 0.00 1.52
3047 3311 4.082571 ACAAGATCAAGAAAATCCCAAGCG 60.083 41.667 0.00 0.00 0.00 4.68
3109 3375 2.615747 GCTCCTCCCAACCTCACTTTAC 60.616 54.545 0.00 0.00 0.00 2.01
3122 3388 4.051922 CTCACTTTACACACAGACTGGAC 58.948 47.826 7.51 0.00 0.00 4.02
3123 3389 3.704566 TCACTTTACACACAGACTGGACT 59.295 43.478 7.51 0.00 0.00 3.85
3124 3390 3.804325 CACTTTACACACAGACTGGACTG 59.196 47.826 7.51 0.00 42.78 3.51
3125 3391 3.181465 ACTTTACACACAGACTGGACTGG 60.181 47.826 7.51 0.00 41.59 4.00
3126 3392 2.375014 TACACACAGACTGGACTGGA 57.625 50.000 7.51 0.00 41.59 3.86
3240 3527 2.412847 GCTTTCAGTTGGATCCGTTTCG 60.413 50.000 7.39 0.00 0.00 3.46
3294 3581 1.741770 GTTAGCACCAGCCACCTCG 60.742 63.158 0.00 0.00 43.56 4.63
3351 3669 1.836383 GTCGATATTGTTCCGAGCGT 58.164 50.000 0.00 0.00 32.65 5.07
3359 3677 1.007734 GTTCCGAGCGTCTGTGTCA 60.008 57.895 0.00 0.00 0.00 3.58
3380 3698 4.277672 TCACTACAGTTGGAGATATACCGC 59.722 45.833 0.00 0.00 0.00 5.68
3381 3699 3.573110 ACTACAGTTGGAGATATACCGCC 59.427 47.826 0.00 0.00 0.00 6.13
3457 3786 8.504005 CGAGATAGAAGAAAGAGATAGGAGAAC 58.496 40.741 0.00 0.00 0.00 3.01
3463 3792 4.573201 AGAAAGAGATAGGAGAACGAGTCG 59.427 45.833 11.85 11.85 0.00 4.18
3520 3864 0.813610 CGAACCTGTTGAGTGCACCA 60.814 55.000 14.63 8.65 0.00 4.17
3537 3881 1.025113 CCAGCACATCACCAGAGCAG 61.025 60.000 0.00 0.00 0.00 4.24
3583 3943 0.959553 TGATCCGTCCGCTAGATTCC 59.040 55.000 0.00 0.00 0.00 3.01
3584 3944 0.109689 GATCCGTCCGCTAGATTCCG 60.110 60.000 0.00 0.00 0.00 4.30
3585 3945 2.143594 ATCCGTCCGCTAGATTCCGC 62.144 60.000 0.00 0.00 0.00 5.54
3641 4001 3.482786 GTTGTCGCTGTTTGATGATCAC 58.517 45.455 0.00 0.00 0.00 3.06
3686 4046 4.056050 TCTTTTCTAGACCACGTGAAAGC 58.944 43.478 19.30 2.88 31.37 3.51
3718 4083 3.266636 TGACTGTTGTTCGATGTGTGTT 58.733 40.909 0.00 0.00 0.00 3.32
3859 4224 3.712881 GGCGTGCACGTGGAGAAC 61.713 66.667 36.80 19.96 42.22 3.01
4285 4656 1.000283 CTCATCGTCTACCTCATGGCC 60.000 57.143 0.00 0.00 36.63 5.36
4288 4659 2.109181 GTCTACCTCATGGCCGGC 59.891 66.667 21.18 21.18 36.63 6.13
4543 4914 3.120385 CTGCTCATCGCCGTGCAA 61.120 61.111 0.00 0.00 35.19 4.08
4552 4923 2.817834 GCCGTGCAATACAGCGGA 60.818 61.111 14.67 0.00 42.17 5.54
4730 5129 3.181774 GGTGTCGATCGATTAACCATTCG 59.818 47.826 28.51 0.00 36.72 3.34
4815 5222 3.802418 AACTGACCCGTGCGTGACC 62.802 63.158 0.00 0.00 0.00 4.02
5034 5462 8.780616 ATTCCTCTCTCTAATCAGAATTCAGA 57.219 34.615 8.44 5.51 0.00 3.27
5055 5483 7.578852 TCAGATCGATTCATTACAATCATTGC 58.421 34.615 0.00 0.00 32.99 3.56
5110 5541 2.693591 TCCTTTGAGACATACTAGCGGG 59.306 50.000 0.00 0.00 0.00 6.13
5116 5547 1.073444 AGACATACTAGCGGGGATCGA 59.927 52.381 0.00 0.00 42.43 3.59
5144 5575 5.752892 ATAAATGTGCTGCTGAATCTGAG 57.247 39.130 0.00 0.00 0.00 3.35
5145 5576 1.380524 ATGTGCTGCTGAATCTGAGC 58.619 50.000 0.00 0.00 36.95 4.26
5146 5577 0.675837 TGTGCTGCTGAATCTGAGCC 60.676 55.000 0.00 0.00 35.43 4.70
5147 5578 0.675837 GTGCTGCTGAATCTGAGCCA 60.676 55.000 0.00 0.00 35.43 4.75
5148 5579 0.255033 TGCTGCTGAATCTGAGCCAT 59.745 50.000 0.00 0.00 35.43 4.40
5149 5580 0.663688 GCTGCTGAATCTGAGCCATG 59.336 55.000 0.00 0.00 35.43 3.66
5150 5581 2.017623 GCTGCTGAATCTGAGCCATGT 61.018 52.381 0.00 0.00 35.43 3.21
5151 5582 1.941294 CTGCTGAATCTGAGCCATGTC 59.059 52.381 0.00 0.00 35.43 3.06
5152 5583 1.279846 TGCTGAATCTGAGCCATGTCA 59.720 47.619 0.00 0.00 35.43 3.58
5153 5584 1.941294 GCTGAATCTGAGCCATGTCAG 59.059 52.381 6.94 6.94 44.71 3.51
5189 5642 6.761099 CTCAGTGGAGTACAGTTATACTGT 57.239 41.667 15.86 15.86 45.72 3.55
5203 5656 7.739295 CAGTTATACTGTAACAGTGCGAATTT 58.261 34.615 0.00 0.00 45.01 1.82
5226 5679 5.234752 TGCAACGTATACTCTTGACAATGT 58.765 37.500 12.18 0.00 0.00 2.71
5231 5684 6.916440 ACGTATACTCTTGACAATGTGTACA 58.084 36.000 18.74 0.00 30.80 2.90
5261 5714 9.588096 ACTGAAACCATTTTTAATACTTCCTCT 57.412 29.630 0.00 0.00 0.00 3.69
5262 5715 9.846248 CTGAAACCATTTTTAATACTTCCTCTG 57.154 33.333 0.00 0.00 0.00 3.35
5263 5716 9.362151 TGAAACCATTTTTAATACTTCCTCTGT 57.638 29.630 0.00 0.00 0.00 3.41
5266 5719 8.934023 ACCATTTTTAATACTTCCTCTGTTCA 57.066 30.769 0.00 0.00 0.00 3.18
5267 5720 9.533831 ACCATTTTTAATACTTCCTCTGTTCAT 57.466 29.630 0.00 0.00 0.00 2.57
5279 5732 9.232473 ACTTCCTCTGTTCATTTTTATAAGACC 57.768 33.333 0.00 0.00 0.00 3.85
5280 5733 9.454859 CTTCCTCTGTTCATTTTTATAAGACCT 57.545 33.333 0.00 0.00 0.00 3.85
5281 5734 9.807921 TTCCTCTGTTCATTTTTATAAGACCTT 57.192 29.630 0.00 0.00 0.00 3.50
5282 5735 9.231297 TCCTCTGTTCATTTTTATAAGACCTTG 57.769 33.333 0.00 0.00 0.00 3.61
5283 5736 9.231297 CCTCTGTTCATTTTTATAAGACCTTGA 57.769 33.333 0.00 0.00 0.00 3.02
5295 5748 9.581289 TTTATAAGACCTTGAAAACATTCCAGA 57.419 29.630 0.00 0.00 0.00 3.86
5296 5749 5.774498 AAGACCTTGAAAACATTCCAGAC 57.226 39.130 0.00 0.00 0.00 3.51
5297 5750 4.792068 AGACCTTGAAAACATTCCAGACA 58.208 39.130 0.00 0.00 0.00 3.41
5298 5751 5.200483 AGACCTTGAAAACATTCCAGACAA 58.800 37.500 0.00 0.00 0.00 3.18
5299 5752 5.067805 AGACCTTGAAAACATTCCAGACAAC 59.932 40.000 0.00 0.00 0.00 3.32
5300 5753 4.202010 ACCTTGAAAACATTCCAGACAACG 60.202 41.667 0.00 0.00 0.00 4.10
5301 5754 4.202010 CCTTGAAAACATTCCAGACAACGT 60.202 41.667 0.00 0.00 0.00 3.99
5302 5755 4.285807 TGAAAACATTCCAGACAACGTG 57.714 40.909 0.00 0.00 0.00 4.49
5303 5756 2.774439 AAACATTCCAGACAACGTGC 57.226 45.000 0.00 0.00 0.00 5.34
5304 5757 1.674359 AACATTCCAGACAACGTGCA 58.326 45.000 0.00 0.00 0.00 4.57
5305 5758 1.674359 ACATTCCAGACAACGTGCAA 58.326 45.000 0.00 0.00 0.00 4.08
5306 5759 2.020720 ACATTCCAGACAACGTGCAAA 58.979 42.857 0.00 0.00 0.00 3.68
5307 5760 2.425312 ACATTCCAGACAACGTGCAAAA 59.575 40.909 0.00 0.00 0.00 2.44
5308 5761 2.553079 TTCCAGACAACGTGCAAAAC 57.447 45.000 0.00 0.00 0.00 2.43
5309 5762 1.454201 TCCAGACAACGTGCAAAACA 58.546 45.000 0.00 0.00 0.00 2.83
5310 5763 1.400142 TCCAGACAACGTGCAAAACAG 59.600 47.619 0.00 0.00 0.00 3.16
5311 5764 1.191096 CAGACAACGTGCAAAACAGC 58.809 50.000 0.00 0.00 0.00 4.40
5312 5765 0.100503 AGACAACGTGCAAAACAGCC 59.899 50.000 0.00 0.00 0.00 4.85
5313 5766 0.100503 GACAACGTGCAAAACAGCCT 59.899 50.000 0.00 0.00 0.00 4.58
5314 5767 1.332375 GACAACGTGCAAAACAGCCTA 59.668 47.619 0.00 0.00 0.00 3.93
5315 5768 1.953686 ACAACGTGCAAAACAGCCTAT 59.046 42.857 0.00 0.00 0.00 2.57
5316 5769 2.360801 ACAACGTGCAAAACAGCCTATT 59.639 40.909 0.00 0.00 0.00 1.73
5317 5770 3.181480 ACAACGTGCAAAACAGCCTATTT 60.181 39.130 0.00 0.00 0.00 1.40
5318 5771 3.726291 ACGTGCAAAACAGCCTATTTT 57.274 38.095 0.00 0.00 0.00 1.82
5319 5772 4.839668 ACGTGCAAAACAGCCTATTTTA 57.160 36.364 0.00 0.00 0.00 1.52
5320 5773 5.189659 ACGTGCAAAACAGCCTATTTTAA 57.810 34.783 0.00 0.00 0.00 1.52
5321 5774 5.219633 ACGTGCAAAACAGCCTATTTTAAG 58.780 37.500 0.00 0.00 0.00 1.85
5322 5775 5.219633 CGTGCAAAACAGCCTATTTTAAGT 58.780 37.500 0.00 0.00 0.00 2.24
5323 5776 5.689961 CGTGCAAAACAGCCTATTTTAAGTT 59.310 36.000 0.00 0.00 0.00 2.66
5324 5777 6.345723 CGTGCAAAACAGCCTATTTTAAGTTG 60.346 38.462 0.00 0.00 0.00 3.16
5325 5778 6.478673 GTGCAAAACAGCCTATTTTAAGTTGT 59.521 34.615 0.00 0.00 0.00 3.32
5326 5779 6.699642 TGCAAAACAGCCTATTTTAAGTTGTC 59.300 34.615 0.00 0.00 0.00 3.18
5327 5780 6.923508 GCAAAACAGCCTATTTTAAGTTGTCT 59.076 34.615 0.00 0.00 0.00 3.41
5328 5781 7.096065 GCAAAACAGCCTATTTTAAGTTGTCTG 60.096 37.037 0.00 0.00 0.00 3.51
5329 5782 7.817418 AAACAGCCTATTTTAAGTTGTCTGA 57.183 32.000 0.00 0.00 0.00 3.27
5330 5783 7.817418 AACAGCCTATTTTAAGTTGTCTGAA 57.183 32.000 0.00 0.00 0.00 3.02
5331 5784 7.817418 ACAGCCTATTTTAAGTTGTCTGAAA 57.183 32.000 0.00 0.00 0.00 2.69
5332 5785 7.649057 ACAGCCTATTTTAAGTTGTCTGAAAC 58.351 34.615 0.00 0.00 0.00 2.78
5333 5786 6.797033 CAGCCTATTTTAAGTTGTCTGAAACG 59.203 38.462 0.00 0.00 35.13 3.60
5334 5787 6.708949 AGCCTATTTTAAGTTGTCTGAAACGA 59.291 34.615 0.00 0.00 35.13 3.85
5335 5788 7.390718 AGCCTATTTTAAGTTGTCTGAAACGAT 59.609 33.333 0.00 0.00 35.13 3.73
5336 5789 8.021396 GCCTATTTTAAGTTGTCTGAAACGATT 58.979 33.333 0.00 0.00 35.13 3.34
5345 5798 9.878599 AAGTTGTCTGAAACGATTATAAAAGTG 57.121 29.630 0.00 0.00 35.13 3.16
5346 5799 9.268268 AGTTGTCTGAAACGATTATAAAAGTGA 57.732 29.630 0.00 0.00 35.13 3.41
5347 5800 9.872757 GTTGTCTGAAACGATTATAAAAGTGAA 57.127 29.630 0.00 0.00 0.00 3.18
5350 5803 9.490663 GTCTGAAACGATTATAAAAGTGAATGG 57.509 33.333 0.00 0.00 0.00 3.16
5351 5804 9.443323 TCTGAAACGATTATAAAAGTGAATGGA 57.557 29.630 0.00 0.00 0.00 3.41
5352 5805 9.708222 CTGAAACGATTATAAAAGTGAATGGAG 57.292 33.333 0.00 0.00 0.00 3.86
5353 5806 8.673711 TGAAACGATTATAAAAGTGAATGGAGG 58.326 33.333 0.00 0.00 0.00 4.30
5354 5807 7.568199 AACGATTATAAAAGTGAATGGAGGG 57.432 36.000 0.00 0.00 0.00 4.30
5355 5808 6.895782 ACGATTATAAAAGTGAATGGAGGGA 58.104 36.000 0.00 0.00 0.00 4.20
5356 5809 6.992715 ACGATTATAAAAGTGAATGGAGGGAG 59.007 38.462 0.00 0.00 0.00 4.30
5473 5940 6.207691 ACATCAACAGTACATTAATTGGCC 57.792 37.500 0.00 0.00 0.00 5.36
5486 5953 0.333312 ATTGGCCATCCCGTTACCAA 59.667 50.000 6.09 0.00 44.04 3.67
5517 5984 1.202031 CCGTAAGCGTTCTCCATTTGC 60.202 52.381 0.00 0.00 36.15 3.68
5550 6017 1.276138 TCCTTGAAGCGAGCATCTTCA 59.724 47.619 10.09 10.09 45.62 3.02
5588 6055 1.524002 CATCCTCGACCATGGCACT 59.476 57.895 13.04 0.00 0.00 4.40
5613 6080 5.878332 TGCAATATGTAGAACACACCTTG 57.122 39.130 0.00 0.00 40.86 3.61
5626 6094 6.605594 AGAACACACCTTGAATTGTTTCCTTA 59.394 34.615 0.00 0.00 32.34 2.69
5627 6095 6.783708 ACACACCTTGAATTGTTTCCTTAA 57.216 33.333 0.00 0.00 0.00 1.85
5636 6104 5.779771 TGAATTGTTTCCTTAAGAGCCCATT 59.220 36.000 3.36 0.00 0.00 3.16
5653 6121 6.710278 AGCCCATTTTGCACTGTTATTTATT 58.290 32.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.603739 GCGGGAGGGCTCAGTTTTT 60.604 57.895 0.00 0.00 0.00 1.94
9 10 2.034221 GCGGGAGGGCTCAGTTTT 59.966 61.111 0.00 0.00 0.00 2.43
10 11 4.035102 GGCGGGAGGGCTCAGTTT 62.035 66.667 0.00 0.00 38.40 2.66
29 30 0.313043 CGATGGATCTTGGCCATTGC 59.687 55.000 6.09 0.07 45.81 3.56
30 31 1.335810 CACGATGGATCTTGGCCATTG 59.664 52.381 6.09 2.48 45.81 2.82
31 32 1.683943 CACGATGGATCTTGGCCATT 58.316 50.000 6.09 0.00 45.81 3.16
33 34 1.451927 GCACGATGGATCTTGGCCA 60.452 57.895 0.00 0.00 40.24 5.36
34 35 2.189499 GGCACGATGGATCTTGGCC 61.189 63.158 8.09 0.00 43.02 5.36
35 36 1.451927 TGGCACGATGGATCTTGGC 60.452 57.895 11.43 11.43 46.97 4.52
36 37 1.097547 GGTGGCACGATGGATCTTGG 61.098 60.000 12.17 0.00 0.00 3.61
37 38 0.392863 TGGTGGCACGATGGATCTTG 60.393 55.000 12.17 0.00 0.00 3.02
38 39 0.548031 ATGGTGGCACGATGGATCTT 59.452 50.000 14.63 0.00 0.00 2.40
39 40 0.179037 CATGGTGGCACGATGGATCT 60.179 55.000 28.52 0.11 31.75 2.75
40 41 2.324215 CATGGTGGCACGATGGATC 58.676 57.895 28.52 7.67 31.75 3.36
41 42 4.565360 CATGGTGGCACGATGGAT 57.435 55.556 28.52 6.78 31.75 3.41
51 52 2.123726 GCCTTAGGCCCATGGTGG 60.124 66.667 13.12 4.10 44.06 4.61
61 62 0.895530 TCGTCTTCTGTGGCCTTAGG 59.104 55.000 3.32 0.00 0.00 2.69
62 63 1.134965 CCTCGTCTTCTGTGGCCTTAG 60.135 57.143 3.32 1.85 0.00 2.18
63 64 0.895530 CCTCGTCTTCTGTGGCCTTA 59.104 55.000 3.32 0.00 0.00 2.69
64 65 1.674057 CCTCGTCTTCTGTGGCCTT 59.326 57.895 3.32 0.00 0.00 4.35
65 66 2.948720 GCCTCGTCTTCTGTGGCCT 61.949 63.158 3.32 0.00 37.81 5.19
66 67 2.435059 GCCTCGTCTTCTGTGGCC 60.435 66.667 0.00 0.00 37.81 5.36
67 68 2.811317 CGCCTCGTCTTCTGTGGC 60.811 66.667 0.00 0.00 40.14 5.01
68 69 2.125912 CCGCCTCGTCTTCTGTGG 60.126 66.667 0.00 0.00 0.00 4.17
69 70 1.444553 GTCCGCCTCGTCTTCTGTG 60.445 63.158 0.00 0.00 0.00 3.66
70 71 2.637383 GGTCCGCCTCGTCTTCTGT 61.637 63.158 0.00 0.00 0.00 3.41
71 72 2.182030 GGTCCGCCTCGTCTTCTG 59.818 66.667 0.00 0.00 0.00 3.02
72 73 3.441290 CGGTCCGCCTCGTCTTCT 61.441 66.667 0.00 0.00 0.00 2.85
73 74 3.437795 TCGGTCCGCCTCGTCTTC 61.438 66.667 6.34 0.00 0.00 2.87
74 75 3.745803 GTCGGTCCGCCTCGTCTT 61.746 66.667 6.34 0.00 0.00 3.01
95 96 4.106925 CTGCCTCCTGTCAGGGCC 62.107 72.222 19.11 8.03 44.71 5.80
96 97 3.005539 TCTGCCTCCTGTCAGGGC 61.006 66.667 19.11 15.18 45.45 5.19
97 98 2.365586 CCTCTGCCTCCTGTCAGGG 61.366 68.421 19.11 9.44 35.59 4.45
98 99 0.906756 TTCCTCTGCCTCCTGTCAGG 60.907 60.000 13.21 13.21 36.46 3.86
99 100 0.248843 GTTCCTCTGCCTCCTGTCAG 59.751 60.000 0.00 0.00 0.00 3.51
100 101 1.194781 GGTTCCTCTGCCTCCTGTCA 61.195 60.000 0.00 0.00 0.00 3.58
101 102 1.599576 GGTTCCTCTGCCTCCTGTC 59.400 63.158 0.00 0.00 0.00 3.51
102 103 1.920835 GGGTTCCTCTGCCTCCTGT 60.921 63.158 0.00 0.00 0.00 4.00
103 104 0.325671 TAGGGTTCCTCTGCCTCCTG 60.326 60.000 0.00 0.00 34.61 3.86
104 105 0.417841 TTAGGGTTCCTCTGCCTCCT 59.582 55.000 0.00 0.00 34.61 3.69
105 106 1.065345 GTTTAGGGTTCCTCTGCCTCC 60.065 57.143 0.00 0.00 34.61 4.30
106 107 1.909986 AGTTTAGGGTTCCTCTGCCTC 59.090 52.381 0.00 0.00 34.61 4.70
107 108 2.046280 AGTTTAGGGTTCCTCTGCCT 57.954 50.000 0.00 0.00 34.61 4.75
108 109 2.881111 AAGTTTAGGGTTCCTCTGCC 57.119 50.000 0.00 0.00 34.61 4.85
109 110 4.399219 AGAAAAGTTTAGGGTTCCTCTGC 58.601 43.478 0.00 0.00 34.61 4.26
110 111 5.241728 CCAAGAAAAGTTTAGGGTTCCTCTG 59.758 44.000 0.00 0.00 34.61 3.35
111 112 5.133830 TCCAAGAAAAGTTTAGGGTTCCTCT 59.866 40.000 0.00 0.00 34.61 3.69
112 113 5.382616 TCCAAGAAAAGTTTAGGGTTCCTC 58.617 41.667 0.00 0.00 34.61 3.71
113 114 5.133830 TCTCCAAGAAAAGTTTAGGGTTCCT 59.866 40.000 0.00 0.00 37.71 3.36
114 115 5.382616 TCTCCAAGAAAAGTTTAGGGTTCC 58.617 41.667 0.00 0.00 0.00 3.62
115 116 6.715264 TCATCTCCAAGAAAAGTTTAGGGTTC 59.285 38.462 0.00 0.00 0.00 3.62
116 117 6.610830 TCATCTCCAAGAAAAGTTTAGGGTT 58.389 36.000 0.00 0.00 0.00 4.11
117 118 6.200878 TCATCTCCAAGAAAAGTTTAGGGT 57.799 37.500 0.00 0.00 0.00 4.34
118 119 5.649831 CCTCATCTCCAAGAAAAGTTTAGGG 59.350 44.000 0.00 0.00 0.00 3.53
119 120 6.150140 CACCTCATCTCCAAGAAAAGTTTAGG 59.850 42.308 0.00 0.00 0.00 2.69
120 121 6.712547 ACACCTCATCTCCAAGAAAAGTTTAG 59.287 38.462 0.00 0.00 0.00 1.85
121 122 6.601332 ACACCTCATCTCCAAGAAAAGTTTA 58.399 36.000 0.00 0.00 0.00 2.01
122 123 5.449553 ACACCTCATCTCCAAGAAAAGTTT 58.550 37.500 0.00 0.00 0.00 2.66
123 124 5.053978 ACACCTCATCTCCAAGAAAAGTT 57.946 39.130 0.00 0.00 0.00 2.66
124 125 4.505742 GGACACCTCATCTCCAAGAAAAGT 60.506 45.833 0.00 0.00 0.00 2.66
125 126 4.006319 GGACACCTCATCTCCAAGAAAAG 58.994 47.826 0.00 0.00 0.00 2.27
126 127 3.652869 AGGACACCTCATCTCCAAGAAAA 59.347 43.478 0.00 0.00 0.00 2.29
127 128 3.251484 AGGACACCTCATCTCCAAGAAA 58.749 45.455 0.00 0.00 0.00 2.52
128 129 2.907892 AGGACACCTCATCTCCAAGAA 58.092 47.619 0.00 0.00 0.00 2.52
129 130 2.630889 AGGACACCTCATCTCCAAGA 57.369 50.000 0.00 0.00 0.00 3.02
130 131 2.836981 AGAAGGACACCTCATCTCCAAG 59.163 50.000 0.00 0.00 30.89 3.61
131 132 2.907892 AGAAGGACACCTCATCTCCAA 58.092 47.619 0.00 0.00 30.89 3.53
132 133 2.630889 AGAAGGACACCTCATCTCCA 57.369 50.000 0.00 0.00 30.89 3.86
133 134 5.622346 ATTAAGAAGGACACCTCATCTCC 57.378 43.478 0.00 0.00 30.89 3.71
134 135 5.295540 GCAATTAAGAAGGACACCTCATCTC 59.704 44.000 0.00 0.00 30.89 2.75
135 136 5.045286 AGCAATTAAGAAGGACACCTCATCT 60.045 40.000 0.00 0.00 30.89 2.90
136 137 5.189180 AGCAATTAAGAAGGACACCTCATC 58.811 41.667 0.00 0.00 30.89 2.92
137 138 5.184892 AGCAATTAAGAAGGACACCTCAT 57.815 39.130 0.00 0.00 30.89 2.90
138 139 4.640771 AGCAATTAAGAAGGACACCTCA 57.359 40.909 0.00 0.00 30.89 3.86
139 140 5.582665 CACTAGCAATTAAGAAGGACACCTC 59.417 44.000 0.00 0.00 30.89 3.85
140 141 5.491982 CACTAGCAATTAAGAAGGACACCT 58.508 41.667 0.00 0.00 33.87 4.00
141 142 4.095036 GCACTAGCAATTAAGAAGGACACC 59.905 45.833 0.00 0.00 41.58 4.16
142 143 4.938226 AGCACTAGCAATTAAGAAGGACAC 59.062 41.667 0.00 0.00 45.49 3.67
143 144 5.165961 AGCACTAGCAATTAAGAAGGACA 57.834 39.130 0.00 0.00 45.49 4.02
144 145 7.611213 TTTAGCACTAGCAATTAAGAAGGAC 57.389 36.000 0.00 0.00 45.49 3.85
147 148 9.604626 GCATATTTAGCACTAGCAATTAAGAAG 57.395 33.333 0.00 0.00 45.49 2.85
148 149 9.119418 TGCATATTTAGCACTAGCAATTAAGAA 57.881 29.630 0.00 0.00 45.49 2.52
149 150 8.675705 TGCATATTTAGCACTAGCAATTAAGA 57.324 30.769 0.00 0.00 45.49 2.10
150 151 9.173939 GTTGCATATTTAGCACTAGCAATTAAG 57.826 33.333 0.00 0.00 45.49 1.85
151 152 8.902806 AGTTGCATATTTAGCACTAGCAATTAA 58.097 29.630 0.00 0.00 45.49 1.40
152 153 8.450578 AGTTGCATATTTAGCACTAGCAATTA 57.549 30.769 0.00 0.00 45.49 1.40
153 154 7.338800 AGTTGCATATTTAGCACTAGCAATT 57.661 32.000 0.00 0.00 45.49 2.32
154 155 6.949352 AGTTGCATATTTAGCACTAGCAAT 57.051 33.333 0.00 0.00 45.49 3.56
155 156 6.599244 AGAAGTTGCATATTTAGCACTAGCAA 59.401 34.615 0.00 0.00 45.49 3.91
156 157 6.115446 AGAAGTTGCATATTTAGCACTAGCA 58.885 36.000 0.00 0.00 45.49 3.49
157 158 6.481644 AGAGAAGTTGCATATTTAGCACTAGC 59.518 38.462 0.00 0.00 42.54 3.42
158 159 8.430801 AAGAGAAGTTGCATATTTAGCACTAG 57.569 34.615 0.00 0.00 42.54 2.57
159 160 8.792830 AAAGAGAAGTTGCATATTTAGCACTA 57.207 30.769 0.00 0.00 42.54 2.74
160 161 7.391554 TGAAAGAGAAGTTGCATATTTAGCACT 59.608 33.333 0.00 0.00 42.54 4.40
161 162 7.530010 TGAAAGAGAAGTTGCATATTTAGCAC 58.470 34.615 0.00 0.00 42.54 4.40
162 163 7.627088 GCTGAAAGAGAAGTTGCATATTTAGCA 60.627 37.037 0.00 0.00 36.57 3.49
163 164 6.690528 GCTGAAAGAGAAGTTGCATATTTAGC 59.309 38.462 0.00 0.00 34.07 3.09
164 165 7.755591 TGCTGAAAGAGAAGTTGCATATTTAG 58.244 34.615 0.00 0.00 34.07 1.85
169 170 6.262944 TCTTTTGCTGAAAGAGAAGTTGCATA 59.737 34.615 10.51 0.00 46.69 3.14
184 185 3.561313 GGACCTGGGTTATCTTTTGCTGA 60.561 47.826 0.00 0.00 0.00 4.26
186 187 2.649816 AGGACCTGGGTTATCTTTTGCT 59.350 45.455 0.00 0.00 0.00 3.91
187 188 3.017442 GAGGACCTGGGTTATCTTTTGC 58.983 50.000 0.00 0.00 0.00 3.68
188 189 4.265073 CAGAGGACCTGGGTTATCTTTTG 58.735 47.826 0.00 0.00 39.23 2.44
192 193 1.273838 TGCAGAGGACCTGGGTTATCT 60.274 52.381 0.00 0.00 43.13 1.98
295 304 2.148687 CAGTCAACTGAGTCGCTGC 58.851 57.895 4.05 0.00 46.59 5.25
322 331 7.730364 AAGTGACTATTGACTTGTCGAATTT 57.270 32.000 0.00 0.00 32.96 1.82
415 424 3.434319 CCACCACAGGCATCGCAC 61.434 66.667 0.00 0.00 0.00 5.34
494 509 3.866582 GAGAGGATGGTGGGCGGG 61.867 72.222 0.00 0.00 0.00 6.13
495 510 4.227134 CGAGAGGATGGTGGGCGG 62.227 72.222 0.00 0.00 0.00 6.13
496 511 4.899239 GCGAGAGGATGGTGGGCG 62.899 72.222 0.00 0.00 0.00 6.13
497 512 4.899239 CGCGAGAGGATGGTGGGC 62.899 72.222 0.00 0.00 0.00 5.36
498 513 4.899239 GCGCGAGAGGATGGTGGG 62.899 72.222 12.10 0.00 0.00 4.61
502 517 4.880537 AAGCGCGCGAGAGGATGG 62.881 66.667 37.18 0.23 0.00 3.51
503 518 2.353435 GAAAAGCGCGCGAGAGGATG 62.353 60.000 37.18 1.14 0.00 3.51
504 519 2.125512 AAAAGCGCGCGAGAGGAT 60.126 55.556 37.18 10.93 0.00 3.24
518 533 3.000727 GGAATCGAAGCGAGGAAGAAAA 58.999 45.455 0.00 0.00 39.91 2.29
519 534 2.618053 GGAATCGAAGCGAGGAAGAAA 58.382 47.619 0.00 0.00 39.91 2.52
523 545 1.520666 GGGGAATCGAAGCGAGGAA 59.479 57.895 0.00 0.00 39.91 3.36
551 573 1.961277 ACACGTTGCTGCTGGCTAC 60.961 57.895 0.00 6.72 41.84 3.58
552 574 1.960763 CACACGTTGCTGCTGGCTA 60.961 57.895 0.00 0.00 42.39 3.93
827 870 0.968393 TGGTGGTGGTGATCGATCGA 60.968 55.000 21.86 21.86 0.00 3.59
896 953 3.262686 GGAAATCCGACGGCGAGC 61.263 66.667 15.16 3.85 40.82 5.03
1192 1292 1.924524 CGTCATAAACAAGTCCGCGAT 59.075 47.619 8.23 0.00 0.00 4.58
1197 1297 0.725117 CCGCCGTCATAAACAAGTCC 59.275 55.000 0.00 0.00 0.00 3.85
1292 1396 2.045926 CTTCCCGGTGGCTCCTTG 60.046 66.667 0.00 0.00 0.00 3.61
1373 1477 2.434702 GGTGATCCCCTTGAGTATCGTT 59.565 50.000 0.00 0.00 38.61 3.85
1879 1983 4.477975 CTCGCGGACGGACCTCAC 62.478 72.222 6.13 0.00 40.63 3.51
1880 1984 4.710167 TCTCGCGGACGGACCTCA 62.710 66.667 6.13 0.00 40.63 3.86
1881 1985 4.176851 GTCTCGCGGACGGACCTC 62.177 72.222 6.13 0.00 40.63 3.85
2337 2441 3.351416 GCCGGGTTGACGTGGAAC 61.351 66.667 2.18 0.00 0.00 3.62
2399 2503 9.548208 GAAAGAAGTTGATAGTTGCAGTTAATC 57.452 33.333 0.00 0.00 0.00 1.75
2409 2513 8.697507 AGTTTCATGGAAAGAAGTTGATAGTT 57.302 30.769 0.00 0.00 31.87 2.24
2410 2514 9.442047 CTAGTTTCATGGAAAGAAGTTGATAGT 57.558 33.333 0.00 0.00 31.87 2.12
2413 2517 6.944862 AGCTAGTTTCATGGAAAGAAGTTGAT 59.055 34.615 0.00 0.00 31.87 2.57
2414 2518 6.299141 AGCTAGTTTCATGGAAAGAAGTTGA 58.701 36.000 0.00 0.00 31.87 3.18
2415 2519 6.566197 AGCTAGTTTCATGGAAAGAAGTTG 57.434 37.500 0.00 0.00 31.87 3.16
2417 2521 7.224297 TGTTAGCTAGTTTCATGGAAAGAAGT 58.776 34.615 0.00 0.00 31.87 3.01
2469 2585 0.390124 TGGGTTGTCTAACGCTTCGT 59.610 50.000 8.36 0.00 46.50 3.85
2476 2592 4.771054 TCTACCTCTCTTGGGTTGTCTAAC 59.229 45.833 0.00 0.00 38.19 2.34
2477 2593 5.006896 TCTACCTCTCTTGGGTTGTCTAA 57.993 43.478 0.00 0.00 38.19 2.10
2485 2601 5.124617 GCTTTCATTTTCTACCTCTCTTGGG 59.875 44.000 0.00 0.00 0.00 4.12
2487 2603 7.279758 CCTAGCTTTCATTTTCTACCTCTCTTG 59.720 40.741 0.00 0.00 0.00 3.02
2490 2606 5.525745 GCCTAGCTTTCATTTTCTACCTCTC 59.474 44.000 0.00 0.00 0.00 3.20
2491 2607 5.045578 TGCCTAGCTTTCATTTTCTACCTCT 60.046 40.000 0.00 0.00 0.00 3.69
2548 2665 1.153249 CCGCGATGCTAAAAGGGGA 60.153 57.895 8.23 0.00 38.77 4.81
2624 2741 1.906333 TGCACTCCACACTCGCCTA 60.906 57.895 0.00 0.00 0.00 3.93
2680 2801 2.414691 GGCATTCTCACCGCTCTTTTTC 60.415 50.000 0.00 0.00 0.00 2.29
2706 2827 7.436118 AGCACACTACTACTAGTACTAGCTAG 58.564 42.308 26.54 24.78 42.96 3.42
2720 2841 3.250744 CGCAAAAGCTAGCACACTACTA 58.749 45.455 18.83 0.00 0.00 1.82
2842 2965 1.337071 GAGCTATCGACATCGGTCCAA 59.663 52.381 0.73 0.00 41.13 3.53
2867 2990 0.679505 GCACTGGACTGGACTGTGTA 59.320 55.000 10.68 0.00 39.20 2.90
2913 3152 8.033038 TGATTAGACAGTGGTTACATTACACTC 58.967 37.037 0.00 0.00 43.09 3.51
2994 3258 4.322101 CTTGTATAAAAGACAAGCGCGT 57.678 40.909 8.43 0.00 45.23 6.01
3009 3273 9.342308 TCTTGATCTTGTTCAGAAAACTTGTAT 57.658 29.630 0.00 0.00 34.16 2.29
3025 3289 4.418392 CGCTTGGGATTTTCTTGATCTTG 58.582 43.478 0.00 0.00 0.00 3.02
3031 3295 2.165030 AGATGCGCTTGGGATTTTCTTG 59.835 45.455 9.73 0.00 0.00 3.02
3047 3311 0.040603 GCGCAAATGGCTAGAGATGC 60.041 55.000 0.30 0.00 41.67 3.91
3109 3375 0.319728 CCTCCAGTCCAGTCTGTGTG 59.680 60.000 0.00 0.00 34.02 3.82
3122 3388 2.030540 CACTGAAAACACATGCCTCCAG 60.031 50.000 0.00 0.00 0.00 3.86
3123 3389 1.955778 CACTGAAAACACATGCCTCCA 59.044 47.619 0.00 0.00 0.00 3.86
3124 3390 1.336240 GCACTGAAAACACATGCCTCC 60.336 52.381 0.00 0.00 0.00 4.30
3125 3391 1.610522 AGCACTGAAAACACATGCCTC 59.389 47.619 0.00 0.00 36.96 4.70
3126 3392 1.338973 CAGCACTGAAAACACATGCCT 59.661 47.619 0.00 0.00 36.96 4.75
3294 3581 1.153469 CCGCTTCTCCTTCTCAGGC 60.153 63.158 0.00 0.00 40.58 4.85
3321 3634 0.463116 AATATCGACGGTGGTTGCCC 60.463 55.000 0.00 0.00 0.00 5.36
3359 3677 3.573110 GGCGGTATATCTCCAACTGTAGT 59.427 47.826 0.00 0.00 0.00 2.73
3380 3698 1.522569 CTCCTGTCTAAAGCGGGGG 59.477 63.158 0.00 0.00 33.31 5.40
3381 3699 0.976073 TCCTCCTGTCTAAAGCGGGG 60.976 60.000 0.00 0.00 33.31 5.73
3457 3786 3.535860 CAGCAGAAAAGAAAACGACTCG 58.464 45.455 0.00 0.00 0.00 4.18
3463 3792 2.541346 GCCAAGCAGCAGAAAAGAAAAC 59.459 45.455 0.00 0.00 0.00 2.43
3520 3864 1.298993 CCTGCTCTGGTGATGTGCT 59.701 57.895 0.00 0.00 0.00 4.40
3537 3881 3.902162 TTCGTGTACGTGCTCGCCC 62.902 63.158 20.74 0.00 41.18 6.13
3563 3907 1.336056 GGAATCTAGCGGACGGATCAC 60.336 57.143 0.00 0.00 0.00 3.06
3590 3950 0.303493 TGAACGTTCAGTTTGCGCTC 59.697 50.000 26.53 0.00 44.35 5.03
3641 4001 0.238289 GTTGGCGATAATGGGCATCG 59.762 55.000 1.00 1.00 46.25 3.84
3686 4046 4.788100 CGAACAACAGTCAGAAAACACAAG 59.212 41.667 0.00 0.00 0.00 3.16
3733 4098 1.725557 GATCGCTGTACTCCGCCTGA 61.726 60.000 0.00 0.00 0.00 3.86
3736 4101 2.353607 CGATCGCTGTACTCCGCC 60.354 66.667 0.26 0.00 0.00 6.13
3796 4161 4.143333 GCGAGCTCCCTGGCGTAA 62.143 66.667 8.47 0.00 33.11 3.18
4057 4428 4.129737 ATCCGGTCCTGCACGTCG 62.130 66.667 0.00 0.00 0.00 5.12
4060 4431 4.838152 CCCATCCGGTCCTGCACG 62.838 72.222 0.00 0.00 0.00 5.34
4730 5129 1.629043 TATATCCTGCGACCTGGTCC 58.371 55.000 20.68 13.68 0.00 4.46
4795 5202 3.403057 CACGCACGGGTCAGTTCG 61.403 66.667 0.00 0.00 36.85 3.95
5029 5457 8.071967 GCAATGATTGTAATGAATCGATCTGAA 58.928 33.333 7.05 0.00 35.43 3.02
5030 5458 7.308169 GGCAATGATTGTAATGAATCGATCTGA 60.308 37.037 7.05 0.00 35.43 3.27
5031 5459 6.800408 GGCAATGATTGTAATGAATCGATCTG 59.200 38.462 7.05 0.00 35.43 2.90
5032 5460 6.347969 CGGCAATGATTGTAATGAATCGATCT 60.348 38.462 7.05 0.00 35.43 2.75
5033 5461 5.791974 CGGCAATGATTGTAATGAATCGATC 59.208 40.000 7.05 0.00 35.43 3.69
5034 5462 5.469760 TCGGCAATGATTGTAATGAATCGAT 59.530 36.000 7.05 0.00 35.43 3.59
5054 5482 2.543012 CTCTCACACATTCATCATCGGC 59.457 50.000 0.00 0.00 0.00 5.54
5055 5483 4.050852 TCTCTCACACATTCATCATCGG 57.949 45.455 0.00 0.00 0.00 4.18
5116 5547 6.946583 AGATTCAGCAGCACATTTATATGGAT 59.053 34.615 0.00 0.00 36.01 3.41
5121 5552 5.237996 GCTCAGATTCAGCAGCACATTTATA 59.762 40.000 0.00 0.00 36.82 0.98
5124 5555 2.163815 GCTCAGATTCAGCAGCACATTT 59.836 45.455 0.00 0.00 36.82 2.32
5144 5575 0.179034 GTGAGGGATCCTGACATGGC 60.179 60.000 12.58 0.00 37.68 4.40
5145 5576 1.415659 GAGTGAGGGATCCTGACATGG 59.584 57.143 12.58 0.00 40.19 3.66
5146 5577 1.415659 GGAGTGAGGGATCCTGACATG 59.584 57.143 12.58 0.00 40.19 3.21
5147 5578 1.293458 AGGAGTGAGGGATCCTGACAT 59.707 52.381 12.58 0.00 44.42 3.06
5148 5579 0.712979 AGGAGTGAGGGATCCTGACA 59.287 55.000 12.58 6.83 44.42 3.58
5149 5580 1.342474 TGAGGAGTGAGGGATCCTGAC 60.342 57.143 12.58 5.99 46.12 3.51
5150 5581 1.010795 TGAGGAGTGAGGGATCCTGA 58.989 55.000 12.58 0.00 46.12 3.86
5151 5582 1.342874 ACTGAGGAGTGAGGGATCCTG 60.343 57.143 12.58 0.00 46.12 3.86
5153 5584 3.625314 ACTGAGGAGTGAGGGATCC 57.375 57.895 1.92 1.92 35.71 3.36
5189 5642 2.032302 ACGTTGCAAATTCGCACTGTTA 59.968 40.909 0.00 0.00 42.87 2.41
5197 5650 5.952064 GTCAAGAGTATACGTTGCAAATTCG 59.048 40.000 0.00 3.10 0.00 3.34
5203 5656 5.120053 CACATTGTCAAGAGTATACGTTGCA 59.880 40.000 13.39 11.98 0.00 4.08
5207 5660 6.916440 TGTACACATTGTCAAGAGTATACGT 58.084 36.000 0.00 0.00 0.00 3.57
5254 5707 9.454859 AGGTCTTATAAAAATGAACAGAGGAAG 57.545 33.333 0.00 0.00 0.00 3.46
5255 5708 9.807921 AAGGTCTTATAAAAATGAACAGAGGAA 57.192 29.630 0.00 0.00 0.00 3.36
5256 5709 9.231297 CAAGGTCTTATAAAAATGAACAGAGGA 57.769 33.333 0.00 0.00 0.00 3.71
5257 5710 9.231297 TCAAGGTCTTATAAAAATGAACAGAGG 57.769 33.333 0.00 0.00 0.00 3.69
5269 5722 9.581289 TCTGGAATGTTTTCAAGGTCTTATAAA 57.419 29.630 0.00 0.00 34.17 1.40
5270 5723 9.010029 GTCTGGAATGTTTTCAAGGTCTTATAA 57.990 33.333 0.00 0.00 34.17 0.98
5271 5724 8.160765 TGTCTGGAATGTTTTCAAGGTCTTATA 58.839 33.333 0.00 0.00 34.17 0.98
5272 5725 7.004086 TGTCTGGAATGTTTTCAAGGTCTTAT 58.996 34.615 0.00 0.00 34.17 1.73
5273 5726 6.361433 TGTCTGGAATGTTTTCAAGGTCTTA 58.639 36.000 0.00 0.00 34.17 2.10
5274 5727 5.200483 TGTCTGGAATGTTTTCAAGGTCTT 58.800 37.500 0.00 0.00 34.17 3.01
5275 5728 4.792068 TGTCTGGAATGTTTTCAAGGTCT 58.208 39.130 0.00 0.00 34.17 3.85
5276 5729 5.281727 GTTGTCTGGAATGTTTTCAAGGTC 58.718 41.667 0.00 0.00 34.17 3.85
5277 5730 4.202010 CGTTGTCTGGAATGTTTTCAAGGT 60.202 41.667 0.00 0.00 34.17 3.50
5278 5731 4.202010 ACGTTGTCTGGAATGTTTTCAAGG 60.202 41.667 0.00 0.00 34.17 3.61
5279 5732 4.734854 CACGTTGTCTGGAATGTTTTCAAG 59.265 41.667 0.00 0.00 34.62 3.02
5280 5733 4.667262 CACGTTGTCTGGAATGTTTTCAA 58.333 39.130 0.00 0.00 33.23 2.69
5281 5734 3.488384 GCACGTTGTCTGGAATGTTTTCA 60.488 43.478 0.00 0.00 33.23 2.69
5282 5735 3.042887 GCACGTTGTCTGGAATGTTTTC 58.957 45.455 0.00 0.00 0.00 2.29
5283 5736 2.425312 TGCACGTTGTCTGGAATGTTTT 59.575 40.909 0.00 0.00 0.00 2.43
5284 5737 2.020720 TGCACGTTGTCTGGAATGTTT 58.979 42.857 0.00 0.00 0.00 2.83
5285 5738 1.674359 TGCACGTTGTCTGGAATGTT 58.326 45.000 0.00 0.00 0.00 2.71
5286 5739 1.674359 TTGCACGTTGTCTGGAATGT 58.326 45.000 0.00 0.00 0.00 2.71
5287 5740 2.772568 TTTGCACGTTGTCTGGAATG 57.227 45.000 0.00 0.00 0.00 2.67
5288 5741 2.425312 TGTTTTGCACGTTGTCTGGAAT 59.575 40.909 0.00 0.00 0.00 3.01
5289 5742 1.813178 TGTTTTGCACGTTGTCTGGAA 59.187 42.857 0.00 0.00 0.00 3.53
5290 5743 1.400142 CTGTTTTGCACGTTGTCTGGA 59.600 47.619 0.00 0.00 0.00 3.86
5291 5744 1.826327 CTGTTTTGCACGTTGTCTGG 58.174 50.000 0.00 0.00 0.00 3.86
5292 5745 1.191096 GCTGTTTTGCACGTTGTCTG 58.809 50.000 0.00 0.00 0.00 3.51
5293 5746 0.100503 GGCTGTTTTGCACGTTGTCT 59.899 50.000 0.00 0.00 34.04 3.41
5294 5747 0.100503 AGGCTGTTTTGCACGTTGTC 59.899 50.000 0.00 0.00 34.04 3.18
5295 5748 1.384525 TAGGCTGTTTTGCACGTTGT 58.615 45.000 0.00 0.00 34.04 3.32
5296 5749 2.704725 ATAGGCTGTTTTGCACGTTG 57.295 45.000 0.00 0.00 34.04 4.10
5297 5750 3.726291 AAATAGGCTGTTTTGCACGTT 57.274 38.095 3.12 0.00 34.04 3.99
5298 5751 3.726291 AAAATAGGCTGTTTTGCACGT 57.274 38.095 19.37 0.00 34.04 4.49
5299 5752 5.219633 ACTTAAAATAGGCTGTTTTGCACG 58.780 37.500 26.15 15.63 31.71 5.34
5300 5753 6.478673 ACAACTTAAAATAGGCTGTTTTGCAC 59.521 34.615 26.15 0.00 31.71 4.57
5301 5754 6.578023 ACAACTTAAAATAGGCTGTTTTGCA 58.422 32.000 26.15 14.67 31.71 4.08
5302 5755 6.923508 AGACAACTTAAAATAGGCTGTTTTGC 59.076 34.615 26.15 10.33 31.71 3.68
5303 5756 8.134895 TCAGACAACTTAAAATAGGCTGTTTTG 58.865 33.333 26.15 15.76 31.71 2.44
5304 5757 8.232913 TCAGACAACTTAAAATAGGCTGTTTT 57.767 30.769 22.70 22.70 33.67 2.43
5305 5758 7.817418 TCAGACAACTTAAAATAGGCTGTTT 57.183 32.000 3.12 3.12 0.00 2.83
5306 5759 7.817418 TTCAGACAACTTAAAATAGGCTGTT 57.183 32.000 0.00 0.00 0.00 3.16
5307 5760 7.519970 CGTTTCAGACAACTTAAAATAGGCTGT 60.520 37.037 0.00 0.00 0.00 4.40
5308 5761 6.797033 CGTTTCAGACAACTTAAAATAGGCTG 59.203 38.462 0.00 0.00 0.00 4.85
5309 5762 6.708949 TCGTTTCAGACAACTTAAAATAGGCT 59.291 34.615 0.00 0.00 0.00 4.58
5310 5763 6.894828 TCGTTTCAGACAACTTAAAATAGGC 58.105 36.000 0.00 0.00 0.00 3.93
5319 5772 9.878599 CACTTTTATAATCGTTTCAGACAACTT 57.121 29.630 0.00 0.00 0.00 2.66
5320 5773 9.268268 TCACTTTTATAATCGTTTCAGACAACT 57.732 29.630 0.00 0.00 0.00 3.16
5321 5774 9.872757 TTCACTTTTATAATCGTTTCAGACAAC 57.127 29.630 0.00 0.00 0.00 3.32
5324 5777 9.490663 CCATTCACTTTTATAATCGTTTCAGAC 57.509 33.333 0.00 0.00 0.00 3.51
5325 5778 9.443323 TCCATTCACTTTTATAATCGTTTCAGA 57.557 29.630 0.00 0.00 0.00 3.27
5326 5779 9.708222 CTCCATTCACTTTTATAATCGTTTCAG 57.292 33.333 0.00 0.00 0.00 3.02
5327 5780 8.673711 CCTCCATTCACTTTTATAATCGTTTCA 58.326 33.333 0.00 0.00 0.00 2.69
5328 5781 8.129211 CCCTCCATTCACTTTTATAATCGTTTC 58.871 37.037 0.00 0.00 0.00 2.78
5329 5782 7.832187 TCCCTCCATTCACTTTTATAATCGTTT 59.168 33.333 0.00 0.00 0.00 3.60
5330 5783 7.343357 TCCCTCCATTCACTTTTATAATCGTT 58.657 34.615 0.00 0.00 0.00 3.85
5331 5784 6.895782 TCCCTCCATTCACTTTTATAATCGT 58.104 36.000 0.00 0.00 0.00 3.73
5332 5785 6.992715 ACTCCCTCCATTCACTTTTATAATCG 59.007 38.462 0.00 0.00 0.00 3.34
5333 5786 9.495572 CTACTCCCTCCATTCACTTTTATAATC 57.504 37.037 0.00 0.00 0.00 1.75
5334 5787 7.939588 GCTACTCCCTCCATTCACTTTTATAAT 59.060 37.037 0.00 0.00 0.00 1.28
5335 5788 7.092623 TGCTACTCCCTCCATTCACTTTTATAA 60.093 37.037 0.00 0.00 0.00 0.98
5336 5789 6.385759 TGCTACTCCCTCCATTCACTTTTATA 59.614 38.462 0.00 0.00 0.00 0.98
5337 5790 5.191722 TGCTACTCCCTCCATTCACTTTTAT 59.808 40.000 0.00 0.00 0.00 1.40
5338 5791 4.534500 TGCTACTCCCTCCATTCACTTTTA 59.466 41.667 0.00 0.00 0.00 1.52
5339 5792 3.330701 TGCTACTCCCTCCATTCACTTTT 59.669 43.478 0.00 0.00 0.00 2.27
5340 5793 2.912956 TGCTACTCCCTCCATTCACTTT 59.087 45.455 0.00 0.00 0.00 2.66
5341 5794 2.551270 TGCTACTCCCTCCATTCACTT 58.449 47.619 0.00 0.00 0.00 3.16
5342 5795 2.254152 TGCTACTCCCTCCATTCACT 57.746 50.000 0.00 0.00 0.00 3.41
5343 5796 3.567478 AATGCTACTCCCTCCATTCAC 57.433 47.619 0.00 0.00 0.00 3.18
5344 5797 4.505566 GCATAATGCTACTCCCTCCATTCA 60.506 45.833 0.00 0.00 40.96 2.57
5345 5798 4.006319 GCATAATGCTACTCCCTCCATTC 58.994 47.826 0.00 0.00 40.96 2.67
5346 5799 3.557898 CGCATAATGCTACTCCCTCCATT 60.558 47.826 0.00 0.00 42.25 3.16
5347 5800 2.027745 CGCATAATGCTACTCCCTCCAT 60.028 50.000 0.00 0.00 42.25 3.41
5348 5801 1.344438 CGCATAATGCTACTCCCTCCA 59.656 52.381 0.00 0.00 42.25 3.86
5349 5802 1.941668 GCGCATAATGCTACTCCCTCC 60.942 57.143 0.30 0.00 42.25 4.30
5350 5803 1.270305 TGCGCATAATGCTACTCCCTC 60.270 52.381 5.66 0.00 42.25 4.30
5351 5804 0.758734 TGCGCATAATGCTACTCCCT 59.241 50.000 5.66 0.00 42.25 4.20
5352 5805 0.868406 GTGCGCATAATGCTACTCCC 59.132 55.000 15.91 0.00 42.25 4.30
5353 5806 1.581934 TGTGCGCATAATGCTACTCC 58.418 50.000 15.91 0.00 42.25 3.85
5354 5807 3.885484 ATTGTGCGCATAATGCTACTC 57.115 42.857 28.50 5.98 42.25 2.59
5355 5808 4.212004 CACTATTGTGCGCATAATGCTACT 59.788 41.667 34.11 16.24 37.63 2.57
5356 5809 4.211164 TCACTATTGTGCGCATAATGCTAC 59.789 41.667 34.11 12.48 43.49 3.58
5450 5917 5.714333 TGGCCAATTAATGTACTGTTGATGT 59.286 36.000 0.61 0.00 0.00 3.06
5458 5925 3.117663 ACGGGATGGCCAATTAATGTACT 60.118 43.478 10.96 0.00 35.15 2.73
5466 5933 0.333312 TGGTAACGGGATGGCCAATT 59.667 50.000 10.96 0.00 42.51 2.32
5467 5934 0.333312 TTGGTAACGGGATGGCCAAT 59.667 50.000 10.96 0.00 42.51 3.16
5468 5935 0.333312 ATTGGTAACGGGATGGCCAA 59.667 50.000 10.96 0.00 42.46 4.52
5469 5936 0.333312 AATTGGTAACGGGATGGCCA 59.667 50.000 8.56 8.56 42.51 5.36
5473 5940 1.064952 GGCGAAATTGGTAACGGGATG 59.935 52.381 0.00 0.00 42.51 3.51
5517 5984 1.438651 TCAAGGATGAAAGCGAACCG 58.561 50.000 0.00 0.00 30.99 4.44
5550 6017 7.917003 AGGATGCTACCCAAAATAAAATGTTT 58.083 30.769 0.00 0.00 0.00 2.83
5588 6055 7.826744 TCAAGGTGTGTTCTACATATTGCAATA 59.173 33.333 20.95 20.95 42.24 1.90
5613 6080 5.921962 ATGGGCTCTTAAGGAAACAATTC 57.078 39.130 1.85 0.00 34.66 2.17
5626 6094 1.708341 ACAGTGCAAAATGGGCTCTT 58.292 45.000 0.00 0.00 33.22 2.85
5627 6095 1.708341 AACAGTGCAAAATGGGCTCT 58.292 45.000 0.00 0.00 35.66 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.