Multiple sequence alignment - TraesCS4B01G094000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G094000 chr4B 100.000 4199 0 0 1 4199 96635516 96639714 0.000000e+00 7755.0
1 TraesCS4B01G094000 chr4D 96.429 1848 44 8 2372 4199 65935718 65937563 0.000000e+00 3027.0
2 TraesCS4B01G094000 chr4D 93.362 1416 63 17 449 1855 65933722 65935115 0.000000e+00 2065.0
3 TraesCS4B01G094000 chr4D 93.450 458 18 11 1879 2333 65935268 65935716 0.000000e+00 669.0
4 TraesCS4B01G094000 chr4D 83.914 373 59 1 1 372 486431255 486431627 5.160000e-94 355.0
5 TraesCS4B01G094000 chr4A 94.859 1848 58 11 2372 4199 529630569 529628739 0.000000e+00 2852.0
6 TraesCS4B01G094000 chr4A 93.507 1417 68 14 441 1855 529632587 529631193 0.000000e+00 2085.0
7 TraesCS4B01G094000 chr4A 93.275 461 18 11 1879 2336 529631018 529630568 0.000000e+00 667.0
8 TraesCS4B01G094000 chr6D 83.831 402 60 5 16 414 412011595 412011196 1.100000e-100 377.0
9 TraesCS4B01G094000 chr7D 83.969 393 58 4 15 404 6000764 6000374 5.130000e-99 372.0
10 TraesCS4B01G094000 chr7D 82.915 398 61 6 1 394 540374088 540374482 6.680000e-93 351.0
11 TraesCS4B01G094000 chr7D 83.978 362 55 3 7 367 638408661 638408302 1.120000e-90 344.0
12 TraesCS4B01G094000 chr7D 83.379 367 58 3 7 372 34537792 34537428 1.870000e-88 337.0
13 TraesCS4B01G094000 chr2D 82.878 403 67 2 3 404 112307764 112308165 1.110000e-95 361.0
14 TraesCS4B01G094000 chr5D 83.651 367 59 1 7 372 329620699 329620333 1.120000e-90 344.0
15 TraesCS4B01G094000 chr5D 81.795 390 69 2 7 394 299394542 299394153 4.050000e-85 326.0
16 TraesCS4B01G094000 chr7A 84.375 96 8 6 1877 1968 404468617 404468709 2.080000e-13 87.9
17 TraesCS4B01G094000 chr2A 81.319 91 14 2 1877 1965 705530096 705530007 2.090000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G094000 chr4B 96635516 96639714 4198 False 7755.000000 7755 100.000000 1 4199 1 chr4B.!!$F1 4198
1 TraesCS4B01G094000 chr4D 65933722 65937563 3841 False 1920.333333 3027 94.413667 449 4199 3 chr4D.!!$F2 3750
2 TraesCS4B01G094000 chr4A 529628739 529632587 3848 True 1868.000000 2852 93.880333 441 4199 3 chr4A.!!$R1 3758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.030101 GATCCAGCTCGAAGTCGGAG 59.970 60.000 0.11 0.00 40.29 4.63 F
197 198 0.037590 AGAGGAGAGCGTGAGTGAGT 59.962 55.000 0.00 0.00 0.00 3.41 F
262 263 0.176449 ACGTGGGGTCGGTATTAAGC 59.824 55.000 0.00 0.00 34.94 3.09 F
414 415 0.250124 TTTCGTGACGGCCAATGACT 60.250 50.000 4.70 0.00 0.00 3.41 F
418 419 0.517316 GTGACGGCCAATGACTTGAC 59.483 55.000 2.24 0.00 34.04 3.18 F
425 426 0.676782 CCAATGACTTGACGGGACCC 60.677 60.000 0.00 0.00 34.04 4.46 F
485 487 0.914902 AGGGTGCTCCTAGGGTTTCC 60.915 60.000 9.46 7.14 45.98 3.13 F
1518 1526 1.065928 CCATGGTACGTCTCGCCTC 59.934 63.158 2.57 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1220 0.247185 CGTGCCAGAATTTGCCCAAT 59.753 50.000 0.00 0.00 0.00 3.16 R
1368 1376 0.742505 ACGTCTCGAACACCTTCACA 59.257 50.000 0.00 0.00 0.00 3.58 R
2142 2311 1.337447 TGGTACTCCACAAGTAAGCGC 60.337 52.381 0.00 0.00 42.11 5.92 R
2337 2508 3.861276 CACATGTGCACCATTGATTCT 57.139 42.857 13.94 0.00 0.00 2.40 R
2394 2565 4.938575 TTGGGTATGTAGTTGAATGGGT 57.061 40.909 0.00 0.00 0.00 4.51 R
2422 2593 0.249398 ATTTTCGGGACACCTCGAGG 59.751 55.000 30.11 30.11 42.17 4.63 R
2424 2595 1.894466 TGTATTTTCGGGACACCTCGA 59.106 47.619 0.00 0.00 33.28 4.04 R
3207 3382 0.969149 CCACACAGAGCACCAGTAGA 59.031 55.000 0.00 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.496336 GGCGGGGAAGCTGCAGAT 62.496 66.667 20.43 8.90 37.29 2.90
23 24 2.899339 GCGGGGAAGCTGCAGATC 60.899 66.667 20.43 14.53 0.00 2.75
24 25 2.203126 CGGGGAAGCTGCAGATCC 60.203 66.667 23.79 23.79 0.00 3.36
25 26 2.203126 GGGGAAGCTGCAGATCCG 60.203 66.667 24.43 0.00 33.90 4.18
26 27 2.203126 GGGAAGCTGCAGATCCGG 60.203 66.667 24.43 0.00 33.90 5.14
27 28 2.735772 GGGAAGCTGCAGATCCGGA 61.736 63.158 24.43 6.61 33.90 5.14
28 29 1.227497 GGAAGCTGCAGATCCGGAG 60.227 63.158 20.43 0.00 0.00 4.63
31 32 2.588314 GCTGCAGATCCGGAGCTG 60.588 66.667 38.97 38.97 45.95 4.24
35 36 4.247380 CAGATCCGGAGCTGCCCC 62.247 72.222 34.56 5.87 38.05 5.80
57 58 3.319198 TCCACCTTGGACCGCTCC 61.319 66.667 0.00 0.00 42.67 4.70
58 59 3.636231 CCACCTTGGACCGCTCCA 61.636 66.667 0.00 0.00 45.68 3.86
70 71 2.268920 GCTCCAAGGCGATGTGGA 59.731 61.111 0.00 0.00 41.72 4.02
72 73 2.989639 TCCAAGGCGATGTGGAGG 59.010 61.111 0.00 0.00 39.04 4.30
73 74 2.124570 CCAAGGCGATGTGGAGGG 60.125 66.667 0.00 0.00 37.03 4.30
74 75 2.825836 CAAGGCGATGTGGAGGGC 60.826 66.667 0.00 0.00 0.00 5.19
75 76 3.329889 AAGGCGATGTGGAGGGCA 61.330 61.111 0.00 0.00 0.00 5.36
76 77 2.905996 AAGGCGATGTGGAGGGCAA 61.906 57.895 0.00 0.00 0.00 4.52
77 78 2.825836 GGCGATGTGGAGGGCAAG 60.826 66.667 0.00 0.00 0.00 4.01
78 79 3.512516 GCGATGTGGAGGGCAAGC 61.513 66.667 0.00 0.00 0.00 4.01
79 80 2.270205 CGATGTGGAGGGCAAGCT 59.730 61.111 0.00 0.00 0.00 3.74
80 81 1.817099 CGATGTGGAGGGCAAGCTC 60.817 63.158 0.00 0.00 0.00 4.09
81 82 1.300963 GATGTGGAGGGCAAGCTCA 59.699 57.895 0.00 0.00 0.00 4.26
82 83 0.322816 GATGTGGAGGGCAAGCTCAA 60.323 55.000 0.00 0.00 0.00 3.02
83 84 0.112995 ATGTGGAGGGCAAGCTCAAA 59.887 50.000 0.00 0.00 0.00 2.69
84 85 0.538057 TGTGGAGGGCAAGCTCAAAG 60.538 55.000 0.00 0.00 0.00 2.77
85 86 1.604593 TGGAGGGCAAGCTCAAAGC 60.605 57.895 0.00 0.00 42.84 3.51
86 87 2.346541 GGAGGGCAAGCTCAAAGCC 61.347 63.158 10.08 10.08 43.77 4.35
89 90 2.968206 GGCAAGCTCAAAGCCTGG 59.032 61.111 11.00 0.00 43.77 4.45
90 91 1.604593 GGCAAGCTCAAAGCCTGGA 60.605 57.895 11.00 0.00 43.77 3.86
91 92 0.969409 GGCAAGCTCAAAGCCTGGAT 60.969 55.000 11.00 0.00 43.77 3.41
92 93 0.455005 GCAAGCTCAAAGCCTGGATC 59.545 55.000 0.00 0.00 43.77 3.36
93 94 1.101331 CAAGCTCAAAGCCTGGATCC 58.899 55.000 4.20 4.20 43.77 3.36
94 95 0.700564 AAGCTCAAAGCCTGGATCCA 59.299 50.000 15.27 15.27 43.77 3.41
95 96 0.255318 AGCTCAAAGCCTGGATCCAG 59.745 55.000 31.69 31.69 43.77 3.86
96 97 1.382692 GCTCAAAGCCTGGATCCAGC 61.383 60.000 32.97 26.67 42.35 4.85
97 98 0.255318 CTCAAAGCCTGGATCCAGCT 59.745 55.000 32.97 28.22 42.35 4.24
98 99 0.254178 TCAAAGCCTGGATCCAGCTC 59.746 55.000 32.97 25.25 42.35 4.09
99 100 1.094073 CAAAGCCTGGATCCAGCTCG 61.094 60.000 32.97 21.57 42.35 5.03
100 101 1.267574 AAAGCCTGGATCCAGCTCGA 61.268 55.000 32.97 1.24 42.35 4.04
101 102 1.267574 AAGCCTGGATCCAGCTCGAA 61.268 55.000 32.97 0.44 42.35 3.71
102 103 1.227497 GCCTGGATCCAGCTCGAAG 60.227 63.158 32.97 20.21 42.35 3.79
103 104 1.965754 GCCTGGATCCAGCTCGAAGT 61.966 60.000 32.97 0.00 42.35 3.01
104 105 0.103937 CCTGGATCCAGCTCGAAGTC 59.896 60.000 32.97 0.00 42.35 3.01
105 106 0.248825 CTGGATCCAGCTCGAAGTCG 60.249 60.000 28.45 2.18 37.24 4.18
106 107 1.066587 GGATCCAGCTCGAAGTCGG 59.933 63.158 6.95 0.00 40.29 4.79
107 108 1.384989 GGATCCAGCTCGAAGTCGGA 61.385 60.000 6.95 0.00 40.29 4.55
108 109 0.030101 GATCCAGCTCGAAGTCGGAG 59.970 60.000 0.11 0.00 40.29 4.63
109 110 2.010582 ATCCAGCTCGAAGTCGGAGC 62.011 60.000 13.66 13.66 40.31 4.70
110 111 2.578178 CAGCTCGAAGTCGGAGCG 60.578 66.667 14.83 9.29 42.71 5.03
111 112 2.746671 AGCTCGAAGTCGGAGCGA 60.747 61.111 14.83 0.00 42.71 4.93
126 127 4.838486 CGACTGCCGGAGCTCGAC 62.838 72.222 5.05 0.00 42.43 4.20
127 128 3.749064 GACTGCCGGAGCTCGACA 61.749 66.667 5.05 4.72 42.43 4.35
128 129 3.069980 GACTGCCGGAGCTCGACAT 62.070 63.158 5.05 0.00 42.43 3.06
129 130 2.185350 CTGCCGGAGCTCGACATT 59.815 61.111 5.05 0.00 42.43 2.71
130 131 2.125552 TGCCGGAGCTCGACATTG 60.126 61.111 5.05 0.00 42.43 2.82
131 132 3.567797 GCCGGAGCTCGACATTGC 61.568 66.667 5.05 0.00 42.43 3.56
132 133 2.892425 CCGGAGCTCGACATTGCC 60.892 66.667 7.83 0.00 42.43 4.52
133 134 2.892425 CGGAGCTCGACATTGCCC 60.892 66.667 7.83 0.00 42.43 5.36
134 135 2.514824 GGAGCTCGACATTGCCCC 60.515 66.667 7.83 0.00 0.00 5.80
135 136 2.892425 GAGCTCGACATTGCCCCG 60.892 66.667 0.00 0.00 0.00 5.73
136 137 4.473520 AGCTCGACATTGCCCCGG 62.474 66.667 0.00 0.00 0.00 5.73
137 138 4.467084 GCTCGACATTGCCCCGGA 62.467 66.667 0.73 0.00 0.00 5.14
138 139 2.505982 CTCGACATTGCCCCGGAT 59.494 61.111 0.73 0.00 0.00 4.18
139 140 1.889105 CTCGACATTGCCCCGGATG 60.889 63.158 0.73 0.00 0.00 3.51
140 141 3.585990 CGACATTGCCCCGGATGC 61.586 66.667 0.73 5.90 0.00 3.91
141 142 3.585990 GACATTGCCCCGGATGCG 61.586 66.667 0.73 0.00 0.00 4.73
142 143 4.108299 ACATTGCCCCGGATGCGA 62.108 61.111 8.71 5.53 0.00 5.10
143 144 2.595463 CATTGCCCCGGATGCGAT 60.595 61.111 8.71 8.04 33.01 4.58
144 145 2.281761 ATTGCCCCGGATGCGATC 60.282 61.111 8.71 0.00 0.00 3.69
145 146 4.908687 TTGCCCCGGATGCGATCG 62.909 66.667 11.69 11.69 0.00 3.69
158 159 2.661866 GATCGGAATCGGTGCGGG 60.662 66.667 1.60 0.00 42.18 6.13
159 160 4.235762 ATCGGAATCGGTGCGGGG 62.236 66.667 1.60 0.00 42.18 5.73
161 162 4.891727 CGGAATCGGTGCGGGGAG 62.892 72.222 0.00 0.00 37.43 4.30
162 163 3.467226 GGAATCGGTGCGGGGAGA 61.467 66.667 0.00 0.00 0.00 3.71
163 164 2.107141 GAATCGGTGCGGGGAGAG 59.893 66.667 0.00 0.00 0.00 3.20
164 165 3.447025 GAATCGGTGCGGGGAGAGG 62.447 68.421 0.00 0.00 0.00 3.69
165 166 3.976490 AATCGGTGCGGGGAGAGGA 62.976 63.158 0.00 0.00 0.00 3.71
168 169 3.151022 GGTGCGGGGAGAGGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
169 170 3.151022 GTGCGGGGAGAGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
170 171 3.347590 TGCGGGGAGAGGAGAGGA 61.348 66.667 0.00 0.00 0.00 3.71
171 172 2.835895 GCGGGGAGAGGAGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
172 173 2.517402 CGGGGAGAGGAGAGGACG 60.517 72.222 0.00 0.00 0.00 4.79
173 174 3.008408 GGGGAGAGGAGAGGACGA 58.992 66.667 0.00 0.00 0.00 4.20
174 175 1.306970 GGGGAGAGGAGAGGACGAA 59.693 63.158 0.00 0.00 0.00 3.85
175 176 0.753848 GGGGAGAGGAGAGGACGAAG 60.754 65.000 0.00 0.00 0.00 3.79
176 177 1.388837 GGGAGAGGAGAGGACGAAGC 61.389 65.000 0.00 0.00 0.00 3.86
177 178 1.720694 GGAGAGGAGAGGACGAAGCG 61.721 65.000 0.00 0.00 0.00 4.68
178 179 0.745128 GAGAGGAGAGGACGAAGCGA 60.745 60.000 0.00 0.00 0.00 4.93
179 180 0.746563 AGAGGAGAGGACGAAGCGAG 60.747 60.000 0.00 0.00 0.00 5.03
180 181 0.745128 GAGGAGAGGACGAAGCGAGA 60.745 60.000 0.00 0.00 0.00 4.04
181 182 0.746563 AGGAGAGGACGAAGCGAGAG 60.747 60.000 0.00 0.00 0.00 3.20
182 183 1.720694 GGAGAGGACGAAGCGAGAGG 61.721 65.000 0.00 0.00 0.00 3.69
183 184 0.745128 GAGAGGACGAAGCGAGAGGA 60.745 60.000 0.00 0.00 0.00 3.71
184 185 0.746563 AGAGGACGAAGCGAGAGGAG 60.747 60.000 0.00 0.00 0.00 3.69
185 186 0.745128 GAGGACGAAGCGAGAGGAGA 60.745 60.000 0.00 0.00 0.00 3.71
186 187 0.746563 AGGACGAAGCGAGAGGAGAG 60.747 60.000 0.00 0.00 0.00 3.20
187 188 1.063488 GACGAAGCGAGAGGAGAGC 59.937 63.158 0.00 0.00 0.00 4.09
188 189 2.024022 CGAAGCGAGAGGAGAGCG 59.976 66.667 0.00 0.00 35.78 5.03
189 190 2.756025 CGAAGCGAGAGGAGAGCGT 61.756 63.158 0.00 0.00 35.78 5.07
190 191 1.226547 GAAGCGAGAGGAGAGCGTG 60.227 63.158 0.00 0.00 35.78 5.34
191 192 1.649390 GAAGCGAGAGGAGAGCGTGA 61.649 60.000 0.00 0.00 35.78 4.35
192 193 1.653094 AAGCGAGAGGAGAGCGTGAG 61.653 60.000 0.00 0.00 35.78 3.51
193 194 2.403378 GCGAGAGGAGAGCGTGAGT 61.403 63.158 0.00 0.00 0.00 3.41
194 195 1.427419 CGAGAGGAGAGCGTGAGTG 59.573 63.158 0.00 0.00 0.00 3.51
195 196 1.021920 CGAGAGGAGAGCGTGAGTGA 61.022 60.000 0.00 0.00 0.00 3.41
196 197 0.732571 GAGAGGAGAGCGTGAGTGAG 59.267 60.000 0.00 0.00 0.00 3.51
197 198 0.037590 AGAGGAGAGCGTGAGTGAGT 59.962 55.000 0.00 0.00 0.00 3.41
198 199 0.885196 GAGGAGAGCGTGAGTGAGTT 59.115 55.000 0.00 0.00 0.00 3.01
199 200 2.085320 GAGGAGAGCGTGAGTGAGTTA 58.915 52.381 0.00 0.00 0.00 2.24
200 201 2.088423 AGGAGAGCGTGAGTGAGTTAG 58.912 52.381 0.00 0.00 0.00 2.34
201 202 1.133407 GGAGAGCGTGAGTGAGTTAGG 59.867 57.143 0.00 0.00 0.00 2.69
202 203 1.133407 GAGAGCGTGAGTGAGTTAGGG 59.867 57.143 0.00 0.00 0.00 3.53
203 204 0.889306 GAGCGTGAGTGAGTTAGGGT 59.111 55.000 0.00 0.00 0.00 4.34
204 205 1.272769 GAGCGTGAGTGAGTTAGGGTT 59.727 52.381 0.00 0.00 0.00 4.11
205 206 1.692519 AGCGTGAGTGAGTTAGGGTTT 59.307 47.619 0.00 0.00 0.00 3.27
206 207 2.067013 GCGTGAGTGAGTTAGGGTTTC 58.933 52.381 0.00 0.00 0.00 2.78
207 208 2.325761 CGTGAGTGAGTTAGGGTTTCG 58.674 52.381 0.00 0.00 0.00 3.46
208 209 2.685100 GTGAGTGAGTTAGGGTTTCGG 58.315 52.381 0.00 0.00 0.00 4.30
209 210 2.298163 GTGAGTGAGTTAGGGTTTCGGA 59.702 50.000 0.00 0.00 0.00 4.55
210 211 2.561419 TGAGTGAGTTAGGGTTTCGGAG 59.439 50.000 0.00 0.00 0.00 4.63
211 212 1.275573 AGTGAGTTAGGGTTTCGGAGC 59.724 52.381 0.00 0.00 0.00 4.70
212 213 0.245539 TGAGTTAGGGTTTCGGAGCG 59.754 55.000 0.00 0.00 0.00 5.03
213 214 0.529378 GAGTTAGGGTTTCGGAGCGA 59.471 55.000 0.00 0.00 0.00 4.93
214 215 1.136500 GAGTTAGGGTTTCGGAGCGAT 59.864 52.381 0.00 0.00 35.23 4.58
215 216 1.134788 AGTTAGGGTTTCGGAGCGATG 60.135 52.381 0.00 0.00 35.23 3.84
216 217 1.134907 GTTAGGGTTTCGGAGCGATGA 60.135 52.381 0.00 0.00 35.23 2.92
217 218 0.744874 TAGGGTTTCGGAGCGATGAG 59.255 55.000 0.00 0.00 35.23 2.90
230 231 3.705043 GCGATGAGCCAGATGAAATTT 57.295 42.857 0.00 0.00 40.81 1.82
231 232 4.037858 GCGATGAGCCAGATGAAATTTT 57.962 40.909 0.00 0.00 40.81 1.82
232 233 4.427312 GCGATGAGCCAGATGAAATTTTT 58.573 39.130 0.00 0.00 40.81 1.94
248 249 1.384525 TTTTTGTGGGACAGACGTGG 58.615 50.000 0.00 0.00 41.80 4.94
249 250 0.464735 TTTTGTGGGACAGACGTGGG 60.465 55.000 0.00 0.00 41.80 4.61
250 251 2.332312 TTTGTGGGACAGACGTGGGG 62.332 60.000 0.00 0.00 41.80 4.96
251 252 3.239253 GTGGGACAGACGTGGGGT 61.239 66.667 0.00 0.00 41.80 4.95
252 253 2.920912 TGGGACAGACGTGGGGTC 60.921 66.667 0.00 0.00 46.45 4.46
261 262 2.214387 GACGTGGGGTCGGTATTAAG 57.786 55.000 0.00 0.00 35.61 1.85
262 263 0.176449 ACGTGGGGTCGGTATTAAGC 59.824 55.000 0.00 0.00 34.94 3.09
263 264 0.462789 CGTGGGGTCGGTATTAAGCT 59.537 55.000 0.00 0.00 0.00 3.74
264 265 1.805120 CGTGGGGTCGGTATTAAGCTG 60.805 57.143 0.00 0.00 0.00 4.24
265 266 0.834612 TGGGGTCGGTATTAAGCTGG 59.165 55.000 0.00 0.00 0.00 4.85
266 267 1.125633 GGGGTCGGTATTAAGCTGGA 58.874 55.000 0.00 0.00 0.00 3.86
267 268 1.202615 GGGGTCGGTATTAAGCTGGAC 60.203 57.143 0.00 0.00 0.00 4.02
268 269 1.761198 GGGTCGGTATTAAGCTGGACT 59.239 52.381 0.00 0.00 0.00 3.85
269 270 2.169978 GGGTCGGTATTAAGCTGGACTT 59.830 50.000 0.00 0.00 42.76 3.01
270 271 3.195661 GGTCGGTATTAAGCTGGACTTG 58.804 50.000 0.00 0.00 39.58 3.16
271 272 3.369157 GGTCGGTATTAAGCTGGACTTGT 60.369 47.826 0.00 0.00 39.58 3.16
272 273 3.864003 GTCGGTATTAAGCTGGACTTGTC 59.136 47.826 0.00 0.00 39.58 3.18
273 274 3.512329 TCGGTATTAAGCTGGACTTGTCA 59.488 43.478 3.08 0.00 39.58 3.58
274 275 3.865745 CGGTATTAAGCTGGACTTGTCAG 59.134 47.826 3.08 0.00 39.58 3.51
275 276 4.192317 GGTATTAAGCTGGACTTGTCAGG 58.808 47.826 3.08 0.00 39.58 3.86
276 277 2.185004 TTAAGCTGGACTTGTCAGGC 57.815 50.000 3.08 6.18 39.58 4.85
277 278 1.055849 TAAGCTGGACTTGTCAGGCA 58.944 50.000 15.27 0.85 39.58 4.75
278 279 0.250640 AAGCTGGACTTGTCAGGCAG 60.251 55.000 15.27 9.34 37.17 4.85
279 280 1.123861 AGCTGGACTTGTCAGGCAGA 61.124 55.000 15.27 0.00 33.16 4.26
315 316 4.137615 GGCCACCCCATACCCACC 62.138 72.222 0.00 0.00 0.00 4.61
316 317 4.137615 GCCACCCCATACCCACCC 62.138 72.222 0.00 0.00 0.00 4.61
317 318 3.425925 CCACCCCATACCCACCCC 61.426 72.222 0.00 0.00 0.00 4.95
318 319 2.615608 CACCCCATACCCACCCCA 60.616 66.667 0.00 0.00 0.00 4.96
319 320 2.012210 CACCCCATACCCACCCCAT 61.012 63.158 0.00 0.00 0.00 4.00
320 321 0.699577 CACCCCATACCCACCCCATA 60.700 60.000 0.00 0.00 0.00 2.74
321 322 0.276906 ACCCCATACCCACCCCATAT 59.723 55.000 0.00 0.00 0.00 1.78
322 323 1.348160 ACCCCATACCCACCCCATATT 60.348 52.381 0.00 0.00 0.00 1.28
323 324 1.792651 CCCCATACCCACCCCATATTT 59.207 52.381 0.00 0.00 0.00 1.40
324 325 2.492567 CCCCATACCCACCCCATATTTG 60.493 54.545 0.00 0.00 0.00 2.32
325 326 2.492567 CCCATACCCACCCCATATTTGG 60.493 54.545 0.00 0.00 43.23 3.28
338 339 4.338879 CCATATTTGGGCTGGATAAGAGG 58.661 47.826 0.00 0.00 39.56 3.69
339 340 4.338879 CATATTTGGGCTGGATAAGAGGG 58.661 47.826 0.00 0.00 0.00 4.30
340 341 0.926293 TTTGGGCTGGATAAGAGGGG 59.074 55.000 0.00 0.00 0.00 4.79
341 342 0.253630 TTGGGCTGGATAAGAGGGGT 60.254 55.000 0.00 0.00 0.00 4.95
342 343 0.988145 TGGGCTGGATAAGAGGGGTG 60.988 60.000 0.00 0.00 0.00 4.61
343 344 1.149401 GGCTGGATAAGAGGGGTGC 59.851 63.158 0.00 0.00 0.00 5.01
344 345 1.149401 GCTGGATAAGAGGGGTGCC 59.851 63.158 0.00 0.00 0.00 5.01
345 346 1.447643 CTGGATAAGAGGGGTGCCG 59.552 63.158 0.00 0.00 0.00 5.69
346 347 1.002403 TGGATAAGAGGGGTGCCGA 59.998 57.895 0.00 0.00 0.00 5.54
347 348 0.399949 TGGATAAGAGGGGTGCCGAT 60.400 55.000 0.00 0.00 0.00 4.18
348 349 0.321996 GGATAAGAGGGGTGCCGATC 59.678 60.000 0.00 0.00 0.00 3.69
349 350 1.048601 GATAAGAGGGGTGCCGATCA 58.951 55.000 0.00 0.00 0.00 2.92
350 351 1.001406 GATAAGAGGGGTGCCGATCAG 59.999 57.143 0.00 0.00 0.00 2.90
351 352 1.686325 TAAGAGGGGTGCCGATCAGC 61.686 60.000 0.00 0.00 42.24 4.26
356 357 4.864334 GGTGCCGATCAGCCCTGG 62.864 72.222 0.00 0.00 37.22 4.45
374 375 2.436646 CGCTTGAGGCCCGTTCAT 60.437 61.111 0.00 0.00 37.74 2.57
375 376 2.753966 CGCTTGAGGCCCGTTCATG 61.754 63.158 0.00 0.02 37.74 3.07
376 377 2.409870 GCTTGAGGCCCGTTCATGG 61.410 63.158 0.00 0.00 34.27 3.66
393 394 4.770874 GCGCCCGCCTAGGTCAAA 62.771 66.667 11.31 0.00 38.74 2.69
394 395 2.189521 CGCCCGCCTAGGTCAAAT 59.810 61.111 11.31 0.00 38.74 2.32
395 396 1.451387 CGCCCGCCTAGGTCAAATT 60.451 57.895 11.31 0.00 38.74 1.82
396 397 1.029947 CGCCCGCCTAGGTCAAATTT 61.030 55.000 11.31 0.00 38.74 1.82
397 398 1.182667 GCCCGCCTAGGTCAAATTTT 58.817 50.000 11.31 0.00 38.74 1.82
398 399 1.134367 GCCCGCCTAGGTCAAATTTTC 59.866 52.381 11.31 0.00 38.74 2.29
399 400 1.400494 CCCGCCTAGGTCAAATTTTCG 59.600 52.381 11.31 1.52 38.74 3.46
400 401 2.081462 CCGCCTAGGTCAAATTTTCGT 58.919 47.619 11.31 0.00 34.51 3.85
401 402 2.159572 CCGCCTAGGTCAAATTTTCGTG 60.160 50.000 11.31 0.00 34.51 4.35
402 403 2.739913 CGCCTAGGTCAAATTTTCGTGA 59.260 45.455 11.31 0.00 0.00 4.35
403 404 3.424433 CGCCTAGGTCAAATTTTCGTGAC 60.424 47.826 11.31 0.19 42.83 3.67
404 405 3.424433 GCCTAGGTCAAATTTTCGTGACG 60.424 47.826 11.31 0.00 44.19 4.35
405 406 3.124636 CCTAGGTCAAATTTTCGTGACGG 59.875 47.826 4.70 0.00 44.19 4.79
406 407 1.265905 AGGTCAAATTTTCGTGACGGC 59.734 47.619 4.70 0.00 44.19 5.68
407 408 1.664874 GGTCAAATTTTCGTGACGGCC 60.665 52.381 4.70 0.00 44.19 6.13
408 409 1.002251 GTCAAATTTTCGTGACGGCCA 60.002 47.619 4.70 0.00 35.22 5.36
409 410 1.676529 TCAAATTTTCGTGACGGCCAA 59.323 42.857 4.70 0.00 0.00 4.52
410 411 2.294791 TCAAATTTTCGTGACGGCCAAT 59.705 40.909 4.70 0.00 0.00 3.16
411 412 2.346099 AATTTTCGTGACGGCCAATG 57.654 45.000 4.70 0.00 0.00 2.82
412 413 1.529226 ATTTTCGTGACGGCCAATGA 58.471 45.000 4.70 0.00 0.00 2.57
413 414 0.589223 TTTTCGTGACGGCCAATGAC 59.411 50.000 4.70 0.00 0.00 3.06
414 415 0.250124 TTTCGTGACGGCCAATGACT 60.250 50.000 4.70 0.00 0.00 3.41
415 416 0.250124 TTCGTGACGGCCAATGACTT 60.250 50.000 4.70 0.00 0.00 3.01
416 417 0.948623 TCGTGACGGCCAATGACTTG 60.949 55.000 4.70 0.00 0.00 3.16
417 418 0.948623 CGTGACGGCCAATGACTTGA 60.949 55.000 2.24 0.00 34.04 3.02
418 419 0.517316 GTGACGGCCAATGACTTGAC 59.483 55.000 2.24 0.00 34.04 3.18
419 420 0.948623 TGACGGCCAATGACTTGACG 60.949 55.000 2.24 0.00 38.03 4.35
420 421 1.635663 GACGGCCAATGACTTGACGG 61.636 60.000 2.24 0.00 37.08 4.79
421 422 2.398554 CGGCCAATGACTTGACGGG 61.399 63.158 2.24 0.00 34.04 5.28
422 423 1.002624 GGCCAATGACTTGACGGGA 60.003 57.895 0.00 0.00 34.04 5.14
423 424 1.305930 GGCCAATGACTTGACGGGAC 61.306 60.000 0.00 0.00 34.04 4.46
424 425 1.305930 GCCAATGACTTGACGGGACC 61.306 60.000 0.00 0.00 34.04 4.46
425 426 0.676782 CCAATGACTTGACGGGACCC 60.677 60.000 0.00 0.00 34.04 4.46
445 446 2.962253 GCGTCCGGCTGTAGATGC 60.962 66.667 0.00 0.93 39.11 3.91
447 448 1.299468 CGTCCGGCTGTAGATGCTC 60.299 63.158 0.00 0.00 0.00 4.26
485 487 0.914902 AGGGTGCTCCTAGGGTTTCC 60.915 60.000 9.46 7.14 45.98 3.13
496 498 4.164221 TCCTAGGGTTTCCATGCTAAAGAG 59.836 45.833 9.46 0.00 34.83 2.85
508 510 4.098055 TGCTAAAGAGTAGAACGCTCTG 57.902 45.455 0.00 0.00 41.96 3.35
514 516 1.135139 GAGTAGAACGCTCTGGATGCA 59.865 52.381 0.00 0.00 32.70 3.96
565 567 1.211709 GGTGAATCGGGCGTTTTGG 59.788 57.895 0.00 0.00 0.00 3.28
578 580 2.555199 CGTTTTGGGTGGATGCAAAAA 58.445 42.857 0.00 0.00 0.00 1.94
626 630 7.507616 ACCAAACAACTCATATCCCTGTAAAAA 59.492 33.333 0.00 0.00 0.00 1.94
669 673 4.339530 GCCCTCCAAATAATCAAAGAGTCC 59.660 45.833 0.00 0.00 0.00 3.85
707 711 9.083080 GTAATCGCTTTGCTACCAAATTTTATT 57.917 29.630 0.00 0.00 39.98 1.40
770 774 5.547465 TCCTGCGACTTCTAAAAATCTTCA 58.453 37.500 0.00 0.00 0.00 3.02
817 821 9.507280 CCTTCACATTTACTAGCAAAATATGTG 57.493 33.333 11.86 11.86 0.00 3.21
878 882 4.635765 TCCAGCTAAAGATTCCAATTCACG 59.364 41.667 0.00 0.00 0.00 4.35
1000 1004 4.104086 TCCCTTGCTATTCTTCCTCTTCA 58.896 43.478 0.00 0.00 0.00 3.02
1006 1010 5.215069 TGCTATTCTTCCTCTTCATCCTCT 58.785 41.667 0.00 0.00 0.00 3.69
1059 1067 3.013921 TCCACACGATAGAAAAATGGCC 58.986 45.455 0.00 0.00 41.38 5.36
1060 1068 2.223249 CCACACGATAGAAAAATGGCCG 60.223 50.000 0.00 0.00 41.38 6.13
1212 1220 3.731728 GCCACCCTGATGAGCCCA 61.732 66.667 0.00 0.00 0.00 5.36
1491 1499 1.589993 CTGTGGATCGCAGCCTACG 60.590 63.158 3.48 0.00 35.20 3.51
1516 1524 2.585247 GCCATGGTACGTCTCGCC 60.585 66.667 14.67 0.00 0.00 5.54
1517 1525 3.077519 GCCATGGTACGTCTCGCCT 62.078 63.158 14.67 0.00 0.00 5.52
1518 1526 1.065928 CCATGGTACGTCTCGCCTC 59.934 63.158 2.57 0.00 0.00 4.70
1574 1582 7.230849 TGTGTTTTTCCTGCAAAGATATCAT 57.769 32.000 5.32 0.00 0.00 2.45
1699 1708 9.796120 TTAACAAAAGTACACCTCATGAAAAAG 57.204 29.630 0.00 0.00 0.00 2.27
1738 1747 9.842775 AAGATCATGTAGAATCTGCATTTTAGA 57.157 29.630 11.12 6.36 34.76 2.10
1769 1786 9.527566 CTTTGATTAACATTATTTGCAAAACGG 57.472 29.630 17.19 8.76 0.00 4.44
1770 1787 8.818141 TTGATTAACATTATTTGCAAAACGGA 57.182 26.923 17.19 2.88 0.00 4.69
1771 1788 8.994429 TGATTAACATTATTTGCAAAACGGAT 57.006 26.923 17.19 1.30 0.00 4.18
1772 1789 8.867935 TGATTAACATTATTTGCAAAACGGATG 58.132 29.630 17.19 17.77 0.00 3.51
1773 1790 8.994429 ATTAACATTATTTGCAAAACGGATGA 57.006 26.923 17.19 0.00 0.00 2.92
1774 1791 8.818141 TTAACATTATTTGCAAAACGGATGAA 57.182 26.923 17.19 3.81 0.00 2.57
1775 1792 7.903995 AACATTATTTGCAAAACGGATGAAT 57.096 28.000 17.19 9.34 0.00 2.57
1776 1793 8.994429 AACATTATTTGCAAAACGGATGAATA 57.006 26.923 17.19 0.00 0.00 1.75
1777 1794 8.633075 ACATTATTTGCAAAACGGATGAATAG 57.367 30.769 17.19 0.00 0.00 1.73
1778 1795 8.465999 ACATTATTTGCAAAACGGATGAATAGA 58.534 29.630 17.19 0.00 0.00 1.98
1779 1796 9.299963 CATTATTTGCAAAACGGATGAATAGAA 57.700 29.630 17.19 0.00 0.00 2.10
1780 1797 9.868277 ATTATTTGCAAAACGGATGAATAGAAA 57.132 25.926 17.19 0.00 0.00 2.52
1781 1798 9.698309 TTATTTGCAAAACGGATGAATAGAAAA 57.302 25.926 17.19 0.00 0.00 2.29
1782 1799 8.600449 ATTTGCAAAACGGATGAATAGAAAAA 57.400 26.923 17.19 0.00 0.00 1.94
1814 1831 6.971726 ATCAGTGTCATGGCATATTGAAAT 57.028 33.333 1.89 0.00 0.00 2.17
1833 1850 9.658799 ATTGAAATCTACTGGATTATATGGTCG 57.341 33.333 0.00 0.00 43.17 4.79
1948 2116 8.981659 CCTCCAAAATTCCTATACAATTCCTTT 58.018 33.333 0.00 0.00 0.00 3.11
1987 2156 8.940952 GCCTAATAATGTTCCATATTCTCAGTC 58.059 37.037 0.00 0.00 0.00 3.51
2022 2191 9.703892 TGTTTACTTGGGATGTTAATTTCATTG 57.296 29.630 0.00 0.00 0.00 2.82
2054 2223 4.082571 ACAATAGCTTGGAAGTGTTGATGC 60.083 41.667 0.00 0.00 36.64 3.91
2158 2327 1.873591 CTTTGCGCTTACTTGTGGAGT 59.126 47.619 9.73 0.00 42.55 3.85
2244 2414 4.041567 TCACACTCATCAACTACACCCAAT 59.958 41.667 0.00 0.00 0.00 3.16
2245 2415 5.247337 TCACACTCATCAACTACACCCAATA 59.753 40.000 0.00 0.00 0.00 1.90
2246 2416 5.937540 CACACTCATCAACTACACCCAATAA 59.062 40.000 0.00 0.00 0.00 1.40
2247 2417 5.938125 ACACTCATCAACTACACCCAATAAC 59.062 40.000 0.00 0.00 0.00 1.89
2248 2418 6.173339 CACTCATCAACTACACCCAATAACT 58.827 40.000 0.00 0.00 0.00 2.24
2250 2420 7.822334 CACTCATCAACTACACCCAATAACTTA 59.178 37.037 0.00 0.00 0.00 2.24
2251 2421 8.548877 ACTCATCAACTACACCCAATAACTTAT 58.451 33.333 0.00 0.00 0.00 1.73
2252 2422 8.958119 TCATCAACTACACCCAATAACTTATC 57.042 34.615 0.00 0.00 0.00 1.75
2253 2423 7.990886 TCATCAACTACACCCAATAACTTATCC 59.009 37.037 0.00 0.00 0.00 2.59
2257 2427 3.788937 ACACCCAATAACTTATCCGTCG 58.211 45.455 0.00 0.00 0.00 5.12
2333 2504 5.895636 TGGCGAATGTCAAATAAATCACT 57.104 34.783 0.00 0.00 0.00 3.41
2334 2505 6.993786 TGGCGAATGTCAAATAAATCACTA 57.006 33.333 0.00 0.00 0.00 2.74
2335 2506 7.566760 TGGCGAATGTCAAATAAATCACTAT 57.433 32.000 0.00 0.00 0.00 2.12
2336 2507 8.669946 TGGCGAATGTCAAATAAATCACTATA 57.330 30.769 0.00 0.00 0.00 1.31
2337 2508 9.114952 TGGCGAATGTCAAATAAATCACTATAA 57.885 29.630 0.00 0.00 0.00 0.98
2338 2509 9.599322 GGCGAATGTCAAATAAATCACTATAAG 57.401 33.333 0.00 0.00 0.00 1.73
2351 2522 8.523915 AAATCACTATAAGAATCAATGGTGCA 57.476 30.769 7.06 0.00 35.31 4.57
2352 2523 6.925610 TCACTATAAGAATCAATGGTGCAC 57.074 37.500 8.80 8.80 35.31 4.57
2353 2524 6.413892 TCACTATAAGAATCAATGGTGCACA 58.586 36.000 20.43 5.24 35.31 4.57
2354 2525 7.056006 TCACTATAAGAATCAATGGTGCACAT 58.944 34.615 20.43 7.56 43.07 3.21
2355 2526 7.012610 TCACTATAAGAATCAATGGTGCACATG 59.987 37.037 20.43 14.14 40.44 3.21
2356 2527 6.830324 ACTATAAGAATCAATGGTGCACATGT 59.170 34.615 20.43 0.00 40.44 3.21
2357 2528 3.861276 AGAATCAATGGTGCACATGTG 57.139 42.857 21.83 21.83 40.44 3.21
2394 2565 9.276590 GATATCATTGTGAATAGGTGATGTTCA 57.723 33.333 0.00 0.00 36.75 3.18
2453 2628 1.396996 CCCGAAAATACAACTCCTGCG 59.603 52.381 0.00 0.00 0.00 5.18
2473 2648 4.168760 GCGTACGTACAGATAAAACACCT 58.831 43.478 24.50 0.00 0.00 4.00
2523 2698 6.808008 ACAAATCTGCACATATATACCAGC 57.192 37.500 0.00 0.00 0.00 4.85
2546 2721 5.276963 GCTAGGTAGATATAGCGAGCGTAAG 60.277 48.000 14.36 0.00 36.71 2.34
2562 2737 6.074782 CGAGCGTAAGAATCAGGAAGATTAAC 60.075 42.308 0.00 0.00 46.76 2.01
2568 2743 7.651027 AAGAATCAGGAAGATTAACAATGGG 57.349 36.000 0.00 0.00 46.76 4.00
2651 2826 1.198759 AGCCTTACCGGTGATGGTGT 61.199 55.000 19.93 5.55 43.68 4.16
2784 2959 2.593956 AACGGAGGCCAAGGAGTCC 61.594 63.158 5.01 0.00 0.00 3.85
2787 2962 2.726351 GGAGGCCAAGGAGTCCGAG 61.726 68.421 5.01 0.00 0.00 4.63
3196 3371 1.636148 AGGCGGGCCGAGTAATAATA 58.364 50.000 33.44 0.00 41.95 0.98
3207 3382 7.362315 GGGCCGAGTAATAATAAAGTGTTTTGT 60.362 37.037 0.00 0.00 0.00 2.83
3247 3423 6.177610 GTGGGATGTGTCTTTTTCCATACTA 58.822 40.000 0.00 0.00 0.00 1.82
3535 3727 4.012374 ACAGACACATGATTTCACCATCC 58.988 43.478 0.00 0.00 0.00 3.51
3573 3765 4.441087 GTCAATGGAAAAGAAGCAAACGAC 59.559 41.667 0.00 0.00 0.00 4.34
3686 3878 4.171878 TCTACAGAGTAGGCAGCATAGT 57.828 45.455 0.00 0.00 0.00 2.12
3815 4007 5.277825 CCGCTTCACAAGAATTAAACAACA 58.722 37.500 0.00 0.00 32.31 3.33
4029 4222 6.432107 ACGTATTCACTGCGTTAAACAAAAT 58.568 32.000 0.00 0.00 44.15 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.496336 ATCTGCAGCTTCCCCGCC 62.496 66.667 9.47 0.00 0.00 6.13
6 7 2.899339 GATCTGCAGCTTCCCCGC 60.899 66.667 9.47 0.00 0.00 6.13
7 8 2.203126 GGATCTGCAGCTTCCCCG 60.203 66.667 19.53 0.00 0.00 5.73
8 9 2.203126 CGGATCTGCAGCTTCCCC 60.203 66.667 22.51 12.45 0.00 4.81
9 10 2.203126 CCGGATCTGCAGCTTCCC 60.203 66.667 22.51 13.86 0.00 3.97
10 11 1.227497 CTCCGGATCTGCAGCTTCC 60.227 63.158 20.03 20.03 0.00 3.46
11 12 1.886777 GCTCCGGATCTGCAGCTTC 60.887 63.158 10.41 8.39 0.00 3.86
12 13 2.188994 GCTCCGGATCTGCAGCTT 59.811 61.111 10.41 0.00 0.00 3.74
13 14 2.763292 AGCTCCGGATCTGCAGCT 60.763 61.111 14.59 14.59 37.40 4.24
14 15 2.588314 CAGCTCCGGATCTGCAGC 60.588 66.667 21.50 9.64 0.00 5.25
18 19 4.247380 GGGGCAGCTCCGGATCTG 62.247 72.222 27.30 27.30 34.94 2.90
40 41 3.319198 GGAGCGGTCCAAGGTGGA 61.319 66.667 28.27 0.00 45.98 4.02
53 54 2.268920 TCCACATCGCCTTGGAGC 59.731 61.111 0.00 0.00 36.96 4.70
55 56 2.669133 CCCTCCACATCGCCTTGGA 61.669 63.158 0.00 0.00 39.72 3.53
56 57 2.124570 CCCTCCACATCGCCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
57 58 2.825836 GCCCTCCACATCGCCTTG 60.826 66.667 0.00 0.00 0.00 3.61
58 59 2.826777 CTTGCCCTCCACATCGCCTT 62.827 60.000 0.00 0.00 0.00 4.35
59 60 3.329889 TTGCCCTCCACATCGCCT 61.330 61.111 0.00 0.00 0.00 5.52
60 61 2.825836 CTTGCCCTCCACATCGCC 60.826 66.667 0.00 0.00 0.00 5.54
61 62 3.512516 GCTTGCCCTCCACATCGC 61.513 66.667 0.00 0.00 0.00 4.58
62 63 1.817099 GAGCTTGCCCTCCACATCG 60.817 63.158 0.00 0.00 0.00 3.84
63 64 0.322816 TTGAGCTTGCCCTCCACATC 60.323 55.000 0.00 0.00 0.00 3.06
64 65 0.112995 TTTGAGCTTGCCCTCCACAT 59.887 50.000 0.00 0.00 0.00 3.21
65 66 0.538057 CTTTGAGCTTGCCCTCCACA 60.538 55.000 0.00 0.00 0.00 4.17
66 67 1.871126 GCTTTGAGCTTGCCCTCCAC 61.871 60.000 0.00 0.00 38.45 4.02
67 68 1.604593 GCTTTGAGCTTGCCCTCCA 60.605 57.895 0.00 0.00 38.45 3.86
68 69 2.346541 GGCTTTGAGCTTGCCCTCC 61.347 63.158 9.04 0.00 41.99 4.30
69 70 3.282271 GGCTTTGAGCTTGCCCTC 58.718 61.111 9.04 0.00 41.99 4.30
71 72 2.643232 CCAGGCTTTGAGCTTGCCC 61.643 63.158 14.48 0.77 45.67 5.36
72 73 0.969409 ATCCAGGCTTTGAGCTTGCC 60.969 55.000 6.53 11.42 45.67 4.52
73 74 0.455005 GATCCAGGCTTTGAGCTTGC 59.545 55.000 6.53 0.00 45.67 4.01
74 75 1.101331 GGATCCAGGCTTTGAGCTTG 58.899 55.000 6.95 5.20 46.46 4.01
75 76 0.700564 TGGATCCAGGCTTTGAGCTT 59.299 50.000 11.44 0.00 41.99 3.74
76 77 0.255318 CTGGATCCAGGCTTTGAGCT 59.745 55.000 31.14 0.00 41.99 4.09
77 78 1.382692 GCTGGATCCAGGCTTTGAGC 61.383 60.000 36.92 20.89 43.77 4.26
78 79 0.255318 AGCTGGATCCAGGCTTTGAG 59.745 55.000 36.92 15.41 43.77 3.02
79 80 0.254178 GAGCTGGATCCAGGCTTTGA 59.746 55.000 36.92 3.89 43.77 2.69
80 81 1.094073 CGAGCTGGATCCAGGCTTTG 61.094 60.000 36.92 25.09 43.77 2.77
81 82 1.222936 CGAGCTGGATCCAGGCTTT 59.777 57.895 36.92 17.72 43.77 3.51
82 83 1.267574 TTCGAGCTGGATCCAGGCTT 61.268 55.000 36.92 20.29 43.77 4.35
83 84 1.684386 CTTCGAGCTGGATCCAGGCT 61.684 60.000 36.92 32.13 43.77 4.58
84 85 1.227497 CTTCGAGCTGGATCCAGGC 60.227 63.158 36.92 28.76 43.77 4.85
85 86 0.103937 GACTTCGAGCTGGATCCAGG 59.896 60.000 36.92 23.42 43.77 4.45
86 87 0.248825 CGACTTCGAGCTGGATCCAG 60.249 60.000 33.73 33.73 43.47 3.86
87 88 1.667154 CCGACTTCGAGCTGGATCCA 61.667 60.000 15.27 15.27 43.02 3.41
88 89 1.066587 CCGACTTCGAGCTGGATCC 59.933 63.158 4.20 4.20 43.02 3.36
89 90 0.030101 CTCCGACTTCGAGCTGGATC 59.970 60.000 0.00 0.00 43.02 3.36
90 91 2.010582 GCTCCGACTTCGAGCTGGAT 62.011 60.000 0.00 0.00 43.02 3.41
91 92 2.701780 GCTCCGACTTCGAGCTGGA 61.702 63.158 12.75 0.00 43.02 3.86
92 93 2.202676 GCTCCGACTTCGAGCTGG 60.203 66.667 12.75 0.00 43.02 4.85
93 94 2.578178 CGCTCCGACTTCGAGCTG 60.578 66.667 15.92 9.27 43.02 4.24
94 95 2.746671 TCGCTCCGACTTCGAGCT 60.747 61.111 15.92 0.00 43.02 4.09
106 107 4.863925 GAGCTCCGGCAGTCGCTC 62.864 72.222 0.87 5.18 41.60 5.03
109 110 4.838486 GTCGAGCTCCGGCAGTCG 62.838 72.222 8.47 11.58 43.50 4.18
114 115 3.567797 GCAATGTCGAGCTCCGGC 61.568 66.667 8.47 5.67 44.47 6.13
115 116 2.892425 GGCAATGTCGAGCTCCGG 60.892 66.667 8.47 0.00 39.14 5.14
116 117 2.892425 GGGCAATGTCGAGCTCCG 60.892 66.667 8.47 3.57 40.25 4.63
117 118 2.514824 GGGGCAATGTCGAGCTCC 60.515 66.667 8.47 0.00 45.47 4.70
118 119 2.892425 CGGGGCAATGTCGAGCTC 60.892 66.667 2.73 2.73 0.00 4.09
119 120 4.473520 CCGGGGCAATGTCGAGCT 62.474 66.667 0.00 0.00 0.00 4.09
120 121 3.757248 ATCCGGGGCAATGTCGAGC 62.757 63.158 0.00 0.00 0.00 5.03
121 122 1.889105 CATCCGGGGCAATGTCGAG 60.889 63.158 0.00 0.00 0.00 4.04
122 123 2.189257 CATCCGGGGCAATGTCGA 59.811 61.111 0.00 0.00 0.00 4.20
123 124 3.585990 GCATCCGGGGCAATGTCG 61.586 66.667 13.23 0.00 0.00 4.35
124 125 3.585990 CGCATCCGGGGCAATGTC 61.586 66.667 17.27 3.40 0.00 3.06
125 126 3.420206 ATCGCATCCGGGGCAATGT 62.420 57.895 17.27 0.00 34.56 2.71
126 127 2.595463 ATCGCATCCGGGGCAATG 60.595 61.111 17.27 8.00 34.56 2.82
127 128 2.281761 GATCGCATCCGGGGCAAT 60.282 61.111 17.27 6.05 34.56 3.56
128 129 4.908687 CGATCGCATCCGGGGCAA 62.909 66.667 17.27 1.11 34.56 4.52
131 132 3.240134 ATTCCGATCGCATCCGGGG 62.240 63.158 10.32 0.00 45.36 5.73
132 133 1.738099 GATTCCGATCGCATCCGGG 60.738 63.158 10.32 0.00 45.36 5.73
133 134 3.862124 GATTCCGATCGCATCCGG 58.138 61.111 10.32 0.00 46.57 5.14
141 142 2.661866 CCCGCACCGATTCCGATC 60.662 66.667 0.00 0.00 38.22 3.69
142 143 4.235762 CCCCGCACCGATTCCGAT 62.236 66.667 0.00 0.00 38.22 4.18
144 145 4.891727 CTCCCCGCACCGATTCCG 62.892 72.222 0.00 0.00 0.00 4.30
145 146 3.447025 CTCTCCCCGCACCGATTCC 62.447 68.421 0.00 0.00 0.00 3.01
146 147 2.107141 CTCTCCCCGCACCGATTC 59.893 66.667 0.00 0.00 0.00 2.52
147 148 3.470888 CCTCTCCCCGCACCGATT 61.471 66.667 0.00 0.00 0.00 3.34
148 149 4.458829 TCCTCTCCCCGCACCGAT 62.459 66.667 0.00 0.00 0.00 4.18
151 152 3.151022 CTCTCCTCTCCCCGCACC 61.151 72.222 0.00 0.00 0.00 5.01
152 153 3.151022 CCTCTCCTCTCCCCGCAC 61.151 72.222 0.00 0.00 0.00 5.34
153 154 3.347590 TCCTCTCCTCTCCCCGCA 61.348 66.667 0.00 0.00 0.00 5.69
154 155 2.835895 GTCCTCTCCTCTCCCCGC 60.836 72.222 0.00 0.00 0.00 6.13
155 156 2.517402 CGTCCTCTCCTCTCCCCG 60.517 72.222 0.00 0.00 0.00 5.73
156 157 0.753848 CTTCGTCCTCTCCTCTCCCC 60.754 65.000 0.00 0.00 0.00 4.81
157 158 1.388837 GCTTCGTCCTCTCCTCTCCC 61.389 65.000 0.00 0.00 0.00 4.30
158 159 1.720694 CGCTTCGTCCTCTCCTCTCC 61.721 65.000 0.00 0.00 0.00 3.71
159 160 0.745128 TCGCTTCGTCCTCTCCTCTC 60.745 60.000 0.00 0.00 0.00 3.20
160 161 0.746563 CTCGCTTCGTCCTCTCCTCT 60.747 60.000 0.00 0.00 0.00 3.69
161 162 0.745128 TCTCGCTTCGTCCTCTCCTC 60.745 60.000 0.00 0.00 0.00 3.71
162 163 0.746563 CTCTCGCTTCGTCCTCTCCT 60.747 60.000 0.00 0.00 0.00 3.69
163 164 1.720694 CCTCTCGCTTCGTCCTCTCC 61.721 65.000 0.00 0.00 0.00 3.71
164 165 0.745128 TCCTCTCGCTTCGTCCTCTC 60.745 60.000 0.00 0.00 0.00 3.20
165 166 0.746563 CTCCTCTCGCTTCGTCCTCT 60.747 60.000 0.00 0.00 0.00 3.69
166 167 0.745128 TCTCCTCTCGCTTCGTCCTC 60.745 60.000 0.00 0.00 0.00 3.71
167 168 0.746563 CTCTCCTCTCGCTTCGTCCT 60.747 60.000 0.00 0.00 0.00 3.85
168 169 1.725066 CTCTCCTCTCGCTTCGTCC 59.275 63.158 0.00 0.00 0.00 4.79
169 170 1.063488 GCTCTCCTCTCGCTTCGTC 59.937 63.158 0.00 0.00 0.00 4.20
170 171 2.756025 CGCTCTCCTCTCGCTTCGT 61.756 63.158 0.00 0.00 0.00 3.85
171 172 2.024022 CGCTCTCCTCTCGCTTCG 59.976 66.667 0.00 0.00 0.00 3.79
172 173 1.226547 CACGCTCTCCTCTCGCTTC 60.227 63.158 0.00 0.00 0.00 3.86
173 174 1.653094 CTCACGCTCTCCTCTCGCTT 61.653 60.000 0.00 0.00 0.00 4.68
174 175 2.045829 TCACGCTCTCCTCTCGCT 60.046 61.111 0.00 0.00 0.00 4.93
175 176 2.403378 ACTCACGCTCTCCTCTCGC 61.403 63.158 0.00 0.00 0.00 5.03
176 177 1.021920 TCACTCACGCTCTCCTCTCG 61.022 60.000 0.00 0.00 0.00 4.04
177 178 0.732571 CTCACTCACGCTCTCCTCTC 59.267 60.000 0.00 0.00 0.00 3.20
178 179 0.037590 ACTCACTCACGCTCTCCTCT 59.962 55.000 0.00 0.00 0.00 3.69
179 180 0.885196 AACTCACTCACGCTCTCCTC 59.115 55.000 0.00 0.00 0.00 3.71
180 181 2.088423 CTAACTCACTCACGCTCTCCT 58.912 52.381 0.00 0.00 0.00 3.69
181 182 1.133407 CCTAACTCACTCACGCTCTCC 59.867 57.143 0.00 0.00 0.00 3.71
182 183 1.133407 CCCTAACTCACTCACGCTCTC 59.867 57.143 0.00 0.00 0.00 3.20
183 184 1.178276 CCCTAACTCACTCACGCTCT 58.822 55.000 0.00 0.00 0.00 4.09
184 185 0.889306 ACCCTAACTCACTCACGCTC 59.111 55.000 0.00 0.00 0.00 5.03
185 186 1.339097 AACCCTAACTCACTCACGCT 58.661 50.000 0.00 0.00 0.00 5.07
186 187 2.067013 GAAACCCTAACTCACTCACGC 58.933 52.381 0.00 0.00 0.00 5.34
187 188 2.325761 CGAAACCCTAACTCACTCACG 58.674 52.381 0.00 0.00 0.00 4.35
188 189 2.298163 TCCGAAACCCTAACTCACTCAC 59.702 50.000 0.00 0.00 0.00 3.51
189 190 2.561419 CTCCGAAACCCTAACTCACTCA 59.439 50.000 0.00 0.00 0.00 3.41
190 191 2.674462 GCTCCGAAACCCTAACTCACTC 60.674 54.545 0.00 0.00 0.00 3.51
191 192 1.275573 GCTCCGAAACCCTAACTCACT 59.724 52.381 0.00 0.00 0.00 3.41
192 193 1.723220 GCTCCGAAACCCTAACTCAC 58.277 55.000 0.00 0.00 0.00 3.51
193 194 0.245539 CGCTCCGAAACCCTAACTCA 59.754 55.000 0.00 0.00 0.00 3.41
194 195 0.529378 TCGCTCCGAAACCCTAACTC 59.471 55.000 0.00 0.00 31.06 3.01
195 196 1.134788 CATCGCTCCGAAACCCTAACT 60.135 52.381 0.00 0.00 39.99 2.24
196 197 1.134907 TCATCGCTCCGAAACCCTAAC 60.135 52.381 0.00 0.00 39.99 2.34
197 198 1.136305 CTCATCGCTCCGAAACCCTAA 59.864 52.381 0.00 0.00 39.99 2.69
198 199 0.744874 CTCATCGCTCCGAAACCCTA 59.255 55.000 0.00 0.00 39.99 3.53
199 200 1.517832 CTCATCGCTCCGAAACCCT 59.482 57.895 0.00 0.00 39.99 4.34
200 201 2.174319 GCTCATCGCTCCGAAACCC 61.174 63.158 0.00 0.00 39.99 4.11
201 202 2.174319 GGCTCATCGCTCCGAAACC 61.174 63.158 0.00 0.00 39.99 3.27
202 203 1.424493 CTGGCTCATCGCTCCGAAAC 61.424 60.000 0.00 0.00 39.99 2.78
203 204 1.153568 CTGGCTCATCGCTCCGAAA 60.154 57.895 0.00 0.00 39.99 3.46
204 205 1.395045 ATCTGGCTCATCGCTCCGAA 61.395 55.000 0.00 0.00 39.99 4.30
205 206 1.829970 ATCTGGCTCATCGCTCCGA 60.830 57.895 0.00 0.00 41.13 4.55
206 207 1.664017 CATCTGGCTCATCGCTCCG 60.664 63.158 0.00 0.00 39.13 4.63
207 208 0.105593 TTCATCTGGCTCATCGCTCC 59.894 55.000 0.00 0.00 39.13 4.70
208 209 1.945387 TTTCATCTGGCTCATCGCTC 58.055 50.000 0.00 0.00 39.13 5.03
209 210 2.634815 ATTTCATCTGGCTCATCGCT 57.365 45.000 0.00 0.00 39.13 4.93
210 211 3.705043 AAATTTCATCTGGCTCATCGC 57.295 42.857 0.00 0.00 38.13 4.58
229 230 1.384525 CCACGTCTGTCCCACAAAAA 58.615 50.000 0.00 0.00 0.00 1.94
230 231 0.464735 CCCACGTCTGTCCCACAAAA 60.465 55.000 0.00 0.00 0.00 2.44
231 232 1.147376 CCCACGTCTGTCCCACAAA 59.853 57.895 0.00 0.00 0.00 2.83
232 233 2.813726 CCCCACGTCTGTCCCACAA 61.814 63.158 0.00 0.00 0.00 3.33
233 234 3.238497 CCCCACGTCTGTCCCACA 61.238 66.667 0.00 0.00 0.00 4.17
234 235 3.236003 GACCCCACGTCTGTCCCAC 62.236 68.421 0.00 0.00 38.57 4.61
235 236 2.920912 GACCCCACGTCTGTCCCA 60.921 66.667 0.00 0.00 38.57 4.37
236 237 4.065281 CGACCCCACGTCTGTCCC 62.065 72.222 0.00 0.00 39.56 4.46
237 238 4.065281 CCGACCCCACGTCTGTCC 62.065 72.222 0.00 0.00 39.56 4.02
238 239 1.318158 ATACCGACCCCACGTCTGTC 61.318 60.000 0.00 0.00 39.40 3.51
239 240 0.901580 AATACCGACCCCACGTCTGT 60.902 55.000 0.00 0.00 41.32 3.41
240 241 1.105457 TAATACCGACCCCACGTCTG 58.895 55.000 0.00 0.00 39.56 3.51
241 242 1.753073 CTTAATACCGACCCCACGTCT 59.247 52.381 0.00 0.00 39.56 4.18
242 243 1.803998 GCTTAATACCGACCCCACGTC 60.804 57.143 0.00 0.00 38.21 4.34
243 244 0.176449 GCTTAATACCGACCCCACGT 59.824 55.000 0.00 0.00 0.00 4.49
244 245 0.462789 AGCTTAATACCGACCCCACG 59.537 55.000 0.00 0.00 0.00 4.94
245 246 1.474498 CCAGCTTAATACCGACCCCAC 60.474 57.143 0.00 0.00 0.00 4.61
246 247 0.834612 CCAGCTTAATACCGACCCCA 59.165 55.000 0.00 0.00 0.00 4.96
247 248 1.125633 TCCAGCTTAATACCGACCCC 58.874 55.000 0.00 0.00 0.00 4.95
248 249 1.761198 AGTCCAGCTTAATACCGACCC 59.239 52.381 0.00 0.00 0.00 4.46
249 250 3.195661 CAAGTCCAGCTTAATACCGACC 58.804 50.000 0.00 0.00 35.27 4.79
250 251 3.858247 ACAAGTCCAGCTTAATACCGAC 58.142 45.455 0.00 0.00 35.27 4.79
251 252 3.512329 TGACAAGTCCAGCTTAATACCGA 59.488 43.478 0.00 0.00 35.27 4.69
252 253 3.857052 TGACAAGTCCAGCTTAATACCG 58.143 45.455 0.00 0.00 35.27 4.02
253 254 4.192317 CCTGACAAGTCCAGCTTAATACC 58.808 47.826 0.00 0.00 35.27 2.73
254 255 3.623510 GCCTGACAAGTCCAGCTTAATAC 59.376 47.826 0.00 0.00 35.27 1.89
255 256 3.263170 TGCCTGACAAGTCCAGCTTAATA 59.737 43.478 11.30 0.00 35.27 0.98
256 257 2.040278 TGCCTGACAAGTCCAGCTTAAT 59.960 45.455 11.30 0.00 35.27 1.40
257 258 1.419762 TGCCTGACAAGTCCAGCTTAA 59.580 47.619 11.30 0.00 35.27 1.85
258 259 1.002430 CTGCCTGACAAGTCCAGCTTA 59.998 52.381 11.30 0.00 35.27 3.09
259 260 0.250640 CTGCCTGACAAGTCCAGCTT 60.251 55.000 11.30 0.00 38.08 3.74
260 261 1.123861 TCTGCCTGACAAGTCCAGCT 61.124 55.000 11.30 0.00 0.00 4.24
261 262 0.952984 GTCTGCCTGACAAGTCCAGC 60.953 60.000 0.00 1.56 44.73 4.85
262 263 0.668706 CGTCTGCCTGACAAGTCCAG 60.669 60.000 2.57 0.00 45.60 3.86
263 264 1.367471 CGTCTGCCTGACAAGTCCA 59.633 57.895 2.57 0.00 45.60 4.02
264 265 2.029844 GCGTCTGCCTGACAAGTCC 61.030 63.158 2.57 0.00 45.60 3.85
265 266 2.375766 CGCGTCTGCCTGACAAGTC 61.376 63.158 0.00 0.00 45.60 3.01
266 267 2.356313 CGCGTCTGCCTGACAAGT 60.356 61.111 0.00 0.00 45.60 3.16
267 268 3.782244 GCGCGTCTGCCTGACAAG 61.782 66.667 8.43 0.00 45.60 3.16
297 298 4.137615 GTGGGTATGGGGTGGCCC 62.138 72.222 0.00 0.00 44.51 5.80
298 299 4.137615 GGTGGGTATGGGGTGGCC 62.138 72.222 0.00 0.00 0.00 5.36
299 300 4.137615 GGGTGGGTATGGGGTGGC 62.138 72.222 0.00 0.00 0.00 5.01
300 301 3.425925 GGGGTGGGTATGGGGTGG 61.426 72.222 0.00 0.00 0.00 4.61
301 302 0.699577 TATGGGGTGGGTATGGGGTG 60.700 60.000 0.00 0.00 0.00 4.61
302 303 0.276906 ATATGGGGTGGGTATGGGGT 59.723 55.000 0.00 0.00 0.00 4.95
303 304 1.466858 AATATGGGGTGGGTATGGGG 58.533 55.000 0.00 0.00 0.00 4.96
304 305 2.492567 CCAAATATGGGGTGGGTATGGG 60.493 54.545 0.00 0.00 43.51 4.00
305 306 2.888212 CCAAATATGGGGTGGGTATGG 58.112 52.381 0.00 0.00 43.51 2.74
317 318 4.338879 CCCTCTTATCCAGCCCAAATATG 58.661 47.826 0.00 0.00 0.00 1.78
318 319 3.334881 CCCCTCTTATCCAGCCCAAATAT 59.665 47.826 0.00 0.00 0.00 1.28
319 320 2.716424 CCCCTCTTATCCAGCCCAAATA 59.284 50.000 0.00 0.00 0.00 1.40
320 321 1.500736 CCCCTCTTATCCAGCCCAAAT 59.499 52.381 0.00 0.00 0.00 2.32
321 322 0.926293 CCCCTCTTATCCAGCCCAAA 59.074 55.000 0.00 0.00 0.00 3.28
322 323 0.253630 ACCCCTCTTATCCAGCCCAA 60.254 55.000 0.00 0.00 0.00 4.12
323 324 0.988145 CACCCCTCTTATCCAGCCCA 60.988 60.000 0.00 0.00 0.00 5.36
324 325 1.839894 CACCCCTCTTATCCAGCCC 59.160 63.158 0.00 0.00 0.00 5.19
325 326 1.149401 GCACCCCTCTTATCCAGCC 59.851 63.158 0.00 0.00 0.00 4.85
326 327 1.149401 GGCACCCCTCTTATCCAGC 59.851 63.158 0.00 0.00 0.00 4.85
327 328 1.048724 TCGGCACCCCTCTTATCCAG 61.049 60.000 0.00 0.00 0.00 3.86
328 329 0.399949 ATCGGCACCCCTCTTATCCA 60.400 55.000 0.00 0.00 0.00 3.41
329 330 0.321996 GATCGGCACCCCTCTTATCC 59.678 60.000 0.00 0.00 0.00 2.59
330 331 1.001406 CTGATCGGCACCCCTCTTATC 59.999 57.143 0.00 0.00 0.00 1.75
331 332 1.051812 CTGATCGGCACCCCTCTTAT 58.948 55.000 0.00 0.00 0.00 1.73
332 333 1.686325 GCTGATCGGCACCCCTCTTA 61.686 60.000 21.88 0.00 0.00 2.10
333 334 3.036429 GCTGATCGGCACCCCTCTT 62.036 63.158 21.88 0.00 0.00 2.85
334 335 3.474570 GCTGATCGGCACCCCTCT 61.475 66.667 21.88 0.00 0.00 3.69
335 336 4.554036 GGCTGATCGGCACCCCTC 62.554 72.222 27.26 5.67 38.25 4.30
338 339 4.864334 CAGGGCTGATCGGCACCC 62.864 72.222 25.33 18.37 40.61 4.61
339 340 4.864334 CCAGGGCTGATCGGCACC 62.864 72.222 25.33 22.53 40.61 5.01
344 345 4.845580 AAGCGCCAGGGCTGATCG 62.846 66.667 10.21 0.00 43.93 3.69
345 346 3.207669 CAAGCGCCAGGGCTGATC 61.208 66.667 10.21 0.00 43.93 2.92
346 347 3.694058 CTCAAGCGCCAGGGCTGAT 62.694 63.158 10.21 0.00 43.93 2.90
347 348 4.399395 CTCAAGCGCCAGGGCTGA 62.399 66.667 10.21 8.84 43.93 4.26
357 358 2.436646 ATGAACGGGCCTCAAGCG 60.437 61.111 0.84 0.00 45.17 4.68
358 359 2.409870 CCATGAACGGGCCTCAAGC 61.410 63.158 0.84 0.00 42.60 4.01
359 360 2.409870 GCCATGAACGGGCCTCAAG 61.410 63.158 0.84 0.00 45.87 3.02
360 361 2.361104 GCCATGAACGGGCCTCAA 60.361 61.111 0.84 0.00 45.87 3.02
378 379 1.134367 GAAAATTTGACCTAGGCGGGC 59.866 52.381 9.30 0.00 43.30 6.13
379 380 1.400494 CGAAAATTTGACCTAGGCGGG 59.600 52.381 9.30 0.00 36.97 6.13
380 381 2.081462 ACGAAAATTTGACCTAGGCGG 58.919 47.619 9.30 0.00 39.35 6.13
381 382 2.739913 TCACGAAAATTTGACCTAGGCG 59.260 45.455 9.30 3.23 0.00 5.52
382 383 3.424433 CGTCACGAAAATTTGACCTAGGC 60.424 47.826 9.30 2.11 39.22 3.93
383 384 3.124636 CCGTCACGAAAATTTGACCTAGG 59.875 47.826 7.41 7.41 39.22 3.02
384 385 3.424433 GCCGTCACGAAAATTTGACCTAG 60.424 47.826 0.00 0.00 39.22 3.02
385 386 2.481185 GCCGTCACGAAAATTTGACCTA 59.519 45.455 0.00 0.00 39.22 3.08
386 387 1.265905 GCCGTCACGAAAATTTGACCT 59.734 47.619 0.00 0.00 39.22 3.85
387 388 1.664874 GGCCGTCACGAAAATTTGACC 60.665 52.381 0.00 0.00 39.22 4.02
388 389 1.002251 TGGCCGTCACGAAAATTTGAC 60.002 47.619 0.00 0.00 39.05 3.18
389 390 1.309950 TGGCCGTCACGAAAATTTGA 58.690 45.000 0.00 0.00 0.00 2.69
390 391 2.126914 TTGGCCGTCACGAAAATTTG 57.873 45.000 0.00 0.00 0.00 2.32
391 392 2.294791 TCATTGGCCGTCACGAAAATTT 59.705 40.909 0.00 0.00 0.00 1.82
392 393 1.883275 TCATTGGCCGTCACGAAAATT 59.117 42.857 0.00 0.00 0.00 1.82
393 394 1.199097 GTCATTGGCCGTCACGAAAAT 59.801 47.619 0.00 0.00 0.00 1.82
394 395 0.589223 GTCATTGGCCGTCACGAAAA 59.411 50.000 0.00 0.00 0.00 2.29
395 396 0.250124 AGTCATTGGCCGTCACGAAA 60.250 50.000 0.00 0.00 0.00 3.46
396 397 0.250124 AAGTCATTGGCCGTCACGAA 60.250 50.000 0.00 0.00 0.00 3.85
397 398 0.948623 CAAGTCATTGGCCGTCACGA 60.949 55.000 0.00 0.00 32.43 4.35
398 399 0.948623 TCAAGTCATTGGCCGTCACG 60.949 55.000 0.00 0.00 37.02 4.35
399 400 0.517316 GTCAAGTCATTGGCCGTCAC 59.483 55.000 0.00 0.00 34.85 3.67
400 401 0.948623 CGTCAAGTCATTGGCCGTCA 60.949 55.000 0.00 0.00 37.78 4.35
401 402 1.635663 CCGTCAAGTCATTGGCCGTC 61.636 60.000 0.00 0.00 37.78 4.79
402 403 1.671054 CCGTCAAGTCATTGGCCGT 60.671 57.895 0.00 0.00 37.78 5.68
403 404 2.398554 CCCGTCAAGTCATTGGCCG 61.399 63.158 0.00 0.00 37.78 6.13
404 405 1.002624 TCCCGTCAAGTCATTGGCC 60.003 57.895 0.00 0.00 37.78 5.36
405 406 1.305930 GGTCCCGTCAAGTCATTGGC 61.306 60.000 0.00 0.00 37.69 4.52
406 407 0.676782 GGGTCCCGTCAAGTCATTGG 60.677 60.000 0.00 0.00 37.02 3.16
407 408 1.019278 CGGGTCCCGTCAAGTCATTG 61.019 60.000 23.02 0.00 42.73 2.82
408 409 1.295423 CGGGTCCCGTCAAGTCATT 59.705 57.895 23.02 0.00 42.73 2.57
409 410 2.656069 CCGGGTCCCGTCAAGTCAT 61.656 63.158 28.39 0.00 46.80 3.06
410 411 3.307906 CCGGGTCCCGTCAAGTCA 61.308 66.667 28.39 0.00 46.80 3.41
411 412 4.078516 CCCGGGTCCCGTCAAGTC 62.079 72.222 28.39 0.00 46.80 3.01
426 427 3.537874 ATCTACAGCCGGACGCCC 61.538 66.667 5.05 0.00 38.78 6.13
427 428 2.279517 CATCTACAGCCGGACGCC 60.280 66.667 5.05 0.00 38.78 5.68
428 429 2.962253 GCATCTACAGCCGGACGC 60.962 66.667 5.05 0.00 37.98 5.19
429 430 1.299468 GAGCATCTACAGCCGGACG 60.299 63.158 5.05 0.00 0.00 4.79
430 431 4.740235 GAGCATCTACAGCCGGAC 57.260 61.111 5.05 0.00 0.00 4.79
467 468 1.205460 TGGAAACCCTAGGAGCACCC 61.205 60.000 11.48 5.33 36.73 4.61
468 469 0.919710 ATGGAAACCCTAGGAGCACC 59.080 55.000 11.48 9.05 0.00 5.01
475 477 5.104259 ACTCTTTAGCATGGAAACCCTAG 57.896 43.478 0.00 0.00 0.00 3.02
479 481 5.063564 CGTTCTACTCTTTAGCATGGAAACC 59.936 44.000 0.00 0.00 0.00 3.27
485 487 4.502282 CAGAGCGTTCTACTCTTTAGCATG 59.498 45.833 0.00 0.00 41.79 4.06
496 498 1.135139 TCTGCATCCAGAGCGTTCTAC 59.865 52.381 0.00 0.00 42.98 2.59
508 510 3.287867 TCTCCCTCAAATTCTGCATCC 57.712 47.619 0.00 0.00 0.00 3.51
514 516 2.158842 CGGCAGATCTCCCTCAAATTCT 60.159 50.000 0.06 0.00 0.00 2.40
565 567 7.771183 TCATAAGTATTCTTTTTGCATCCACC 58.229 34.615 0.00 0.00 35.36 4.61
626 630 5.011635 AGGGCCGAATTTCTTTTACATGTTT 59.988 36.000 2.30 0.00 0.00 2.83
645 649 4.281657 ACTCTTTGATTATTTGGAGGGCC 58.718 43.478 0.00 0.00 0.00 5.80
646 650 4.339530 GGACTCTTTGATTATTTGGAGGGC 59.660 45.833 0.00 0.00 0.00 5.19
647 651 5.509498 TGGACTCTTTGATTATTTGGAGGG 58.491 41.667 0.00 0.00 0.00 4.30
669 673 3.878086 AGCGATTACACAACACAGTTG 57.122 42.857 8.24 8.24 0.00 3.16
707 711 6.030548 TCACATGGTTGAAACTTGAAAACA 57.969 33.333 2.92 0.00 0.00 2.83
758 762 7.416101 GGGCCTCTCTGATTTGAAGATTTTTAG 60.416 40.741 0.84 0.00 0.00 1.85
770 774 1.904440 ATGAGGGGCCTCTCTGATTT 58.096 50.000 32.52 10.16 43.12 2.17
817 821 0.727398 GCAATTACAGAGCACGGGTC 59.273 55.000 0.00 0.00 0.00 4.46
868 872 6.568462 GCTTCATTTCTCTTTCGTGAATTGGA 60.568 38.462 0.00 0.00 30.73 3.53
878 882 5.649782 TGGAATGGCTTCATTTCTCTTTC 57.350 39.130 0.00 0.00 40.83 2.62
1000 1004 0.612229 CAGAGCACACACCAGAGGAT 59.388 55.000 0.00 0.00 0.00 3.24
1006 1010 1.748493 GTTTTTCCAGAGCACACACCA 59.252 47.619 0.00 0.00 0.00 4.17
1060 1068 3.423154 CTTCCGGTTGCTGTCGGC 61.423 66.667 0.00 0.00 45.31 5.54
1212 1220 0.247185 CGTGCCAGAATTTGCCCAAT 59.753 50.000 0.00 0.00 0.00 3.16
1368 1376 0.742505 ACGTCTCGAACACCTTCACA 59.257 50.000 0.00 0.00 0.00 3.58
1423 1431 1.813753 GCTCTAACAATGCGCCGGA 60.814 57.895 5.05 0.00 0.00 5.14
1491 1499 1.451387 CGTACCATGGCCCTTGGAC 60.451 63.158 24.64 16.99 37.69 4.02
1598 1606 8.860088 AGCCACACTGTTAATTTCTTAAAAGAT 58.140 29.630 3.00 0.00 35.10 2.40
1699 1708 8.561738 TCTACATGATCTTGGTTTCCTTTAAC 57.438 34.615 12.76 0.00 0.00 2.01
1751 1768 7.903995 ATTCATCCGTTTTGCAAATAATGTT 57.096 28.000 13.65 4.90 0.00 2.71
1784 1801 1.741706 GCCATGACACTGATTCCTGTG 59.258 52.381 0.00 0.00 44.62 3.66
1785 1802 1.352017 TGCCATGACACTGATTCCTGT 59.648 47.619 0.00 0.00 0.00 4.00
1786 1803 2.118313 TGCCATGACACTGATTCCTG 57.882 50.000 0.00 0.00 0.00 3.86
1787 1804 4.719026 ATATGCCATGACACTGATTCCT 57.281 40.909 0.00 0.00 0.00 3.36
1788 1805 4.823442 TCAATATGCCATGACACTGATTCC 59.177 41.667 0.00 0.00 0.00 3.01
1789 1806 6.381481 TTCAATATGCCATGACACTGATTC 57.619 37.500 0.00 0.00 0.00 2.52
1790 1807 6.778834 TTTCAATATGCCATGACACTGATT 57.221 33.333 0.00 0.00 0.00 2.57
1791 1808 6.776116 AGATTTCAATATGCCATGACACTGAT 59.224 34.615 0.00 0.00 0.00 2.90
1792 1809 6.124340 AGATTTCAATATGCCATGACACTGA 58.876 36.000 0.00 0.00 0.00 3.41
1793 1810 6.387041 AGATTTCAATATGCCATGACACTG 57.613 37.500 0.00 0.00 0.00 3.66
1800 1817 9.986157 ATAATCCAGTAGATTTCAATATGCCAT 57.014 29.630 0.00 0.00 42.86 4.40
1814 1831 6.325545 ACCAAACGACCATATAATCCAGTAGA 59.674 38.462 0.00 0.00 0.00 2.59
1866 1918 6.263617 GGTTGTTTGATTTGTACTAGGTTCCA 59.736 38.462 0.00 0.00 0.00 3.53
1867 1919 6.294342 GGGTTGTTTGATTTGTACTAGGTTCC 60.294 42.308 0.00 0.00 0.00 3.62
1948 2116 9.131791 GAACATTATTAGGCCTCCTTTAATTCA 57.868 33.333 9.68 0.00 34.61 2.57
2020 2189 6.109156 TCCAAGCTATTGTAACTCAGTCAA 57.891 37.500 0.00 0.00 34.39 3.18
2022 2191 6.091441 CACTTCCAAGCTATTGTAACTCAGTC 59.909 42.308 0.00 0.00 34.39 3.51
2142 2311 1.337447 TGGTACTCCACAAGTAAGCGC 60.337 52.381 0.00 0.00 42.11 5.92
2215 2385 6.874134 GGTGTAGTTGATGAGTGTGAAAGTAT 59.126 38.462 0.00 0.00 0.00 2.12
2305 2476 9.814899 TGATTTATTTGACATTCGCCATATTTT 57.185 25.926 0.00 0.00 0.00 1.82
2306 2477 9.248291 GTGATTTATTTGACATTCGCCATATTT 57.752 29.630 0.00 0.00 0.00 1.40
2333 2504 7.030075 CACATGTGCACCATTGATTCTTATA 57.970 36.000 13.94 0.00 0.00 0.98
2334 2505 5.898174 CACATGTGCACCATTGATTCTTAT 58.102 37.500 13.94 0.00 0.00 1.73
2335 2506 5.313520 CACATGTGCACCATTGATTCTTA 57.686 39.130 13.94 0.00 0.00 2.10
2336 2507 4.182693 CACATGTGCACCATTGATTCTT 57.817 40.909 13.94 0.00 0.00 2.52
2337 2508 3.861276 CACATGTGCACCATTGATTCT 57.139 42.857 13.94 0.00 0.00 2.40
2350 2521 6.057533 TGATATCCCTTCTTTAGCACATGTG 58.942 40.000 21.83 21.83 0.00 3.21
2351 2522 6.252599 TGATATCCCTTCTTTAGCACATGT 57.747 37.500 0.00 0.00 0.00 3.21
2352 2523 7.230108 ACAATGATATCCCTTCTTTAGCACATG 59.770 37.037 0.00 0.00 0.00 3.21
2353 2524 7.230108 CACAATGATATCCCTTCTTTAGCACAT 59.770 37.037 0.00 0.00 0.00 3.21
2354 2525 6.543465 CACAATGATATCCCTTCTTTAGCACA 59.457 38.462 0.00 0.00 0.00 4.57
2355 2526 6.767902 TCACAATGATATCCCTTCTTTAGCAC 59.232 38.462 0.00 0.00 0.00 4.40
2356 2527 6.899089 TCACAATGATATCCCTTCTTTAGCA 58.101 36.000 0.00 0.00 0.00 3.49
2357 2528 7.807977 TTCACAATGATATCCCTTCTTTAGC 57.192 36.000 0.00 0.00 0.00 3.09
2360 2531 8.506083 ACCTATTCACAATGATATCCCTTCTTT 58.494 33.333 0.00 0.00 0.00 2.52
2361 2532 7.941238 CACCTATTCACAATGATATCCCTTCTT 59.059 37.037 0.00 0.00 0.00 2.52
2362 2533 7.293299 TCACCTATTCACAATGATATCCCTTCT 59.707 37.037 0.00 0.00 0.00 2.85
2363 2534 7.453393 TCACCTATTCACAATGATATCCCTTC 58.547 38.462 0.00 0.00 0.00 3.46
2364 2535 7.392766 TCACCTATTCACAATGATATCCCTT 57.607 36.000 0.00 0.00 0.00 3.95
2365 2536 7.017950 ACATCACCTATTCACAATGATATCCCT 59.982 37.037 0.00 0.00 0.00 4.20
2366 2537 7.170965 ACATCACCTATTCACAATGATATCCC 58.829 38.462 0.00 0.00 0.00 3.85
2367 2538 8.627208 AACATCACCTATTCACAATGATATCC 57.373 34.615 0.00 0.00 0.00 2.59
2368 2539 9.276590 TGAACATCACCTATTCACAATGATATC 57.723 33.333 0.00 0.00 0.00 1.63
2394 2565 4.938575 TTGGGTATGTAGTTGAATGGGT 57.061 40.909 0.00 0.00 0.00 4.51
2422 2593 0.249398 ATTTTCGGGACACCTCGAGG 59.751 55.000 30.11 30.11 42.17 4.63
2423 2594 2.094390 TGTATTTTCGGGACACCTCGAG 60.094 50.000 5.13 5.13 36.72 4.04
2424 2595 1.894466 TGTATTTTCGGGACACCTCGA 59.106 47.619 0.00 0.00 33.28 4.04
2425 2596 2.373540 TGTATTTTCGGGACACCTCG 57.626 50.000 0.00 0.00 33.28 4.63
2426 2597 3.671716 AGTTGTATTTTCGGGACACCTC 58.328 45.455 0.00 0.00 33.28 3.85
2427 2598 3.558533 GGAGTTGTATTTTCGGGACACCT 60.559 47.826 0.00 0.00 33.28 4.00
2428 2599 2.745821 GGAGTTGTATTTTCGGGACACC 59.254 50.000 0.00 0.00 0.00 4.16
2453 2628 6.525976 GTGAGAGGTGTTTTATCTGTACGTAC 59.474 42.308 18.90 18.90 0.00 3.67
2473 2648 6.484288 ACACAGAATATTGGAAATGGTGAGA 58.516 36.000 0.00 0.00 0.00 3.27
2523 2698 6.041511 TCTTACGCTCGCTATATCTACCTAG 58.958 44.000 0.00 0.00 0.00 3.02
2546 2721 5.221322 GCCCCATTGTTAATCTTCCTGATTC 60.221 44.000 0.00 0.00 43.69 2.52
2562 2737 6.469782 AAACATACAAGATAAGCCCCATTG 57.530 37.500 0.00 0.00 0.00 2.82
2568 2743 4.260784 CCTGCGAAACATACAAGATAAGCC 60.261 45.833 0.00 0.00 0.00 4.35
2651 2826 3.423539 ACTGCTTCTTTGCCTGTATGA 57.576 42.857 0.00 0.00 0.00 2.15
2784 2959 3.352338 GAGGGTGCCGGTGTACTCG 62.352 68.421 1.90 0.00 32.03 4.18
2787 2962 4.091939 GGGAGGGTGCCGGTGTAC 62.092 72.222 1.90 0.00 0.00 2.90
3196 3371 4.270008 AGCACCAGTAGACAAAACACTTT 58.730 39.130 0.00 0.00 0.00 2.66
3207 3382 0.969149 CCACACAGAGCACCAGTAGA 59.031 55.000 0.00 0.00 0.00 2.59
3305 3483 6.040209 TCTAAAATGCATGCTGTTTGGAAT 57.960 33.333 20.33 7.57 0.00 3.01
3375 3553 1.952296 CCTGCCTCATATGGTTTCAGC 59.048 52.381 2.13 0.00 0.00 4.26
3535 3727 3.249320 CCATTGACTGCATATGGTCTTCG 59.751 47.826 4.56 0.00 35.23 3.79
3815 4007 7.499895 AGTCCATTTGTTCATCATTTTTGCTTT 59.500 29.630 0.00 0.00 0.00 3.51
3967 4159 7.115378 GGAGTTCAATTTTTGTGTGAAGCATAG 59.885 37.037 0.00 0.00 32.15 2.23
3984 4176 4.566759 CGTATCGTTGTCATGGAGTTCAAT 59.433 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.