Multiple sequence alignment - TraesCS4B01G094800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G094800 chr4B 100.000 2342 0 0 1 2342 97126713 97124372 0.000000e+00 4325.0
1 TraesCS4B01G094800 chr4D 92.836 1703 96 15 91 1781 66565859 66564171 0.000000e+00 2446.0
2 TraesCS4B01G094800 chr4D 95.688 487 19 2 1857 2342 8158403 8158888 0.000000e+00 782.0
3 TraesCS4B01G094800 chr4D 85.859 99 13 1 1 99 66565977 66565880 1.140000e-18 104.0
4 TraesCS4B01G094800 chr4A 92.613 1611 90 15 116 1713 515559314 515557720 0.000000e+00 2289.0
5 TraesCS4B01G094800 chr4A 88.199 161 18 1 1708 1868 515486925 515486766 8.540000e-45 191.0
6 TraesCS4B01G094800 chr4A 83.333 84 6 4 1 79 515559404 515559324 1.160000e-08 71.3
7 TraesCS4B01G094800 chr5D 95.910 489 19 1 1855 2342 45650309 45649821 0.000000e+00 791.0
8 TraesCS4B01G094800 chr7D 95.316 491 22 1 1853 2342 46760916 46761406 0.000000e+00 778.0
9 TraesCS4B01G094800 chr2B 95.417 480 20 2 1851 2329 696078966 696079444 0.000000e+00 763.0
10 TraesCS4B01G094800 chr2D 95.588 476 19 2 1855 2329 557687331 557686857 0.000000e+00 761.0
11 TraesCS4B01G094800 chr6B 94.672 488 26 0 1855 2342 704802498 704802985 0.000000e+00 758.0
12 TraesCS4B01G094800 chr1D 95.378 476 21 1 1855 2329 45395360 45395835 0.000000e+00 756.0
13 TraesCS4B01G094800 chr1D 95.168 476 21 2 1855 2329 431094525 431094051 0.000000e+00 750.0
14 TraesCS4B01G094800 chrUn 95.168 476 22 1 1855 2329 28927282 28927757 0.000000e+00 750.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G094800 chr4B 97124372 97126713 2341 True 4325.00 4325 100.0000 1 2342 1 chr4B.!!$R1 2341
1 TraesCS4B01G094800 chr4D 66564171 66565977 1806 True 1275.00 2446 89.3475 1 1781 2 chr4D.!!$R1 1780
2 TraesCS4B01G094800 chr4A 515557720 515559404 1684 True 1180.15 2289 87.9730 1 1713 2 chr4A.!!$R2 1712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 115 1.00243 CAAGGAAGCACCACTCTAGCA 59.998 52.381 2.96 0.0 42.04 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1899 0.037232 AGTTGCTCTAACACCGCTCC 60.037 55.0 0.0 0.0 41.88 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.823745 ACTGTTAACAATCACAAGGAGAATT 57.176 32.000 10.03 0.00 0.00 2.17
36 37 8.918202 ACTGTTAACAATCACAAGGAGAATTA 57.082 30.769 10.03 0.00 0.00 1.40
68 74 5.174395 AGGAATCAACTAGCGCATCATATC 58.826 41.667 11.47 0.00 0.00 1.63
69 75 4.931601 GGAATCAACTAGCGCATCATATCA 59.068 41.667 11.47 0.00 0.00 2.15
106 112 4.640771 AAATCAAGGAAGCACCACTCTA 57.359 40.909 2.96 0.00 42.04 2.43
107 113 3.902881 ATCAAGGAAGCACCACTCTAG 57.097 47.619 2.96 0.00 42.04 2.43
108 114 1.276421 TCAAGGAAGCACCACTCTAGC 59.724 52.381 2.96 0.00 42.04 3.42
109 115 1.002430 CAAGGAAGCACCACTCTAGCA 59.998 52.381 2.96 0.00 42.04 3.49
110 116 1.352083 AGGAAGCACCACTCTAGCAA 58.648 50.000 2.96 0.00 42.04 3.91
111 117 1.002544 AGGAAGCACCACTCTAGCAAC 59.997 52.381 2.96 0.00 42.04 4.17
112 118 1.270839 GGAAGCACCACTCTAGCAACA 60.271 52.381 0.00 0.00 38.79 3.33
113 119 2.616510 GGAAGCACCACTCTAGCAACAT 60.617 50.000 0.00 0.00 38.79 2.71
183 218 8.305046 TCCATGATCATATGTCGTATCCAATA 57.695 34.615 8.15 0.00 0.00 1.90
213 250 6.611642 ACCATCAATCCTTGTCTAGCTAGTAA 59.388 38.462 20.10 14.82 0.00 2.24
344 381 4.836125 ATACCAATGCGAAATGACCATC 57.164 40.909 0.00 0.00 0.00 3.51
361 398 7.573968 TGACCATCGTATCATCATATCCTAG 57.426 40.000 0.00 0.00 0.00 3.02
362 399 6.039829 TGACCATCGTATCATCATATCCTAGC 59.960 42.308 0.00 0.00 0.00 3.42
382 419 2.474032 GCGTCACCAAAGAACTAATCGC 60.474 50.000 0.00 0.00 0.00 4.58
401 439 1.608801 GCCCCCAAAAACAAGCTGATG 60.609 52.381 0.00 0.00 0.00 3.07
432 474 7.153217 TGACGTGATCAGAAGTACTAAATCA 57.847 36.000 0.00 0.74 31.91 2.57
459 501 7.417612 ACTGTCAAAACAATACATCTGTTGTC 58.582 34.615 0.00 0.00 37.56 3.18
472 514 2.365617 TCTGTTGTCCTTGAGAGGTCAC 59.634 50.000 0.00 0.00 43.97 3.67
495 537 6.968904 CACAGTGCCAAATATTGTCATAGTTC 59.031 38.462 0.00 0.00 0.00 3.01
499 541 9.060347 AGTGCCAAATATTGTCATAGTTCATAG 57.940 33.333 0.00 0.00 0.00 2.23
575 619 7.160049 TCACAAACCAAATCATATTTGCACAT 58.840 30.769 6.82 0.00 35.83 3.21
664 708 2.143122 TCAGAAGCTGTAGGTTTTGCG 58.857 47.619 8.86 0.00 37.49 4.85
712 756 5.221362 TGTCTTGTCTCTGTTCCGTTAATGA 60.221 40.000 0.00 0.00 0.00 2.57
727 774 8.554835 TCCGTTAATGATTTGATAGTGAAACA 57.445 30.769 0.00 0.00 41.43 2.83
743 790 6.694447 AGTGAAACATGATCCATTTTCTTGG 58.306 36.000 0.00 0.00 41.43 3.61
755 802 4.298332 CATTTTCTTGGTGGGACGAAAAG 58.702 43.478 0.00 0.00 38.35 2.27
771 818 7.963465 GGGACGAAAAGAATTAAAAAGAGCTAG 59.037 37.037 0.00 0.00 0.00 3.42
928 981 3.499918 CAGCAAAGAAAACGATGGTCTCT 59.500 43.478 0.00 0.00 0.00 3.10
959 1012 1.566018 GGAAACAGAGCAACCCGACG 61.566 60.000 0.00 0.00 0.00 5.12
1075 1128 4.779733 TCTGCCTCCTCCCGGTCC 62.780 72.222 0.00 0.00 0.00 4.46
1093 1146 2.879070 CTATTGCCGCTGCTGCTCG 61.879 63.158 16.81 4.55 38.71 5.03
1438 1491 0.172803 CGCGAGGTTAGTAGCAAGGT 59.827 55.000 0.00 0.00 0.00 3.50
1446 1499 1.103803 TAGTAGCAAGGTGCCGAGAG 58.896 55.000 0.00 0.00 46.52 3.20
1448 1501 3.356639 TAGCAAGGTGCCGAGAGCG 62.357 63.158 0.00 0.00 46.52 5.03
1460 1513 0.376852 CGAGAGCGTCTTCTCCTGAG 59.623 60.000 7.74 0.00 40.39 3.35
1469 1522 3.366476 CGTCTTCTCCTGAGTAGTTGTGG 60.366 52.174 1.46 0.00 0.00 4.17
1473 1526 3.157881 TCTCCTGAGTAGTTGTGGTCAG 58.842 50.000 0.00 0.00 36.89 3.51
1499 1552 6.731467 AGGGTTGTTGGATTGATATGTTAGT 58.269 36.000 0.00 0.00 0.00 2.24
1518 1571 3.490348 AGTTGGAATGGTTGGAGTTCTG 58.510 45.455 0.00 0.00 0.00 3.02
1527 1580 4.285863 TGGTTGGAGTTCTGGTTGATTTT 58.714 39.130 0.00 0.00 0.00 1.82
1536 1589 6.240894 AGTTCTGGTTGATTTTATCTCAGCA 58.759 36.000 0.00 0.00 0.00 4.41
1555 1609 6.051074 TCAGCACATGTATCTTCCACTTATG 58.949 40.000 0.00 0.00 0.00 1.90
1584 1638 2.008329 AGTTAGCGAGTCCGTCTACTG 58.992 52.381 0.00 0.00 38.24 2.74
1592 1646 1.008329 GTCCGTCTACTGTCTCCTCG 58.992 60.000 0.00 0.00 0.00 4.63
1613 1667 4.641094 TCGGTATTTCTCCTCTCAACTCTC 59.359 45.833 0.00 0.00 0.00 3.20
1617 1671 4.862902 TTTCTCCTCTCAACTCTCACAG 57.137 45.455 0.00 0.00 0.00 3.66
1653 1708 6.532657 ACAAATGAACAAGTTGAGCAAGAAAG 59.467 34.615 10.54 1.11 0.00 2.62
1705 1761 2.771639 CGATCTTGCTCCCGGTCGA 61.772 63.158 0.00 0.00 0.00 4.20
1714 1770 1.801765 GCTCCCGGTCGACAGAATTAC 60.802 57.143 18.91 0.00 0.00 1.89
1741 1797 3.511595 ATGAGTGCAATGCCGCGG 61.512 61.111 24.05 24.05 33.35 6.46
1763 1819 2.227194 GGTGAACTAGGGGTGTGTTTG 58.773 52.381 0.00 0.00 0.00 2.93
1768 1824 3.391799 ACTAGGGGTGTGTTTGGTTTT 57.608 42.857 0.00 0.00 0.00 2.43
1770 1826 1.945580 AGGGGTGTGTTTGGTTTTGT 58.054 45.000 0.00 0.00 0.00 2.83
1771 1827 1.552792 AGGGGTGTGTTTGGTTTTGTG 59.447 47.619 0.00 0.00 0.00 3.33
1773 1829 2.028020 GGGGTGTGTTTGGTTTTGTGAA 60.028 45.455 0.00 0.00 0.00 3.18
1774 1830 3.369997 GGGGTGTGTTTGGTTTTGTGAAT 60.370 43.478 0.00 0.00 0.00 2.57
1775 1831 3.620821 GGGTGTGTTTGGTTTTGTGAATG 59.379 43.478 0.00 0.00 0.00 2.67
1777 1833 4.932200 GGTGTGTTTGGTTTTGTGAATGAA 59.068 37.500 0.00 0.00 0.00 2.57
1778 1834 5.063312 GGTGTGTTTGGTTTTGTGAATGAAG 59.937 40.000 0.00 0.00 0.00 3.02
1779 1835 5.637387 GTGTGTTTGGTTTTGTGAATGAAGT 59.363 36.000 0.00 0.00 0.00 3.01
1780 1836 5.636965 TGTGTTTGGTTTTGTGAATGAAGTG 59.363 36.000 0.00 0.00 0.00 3.16
1781 1837 5.063312 GTGTTTGGTTTTGTGAATGAAGTGG 59.937 40.000 0.00 0.00 0.00 4.00
1782 1838 4.399004 TTGGTTTTGTGAATGAAGTGGG 57.601 40.909 0.00 0.00 0.00 4.61
1783 1839 3.636679 TGGTTTTGTGAATGAAGTGGGA 58.363 40.909 0.00 0.00 0.00 4.37
1784 1840 3.383185 TGGTTTTGTGAATGAAGTGGGAC 59.617 43.478 0.00 0.00 0.00 4.46
1785 1841 3.383185 GGTTTTGTGAATGAAGTGGGACA 59.617 43.478 0.00 0.00 0.00 4.02
1786 1842 4.039124 GGTTTTGTGAATGAAGTGGGACAT 59.961 41.667 0.00 0.00 44.52 3.06
1787 1843 5.453198 GGTTTTGTGAATGAAGTGGGACATT 60.453 40.000 0.00 0.00 44.52 2.71
1788 1844 5.867903 TTTGTGAATGAAGTGGGACATTT 57.132 34.783 0.00 0.00 44.52 2.32
1796 1852 3.593442 AAGTGGGACATTTCACTGGAA 57.407 42.857 0.00 0.00 44.52 3.53
1797 1853 3.814504 AGTGGGACATTTCACTGGAAT 57.185 42.857 0.00 0.00 44.52 3.01
1798 1854 3.424703 AGTGGGACATTTCACTGGAATG 58.575 45.455 8.34 8.34 44.52 2.67
1799 1855 2.493278 GTGGGACATTTCACTGGAATGG 59.507 50.000 13.67 0.00 44.52 3.16
1800 1856 2.378208 TGGGACATTTCACTGGAATGGA 59.622 45.455 13.67 0.00 31.93 3.41
1801 1857 3.011595 TGGGACATTTCACTGGAATGGAT 59.988 43.478 13.67 0.00 31.93 3.41
1802 1858 3.633986 GGGACATTTCACTGGAATGGATC 59.366 47.826 13.67 4.11 31.93 3.36
1813 1869 3.477210 GGAATGGATCCGTTCTTAGCT 57.523 47.619 34.88 9.01 40.65 3.32
1814 1870 3.394719 GGAATGGATCCGTTCTTAGCTC 58.605 50.000 34.88 19.89 40.65 4.09
1815 1871 2.802787 ATGGATCCGTTCTTAGCTCG 57.197 50.000 7.39 0.00 0.00 5.03
1816 1872 0.102481 TGGATCCGTTCTTAGCTCGC 59.898 55.000 7.39 0.00 0.00 5.03
1817 1873 0.935366 GGATCCGTTCTTAGCTCGCG 60.935 60.000 0.00 0.00 0.00 5.87
1818 1874 0.248539 GATCCGTTCTTAGCTCGCGT 60.249 55.000 5.77 0.00 0.00 6.01
1819 1875 0.172803 ATCCGTTCTTAGCTCGCGTT 59.827 50.000 5.77 0.00 0.00 4.84
1820 1876 0.038892 TCCGTTCTTAGCTCGCGTTT 60.039 50.000 5.77 0.00 0.00 3.60
1821 1877 0.093026 CCGTTCTTAGCTCGCGTTTG 59.907 55.000 5.77 0.00 0.00 2.93
1822 1878 0.093026 CGTTCTTAGCTCGCGTTTGG 59.907 55.000 5.77 0.00 0.00 3.28
1823 1879 1.145803 GTTCTTAGCTCGCGTTTGGT 58.854 50.000 5.77 6.23 0.00 3.67
1824 1880 1.529865 GTTCTTAGCTCGCGTTTGGTT 59.470 47.619 5.77 0.00 0.00 3.67
1825 1881 1.144969 TCTTAGCTCGCGTTTGGTTG 58.855 50.000 5.77 1.37 0.00 3.77
1826 1882 0.165944 CTTAGCTCGCGTTTGGTTGG 59.834 55.000 5.77 0.00 0.00 3.77
1827 1883 0.249953 TTAGCTCGCGTTTGGTTGGA 60.250 50.000 5.77 0.00 0.00 3.53
1828 1884 0.669318 TAGCTCGCGTTTGGTTGGAG 60.669 55.000 5.77 0.00 0.00 3.86
1829 1885 1.959226 GCTCGCGTTTGGTTGGAGA 60.959 57.895 5.77 0.00 0.00 3.71
1830 1886 1.298859 GCTCGCGTTTGGTTGGAGAT 61.299 55.000 5.77 0.00 0.00 2.75
1831 1887 2.004583 CTCGCGTTTGGTTGGAGATA 57.995 50.000 5.77 0.00 0.00 1.98
1832 1888 2.550978 CTCGCGTTTGGTTGGAGATAT 58.449 47.619 5.77 0.00 0.00 1.63
1833 1889 2.936498 CTCGCGTTTGGTTGGAGATATT 59.064 45.455 5.77 0.00 0.00 1.28
1834 1890 3.340034 TCGCGTTTGGTTGGAGATATTT 58.660 40.909 5.77 0.00 0.00 1.40
1835 1891 3.126171 TCGCGTTTGGTTGGAGATATTTG 59.874 43.478 5.77 0.00 0.00 2.32
1836 1892 3.126171 CGCGTTTGGTTGGAGATATTTGA 59.874 43.478 0.00 0.00 0.00 2.69
1837 1893 4.201910 CGCGTTTGGTTGGAGATATTTGAT 60.202 41.667 0.00 0.00 0.00 2.57
1838 1894 5.036737 GCGTTTGGTTGGAGATATTTGATG 58.963 41.667 0.00 0.00 0.00 3.07
1839 1895 5.581605 CGTTTGGTTGGAGATATTTGATGG 58.418 41.667 0.00 0.00 0.00 3.51
1840 1896 5.356751 CGTTTGGTTGGAGATATTTGATGGA 59.643 40.000 0.00 0.00 0.00 3.41
1841 1897 6.127758 CGTTTGGTTGGAGATATTTGATGGAA 60.128 38.462 0.00 0.00 0.00 3.53
1842 1898 7.416664 CGTTTGGTTGGAGATATTTGATGGAAT 60.417 37.037 0.00 0.00 0.00 3.01
1843 1899 6.964807 TGGTTGGAGATATTTGATGGAATG 57.035 37.500 0.00 0.00 0.00 2.67
1844 1900 5.834742 TGGTTGGAGATATTTGATGGAATGG 59.165 40.000 0.00 0.00 0.00 3.16
1845 1901 6.070656 GGTTGGAGATATTTGATGGAATGGA 58.929 40.000 0.00 0.00 0.00 3.41
1846 1902 6.208204 GGTTGGAGATATTTGATGGAATGGAG 59.792 42.308 0.00 0.00 0.00 3.86
1847 1903 5.319453 TGGAGATATTTGATGGAATGGAGC 58.681 41.667 0.00 0.00 0.00 4.70
1848 1904 4.394300 GGAGATATTTGATGGAATGGAGCG 59.606 45.833 0.00 0.00 0.00 5.03
1849 1905 4.330250 AGATATTTGATGGAATGGAGCGG 58.670 43.478 0.00 0.00 0.00 5.52
1850 1906 2.442236 ATTTGATGGAATGGAGCGGT 57.558 45.000 0.00 0.00 0.00 5.68
1851 1907 1.462616 TTTGATGGAATGGAGCGGTG 58.537 50.000 0.00 0.00 0.00 4.94
1852 1908 0.327924 TTGATGGAATGGAGCGGTGT 59.672 50.000 0.00 0.00 0.00 4.16
1853 1909 0.327924 TGATGGAATGGAGCGGTGTT 59.672 50.000 0.00 0.00 0.00 3.32
1854 1910 1.557371 TGATGGAATGGAGCGGTGTTA 59.443 47.619 0.00 0.00 0.00 2.41
1855 1911 2.213499 GATGGAATGGAGCGGTGTTAG 58.787 52.381 0.00 0.00 0.00 2.34
1856 1912 1.271856 TGGAATGGAGCGGTGTTAGA 58.728 50.000 0.00 0.00 0.00 2.10
1857 1913 1.207089 TGGAATGGAGCGGTGTTAGAG 59.793 52.381 0.00 0.00 0.00 2.43
1858 1914 1.291132 GAATGGAGCGGTGTTAGAGC 58.709 55.000 0.00 0.00 0.00 4.09
1859 1915 0.613260 AATGGAGCGGTGTTAGAGCA 59.387 50.000 0.00 0.00 0.00 4.26
1860 1916 0.613260 ATGGAGCGGTGTTAGAGCAA 59.387 50.000 0.00 0.00 0.00 3.91
1861 1917 0.320421 TGGAGCGGTGTTAGAGCAAC 60.320 55.000 0.00 0.00 37.67 4.17
1862 1918 0.037232 GGAGCGGTGTTAGAGCAACT 60.037 55.000 0.00 0.00 38.05 3.16
1863 1919 1.351153 GAGCGGTGTTAGAGCAACTC 58.649 55.000 0.00 0.00 38.05 3.01
1864 1920 0.969894 AGCGGTGTTAGAGCAACTCT 59.030 50.000 2.23 2.23 43.83 3.24
1865 1921 2.163815 GAGCGGTGTTAGAGCAACTCTA 59.836 50.000 0.00 0.16 41.50 2.43
1866 1922 2.164624 AGCGGTGTTAGAGCAACTCTAG 59.835 50.000 4.64 0.00 42.92 2.43
1867 1923 2.531206 CGGTGTTAGAGCAACTCTAGC 58.469 52.381 10.50 10.50 42.92 3.42
1868 1924 2.094700 CGGTGTTAGAGCAACTCTAGCA 60.095 50.000 14.73 14.73 46.55 3.49
1871 1927 4.442375 TGTTAGAGCAACTCTAGCAGAC 57.558 45.455 14.73 7.03 44.88 3.51
1872 1928 3.193691 TGTTAGAGCAACTCTAGCAGACC 59.806 47.826 14.73 0.00 44.88 3.85
1873 1929 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
1874 1930 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
1875 1931 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
1876 1932 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
1877 1933 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
1878 1934 0.978146 AACTCTAGCAGACCCCGCAT 60.978 55.000 0.00 0.00 0.00 4.73
1879 1935 1.365633 CTCTAGCAGACCCCGCATC 59.634 63.158 0.00 0.00 0.00 3.91
1880 1936 2.093537 CTCTAGCAGACCCCGCATCC 62.094 65.000 0.00 0.00 0.00 3.51
1881 1937 3.506059 CTAGCAGACCCCGCATCCG 62.506 68.421 0.00 0.00 0.00 4.18
1892 1948 4.481112 GCATCCGGCGCAAACCTG 62.481 66.667 10.83 0.31 0.00 4.00
1893 1949 4.481112 CATCCGGCGCAAACCTGC 62.481 66.667 10.83 0.00 45.75 4.85
1905 1961 3.149436 CAAACCTGCATAATTCCGGTG 57.851 47.619 0.00 0.00 0.00 4.94
1906 1962 2.752354 CAAACCTGCATAATTCCGGTGA 59.248 45.455 0.00 0.00 0.00 4.02
1907 1963 3.297134 AACCTGCATAATTCCGGTGAT 57.703 42.857 0.00 0.00 0.00 3.06
1908 1964 3.297134 ACCTGCATAATTCCGGTGATT 57.703 42.857 0.00 6.20 0.00 2.57
1909 1965 4.431416 ACCTGCATAATTCCGGTGATTA 57.569 40.909 0.00 8.36 0.00 1.75
1910 1966 4.985538 ACCTGCATAATTCCGGTGATTAT 58.014 39.130 15.47 15.47 0.00 1.28
1911 1967 6.121776 ACCTGCATAATTCCGGTGATTATA 57.878 37.500 18.71 9.12 0.00 0.98
1912 1968 5.938125 ACCTGCATAATTCCGGTGATTATAC 59.062 40.000 18.71 15.58 0.00 1.47
1913 1969 5.937540 CCTGCATAATTCCGGTGATTATACA 59.062 40.000 18.71 18.05 0.00 2.29
1914 1970 6.092670 CCTGCATAATTCCGGTGATTATACAG 59.907 42.308 26.31 26.31 34.12 2.74
1915 1971 6.764379 TGCATAATTCCGGTGATTATACAGA 58.236 36.000 18.71 6.90 0.00 3.41
1916 1972 6.649141 TGCATAATTCCGGTGATTATACAGAC 59.351 38.462 18.71 10.82 0.00 3.51
1917 1973 6.874134 GCATAATTCCGGTGATTATACAGACT 59.126 38.462 18.71 2.04 0.00 3.24
1918 1974 7.063544 GCATAATTCCGGTGATTATACAGACTC 59.936 40.741 18.71 5.92 0.00 3.36
1919 1975 4.563337 TTCCGGTGATTATACAGACTCG 57.437 45.455 0.00 0.00 0.00 4.18
1920 1976 2.882761 TCCGGTGATTATACAGACTCGG 59.117 50.000 0.00 0.00 36.70 4.63
1921 1977 2.607282 CCGGTGATTATACAGACTCGGC 60.607 54.545 0.00 0.00 0.00 5.54
1922 1978 2.607282 CGGTGATTATACAGACTCGGCC 60.607 54.545 0.00 0.00 0.00 6.13
1923 1979 2.288886 GGTGATTATACAGACTCGGCCC 60.289 54.545 0.00 0.00 0.00 5.80
1924 1980 2.364324 GTGATTATACAGACTCGGCCCA 59.636 50.000 0.00 0.00 0.00 5.36
1925 1981 3.006967 GTGATTATACAGACTCGGCCCAT 59.993 47.826 0.00 0.00 0.00 4.00
1926 1982 3.646162 TGATTATACAGACTCGGCCCATT 59.354 43.478 0.00 0.00 0.00 3.16
1927 1983 4.102524 TGATTATACAGACTCGGCCCATTT 59.897 41.667 0.00 0.00 0.00 2.32
1928 1984 4.497291 TTATACAGACTCGGCCCATTTT 57.503 40.909 0.00 0.00 0.00 1.82
1929 1985 2.871096 TACAGACTCGGCCCATTTTT 57.129 45.000 0.00 0.00 0.00 1.94
1930 1986 1.534729 ACAGACTCGGCCCATTTTTC 58.465 50.000 0.00 0.00 0.00 2.29
1931 1987 1.073923 ACAGACTCGGCCCATTTTTCT 59.926 47.619 0.00 0.00 0.00 2.52
1932 1988 1.470098 CAGACTCGGCCCATTTTTCTG 59.530 52.381 0.00 0.00 0.00 3.02
1933 1989 0.811281 GACTCGGCCCATTTTTCTGG 59.189 55.000 0.00 0.00 35.95 3.86
1934 1990 1.250840 ACTCGGCCCATTTTTCTGGC 61.251 55.000 0.00 0.00 44.59 4.85
1935 1991 0.967380 CTCGGCCCATTTTTCTGGCT 60.967 55.000 0.00 0.00 44.71 4.75
1936 1992 0.329931 TCGGCCCATTTTTCTGGCTA 59.670 50.000 0.00 0.00 44.71 3.93
1937 1993 0.740737 CGGCCCATTTTTCTGGCTAG 59.259 55.000 0.00 0.00 44.71 3.42
1938 1994 1.681780 CGGCCCATTTTTCTGGCTAGA 60.682 52.381 0.00 0.00 44.71 2.43
1939 1995 1.751351 GGCCCATTTTTCTGGCTAGAC 59.249 52.381 0.00 0.00 44.71 2.59
1940 1996 1.751351 GCCCATTTTTCTGGCTAGACC 59.249 52.381 0.00 0.00 42.01 3.85
1950 2006 3.461773 GCTAGACCAGAGCCCGCA 61.462 66.667 0.00 0.00 33.60 5.69
1951 2007 2.801631 GCTAGACCAGAGCCCGCAT 61.802 63.158 0.00 0.00 33.60 4.73
1952 2008 1.365633 CTAGACCAGAGCCCGCATC 59.634 63.158 0.00 0.00 0.00 3.91
1953 2009 2.413437 CTAGACCAGAGCCCGCATCG 62.413 65.000 0.00 0.00 0.00 3.84
1957 2013 4.457496 CAGAGCCCGCATCGGTGT 62.457 66.667 0.00 0.00 46.80 4.16
1958 2014 4.148825 AGAGCCCGCATCGGTGTC 62.149 66.667 0.00 0.86 46.80 3.67
1969 2025 4.376176 CGGTGTCCGGCCCGTAAA 62.376 66.667 16.10 0.00 44.15 2.01
1970 2026 2.269883 GGTGTCCGGCCCGTAAAT 59.730 61.111 0.85 0.00 0.00 1.40
1971 2027 1.377594 GGTGTCCGGCCCGTAAATT 60.378 57.895 0.85 0.00 0.00 1.82
1972 2028 0.961857 GGTGTCCGGCCCGTAAATTT 60.962 55.000 0.85 0.00 0.00 1.82
1973 2029 0.883153 GTGTCCGGCCCGTAAATTTT 59.117 50.000 0.85 0.00 0.00 1.82
1974 2030 1.270274 GTGTCCGGCCCGTAAATTTTT 59.730 47.619 0.85 0.00 0.00 1.94
1996 2052 4.940593 GCAGCCCGCAAACGCAAA 62.941 61.111 0.00 0.00 41.79 3.68
1997 2053 3.029735 CAGCCCGCAAACGCAAAC 61.030 61.111 0.00 0.00 38.22 2.93
1998 2054 4.279043 AGCCCGCAAACGCAAACC 62.279 61.111 0.00 0.00 38.22 3.27
2000 2056 4.656117 CCCGCAAACGCAAACCCC 62.656 66.667 0.00 0.00 38.22 4.95
2001 2057 4.992294 CCGCAAACGCAAACCCCG 62.992 66.667 0.00 0.00 38.22 5.73
2002 2058 3.955101 CGCAAACGCAAACCCCGA 61.955 61.111 0.00 0.00 0.00 5.14
2003 2059 2.413765 GCAAACGCAAACCCCGAA 59.586 55.556 0.00 0.00 0.00 4.30
2004 2060 1.947146 GCAAACGCAAACCCCGAAC 60.947 57.895 0.00 0.00 0.00 3.95
2005 2061 1.299544 CAAACGCAAACCCCGAACC 60.300 57.895 0.00 0.00 0.00 3.62
2006 2062 1.753463 AAACGCAAACCCCGAACCA 60.753 52.632 0.00 0.00 0.00 3.67
2007 2063 2.007113 AAACGCAAACCCCGAACCAC 62.007 55.000 0.00 0.00 0.00 4.16
2008 2064 2.593436 CGCAAACCCCGAACCACT 60.593 61.111 0.00 0.00 0.00 4.00
2009 2065 1.301874 CGCAAACCCCGAACCACTA 60.302 57.895 0.00 0.00 0.00 2.74
2010 2066 0.675522 CGCAAACCCCGAACCACTAT 60.676 55.000 0.00 0.00 0.00 2.12
2011 2067 1.405797 CGCAAACCCCGAACCACTATA 60.406 52.381 0.00 0.00 0.00 1.31
2012 2068 2.713877 GCAAACCCCGAACCACTATAA 58.286 47.619 0.00 0.00 0.00 0.98
2013 2069 2.421073 GCAAACCCCGAACCACTATAAC 59.579 50.000 0.00 0.00 0.00 1.89
2014 2070 3.871074 GCAAACCCCGAACCACTATAACT 60.871 47.826 0.00 0.00 0.00 2.24
2015 2071 3.622166 AACCCCGAACCACTATAACTG 57.378 47.619 0.00 0.00 0.00 3.16
2016 2072 1.208776 ACCCCGAACCACTATAACTGC 59.791 52.381 0.00 0.00 0.00 4.40
2017 2073 1.567504 CCCGAACCACTATAACTGCG 58.432 55.000 0.00 0.00 0.00 5.18
2018 2074 1.567504 CCGAACCACTATAACTGCGG 58.432 55.000 0.00 0.00 0.00 5.69
2019 2075 1.567504 CGAACCACTATAACTGCGGG 58.432 55.000 0.00 0.00 0.00 6.13
2020 2076 1.134907 CGAACCACTATAACTGCGGGT 60.135 52.381 0.00 0.00 0.00 5.28
2021 2077 2.675889 CGAACCACTATAACTGCGGGTT 60.676 50.000 0.00 0.00 41.05 4.11
2022 2078 3.340928 GAACCACTATAACTGCGGGTTT 58.659 45.455 0.00 0.00 38.64 3.27
2023 2079 2.706890 ACCACTATAACTGCGGGTTTG 58.293 47.619 0.00 0.00 39.17 2.93
2024 2080 1.400494 CCACTATAACTGCGGGTTTGC 59.600 52.381 0.00 0.00 39.17 3.68
2025 2081 1.062002 CACTATAACTGCGGGTTTGCG 59.938 52.381 0.00 0.00 39.17 4.85
2026 2082 0.655733 CTATAACTGCGGGTTTGCGG 59.344 55.000 0.00 0.00 46.83 5.69
2027 2083 0.745128 TATAACTGCGGGTTTGCGGG 60.745 55.000 0.00 0.00 45.70 6.13
2034 2090 3.451894 GGGTTTGCGGGGCAGATG 61.452 66.667 0.00 0.00 40.61 2.90
2035 2091 4.133796 GGTTTGCGGGGCAGATGC 62.134 66.667 0.00 0.00 40.61 3.91
2036 2092 4.481112 GTTTGCGGGGCAGATGCG 62.481 66.667 0.00 0.00 40.61 4.73
2043 2099 4.467084 GGGCAGATGCGGGTCGAA 62.467 66.667 0.00 0.00 43.26 3.71
2044 2100 2.435938 GGCAGATGCGGGTCGAAA 60.436 61.111 0.00 0.00 43.26 3.46
2045 2101 2.750888 GGCAGATGCGGGTCGAAAC 61.751 63.158 0.00 0.00 43.26 2.78
2046 2102 2.750888 GCAGATGCGGGTCGAAACC 61.751 63.158 0.00 0.00 45.65 3.27
2056 2112 0.757512 GGTCGAAACCCTATCCTCCC 59.242 60.000 0.00 0.00 39.93 4.30
2057 2113 0.388294 GTCGAAACCCTATCCTCCCG 59.612 60.000 0.00 0.00 0.00 5.14
2058 2114 1.069258 CGAAACCCTATCCTCCCGC 59.931 63.158 0.00 0.00 0.00 6.13
2059 2115 1.450642 GAAACCCTATCCTCCCGCC 59.549 63.158 0.00 0.00 0.00 6.13
2060 2116 2.379030 GAAACCCTATCCTCCCGCCG 62.379 65.000 0.00 0.00 0.00 6.46
2077 2133 4.796495 GCCGCGTTCCCCTCCAAT 62.796 66.667 4.92 0.00 0.00 3.16
2078 2134 2.045340 CCGCGTTCCCCTCCAATT 60.045 61.111 4.92 0.00 0.00 2.32
2079 2135 2.112815 CCGCGTTCCCCTCCAATTC 61.113 63.158 4.92 0.00 0.00 2.17
2080 2136 2.112815 CGCGTTCCCCTCCAATTCC 61.113 63.158 0.00 0.00 0.00 3.01
2081 2137 1.753078 GCGTTCCCCTCCAATTCCC 60.753 63.158 0.00 0.00 0.00 3.97
2082 2138 1.076995 CGTTCCCCTCCAATTCCCC 60.077 63.158 0.00 0.00 0.00 4.81
2083 2139 1.858739 CGTTCCCCTCCAATTCCCCA 61.859 60.000 0.00 0.00 0.00 4.96
2084 2140 0.324368 GTTCCCCTCCAATTCCCCAC 60.324 60.000 0.00 0.00 0.00 4.61
2085 2141 1.514864 TTCCCCTCCAATTCCCCACC 61.515 60.000 0.00 0.00 0.00 4.61
2086 2142 2.275418 CCCTCCAATTCCCCACCG 59.725 66.667 0.00 0.00 0.00 4.94
2087 2143 2.440247 CCTCCAATTCCCCACCGC 60.440 66.667 0.00 0.00 0.00 5.68
2088 2144 2.824041 CTCCAATTCCCCACCGCG 60.824 66.667 0.00 0.00 0.00 6.46
2102 2158 3.977568 CGCGCCGCTCGATTTCTC 61.978 66.667 7.78 0.00 41.67 2.87
2103 2159 3.977568 GCGCCGCTCGATTTCTCG 61.978 66.667 0.00 0.00 46.41 4.04
2104 2160 3.977568 CGCCGCTCGATTTCTCGC 61.978 66.667 0.00 0.00 44.65 5.03
2105 2161 3.631127 GCCGCTCGATTTCTCGCC 61.631 66.667 0.00 0.00 44.65 5.54
2106 2162 3.323136 CCGCTCGATTTCTCGCCG 61.323 66.667 0.00 0.00 44.65 6.46
2107 2163 3.977568 CGCTCGATTTCTCGCCGC 61.978 66.667 0.00 0.00 44.65 6.53
2108 2164 3.631127 GCTCGATTTCTCGCCGCC 61.631 66.667 0.00 0.00 44.65 6.13
2109 2165 3.323136 CTCGATTTCTCGCCGCCG 61.323 66.667 0.00 0.00 44.65 6.46
2110 2166 4.865761 TCGATTTCTCGCCGCCGG 62.866 66.667 0.00 0.00 44.65 6.13
2124 2180 4.697756 CCGGCGAGCCTTGAACCA 62.698 66.667 9.30 0.00 0.00 3.67
2125 2181 3.423154 CGGCGAGCCTTGAACCAC 61.423 66.667 12.70 0.00 0.00 4.16
2126 2182 3.056328 GGCGAGCCTTGAACCACC 61.056 66.667 6.90 0.00 0.00 4.61
2127 2183 2.281484 GCGAGCCTTGAACCACCA 60.281 61.111 0.00 0.00 0.00 4.17
2128 2184 1.675641 GCGAGCCTTGAACCACCAT 60.676 57.895 0.00 0.00 0.00 3.55
2129 2185 1.926511 GCGAGCCTTGAACCACCATG 61.927 60.000 0.00 0.00 0.00 3.66
2130 2186 1.308069 CGAGCCTTGAACCACCATGG 61.308 60.000 11.19 11.19 45.02 3.66
2131 2187 2.973082 GCCTTGAACCACCATGGC 59.027 61.111 13.04 0.00 45.77 4.40
2132 2188 2.649129 GCCTTGAACCACCATGGCC 61.649 63.158 13.04 0.00 45.98 5.36
2133 2189 2.342650 CCTTGAACCACCATGGCCG 61.343 63.158 13.04 4.10 42.67 6.13
2134 2190 1.303236 CTTGAACCACCATGGCCGA 60.303 57.895 13.04 0.00 42.67 5.54
2135 2191 1.586154 CTTGAACCACCATGGCCGAC 61.586 60.000 13.04 0.44 42.67 4.79
2136 2192 2.063015 TTGAACCACCATGGCCGACT 62.063 55.000 13.04 0.00 42.67 4.18
2137 2193 1.303317 GAACCACCATGGCCGACTT 60.303 57.895 13.04 0.00 42.67 3.01
2138 2194 1.586154 GAACCACCATGGCCGACTTG 61.586 60.000 13.04 0.53 42.67 3.16
2139 2195 2.751436 CCACCATGGCCGACTTGG 60.751 66.667 13.04 7.08 46.90 3.61
2140 2196 2.751436 CACCATGGCCGACTTGGG 60.751 66.667 13.04 5.86 46.05 4.12
2141 2197 4.047125 ACCATGGCCGACTTGGGG 62.047 66.667 13.04 4.62 46.05 4.96
2142 2198 4.820744 CCATGGCCGACTTGGGGG 62.821 72.222 0.00 0.00 39.96 5.40
2143 2199 3.727258 CATGGCCGACTTGGGGGA 61.727 66.667 0.00 0.00 38.63 4.81
2144 2200 2.696125 ATGGCCGACTTGGGGGAT 60.696 61.111 0.00 0.00 38.63 3.85
2145 2201 3.060614 ATGGCCGACTTGGGGGATG 62.061 63.158 0.00 0.00 38.63 3.51
2146 2202 3.407967 GGCCGACTTGGGGGATGA 61.408 66.667 0.00 0.00 38.63 2.92
2147 2203 2.190578 GCCGACTTGGGGGATGAG 59.809 66.667 0.00 0.00 38.63 2.90
2148 2204 2.911143 CCGACTTGGGGGATGAGG 59.089 66.667 0.00 0.00 0.00 3.86
2149 2205 2.190578 CGACTTGGGGGATGAGGC 59.809 66.667 0.00 0.00 0.00 4.70
2150 2206 2.190578 GACTTGGGGGATGAGGCG 59.809 66.667 0.00 0.00 0.00 5.52
2151 2207 3.406595 GACTTGGGGGATGAGGCGG 62.407 68.421 0.00 0.00 0.00 6.13
2152 2208 3.089874 CTTGGGGGATGAGGCGGA 61.090 66.667 0.00 0.00 0.00 5.54
2153 2209 3.089874 TTGGGGGATGAGGCGGAG 61.090 66.667 0.00 0.00 0.00 4.63
2179 2235 4.498520 CCGCGCCAGATCTGACGT 62.499 66.667 28.39 0.00 38.70 4.34
2180 2236 2.951745 CGCGCCAGATCTGACGTC 60.952 66.667 28.39 20.18 38.70 4.34
2181 2237 2.951745 GCGCCAGATCTGACGTCG 60.952 66.667 28.39 21.77 38.70 5.12
2182 2238 2.951745 CGCCAGATCTGACGTCGC 60.952 66.667 24.62 16.42 31.81 5.19
2183 2239 2.951745 GCCAGATCTGACGTCGCG 60.952 66.667 24.62 0.00 0.00 5.87
2184 2240 2.951745 CCAGATCTGACGTCGCGC 60.952 66.667 24.62 0.00 0.00 6.86
2222 2278 4.284550 TGGCTCAACCAGGGTGCC 62.285 66.667 0.00 10.51 46.36 5.01
2225 2281 4.722700 CTCAACCAGGGTGCCCGG 62.723 72.222 0.00 13.85 41.95 5.73
2252 2308 3.607987 GCATTCGACCGACGCGAG 61.608 66.667 15.93 6.19 42.26 5.03
2253 2309 3.607987 CATTCGACCGACGCGAGC 61.608 66.667 15.93 2.83 42.26 5.03
2254 2310 3.812019 ATTCGACCGACGCGAGCT 61.812 61.111 15.93 0.00 42.26 4.09
2255 2311 3.736482 ATTCGACCGACGCGAGCTC 62.736 63.158 15.93 2.73 42.26 4.09
2258 2314 4.239203 GACCGACGCGAGCTCGAT 62.239 66.667 38.74 25.46 43.02 3.59
2259 2315 4.538283 ACCGACGCGAGCTCGATG 62.538 66.667 38.74 29.61 43.02 3.84
2260 2316 4.237809 CCGACGCGAGCTCGATGA 62.238 66.667 38.74 0.00 43.02 2.92
2261 2317 2.720392 CGACGCGAGCTCGATGAG 60.720 66.667 38.74 25.70 43.02 2.90
2262 2318 2.405594 GACGCGAGCTCGATGAGT 59.594 61.111 38.74 28.46 43.02 3.41
2263 2319 1.226435 GACGCGAGCTCGATGAGTT 60.226 57.895 38.74 15.03 43.02 3.01
2264 2320 1.197368 GACGCGAGCTCGATGAGTTC 61.197 60.000 38.74 18.07 43.02 3.01
2309 2365 4.864334 GCCTCATCCGGCCACTGG 62.864 72.222 2.24 0.00 44.41 4.00
2310 2366 3.402681 CCTCATCCGGCCACTGGT 61.403 66.667 2.24 0.00 0.00 4.00
2311 2367 2.187946 CTCATCCGGCCACTGGTC 59.812 66.667 2.24 0.00 0.00 4.02
2312 2368 3.391665 CTCATCCGGCCACTGGTCC 62.392 68.421 2.24 0.00 0.00 4.46
2313 2369 4.838152 CATCCGGCCACTGGTCCG 62.838 72.222 18.76 18.76 40.29 4.79
2326 2382 4.593864 GTCCGCGGGGAGCTCATC 62.594 72.222 27.83 5.02 44.97 2.92
2338 2394 2.969238 CTCATCCGTGGGCGCATC 60.969 66.667 10.83 0.40 36.67 3.91
2339 2395 4.889856 TCATCCGTGGGCGCATCG 62.890 66.667 10.83 12.27 36.67 3.84
2340 2396 4.889856 CATCCGTGGGCGCATCGA 62.890 66.667 21.08 14.01 36.67 3.59
2341 2397 4.592192 ATCCGTGGGCGCATCGAG 62.592 66.667 21.08 13.71 36.67 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.497579 TGCGCTAGTTGATTCCTTTTTATGATA 59.502 33.333 9.73 0.00 0.00 2.15
36 37 6.318648 TGCGCTAGTTGATTCCTTTTTATGAT 59.681 34.615 9.73 0.00 0.00 2.45
40 41 5.645929 TGATGCGCTAGTTGATTCCTTTTTA 59.354 36.000 9.73 0.00 0.00 1.52
46 52 4.931601 TGATATGATGCGCTAGTTGATTCC 59.068 41.667 9.73 0.00 0.00 3.01
81 87 4.218312 AGTGGTGCTTCCTTGATTTTTCT 58.782 39.130 0.80 0.00 37.07 2.52
83 89 4.218312 AGAGTGGTGCTTCCTTGATTTTT 58.782 39.130 0.80 0.00 37.07 1.94
99 105 6.599244 TGATTTCCTTTATGTTGCTAGAGTGG 59.401 38.462 0.00 0.00 0.00 4.00
106 112 5.664294 TGCATGATTTCCTTTATGTTGCT 57.336 34.783 0.00 0.00 0.00 3.91
107 113 6.535865 TCATTGCATGATTTCCTTTATGTTGC 59.464 34.615 0.00 0.00 33.59 4.17
174 209 9.520515 AAGGATTGATGGTAATGTATTGGATAC 57.479 33.333 0.00 0.00 36.29 2.24
267 304 5.400188 GCGTTAAACCAAACAACAGAATACC 59.600 40.000 0.00 0.00 0.00 2.73
273 310 5.412526 TCTAGCGTTAAACCAAACAACAG 57.587 39.130 0.00 0.00 0.00 3.16
275 312 5.754778 ACATCTAGCGTTAAACCAAACAAC 58.245 37.500 0.00 0.00 0.00 3.32
310 347 6.591935 TCGCATTGGTATTTCTTAATCCTCT 58.408 36.000 0.00 0.00 0.00 3.69
344 381 5.267009 GTGACGCTAGGATATGATGATACG 58.733 45.833 0.00 0.00 0.00 3.06
361 398 2.474032 GCGATTAGTTCTTTGGTGACGC 60.474 50.000 0.00 0.00 36.06 5.19
362 399 2.093783 GGCGATTAGTTCTTTGGTGACG 59.906 50.000 0.00 0.00 0.00 4.35
382 419 1.693606 ACATCAGCTTGTTTTTGGGGG 59.306 47.619 0.00 0.00 0.00 5.40
432 474 7.283127 ACAACAGATGTATTGTTTTGACAGTCT 59.717 33.333 1.31 0.00 41.63 3.24
617 661 0.531090 ACGCTGTTGTTGCCGAGTTA 60.531 50.000 0.00 0.00 0.00 2.24
630 674 4.093998 CAGCTTCTGAATCATAAACGCTGT 59.906 41.667 12.93 0.00 37.97 4.40
691 735 6.727824 AATCATTAACGGAACAGAGACAAG 57.272 37.500 0.00 0.00 0.00 3.16
727 774 4.026052 GTCCCACCAAGAAAATGGATCAT 58.974 43.478 0.00 0.00 43.54 2.45
743 790 6.362551 GCTCTTTTTAATTCTTTTCGTCCCAC 59.637 38.462 0.00 0.00 0.00 4.61
755 802 8.343366 CCCGTATTTCCTAGCTCTTTTTAATTC 58.657 37.037 0.00 0.00 0.00 2.17
771 818 1.872653 GCGATCACCTCCCGTATTTCC 60.873 57.143 0.00 0.00 0.00 3.13
877 930 4.378910 GCTTCTTTAAAGAAAACGAAGCGG 59.621 41.667 26.37 14.98 43.84 5.52
928 981 0.825840 CTGTTTCCTCCGGGGCAAAA 60.826 55.000 0.00 0.00 34.39 2.44
959 1012 2.910994 GGCTGCCATGGATGCCTC 60.911 66.667 29.76 13.06 41.92 4.70
1093 1146 2.817396 GAGAAGCGGCAGCCAGAC 60.817 66.667 13.30 0.00 46.67 3.51
1207 1260 3.793144 CGGCTCACTTTCTGGCGC 61.793 66.667 0.00 0.00 42.24 6.53
1446 1499 2.229302 ACAACTACTCAGGAGAAGACGC 59.771 50.000 2.79 0.00 0.00 5.19
1448 1501 3.574826 ACCACAACTACTCAGGAGAAGAC 59.425 47.826 2.79 0.00 0.00 3.01
1451 1504 3.572642 TGACCACAACTACTCAGGAGAA 58.427 45.455 2.79 0.00 0.00 2.87
1460 1513 1.349067 ACCCTCCTGACCACAACTAC 58.651 55.000 0.00 0.00 0.00 2.73
1469 1522 2.162681 CAATCCAACAACCCTCCTGAC 58.837 52.381 0.00 0.00 0.00 3.51
1473 1526 4.536765 ACATATCAATCCAACAACCCTCC 58.463 43.478 0.00 0.00 0.00 4.30
1475 1528 6.731467 ACTAACATATCAATCCAACAACCCT 58.269 36.000 0.00 0.00 0.00 4.34
1499 1552 2.176798 ACCAGAACTCCAACCATTCCAA 59.823 45.455 0.00 0.00 0.00 3.53
1518 1571 6.199937 ACATGTGCTGAGATAAAATCAACC 57.800 37.500 0.00 0.00 0.00 3.77
1527 1580 5.600069 AGTGGAAGATACATGTGCTGAGATA 59.400 40.000 9.11 0.00 0.00 1.98
1584 1638 3.558033 AGAGGAGAAATACCGAGGAGAC 58.442 50.000 0.00 0.00 0.00 3.36
1592 1646 5.186021 TGTGAGAGTTGAGAGGAGAAATACC 59.814 44.000 0.00 0.00 0.00 2.73
1613 1667 6.372381 TGTTCATTTGTATGGTCTCATCTGTG 59.628 38.462 0.00 0.00 34.96 3.66
1617 1671 7.383102 ACTTGTTCATTTGTATGGTCTCATC 57.617 36.000 0.00 0.00 34.96 2.92
1653 1708 1.008538 CACGACCAAAAGCACAGCC 60.009 57.895 0.00 0.00 0.00 4.85
1705 1761 5.104610 ACTCATGAGGATGCAGTAATTCTGT 60.105 40.000 26.08 0.00 45.23 3.41
1714 1770 3.471354 TGCACTCATGAGGATGCAG 57.529 52.632 27.97 12.77 42.92 4.41
1717 1773 1.337071 GGCATTGCACTCATGAGGATG 59.663 52.381 26.08 21.49 0.00 3.51
1741 1797 1.375523 CACACCCCTAGTTCACCGC 60.376 63.158 0.00 0.00 0.00 5.68
1743 1799 2.227194 CAAACACACCCCTAGTTCACC 58.773 52.381 0.00 0.00 0.00 4.02
1744 1800 2.227194 CCAAACACACCCCTAGTTCAC 58.773 52.381 0.00 0.00 0.00 3.18
1763 1819 3.383185 TGTCCCACTTCATTCACAAAACC 59.617 43.478 0.00 0.00 0.00 3.27
1768 1824 4.278170 GTGAAATGTCCCACTTCATTCACA 59.722 41.667 10.00 2.64 35.24 3.58
1770 1826 4.520111 CAGTGAAATGTCCCACTTCATTCA 59.480 41.667 0.00 0.00 41.26 2.57
1771 1827 4.082571 CCAGTGAAATGTCCCACTTCATTC 60.083 45.833 0.00 0.00 41.26 2.67
1773 1829 3.074390 TCCAGTGAAATGTCCCACTTCAT 59.926 43.478 0.00 0.00 41.26 2.57
1774 1830 2.441375 TCCAGTGAAATGTCCCACTTCA 59.559 45.455 0.00 0.00 41.26 3.02
1775 1831 3.140325 TCCAGTGAAATGTCCCACTTC 57.860 47.619 0.00 0.00 41.26 3.01
1777 1833 3.424703 CATTCCAGTGAAATGTCCCACT 58.575 45.455 0.00 0.00 43.73 4.00
1778 1834 2.493278 CCATTCCAGTGAAATGTCCCAC 59.507 50.000 1.12 0.00 33.32 4.61
1779 1835 2.378208 TCCATTCCAGTGAAATGTCCCA 59.622 45.455 1.12 0.00 33.32 4.37
1780 1836 3.085952 TCCATTCCAGTGAAATGTCCC 57.914 47.619 1.12 0.00 33.32 4.46
1781 1837 3.633986 GGATCCATTCCAGTGAAATGTCC 59.366 47.826 6.95 0.00 44.74 4.02
1782 1838 3.313526 CGGATCCATTCCAGTGAAATGTC 59.686 47.826 13.41 0.00 45.78 3.06
1783 1839 3.282021 CGGATCCATTCCAGTGAAATGT 58.718 45.455 13.41 0.00 45.78 2.71
1784 1840 3.282021 ACGGATCCATTCCAGTGAAATG 58.718 45.455 13.41 0.00 45.78 2.32
1785 1841 3.652057 ACGGATCCATTCCAGTGAAAT 57.348 42.857 13.41 0.00 45.78 2.17
1786 1842 3.009033 AGAACGGATCCATTCCAGTGAAA 59.991 43.478 16.74 0.00 45.78 2.69
1787 1843 2.571653 AGAACGGATCCATTCCAGTGAA 59.428 45.455 16.74 0.00 45.78 3.18
1788 1844 2.187958 AGAACGGATCCATTCCAGTGA 58.812 47.619 16.74 0.00 45.78 3.41
1789 1845 2.698855 AGAACGGATCCATTCCAGTG 57.301 50.000 16.74 0.00 45.78 3.66
1790 1846 3.432326 GCTAAGAACGGATCCATTCCAGT 60.432 47.826 16.74 5.69 45.78 4.00
1791 1847 3.134458 GCTAAGAACGGATCCATTCCAG 58.866 50.000 16.74 14.59 45.78 3.86
1792 1848 2.771943 AGCTAAGAACGGATCCATTCCA 59.228 45.455 16.74 4.75 45.78 3.53
1793 1849 3.394719 GAGCTAAGAACGGATCCATTCC 58.605 50.000 16.74 1.85 41.59 3.01
1794 1850 3.053455 CGAGCTAAGAACGGATCCATTC 58.947 50.000 12.71 12.71 0.00 2.67
1795 1851 2.803492 GCGAGCTAAGAACGGATCCATT 60.803 50.000 13.41 1.38 0.00 3.16
1796 1852 1.269831 GCGAGCTAAGAACGGATCCAT 60.270 52.381 13.41 0.00 0.00 3.41
1797 1853 0.102481 GCGAGCTAAGAACGGATCCA 59.898 55.000 13.41 0.00 0.00 3.41
1798 1854 0.935366 CGCGAGCTAAGAACGGATCC 60.935 60.000 0.00 0.00 0.00 3.36
1799 1855 0.248539 ACGCGAGCTAAGAACGGATC 60.249 55.000 15.93 0.00 0.00 3.36
1800 1856 0.172803 AACGCGAGCTAAGAACGGAT 59.827 50.000 15.93 0.00 0.00 4.18
1801 1857 0.038892 AAACGCGAGCTAAGAACGGA 60.039 50.000 15.93 0.00 0.00 4.69
1802 1858 0.093026 CAAACGCGAGCTAAGAACGG 59.907 55.000 15.93 0.00 0.00 4.44
1803 1859 0.093026 CCAAACGCGAGCTAAGAACG 59.907 55.000 15.93 0.00 0.00 3.95
1804 1860 1.145803 ACCAAACGCGAGCTAAGAAC 58.854 50.000 15.93 0.00 0.00 3.01
1805 1861 1.529438 CAACCAAACGCGAGCTAAGAA 59.471 47.619 15.93 0.00 0.00 2.52
1806 1862 1.144969 CAACCAAACGCGAGCTAAGA 58.855 50.000 15.93 0.00 0.00 2.10
1807 1863 0.165944 CCAACCAAACGCGAGCTAAG 59.834 55.000 15.93 0.00 0.00 2.18
1808 1864 0.249953 TCCAACCAAACGCGAGCTAA 60.250 50.000 15.93 0.00 0.00 3.09
1809 1865 0.669318 CTCCAACCAAACGCGAGCTA 60.669 55.000 15.93 0.00 0.00 3.32
1810 1866 1.961277 CTCCAACCAAACGCGAGCT 60.961 57.895 15.93 0.00 0.00 4.09
1811 1867 1.298859 ATCTCCAACCAAACGCGAGC 61.299 55.000 15.93 0.00 0.00 5.03
1812 1868 2.004583 TATCTCCAACCAAACGCGAG 57.995 50.000 15.93 1.33 0.00 5.03
1813 1869 2.684001 ATATCTCCAACCAAACGCGA 57.316 45.000 15.93 0.00 0.00 5.87
1814 1870 3.126171 TCAAATATCTCCAACCAAACGCG 59.874 43.478 3.53 3.53 0.00 6.01
1815 1871 4.695217 TCAAATATCTCCAACCAAACGC 57.305 40.909 0.00 0.00 0.00 4.84
1816 1872 5.356751 TCCATCAAATATCTCCAACCAAACG 59.643 40.000 0.00 0.00 0.00 3.60
1817 1873 6.773976 TCCATCAAATATCTCCAACCAAAC 57.226 37.500 0.00 0.00 0.00 2.93
1818 1874 7.147689 CCATTCCATCAAATATCTCCAACCAAA 60.148 37.037 0.00 0.00 0.00 3.28
1819 1875 6.324512 CCATTCCATCAAATATCTCCAACCAA 59.675 38.462 0.00 0.00 0.00 3.67
1820 1876 5.834742 CCATTCCATCAAATATCTCCAACCA 59.165 40.000 0.00 0.00 0.00 3.67
1821 1877 6.070656 TCCATTCCATCAAATATCTCCAACC 58.929 40.000 0.00 0.00 0.00 3.77
1822 1878 6.294397 GCTCCATTCCATCAAATATCTCCAAC 60.294 42.308 0.00 0.00 0.00 3.77
1823 1879 5.771666 GCTCCATTCCATCAAATATCTCCAA 59.228 40.000 0.00 0.00 0.00 3.53
1824 1880 5.319453 GCTCCATTCCATCAAATATCTCCA 58.681 41.667 0.00 0.00 0.00 3.86
1825 1881 4.394300 CGCTCCATTCCATCAAATATCTCC 59.606 45.833 0.00 0.00 0.00 3.71
1826 1882 4.394300 CCGCTCCATTCCATCAAATATCTC 59.606 45.833 0.00 0.00 0.00 2.75
1827 1883 4.202503 ACCGCTCCATTCCATCAAATATCT 60.203 41.667 0.00 0.00 0.00 1.98
1828 1884 4.074970 ACCGCTCCATTCCATCAAATATC 58.925 43.478 0.00 0.00 0.00 1.63
1829 1885 3.822735 CACCGCTCCATTCCATCAAATAT 59.177 43.478 0.00 0.00 0.00 1.28
1830 1886 3.213506 CACCGCTCCATTCCATCAAATA 58.786 45.455 0.00 0.00 0.00 1.40
1831 1887 2.026641 CACCGCTCCATTCCATCAAAT 58.973 47.619 0.00 0.00 0.00 2.32
1832 1888 1.271871 ACACCGCTCCATTCCATCAAA 60.272 47.619 0.00 0.00 0.00 2.69
1833 1889 0.327924 ACACCGCTCCATTCCATCAA 59.672 50.000 0.00 0.00 0.00 2.57
1834 1890 0.327924 AACACCGCTCCATTCCATCA 59.672 50.000 0.00 0.00 0.00 3.07
1835 1891 2.158957 TCTAACACCGCTCCATTCCATC 60.159 50.000 0.00 0.00 0.00 3.51
1836 1892 1.837439 TCTAACACCGCTCCATTCCAT 59.163 47.619 0.00 0.00 0.00 3.41
1837 1893 1.207089 CTCTAACACCGCTCCATTCCA 59.793 52.381 0.00 0.00 0.00 3.53
1838 1894 1.941325 CTCTAACACCGCTCCATTCC 58.059 55.000 0.00 0.00 0.00 3.01
1839 1895 1.291132 GCTCTAACACCGCTCCATTC 58.709 55.000 0.00 0.00 0.00 2.67
1840 1896 0.613260 TGCTCTAACACCGCTCCATT 59.387 50.000 0.00 0.00 0.00 3.16
1841 1897 0.613260 TTGCTCTAACACCGCTCCAT 59.387 50.000 0.00 0.00 0.00 3.41
1842 1898 0.320421 GTTGCTCTAACACCGCTCCA 60.320 55.000 0.00 0.00 39.16 3.86
1843 1899 0.037232 AGTTGCTCTAACACCGCTCC 60.037 55.000 0.00 0.00 41.88 4.70
1844 1900 1.067495 AGAGTTGCTCTAACACCGCTC 60.067 52.381 0.00 0.00 39.28 5.03
1845 1901 0.969894 AGAGTTGCTCTAACACCGCT 59.030 50.000 0.00 0.00 39.28 5.52
1846 1902 2.531206 CTAGAGTTGCTCTAACACCGC 58.469 52.381 7.22 0.00 41.74 5.68
1847 1903 2.094700 TGCTAGAGTTGCTCTAACACCG 60.095 50.000 7.22 0.00 41.74 4.94
1848 1904 3.193691 TCTGCTAGAGTTGCTCTAACACC 59.806 47.826 7.22 0.00 41.74 4.16
1849 1905 4.170256 GTCTGCTAGAGTTGCTCTAACAC 58.830 47.826 7.22 1.94 41.74 3.32
1850 1906 3.193691 GGTCTGCTAGAGTTGCTCTAACA 59.806 47.826 7.22 7.86 41.74 2.41
1851 1907 3.429684 GGGTCTGCTAGAGTTGCTCTAAC 60.430 52.174 7.22 4.03 41.74 2.34
1852 1908 2.761208 GGGTCTGCTAGAGTTGCTCTAA 59.239 50.000 7.22 0.00 41.74 2.10
1853 1909 2.379972 GGGTCTGCTAGAGTTGCTCTA 58.620 52.381 0.00 5.84 41.50 2.43
1854 1910 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
1855 1911 0.176910 GGGGTCTGCTAGAGTTGCTC 59.823 60.000 0.00 0.00 0.00 4.26
1856 1912 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
1857 1913 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
1858 1914 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
1859 1915 0.978146 ATGCGGGGTCTGCTAGAGTT 60.978 55.000 0.00 0.00 0.00 3.01
1860 1916 1.381872 ATGCGGGGTCTGCTAGAGT 60.382 57.895 0.00 0.00 0.00 3.24
1861 1917 1.365633 GATGCGGGGTCTGCTAGAG 59.634 63.158 0.00 0.00 0.00 2.43
1862 1918 2.134287 GGATGCGGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
1863 1919 2.423446 GGATGCGGGGTCTGCTAG 59.577 66.667 0.30 0.00 0.00 3.42
1864 1920 3.536917 CGGATGCGGGGTCTGCTA 61.537 66.667 0.00 0.00 0.00 3.49
1875 1931 4.481112 CAGGTTTGCGCCGGATGC 62.481 66.667 5.05 9.32 0.00 3.91
1876 1932 4.481112 GCAGGTTTGCGCCGGATG 62.481 66.667 5.05 0.00 41.13 3.51
1885 1941 2.752354 TCACCGGAATTATGCAGGTTTG 59.248 45.455 9.46 0.00 32.04 2.93
1886 1942 3.080300 TCACCGGAATTATGCAGGTTT 57.920 42.857 9.46 0.00 32.04 3.27
1887 1943 2.799126 TCACCGGAATTATGCAGGTT 57.201 45.000 9.46 0.00 32.04 3.50
1888 1944 3.297134 AATCACCGGAATTATGCAGGT 57.703 42.857 9.46 0.00 35.24 4.00
1889 1945 5.937540 TGTATAATCACCGGAATTATGCAGG 59.062 40.000 25.50 0.00 32.14 4.85
1890 1946 6.873605 TCTGTATAATCACCGGAATTATGCAG 59.126 38.462 34.20 34.20 44.67 4.41
1891 1947 6.649141 GTCTGTATAATCACCGGAATTATGCA 59.351 38.462 26.46 26.46 33.84 3.96
1892 1948 6.874134 AGTCTGTATAATCACCGGAATTATGC 59.126 38.462 24.55 23.58 0.00 3.14
1893 1949 7.273598 CGAGTCTGTATAATCACCGGAATTATG 59.726 40.741 24.55 14.80 0.00 1.90
1894 1950 7.313646 CGAGTCTGTATAATCACCGGAATTAT 58.686 38.462 21.87 21.87 0.00 1.28
1895 1951 6.294342 CCGAGTCTGTATAATCACCGGAATTA 60.294 42.308 9.46 12.39 36.86 1.40
1896 1952 5.509163 CCGAGTCTGTATAATCACCGGAATT 60.509 44.000 9.46 10.35 36.86 2.17
1897 1953 4.022242 CCGAGTCTGTATAATCACCGGAAT 60.022 45.833 9.46 0.00 36.86 3.01
1898 1954 3.317149 CCGAGTCTGTATAATCACCGGAA 59.683 47.826 9.46 0.00 36.86 4.30
1899 1955 2.882761 CCGAGTCTGTATAATCACCGGA 59.117 50.000 9.46 0.00 36.86 5.14
1900 1956 2.607282 GCCGAGTCTGTATAATCACCGG 60.607 54.545 0.00 0.00 37.67 5.28
1901 1957 2.607282 GGCCGAGTCTGTATAATCACCG 60.607 54.545 0.00 0.00 0.00 4.94
1902 1958 2.288886 GGGCCGAGTCTGTATAATCACC 60.289 54.545 0.00 0.00 0.00 4.02
1903 1959 2.364324 TGGGCCGAGTCTGTATAATCAC 59.636 50.000 0.00 0.00 0.00 3.06
1904 1960 2.673258 TGGGCCGAGTCTGTATAATCA 58.327 47.619 0.00 0.00 0.00 2.57
1905 1961 3.963428 ATGGGCCGAGTCTGTATAATC 57.037 47.619 0.00 0.00 0.00 1.75
1906 1962 4.706842 AAATGGGCCGAGTCTGTATAAT 57.293 40.909 0.00 0.00 0.00 1.28
1907 1963 4.497291 AAAATGGGCCGAGTCTGTATAA 57.503 40.909 0.00 0.00 0.00 0.98
1908 1964 4.163458 AGAAAAATGGGCCGAGTCTGTATA 59.837 41.667 0.00 0.00 0.00 1.47
1909 1965 3.054361 AGAAAAATGGGCCGAGTCTGTAT 60.054 43.478 0.00 0.00 0.00 2.29
1910 1966 2.304761 AGAAAAATGGGCCGAGTCTGTA 59.695 45.455 0.00 0.00 0.00 2.74
1911 1967 1.073923 AGAAAAATGGGCCGAGTCTGT 59.926 47.619 0.00 0.00 0.00 3.41
1912 1968 1.470098 CAGAAAAATGGGCCGAGTCTG 59.530 52.381 0.00 3.62 0.00 3.51
1913 1969 1.614317 CCAGAAAAATGGGCCGAGTCT 60.614 52.381 0.00 0.00 36.64 3.24
1914 1970 0.811281 CCAGAAAAATGGGCCGAGTC 59.189 55.000 0.00 0.00 36.64 3.36
1915 1971 1.250840 GCCAGAAAAATGGGCCGAGT 61.251 55.000 0.00 0.00 41.90 4.18
1916 1972 1.512694 GCCAGAAAAATGGGCCGAG 59.487 57.895 0.00 0.00 41.90 4.63
1917 1973 3.693411 GCCAGAAAAATGGGCCGA 58.307 55.556 0.00 0.00 41.90 5.54
1921 1977 3.085952 TGGTCTAGCCAGAAAAATGGG 57.914 47.619 2.19 0.00 43.61 4.00
1933 1989 2.707529 GATGCGGGCTCTGGTCTAGC 62.708 65.000 0.00 0.00 39.33 3.42
1934 1990 1.365633 GATGCGGGCTCTGGTCTAG 59.634 63.158 0.00 0.00 0.00 2.43
1935 1991 2.490148 CGATGCGGGCTCTGGTCTA 61.490 63.158 0.00 0.00 0.00 2.59
1936 1992 3.842923 CGATGCGGGCTCTGGTCT 61.843 66.667 0.00 0.00 0.00 3.85
1937 1993 4.899239 CCGATGCGGGCTCTGGTC 62.899 72.222 0.00 0.00 44.15 4.02
1953 2009 0.961857 AAATTTACGGGCCGGACACC 60.962 55.000 31.78 4.67 0.00 4.16
1954 2010 0.883153 AAAATTTACGGGCCGGACAC 59.117 50.000 31.78 0.00 0.00 3.67
1955 2011 1.618487 AAAAATTTACGGGCCGGACA 58.382 45.000 31.78 16.89 0.00 4.02
1986 2042 1.947146 GTTCGGGGTTTGCGTTTGC 60.947 57.895 0.00 0.00 43.20 3.68
1987 2043 1.299544 GGTTCGGGGTTTGCGTTTG 60.300 57.895 0.00 0.00 0.00 2.93
1988 2044 1.753463 TGGTTCGGGGTTTGCGTTT 60.753 52.632 0.00 0.00 0.00 3.60
1989 2045 2.124236 TGGTTCGGGGTTTGCGTT 60.124 55.556 0.00 0.00 0.00 4.84
1990 2046 2.042404 TAGTGGTTCGGGGTTTGCGT 62.042 55.000 0.00 0.00 0.00 5.24
1991 2047 0.675522 ATAGTGGTTCGGGGTTTGCG 60.676 55.000 0.00 0.00 0.00 4.85
1992 2048 2.406596 TATAGTGGTTCGGGGTTTGC 57.593 50.000 0.00 0.00 0.00 3.68
1993 2049 3.687698 CAGTTATAGTGGTTCGGGGTTTG 59.312 47.826 0.00 0.00 0.00 2.93
1994 2050 3.871074 GCAGTTATAGTGGTTCGGGGTTT 60.871 47.826 0.00 0.00 0.00 3.27
1995 2051 2.355412 GCAGTTATAGTGGTTCGGGGTT 60.355 50.000 0.00 0.00 0.00 4.11
1996 2052 1.208776 GCAGTTATAGTGGTTCGGGGT 59.791 52.381 0.00 0.00 0.00 4.95
1997 2053 1.805120 CGCAGTTATAGTGGTTCGGGG 60.805 57.143 0.00 0.00 0.00 5.73
1998 2054 1.567504 CGCAGTTATAGTGGTTCGGG 58.432 55.000 0.00 0.00 0.00 5.14
1999 2055 1.567504 CCGCAGTTATAGTGGTTCGG 58.432 55.000 0.00 0.00 32.04 4.30
2000 2056 1.134907 ACCCGCAGTTATAGTGGTTCG 60.135 52.381 0.00 0.00 34.86 3.95
2001 2057 2.685850 ACCCGCAGTTATAGTGGTTC 57.314 50.000 0.00 0.00 34.86 3.62
2002 2058 3.078837 CAAACCCGCAGTTATAGTGGTT 58.921 45.455 0.00 0.00 37.88 3.67
2003 2059 2.706890 CAAACCCGCAGTTATAGTGGT 58.293 47.619 0.00 0.00 37.88 4.16
2004 2060 1.400494 GCAAACCCGCAGTTATAGTGG 59.600 52.381 0.00 0.00 37.88 4.00
2005 2061 1.062002 CGCAAACCCGCAGTTATAGTG 59.938 52.381 0.00 0.00 37.88 2.74
2006 2062 1.365699 CGCAAACCCGCAGTTATAGT 58.634 50.000 0.00 0.00 37.88 2.12
2007 2063 0.655733 CCGCAAACCCGCAGTTATAG 59.344 55.000 0.00 0.00 37.88 1.31
2008 2064 0.745128 CCCGCAAACCCGCAGTTATA 60.745 55.000 0.00 0.00 37.88 0.98
2009 2065 2.043980 CCCGCAAACCCGCAGTTAT 61.044 57.895 0.00 0.00 37.88 1.89
2010 2066 2.670251 CCCGCAAACCCGCAGTTA 60.670 61.111 0.00 0.00 37.88 2.24
2017 2073 3.451894 CATCTGCCCCGCAAACCC 61.452 66.667 0.00 0.00 38.41 4.11
2018 2074 4.133796 GCATCTGCCCCGCAAACC 62.134 66.667 0.00 0.00 38.41 3.27
2019 2075 4.481112 CGCATCTGCCCCGCAAAC 62.481 66.667 0.00 0.00 38.41 2.93
2026 2082 3.969250 TTTCGACCCGCATCTGCCC 62.969 63.158 0.00 0.00 37.91 5.36
2027 2083 2.435938 TTTCGACCCGCATCTGCC 60.436 61.111 0.00 0.00 37.91 4.85
2028 2084 2.750888 GGTTTCGACCCGCATCTGC 61.751 63.158 0.00 0.00 37.78 4.26
2029 2085 2.106683 GGGTTTCGACCCGCATCTG 61.107 63.158 0.00 0.00 40.59 2.90
2030 2086 2.267961 GGGTTTCGACCCGCATCT 59.732 61.111 0.00 0.00 40.59 2.90
2037 2093 0.757512 GGGAGGATAGGGTTTCGACC 59.242 60.000 0.00 0.00 0.00 4.79
2038 2094 0.388294 CGGGAGGATAGGGTTTCGAC 59.612 60.000 0.00 0.00 0.00 4.20
2039 2095 1.397390 GCGGGAGGATAGGGTTTCGA 61.397 60.000 0.00 0.00 0.00 3.71
2040 2096 1.069258 GCGGGAGGATAGGGTTTCG 59.931 63.158 0.00 0.00 0.00 3.46
2041 2097 1.450642 GGCGGGAGGATAGGGTTTC 59.549 63.158 0.00 0.00 0.00 2.78
2042 2098 2.440817 CGGCGGGAGGATAGGGTTT 61.441 63.158 0.00 0.00 0.00 3.27
2043 2099 2.842936 CGGCGGGAGGATAGGGTT 60.843 66.667 0.00 0.00 0.00 4.11
2063 2119 1.753078 GGGAATTGGAGGGGAACGC 60.753 63.158 0.00 0.00 43.76 4.84
2064 2120 1.076995 GGGGAATTGGAGGGGAACG 60.077 63.158 0.00 0.00 0.00 3.95
2065 2121 0.324368 GTGGGGAATTGGAGGGGAAC 60.324 60.000 0.00 0.00 0.00 3.62
2066 2122 1.514864 GGTGGGGAATTGGAGGGGAA 61.515 60.000 0.00 0.00 0.00 3.97
2067 2123 1.933812 GGTGGGGAATTGGAGGGGA 60.934 63.158 0.00 0.00 0.00 4.81
2068 2124 2.689813 GGTGGGGAATTGGAGGGG 59.310 66.667 0.00 0.00 0.00 4.79
2069 2125 2.275418 CGGTGGGGAATTGGAGGG 59.725 66.667 0.00 0.00 0.00 4.30
2070 2126 2.440247 GCGGTGGGGAATTGGAGG 60.440 66.667 0.00 0.00 0.00 4.30
2071 2127 2.824041 CGCGGTGGGGAATTGGAG 60.824 66.667 0.00 0.00 0.00 3.86
2085 2141 3.977568 GAGAAATCGAGCGGCGCG 61.978 66.667 27.59 20.10 40.61 6.86
2086 2142 3.977568 CGAGAAATCGAGCGGCGC 61.978 66.667 26.86 26.86 40.61 6.53
2087 2143 3.977568 GCGAGAAATCGAGCGGCG 61.978 66.667 0.51 0.51 42.69 6.46
2088 2144 3.631127 GGCGAGAAATCGAGCGGC 61.631 66.667 1.17 0.00 41.85 6.53
2089 2145 3.323136 CGGCGAGAAATCGAGCGG 61.323 66.667 0.00 0.00 34.64 5.52
2090 2146 3.977568 GCGGCGAGAAATCGAGCG 61.978 66.667 12.98 0.00 34.64 5.03
2091 2147 3.631127 GGCGGCGAGAAATCGAGC 61.631 66.667 12.98 5.99 37.49 5.03
2092 2148 3.323136 CGGCGGCGAGAAATCGAG 61.323 66.667 29.19 0.00 34.64 4.04
2093 2149 4.865761 CCGGCGGCGAGAAATCGA 62.866 66.667 34.49 0.00 34.64 3.59
2107 2163 4.697756 TGGTTCAAGGCTCGCCGG 62.698 66.667 0.00 0.00 41.95 6.13
2108 2164 3.423154 GTGGTTCAAGGCTCGCCG 61.423 66.667 1.69 0.00 41.95 6.46
2109 2165 3.056328 GGTGGTTCAAGGCTCGCC 61.056 66.667 0.00 0.00 0.00 5.54
2110 2166 1.675641 ATGGTGGTTCAAGGCTCGC 60.676 57.895 0.00 0.00 0.00 5.03
2111 2167 1.308069 CCATGGTGGTTCAAGGCTCG 61.308 60.000 2.57 0.00 31.35 5.03
2112 2168 1.598701 GCCATGGTGGTTCAAGGCTC 61.599 60.000 14.67 0.00 45.08 4.70
2113 2169 1.607467 GCCATGGTGGTTCAAGGCT 60.607 57.895 14.67 0.00 45.08 4.58
2114 2170 2.973082 GCCATGGTGGTTCAAGGC 59.027 61.111 14.67 0.00 42.94 4.35
2115 2171 2.342650 CGGCCATGGTGGTTCAAGG 61.343 63.158 14.67 0.00 40.46 3.61
2116 2172 1.303236 TCGGCCATGGTGGTTCAAG 60.303 57.895 14.67 0.00 40.46 3.02
2117 2173 1.602323 GTCGGCCATGGTGGTTCAA 60.602 57.895 14.67 0.00 40.46 2.69
2118 2174 2.033448 GTCGGCCATGGTGGTTCA 59.967 61.111 14.67 0.00 40.46 3.18
2119 2175 1.303317 AAGTCGGCCATGGTGGTTC 60.303 57.895 14.67 0.00 40.46 3.62
2120 2176 1.603455 CAAGTCGGCCATGGTGGTT 60.603 57.895 14.67 1.73 40.46 3.67
2121 2177 2.034066 CAAGTCGGCCATGGTGGT 59.966 61.111 14.67 0.00 40.46 4.16
2122 2178 2.751436 CCAAGTCGGCCATGGTGG 60.751 66.667 14.67 8.07 41.55 4.61
2123 2179 2.751436 CCCAAGTCGGCCATGGTG 60.751 66.667 14.67 6.70 32.13 4.17
2124 2180 4.047125 CCCCAAGTCGGCCATGGT 62.047 66.667 14.67 0.00 32.13 3.55
2125 2181 4.820744 CCCCCAAGTCGGCCATGG 62.821 72.222 7.63 7.63 0.00 3.66
2126 2182 3.060614 ATCCCCCAAGTCGGCCATG 62.061 63.158 2.24 0.00 0.00 3.66
2127 2183 2.696125 ATCCCCCAAGTCGGCCAT 60.696 61.111 2.24 0.00 0.00 4.40
2128 2184 3.727258 CATCCCCCAAGTCGGCCA 61.727 66.667 2.24 0.00 0.00 5.36
2129 2185 3.406595 CTCATCCCCCAAGTCGGCC 62.407 68.421 0.00 0.00 0.00 6.13
2130 2186 2.190578 CTCATCCCCCAAGTCGGC 59.809 66.667 0.00 0.00 0.00 5.54
2131 2187 2.911143 CCTCATCCCCCAAGTCGG 59.089 66.667 0.00 0.00 0.00 4.79
2132 2188 2.190578 GCCTCATCCCCCAAGTCG 59.809 66.667 0.00 0.00 0.00 4.18
2133 2189 2.190578 CGCCTCATCCCCCAAGTC 59.809 66.667 0.00 0.00 0.00 3.01
2134 2190 3.411517 CCGCCTCATCCCCCAAGT 61.412 66.667 0.00 0.00 0.00 3.16
2135 2191 3.089874 TCCGCCTCATCCCCCAAG 61.090 66.667 0.00 0.00 0.00 3.61
2136 2192 3.089874 CTCCGCCTCATCCCCCAA 61.090 66.667 0.00 0.00 0.00 4.12
2166 2222 2.951745 CGCGACGTCAGATCTGGC 60.952 66.667 22.42 20.11 0.00 4.85
2167 2223 2.951745 GCGCGACGTCAGATCTGG 60.952 66.667 22.42 9.99 0.00 3.86
2168 2224 3.308008 CGCGCGACGTCAGATCTG 61.308 66.667 28.94 17.07 36.87 2.90
2198 2254 4.980805 TGGTTGAGCCACCGACGC 62.981 66.667 0.00 0.00 43.61 5.19
2199 2255 2.738521 CTGGTTGAGCCACCGACG 60.739 66.667 0.00 0.00 43.61 5.12
2200 2256 2.358737 CCTGGTTGAGCCACCGAC 60.359 66.667 0.00 0.00 43.61 4.79
2201 2257 3.636231 CCCTGGTTGAGCCACCGA 61.636 66.667 0.00 0.00 43.61 4.69
2202 2258 3.953775 ACCCTGGTTGAGCCACCG 61.954 66.667 0.00 0.00 43.61 4.94
2203 2259 2.282462 CACCCTGGTTGAGCCACC 60.282 66.667 0.00 0.00 43.61 4.61
2204 2260 2.985847 GCACCCTGGTTGAGCCAC 60.986 66.667 0.00 0.00 43.61 5.01
2205 2261 4.284550 GGCACCCTGGTTGAGCCA 62.285 66.667 10.43 0.00 46.95 4.75
2235 2291 3.607987 CTCGCGTCGGTCGAATGC 61.608 66.667 5.77 8.25 42.86 3.56
2236 2292 3.607987 GCTCGCGTCGGTCGAATG 61.608 66.667 5.77 0.00 42.86 2.67
2237 2293 3.736482 GAGCTCGCGTCGGTCGAAT 62.736 63.158 5.77 0.00 42.86 3.34
2238 2294 4.456253 GAGCTCGCGTCGGTCGAA 62.456 66.667 5.77 0.00 42.86 3.71
2241 2297 4.239203 ATCGAGCTCGCGTCGGTC 62.239 66.667 30.97 16.26 38.02 4.79
2242 2298 4.538283 CATCGAGCTCGCGTCGGT 62.538 66.667 30.97 7.62 38.02 4.69
2243 2299 4.237809 TCATCGAGCTCGCGTCGG 62.238 66.667 30.97 16.82 38.02 4.79
2244 2300 2.720392 CTCATCGAGCTCGCGTCG 60.720 66.667 30.97 17.70 39.60 5.12
2245 2301 1.197368 GAACTCATCGAGCTCGCGTC 61.197 60.000 30.97 16.02 39.60 5.19
2246 2302 1.226435 GAACTCATCGAGCTCGCGT 60.226 57.895 30.97 20.17 39.60 6.01
2247 2303 3.594762 GAACTCATCGAGCTCGCG 58.405 61.111 30.97 22.96 39.60 5.87
2293 2349 3.391665 GACCAGTGGCCGGATGAGG 62.392 68.421 9.78 1.59 0.00 3.86
2294 2350 2.187946 GACCAGTGGCCGGATGAG 59.812 66.667 9.78 0.00 0.00 2.90
2295 2351 3.399181 GGACCAGTGGCCGGATGA 61.399 66.667 9.78 0.00 0.00 2.92
2296 2352 4.838152 CGGACCAGTGGCCGGATG 62.838 72.222 27.52 8.39 38.21 3.51
2309 2365 4.593864 GATGAGCTCCCCGCGGAC 62.594 72.222 30.73 13.26 45.59 4.79
2313 2369 4.899239 CACGGATGAGCTCCCCGC 62.899 72.222 31.86 12.47 46.54 6.13
2315 2371 3.866582 CCCACGGATGAGCTCCCC 61.867 72.222 12.15 11.57 41.49 4.81
2316 2372 4.554036 GCCCACGGATGAGCTCCC 62.554 72.222 12.15 4.99 41.49 4.30
2317 2373 4.899239 CGCCCACGGATGAGCTCC 62.899 72.222 12.15 0.00 41.07 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.