Multiple sequence alignment - TraesCS4B01G093800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G093800 chr4B 100.000 2330 0 0 1 2330 96444440 96442111 0.000000e+00 4303.0
1 TraesCS4B01G093800 chr4B 97.504 1362 31 2 1 1359 29879197 29880558 0.000000e+00 2324.0
2 TraesCS4B01G093800 chr4B 81.985 1360 235 9 11 1363 581155186 581153830 0.000000e+00 1146.0
3 TraesCS4B01G093800 chr4B 77.507 369 52 15 1389 1754 460793398 460793738 2.360000e-45 193.0
4 TraesCS4B01G093800 chr1B 92.554 1343 83 7 22 1363 29783202 29781876 0.000000e+00 1910.0
5 TraesCS4B01G093800 chr1B 83.784 74 9 3 2005 2075 432562930 432563003 1.490000e-07 67.6
6 TraesCS4B01G093800 chr1B 97.059 34 1 0 2041 2074 328816511 328816478 8.990000e-05 58.4
7 TraesCS4B01G093800 chr5B 97.143 1120 32 0 1 1120 106304466 106305585 0.000000e+00 1892.0
8 TraesCS4B01G093800 chr5B 80.637 377 63 9 1382 1754 297828542 297828912 1.360000e-72 283.0
9 TraesCS4B01G093800 chr4A 90.574 1358 123 3 5 1360 523356022 523357376 0.000000e+00 1794.0
10 TraesCS4B01G093800 chr2A 90.323 1364 129 2 1 1364 768252718 768251358 0.000000e+00 1784.0
11 TraesCS4B01G093800 chr2A 92.580 566 41 1 1 566 7858679 7859243 0.000000e+00 811.0
12 TraesCS4B01G093800 chr2A 91.111 45 1 3 2041 2085 87391736 87391695 8.990000e-05 58.4
13 TraesCS4B01G093800 chr6B 85.195 1155 152 7 207 1360 123653063 123654199 0.000000e+00 1168.0
14 TraesCS4B01G093800 chr6B 91.818 110 8 1 1645 1754 711314400 711314292 4.010000e-33 152.0
15 TraesCS4B01G093800 chr5A 82.132 1360 232 10 11 1363 700353191 700351836 0.000000e+00 1155.0
16 TraesCS4B01G093800 chr5A 83.333 192 24 6 2028 2217 655793507 655793322 1.110000e-38 171.0
17 TraesCS4B01G093800 chr2B 81.845 1366 238 9 2 1360 712834700 712836062 0.000000e+00 1140.0
18 TraesCS4B01G093800 chr3A 81.625 1366 241 9 2 1360 714546501 714547863 0.000000e+00 1123.0
19 TraesCS4B01G093800 chr3A 93.029 373 25 1 1382 1754 199148492 199148863 5.660000e-151 544.0
20 TraesCS4B01G093800 chr3D 93.566 373 19 5 1382 1754 569120640 569120273 3.380000e-153 551.0
21 TraesCS4B01G093800 chr7A 74.874 199 31 15 1995 2190 3418639 3418821 3.210000e-09 73.1
22 TraesCS4B01G093800 chr2D 96.875 32 1 0 2041 2072 448129604 448129573 1.000000e-03 54.7
23 TraesCS4B01G093800 chr5D 96.774 31 1 0 1704 1734 28040838 28040868 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G093800 chr4B 96442111 96444440 2329 True 4303 4303 100.000 1 2330 1 chr4B.!!$R1 2329
1 TraesCS4B01G093800 chr4B 29879197 29880558 1361 False 2324 2324 97.504 1 1359 1 chr4B.!!$F1 1358
2 TraesCS4B01G093800 chr4B 581153830 581155186 1356 True 1146 1146 81.985 11 1363 1 chr4B.!!$R2 1352
3 TraesCS4B01G093800 chr1B 29781876 29783202 1326 True 1910 1910 92.554 22 1363 1 chr1B.!!$R1 1341
4 TraesCS4B01G093800 chr5B 106304466 106305585 1119 False 1892 1892 97.143 1 1120 1 chr5B.!!$F1 1119
5 TraesCS4B01G093800 chr4A 523356022 523357376 1354 False 1794 1794 90.574 5 1360 1 chr4A.!!$F1 1355
6 TraesCS4B01G093800 chr2A 768251358 768252718 1360 True 1784 1784 90.323 1 1364 1 chr2A.!!$R2 1363
7 TraesCS4B01G093800 chr2A 7858679 7859243 564 False 811 811 92.580 1 566 1 chr2A.!!$F1 565
8 TraesCS4B01G093800 chr6B 123653063 123654199 1136 False 1168 1168 85.195 207 1360 1 chr6B.!!$F1 1153
9 TraesCS4B01G093800 chr5A 700351836 700353191 1355 True 1155 1155 82.132 11 1363 1 chr5A.!!$R2 1352
10 TraesCS4B01G093800 chr2B 712834700 712836062 1362 False 1140 1140 81.845 2 1360 1 chr2B.!!$F1 1358
11 TraesCS4B01G093800 chr3A 714546501 714547863 1362 False 1123 1123 81.625 2 1360 1 chr3A.!!$F2 1358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 498 1.409064 TGACACTCGATGCCCTATGTC 59.591 52.381 0.0 0.0 37.54 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1479 0.034337 TTTTACGCGCTGGAGTTCCT 59.966 50.0 5.73 0.0 36.82 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 7.013834 TCATCACCCAAAAGGGTAATAACTTT 58.986 34.615 5.77 0.00 40.77 2.66
193 194 7.222999 CGGAAGATACAAGAGTTATCCTTCAAC 59.777 40.741 0.00 0.00 0.00 3.18
494 498 1.409064 TGACACTCGATGCCCTATGTC 59.591 52.381 0.00 0.00 37.54 3.06
713 719 6.774170 TGGCATGAGAGAAATAGTGCAAATAT 59.226 34.615 0.00 0.00 34.45 1.28
981 990 1.551883 GAATGGGTGGCTGATGCTTTT 59.448 47.619 0.00 0.00 39.59 2.27
1187 1196 1.678627 TGCGTGTGTTGTAAATTGCCT 59.321 42.857 0.00 0.00 0.00 4.75
1315 1326 3.449227 TAGCTGGCGACCTGTCCG 61.449 66.667 0.00 0.00 0.00 4.79
1360 1372 5.350914 TGCAAGTGTGTTCCATTTCAAAAAG 59.649 36.000 0.00 0.00 0.00 2.27
1363 1375 7.674705 GCAAGTGTGTTCCATTTCAAAAAGAAG 60.675 37.037 0.00 0.00 37.57 2.85
1364 1376 6.340522 AGTGTGTTCCATTTCAAAAAGAAGG 58.659 36.000 0.00 0.00 37.57 3.46
1365 1377 5.523552 GTGTGTTCCATTTCAAAAAGAAGGG 59.476 40.000 0.00 0.00 37.57 3.95
1366 1378 5.056480 GTGTTCCATTTCAAAAAGAAGGGG 58.944 41.667 0.00 0.00 37.57 4.79
1367 1379 4.965532 TGTTCCATTTCAAAAAGAAGGGGA 59.034 37.500 0.00 0.00 38.04 4.81
1368 1380 5.070313 TGTTCCATTTCAAAAAGAAGGGGAG 59.930 40.000 0.00 0.00 39.73 4.30
1369 1381 3.578282 TCCATTTCAAAAAGAAGGGGAGC 59.422 43.478 0.00 0.00 36.16 4.70
1370 1382 3.580022 CCATTTCAAAAAGAAGGGGAGCT 59.420 43.478 0.00 0.00 37.57 4.09
1371 1383 4.322273 CCATTTCAAAAAGAAGGGGAGCTC 60.322 45.833 4.71 4.71 37.57 4.09
1372 1384 2.586648 TCAAAAAGAAGGGGAGCTCC 57.413 50.000 25.59 25.59 0.00 4.70
1373 1385 2.065799 TCAAAAAGAAGGGGAGCTCCT 58.934 47.619 31.36 13.11 39.17 3.69
1374 1386 3.256704 TCAAAAAGAAGGGGAGCTCCTA 58.743 45.455 31.36 0.00 35.80 2.94
1375 1387 3.009143 TCAAAAAGAAGGGGAGCTCCTAC 59.991 47.826 31.36 23.51 35.80 3.18
1376 1388 2.344093 AAAGAAGGGGAGCTCCTACA 57.656 50.000 31.36 0.00 35.80 2.74
1377 1389 2.577772 AAGAAGGGGAGCTCCTACAT 57.422 50.000 31.36 17.80 35.80 2.29
1378 1390 1.799933 AGAAGGGGAGCTCCTACATG 58.200 55.000 31.36 0.00 35.80 3.21
1379 1391 0.761802 GAAGGGGAGCTCCTACATGG 59.238 60.000 31.36 0.00 35.80 3.66
1380 1392 1.348775 AAGGGGAGCTCCTACATGGC 61.349 60.000 31.36 13.25 35.80 4.40
1381 1393 2.423446 GGGAGCTCCTACATGGCG 59.577 66.667 31.36 0.00 35.95 5.69
1382 1394 2.423446 GGAGCTCCTACATGGCGG 59.577 66.667 26.25 0.00 35.26 6.13
1383 1395 2.423446 GAGCTCCTACATGGCGGG 59.577 66.667 0.87 0.00 35.26 6.13
1384 1396 2.041922 AGCTCCTACATGGCGGGA 60.042 61.111 0.00 0.42 35.26 5.14
1385 1397 2.109181 GCTCCTACATGGCGGGAC 59.891 66.667 0.00 0.00 35.26 4.46
1386 1398 2.435693 GCTCCTACATGGCGGGACT 61.436 63.158 0.00 0.00 35.26 3.85
1387 1399 1.742768 CTCCTACATGGCGGGACTC 59.257 63.158 0.00 0.00 35.26 3.36
1388 1400 1.749334 CTCCTACATGGCGGGACTCC 61.749 65.000 0.00 0.00 35.26 3.85
1389 1401 2.808206 CCTACATGGCGGGACTCCC 61.808 68.421 3.63 3.63 41.09 4.30
1390 1402 1.762460 CTACATGGCGGGACTCCCT 60.762 63.158 12.62 0.00 42.67 4.20
1391 1403 2.032860 CTACATGGCGGGACTCCCTG 62.033 65.000 12.62 6.08 42.67 4.45
1392 1404 2.815684 TACATGGCGGGACTCCCTGT 62.816 60.000 12.62 11.55 43.93 4.00
1393 1405 3.083997 ATGGCGGGACTCCCTGTC 61.084 66.667 12.62 7.93 42.67 3.51
1394 1406 3.625632 ATGGCGGGACTCCCTGTCT 62.626 63.158 12.62 0.00 43.89 3.41
1395 1407 3.775654 GGCGGGACTCCCTGTCTG 61.776 72.222 12.62 0.00 42.67 3.51
1396 1408 2.680352 GCGGGACTCCCTGTCTGA 60.680 66.667 12.62 0.00 42.67 3.27
1397 1409 3.007973 GCGGGACTCCCTGTCTGAC 62.008 68.421 12.62 0.00 42.67 3.51
1398 1410 2.701780 CGGGACTCCCTGTCTGACG 61.702 68.421 12.62 0.00 42.67 4.35
1399 1411 2.574399 GGACTCCCTGTCTGACGC 59.426 66.667 2.98 0.00 44.74 5.19
1400 1412 1.979693 GGACTCCCTGTCTGACGCT 60.980 63.158 2.98 0.00 44.74 5.07
1401 1413 1.509004 GACTCCCTGTCTGACGCTC 59.491 63.158 2.98 0.00 42.21 5.03
1402 1414 2.259875 GACTCCCTGTCTGACGCTCG 62.260 65.000 2.98 0.00 42.21 5.03
1403 1415 2.282251 TCCCTGTCTGACGCTCGT 60.282 61.111 2.98 0.00 0.00 4.18
1404 1416 1.867919 CTCCCTGTCTGACGCTCGTT 61.868 60.000 2.98 0.00 0.00 3.85
1405 1417 0.607217 TCCCTGTCTGACGCTCGTTA 60.607 55.000 2.98 0.00 0.00 3.18
1406 1418 0.179161 CCCTGTCTGACGCTCGTTAG 60.179 60.000 7.73 7.73 33.68 2.34
1407 1419 0.798771 CCTGTCTGACGCTCGTTAGC 60.799 60.000 9.00 5.76 45.86 3.09
1421 1433 2.572173 GTTAGCGTCAAACGAAGGTG 57.428 50.000 3.28 0.00 46.05 4.00
1422 1434 0.863144 TTAGCGTCAAACGAAGGTGC 59.137 50.000 3.28 0.00 46.05 5.01
1423 1435 1.279527 TAGCGTCAAACGAAGGTGCG 61.280 55.000 3.28 0.00 46.05 5.34
1424 1436 2.127758 CGTCAAACGAAGGTGCGC 60.128 61.111 0.00 0.00 46.05 6.09
1425 1437 2.594962 CGTCAAACGAAGGTGCGCT 61.595 57.895 9.73 0.00 46.05 5.92
1426 1438 1.204312 GTCAAACGAAGGTGCGCTC 59.796 57.895 9.73 4.47 33.86 5.03
1427 1439 2.170985 CAAACGAAGGTGCGCTCG 59.829 61.111 14.33 14.33 40.87 5.03
1428 1440 3.712881 AAACGAAGGTGCGCTCGC 61.713 61.111 15.63 7.38 38.64 5.03
1429 1441 4.664677 AACGAAGGTGCGCTCGCT 62.665 61.111 15.63 1.85 42.51 4.93
1432 1444 2.738521 GAAGGTGCGCTCGCTGAA 60.739 61.111 9.73 0.00 42.51 3.02
1433 1445 2.734673 GAAGGTGCGCTCGCTGAAG 61.735 63.158 9.73 0.00 42.51 3.02
1434 1446 4.749310 AGGTGCGCTCGCTGAAGG 62.749 66.667 9.73 0.00 42.51 3.46
1436 1448 2.126071 GTGCGCTCGCTGAAGGTA 60.126 61.111 9.73 0.00 42.51 3.08
1437 1449 2.161486 GTGCGCTCGCTGAAGGTAG 61.161 63.158 9.73 0.00 42.51 3.18
1438 1450 2.340328 TGCGCTCGCTGAAGGTAGA 61.340 57.895 9.73 0.00 42.51 2.59
1439 1451 1.066587 GCGCTCGCTGAAGGTAGAT 59.933 57.895 0.00 0.00 38.26 1.98
1440 1452 0.311165 GCGCTCGCTGAAGGTAGATA 59.689 55.000 0.00 0.00 38.26 1.98
1441 1453 1.926827 GCGCTCGCTGAAGGTAGATAC 60.927 57.143 0.00 0.00 38.26 2.24
1442 1454 1.333931 CGCTCGCTGAAGGTAGATACA 59.666 52.381 0.00 0.00 0.00 2.29
1443 1455 2.733517 GCTCGCTGAAGGTAGATACAC 58.266 52.381 0.00 0.00 0.00 2.90
1444 1456 2.099263 GCTCGCTGAAGGTAGATACACA 59.901 50.000 0.00 0.00 0.00 3.72
1445 1457 3.243569 GCTCGCTGAAGGTAGATACACAT 60.244 47.826 0.00 0.00 0.00 3.21
1446 1458 4.294232 CTCGCTGAAGGTAGATACACATG 58.706 47.826 0.00 0.00 0.00 3.21
1447 1459 3.068165 TCGCTGAAGGTAGATACACATGG 59.932 47.826 0.00 0.00 0.00 3.66
1448 1460 3.733337 GCTGAAGGTAGATACACATGGG 58.267 50.000 0.00 0.00 0.00 4.00
1449 1461 3.733337 CTGAAGGTAGATACACATGGGC 58.267 50.000 0.00 0.00 0.00 5.36
1450 1462 2.438021 TGAAGGTAGATACACATGGGCC 59.562 50.000 0.00 0.00 0.00 5.80
1451 1463 1.048601 AGGTAGATACACATGGGCCG 58.951 55.000 0.00 0.00 0.00 6.13
1452 1464 0.034896 GGTAGATACACATGGGCCGG 59.965 60.000 0.00 0.00 0.00 6.13
1453 1465 0.602905 GTAGATACACATGGGCCGGC 60.603 60.000 21.18 21.18 0.00 6.13
1454 1466 1.764571 TAGATACACATGGGCCGGCC 61.765 60.000 38.57 38.57 0.00 6.13
1465 1477 4.759205 GCCGGCCCATTTGGAGGT 62.759 66.667 18.11 0.00 36.25 3.85
1466 1478 2.440247 CCGGCCCATTTGGAGGTC 60.440 66.667 0.00 0.00 37.39 3.85
1467 1479 2.354729 CGGCCCATTTGGAGGTCA 59.645 61.111 0.00 0.00 37.39 4.02
1468 1480 1.750399 CGGCCCATTTGGAGGTCAG 60.750 63.158 0.00 0.00 37.39 3.51
1469 1481 1.380380 GGCCCATTTGGAGGTCAGG 60.380 63.158 0.00 0.00 37.39 3.86
1470 1482 1.691219 GCCCATTTGGAGGTCAGGA 59.309 57.895 0.00 0.00 37.39 3.86
1471 1483 0.039618 GCCCATTTGGAGGTCAGGAA 59.960 55.000 0.00 0.00 37.39 3.36
1472 1484 1.839424 CCCATTTGGAGGTCAGGAAC 58.161 55.000 0.00 0.00 37.39 3.62
1473 1485 1.355720 CCCATTTGGAGGTCAGGAACT 59.644 52.381 0.00 0.00 36.54 3.01
1474 1486 2.619074 CCCATTTGGAGGTCAGGAACTC 60.619 54.545 5.77 5.77 44.27 3.01
1479 1491 1.216710 GAGGTCAGGAACTCCAGCG 59.783 63.158 2.86 0.00 39.20 5.18
1480 1492 2.435059 GGTCAGGAACTCCAGCGC 60.435 66.667 0.00 0.00 34.60 5.92
1481 1493 2.811317 GTCAGGAACTCCAGCGCG 60.811 66.667 0.00 0.00 34.60 6.86
1482 1494 3.303135 TCAGGAACTCCAGCGCGT 61.303 61.111 8.43 0.00 34.60 6.01
1483 1495 1.974875 TCAGGAACTCCAGCGCGTA 60.975 57.895 8.43 0.00 34.60 4.42
1484 1496 1.080093 CAGGAACTCCAGCGCGTAA 60.080 57.895 8.43 0.00 34.60 3.18
1485 1497 0.669318 CAGGAACTCCAGCGCGTAAA 60.669 55.000 8.43 0.00 34.60 2.01
1486 1498 0.034337 AGGAACTCCAGCGCGTAAAA 59.966 50.000 8.43 0.00 38.89 1.52
1487 1499 1.084289 GGAACTCCAGCGCGTAAAAT 58.916 50.000 8.43 0.00 35.64 1.82
1488 1500 2.093869 AGGAACTCCAGCGCGTAAAATA 60.094 45.455 8.43 0.00 38.89 1.40
1489 1501 2.870411 GGAACTCCAGCGCGTAAAATAT 59.130 45.455 8.43 0.00 35.64 1.28
1490 1502 3.059800 GGAACTCCAGCGCGTAAAATATC 60.060 47.826 8.43 0.00 35.64 1.63
1491 1503 2.124903 ACTCCAGCGCGTAAAATATCG 58.875 47.619 8.43 0.00 0.00 2.92
1504 1516 8.950590 GCGTAAAATATCGCCAAAAATAAAAG 57.049 30.769 0.00 0.00 45.54 2.27
1505 1517 8.800031 GCGTAAAATATCGCCAAAAATAAAAGA 58.200 29.630 0.00 0.00 45.54 2.52
1509 1521 8.702163 AAATATCGCCAAAAATAAAAGAGGTG 57.298 30.769 0.00 0.00 0.00 4.00
1510 1522 4.513198 TCGCCAAAAATAAAAGAGGTGG 57.487 40.909 0.00 0.00 0.00 4.61
1511 1523 2.993220 CGCCAAAAATAAAAGAGGTGGC 59.007 45.455 1.65 1.65 45.25 5.01
1512 1524 3.334691 GCCAAAAATAAAAGAGGTGGCC 58.665 45.455 0.00 0.00 43.41 5.36
1513 1525 3.244387 GCCAAAAATAAAAGAGGTGGCCA 60.244 43.478 0.00 0.00 43.41 5.36
1514 1526 4.568956 CCAAAAATAAAAGAGGTGGCCAG 58.431 43.478 5.11 0.00 0.00 4.85
1515 1527 4.283212 CCAAAAATAAAAGAGGTGGCCAGA 59.717 41.667 5.11 0.00 0.00 3.86
1516 1528 5.046376 CCAAAAATAAAAGAGGTGGCCAGAT 60.046 40.000 5.11 0.00 0.00 2.90
1517 1529 6.154363 CCAAAAATAAAAGAGGTGGCCAGATA 59.846 38.462 5.11 0.00 0.00 1.98
1518 1530 7.147672 CCAAAAATAAAAGAGGTGGCCAGATAT 60.148 37.037 5.11 0.00 0.00 1.63
1519 1531 7.588497 AAAATAAAAGAGGTGGCCAGATATC 57.412 36.000 5.11 1.37 0.00 1.63
1520 1532 2.918712 AAAGAGGTGGCCAGATATCG 57.081 50.000 5.11 0.00 0.00 2.92
1521 1533 2.088104 AAGAGGTGGCCAGATATCGA 57.912 50.000 5.11 0.00 0.00 3.59
1522 1534 2.088104 AGAGGTGGCCAGATATCGAA 57.912 50.000 5.11 0.00 0.00 3.71
1523 1535 1.689273 AGAGGTGGCCAGATATCGAAC 59.311 52.381 5.11 0.00 0.00 3.95
1524 1536 1.689273 GAGGTGGCCAGATATCGAACT 59.311 52.381 5.11 0.00 0.00 3.01
1525 1537 1.689273 AGGTGGCCAGATATCGAACTC 59.311 52.381 5.11 0.00 0.00 3.01
1526 1538 1.412710 GGTGGCCAGATATCGAACTCA 59.587 52.381 5.11 0.00 0.00 3.41
1527 1539 2.037772 GGTGGCCAGATATCGAACTCAT 59.962 50.000 5.11 0.00 0.00 2.90
1528 1540 3.062763 GTGGCCAGATATCGAACTCATG 58.937 50.000 5.11 0.00 0.00 3.07
1529 1541 2.965147 TGGCCAGATATCGAACTCATGA 59.035 45.455 0.00 0.00 0.00 3.07
1530 1542 3.243873 TGGCCAGATATCGAACTCATGAC 60.244 47.826 0.00 0.00 0.00 3.06
1531 1543 2.983136 GCCAGATATCGAACTCATGACG 59.017 50.000 0.00 0.00 0.00 4.35
1532 1544 3.551046 GCCAGATATCGAACTCATGACGT 60.551 47.826 4.38 0.00 0.00 4.34
1533 1545 3.977579 CCAGATATCGAACTCATGACGTG 59.022 47.826 0.00 0.00 0.00 4.49
1534 1546 3.423536 CAGATATCGAACTCATGACGTGC 59.576 47.826 0.00 0.00 0.00 5.34
1535 1547 2.203800 TATCGAACTCATGACGTGCC 57.796 50.000 0.00 0.00 0.00 5.01
1536 1548 0.802222 ATCGAACTCATGACGTGCCG 60.802 55.000 0.00 8.31 0.00 5.69
1537 1549 1.733041 CGAACTCATGACGTGCCGT 60.733 57.895 0.00 0.00 45.10 5.68
1538 1550 1.282248 CGAACTCATGACGTGCCGTT 61.282 55.000 0.00 0.00 41.37 4.44
1539 1551 0.438830 GAACTCATGACGTGCCGTTC 59.561 55.000 0.00 7.31 41.37 3.95
1540 1552 1.282248 AACTCATGACGTGCCGTTCG 61.282 55.000 0.00 0.00 41.37 3.95
1541 1553 1.733041 CTCATGACGTGCCGTTCGT 60.733 57.895 0.00 0.00 41.37 3.85
1542 1554 1.944699 CTCATGACGTGCCGTTCGTG 61.945 60.000 0.00 7.15 41.37 4.35
1543 1555 2.019408 CATGACGTGCCGTTCGTGA 61.019 57.895 0.00 0.00 41.37 4.35
1544 1556 1.300311 ATGACGTGCCGTTCGTGAA 60.300 52.632 0.00 0.00 41.37 3.18
1545 1557 1.282248 ATGACGTGCCGTTCGTGAAG 61.282 55.000 0.00 0.00 41.37 3.02
1546 1558 1.947642 GACGTGCCGTTCGTGAAGT 60.948 57.895 0.00 0.00 41.37 3.01
1547 1559 1.873355 GACGTGCCGTTCGTGAAGTC 61.873 60.000 0.00 0.00 41.37 3.01
1548 1560 1.660575 CGTGCCGTTCGTGAAGTCT 60.661 57.895 0.00 0.00 0.00 3.24
1549 1561 0.386352 CGTGCCGTTCGTGAAGTCTA 60.386 55.000 0.00 0.00 0.00 2.59
1550 1562 1.337821 GTGCCGTTCGTGAAGTCTAG 58.662 55.000 0.00 0.00 0.00 2.43
1551 1563 1.068748 GTGCCGTTCGTGAAGTCTAGA 60.069 52.381 0.00 0.00 0.00 2.43
1552 1564 1.610038 TGCCGTTCGTGAAGTCTAGAA 59.390 47.619 0.00 0.00 0.00 2.10
1553 1565 1.984297 GCCGTTCGTGAAGTCTAGAAC 59.016 52.381 0.00 8.44 39.46 3.01
1554 1566 2.593257 CCGTTCGTGAAGTCTAGAACC 58.407 52.381 0.00 0.00 39.63 3.62
1555 1567 2.228343 CCGTTCGTGAAGTCTAGAACCT 59.772 50.000 0.00 0.00 39.63 3.50
1556 1568 3.438087 CCGTTCGTGAAGTCTAGAACCTA 59.562 47.826 0.00 0.00 39.63 3.08
1557 1569 4.401714 CGTTCGTGAAGTCTAGAACCTAC 58.598 47.826 0.00 0.00 39.63 3.18
1558 1570 4.671250 CGTTCGTGAAGTCTAGAACCTACC 60.671 50.000 0.00 0.00 39.63 3.18
1559 1571 4.025040 TCGTGAAGTCTAGAACCTACCA 57.975 45.455 0.00 0.00 0.00 3.25
1560 1572 4.401022 TCGTGAAGTCTAGAACCTACCAA 58.599 43.478 0.00 0.00 0.00 3.67
1561 1573 5.014858 TCGTGAAGTCTAGAACCTACCAAT 58.985 41.667 0.00 0.00 0.00 3.16
1562 1574 5.125097 TCGTGAAGTCTAGAACCTACCAATC 59.875 44.000 0.00 0.00 0.00 2.67
1563 1575 5.341617 GTGAAGTCTAGAACCTACCAATCG 58.658 45.833 0.00 0.00 0.00 3.34
1564 1576 4.401519 TGAAGTCTAGAACCTACCAATCGG 59.598 45.833 0.00 0.00 38.77 4.18
1565 1577 3.297736 AGTCTAGAACCTACCAATCGGG 58.702 50.000 0.00 0.00 44.81 5.14
1566 1578 2.037144 TCTAGAACCTACCAATCGGGC 58.963 52.381 0.00 0.00 42.05 6.13
1567 1579 2.040178 CTAGAACCTACCAATCGGGCT 58.960 52.381 0.00 0.00 42.05 5.19
1568 1580 0.541863 AGAACCTACCAATCGGGCTG 59.458 55.000 0.00 0.00 42.05 4.85
1569 1581 0.539986 GAACCTACCAATCGGGCTGA 59.460 55.000 0.00 0.00 42.05 4.26
1570 1582 0.988832 AACCTACCAATCGGGCTGAA 59.011 50.000 0.00 0.00 42.05 3.02
1571 1583 0.988832 ACCTACCAATCGGGCTGAAA 59.011 50.000 0.00 0.00 42.05 2.69
1572 1584 1.339727 ACCTACCAATCGGGCTGAAAC 60.340 52.381 0.00 0.00 42.05 2.78
1573 1585 1.006832 CTACCAATCGGGCTGAAACG 58.993 55.000 0.00 0.00 42.05 3.60
1574 1586 0.322322 TACCAATCGGGCTGAAACGT 59.678 50.000 0.00 0.00 42.05 3.99
1575 1587 0.536460 ACCAATCGGGCTGAAACGTT 60.536 50.000 0.00 0.00 42.05 3.99
1576 1588 0.596082 CCAATCGGGCTGAAACGTTT 59.404 50.000 14.57 14.57 0.00 3.60
1577 1589 1.000717 CCAATCGGGCTGAAACGTTTT 60.001 47.619 15.89 0.00 0.00 2.43
1578 1590 2.226912 CCAATCGGGCTGAAACGTTTTA 59.773 45.455 15.89 10.35 0.00 1.52
1579 1591 3.231160 CAATCGGGCTGAAACGTTTTAC 58.769 45.455 15.89 7.59 0.00 2.01
1592 1604 3.176201 CGTTTTACGTGCTTGTATGCA 57.824 42.857 0.00 0.00 36.74 3.96
1593 1605 3.152983 CGTTTTACGTGCTTGTATGCAG 58.847 45.455 0.00 0.00 44.20 4.41
1594 1606 2.892373 TTTACGTGCTTGTATGCAGC 57.108 45.000 0.00 0.00 44.20 5.25
1595 1607 0.718904 TTACGTGCTTGTATGCAGCG 59.281 50.000 0.00 0.00 44.20 5.18
1596 1608 1.692148 TACGTGCTTGTATGCAGCGC 61.692 55.000 0.00 0.00 44.20 5.92
1597 1609 2.276868 GTGCTTGTATGCAGCGCG 60.277 61.111 0.00 0.00 44.20 6.86
1598 1610 2.434011 TGCTTGTATGCAGCGCGA 60.434 55.556 12.10 0.00 38.12 5.87
1599 1611 2.322422 GCTTGTATGCAGCGCGAG 59.678 61.111 12.10 1.41 0.00 5.03
1612 1624 2.856089 CGCGAGCTCTAAAGTACCG 58.144 57.895 12.85 0.00 0.00 4.02
1613 1625 0.376152 CGCGAGCTCTAAAGTACCGA 59.624 55.000 12.85 0.00 0.00 4.69
1614 1626 1.202110 CGCGAGCTCTAAAGTACCGAA 60.202 52.381 12.85 0.00 0.00 4.30
1615 1627 2.183636 GCGAGCTCTAAAGTACCGAAC 58.816 52.381 12.85 0.00 0.00 3.95
1616 1628 2.415090 GCGAGCTCTAAAGTACCGAACA 60.415 50.000 12.85 0.00 0.00 3.18
1617 1629 3.734293 GCGAGCTCTAAAGTACCGAACAT 60.734 47.826 12.85 0.00 0.00 2.71
1618 1630 4.497006 GCGAGCTCTAAAGTACCGAACATA 60.497 45.833 12.85 0.00 0.00 2.29
1619 1631 5.759963 CGAGCTCTAAAGTACCGAACATAT 58.240 41.667 12.85 0.00 0.00 1.78
1620 1632 6.207213 CGAGCTCTAAAGTACCGAACATATT 58.793 40.000 12.85 0.00 0.00 1.28
1621 1633 6.696148 CGAGCTCTAAAGTACCGAACATATTT 59.304 38.462 12.85 0.00 0.00 1.40
1622 1634 7.222224 CGAGCTCTAAAGTACCGAACATATTTT 59.778 37.037 12.85 0.00 0.00 1.82
1623 1635 8.421673 AGCTCTAAAGTACCGAACATATTTTC 57.578 34.615 0.00 0.00 0.00 2.29
1624 1636 8.038944 AGCTCTAAAGTACCGAACATATTTTCA 58.961 33.333 2.71 0.00 0.00 2.69
1625 1637 8.662141 GCTCTAAAGTACCGAACATATTTTCAA 58.338 33.333 2.71 0.00 0.00 2.69
1653 1665 9.766277 TTTTTCGAACAATTTTCAAAAATCAGG 57.234 25.926 0.00 0.00 37.62 3.86
1654 1666 8.709386 TTTCGAACAATTTTCAAAAATCAGGA 57.291 26.923 0.00 0.00 37.62 3.86
1655 1667 8.709386 TTCGAACAATTTTCAAAAATCAGGAA 57.291 26.923 0.00 0.72 37.62 3.36
1656 1668 8.125728 TCGAACAATTTTCAAAAATCAGGAAC 57.874 30.769 1.43 0.00 37.62 3.62
1657 1669 7.761704 TCGAACAATTTTCAAAAATCAGGAACA 59.238 29.630 1.43 0.00 37.62 3.18
1658 1670 8.386606 CGAACAATTTTCAAAAATCAGGAACAA 58.613 29.630 1.43 0.00 37.62 2.83
1693 1705 9.980780 AAAATTCTGGACAAAATTTTACAAACG 57.019 25.926 2.44 0.00 41.10 3.60
1694 1706 8.710835 AATTCTGGACAAAATTTTACAAACGT 57.289 26.923 2.44 0.00 0.00 3.99
1695 1707 7.513190 TTCTGGACAAAATTTTACAAACGTG 57.487 32.000 2.44 0.00 0.00 4.49
1696 1708 6.853720 TCTGGACAAAATTTTACAAACGTGA 58.146 32.000 2.44 0.00 0.00 4.35
1697 1709 7.313646 TCTGGACAAAATTTTACAAACGTGAA 58.686 30.769 2.44 0.00 0.00 3.18
1698 1710 7.273815 TCTGGACAAAATTTTACAAACGTGAAC 59.726 33.333 2.44 0.00 0.00 3.18
1699 1711 6.866770 TGGACAAAATTTTACAAACGTGAACA 59.133 30.769 2.44 0.00 0.00 3.18
1700 1712 7.148787 TGGACAAAATTTTACAAACGTGAACAC 60.149 33.333 2.44 0.00 0.00 3.32
1701 1713 7.062488 GGACAAAATTTTACAAACGTGAACACT 59.938 33.333 2.44 0.00 0.00 3.55
1702 1714 8.967552 ACAAAATTTTACAAACGTGAACACTA 57.032 26.923 2.44 0.00 0.00 2.74
1703 1715 9.575783 ACAAAATTTTACAAACGTGAACACTAT 57.424 25.926 2.44 0.00 0.00 2.12
1711 1723 7.974243 ACAAACGTGAACACTATTTAAAACC 57.026 32.000 0.00 0.00 0.00 3.27
1712 1724 7.536855 ACAAACGTGAACACTATTTAAAACCA 58.463 30.769 0.00 0.00 0.00 3.67
1713 1725 8.192110 ACAAACGTGAACACTATTTAAAACCAT 58.808 29.630 0.00 0.00 0.00 3.55
1714 1726 8.476142 CAAACGTGAACACTATTTAAAACCATG 58.524 33.333 0.00 0.00 0.00 3.66
1715 1727 7.499321 ACGTGAACACTATTTAAAACCATGA 57.501 32.000 0.00 0.00 0.00 3.07
1716 1728 7.932335 ACGTGAACACTATTTAAAACCATGAA 58.068 30.769 0.00 0.00 0.00 2.57
1717 1729 7.858879 ACGTGAACACTATTTAAAACCATGAAC 59.141 33.333 0.00 0.00 0.00 3.18
1718 1730 7.858382 CGTGAACACTATTTAAAACCATGAACA 59.142 33.333 0.00 0.00 0.00 3.18
1719 1731 9.691362 GTGAACACTATTTAAAACCATGAACAT 57.309 29.630 0.00 0.00 0.00 2.71
1755 1767 8.798748 TTGAACAAACTTTTAAAACGTGAAGA 57.201 26.923 0.00 0.00 0.00 2.87
1756 1768 8.442605 TGAACAAACTTTTAAAACGTGAAGAG 57.557 30.769 0.00 0.00 0.00 2.85
1757 1769 7.539366 TGAACAAACTTTTAAAACGTGAAGAGG 59.461 33.333 0.00 0.00 0.00 3.69
1758 1770 7.148355 ACAAACTTTTAAAACGTGAAGAGGA 57.852 32.000 0.00 0.00 0.00 3.71
1759 1771 7.768240 ACAAACTTTTAAAACGTGAAGAGGAT 58.232 30.769 0.00 0.00 0.00 3.24
1760 1772 7.913821 ACAAACTTTTAAAACGTGAAGAGGATC 59.086 33.333 0.00 0.00 0.00 3.36
1761 1773 6.555812 ACTTTTAAAACGTGAAGAGGATCC 57.444 37.500 2.48 2.48 33.66 3.36
1762 1774 6.059484 ACTTTTAAAACGTGAAGAGGATCCA 58.941 36.000 15.82 0.00 33.66 3.41
1763 1775 5.934935 TTTAAAACGTGAAGAGGATCCAC 57.065 39.130 15.82 8.01 33.66 4.02
1764 1776 2.474410 AAACGTGAAGAGGATCCACC 57.526 50.000 15.82 5.21 33.66 4.61
1765 1777 0.613777 AACGTGAAGAGGATCCACCC 59.386 55.000 15.82 3.38 40.05 4.61
1766 1778 0.252284 ACGTGAAGAGGATCCACCCT 60.252 55.000 15.82 4.97 40.05 4.34
1767 1779 1.006758 ACGTGAAGAGGATCCACCCTA 59.993 52.381 15.82 0.00 40.05 3.53
1768 1780 1.409427 CGTGAAGAGGATCCACCCTAC 59.591 57.143 15.82 6.47 40.05 3.18
1769 1781 2.467880 GTGAAGAGGATCCACCCTACA 58.532 52.381 15.82 3.51 40.05 2.74
1770 1782 3.041946 GTGAAGAGGATCCACCCTACAT 58.958 50.000 15.82 0.00 40.05 2.29
1771 1783 3.041211 TGAAGAGGATCCACCCTACATG 58.959 50.000 15.82 0.00 40.05 3.21
1772 1784 2.109229 AGAGGATCCACCCTACATGG 57.891 55.000 15.82 0.00 40.05 3.66
1773 1785 0.398318 GAGGATCCACCCTACATGGC 59.602 60.000 15.82 0.00 40.05 4.40
1774 1786 1.071471 GGATCCACCCTACATGGCG 59.929 63.158 6.95 0.00 37.13 5.69
1775 1787 1.598130 GATCCACCCTACATGGCGC 60.598 63.158 0.00 0.00 37.13 6.53
1776 1788 2.044806 GATCCACCCTACATGGCGCT 62.045 60.000 7.64 0.00 37.13 5.92
1777 1789 1.635817 ATCCACCCTACATGGCGCTT 61.636 55.000 7.64 0.00 37.13 4.68
1778 1790 1.819632 CCACCCTACATGGCGCTTC 60.820 63.158 7.64 0.00 0.00 3.86
1779 1791 1.819632 CACCCTACATGGCGCTTCC 60.820 63.158 7.64 0.00 0.00 3.46
1780 1792 1.995626 ACCCTACATGGCGCTTCCT 60.996 57.895 7.64 0.00 35.26 3.36
1781 1793 1.227674 CCCTACATGGCGCTTCCTC 60.228 63.158 7.64 0.00 35.26 3.71
1782 1794 1.690219 CCCTACATGGCGCTTCCTCT 61.690 60.000 7.64 0.00 35.26 3.69
1783 1795 0.179000 CCTACATGGCGCTTCCTCTT 59.821 55.000 7.64 0.00 35.26 2.85
1784 1796 1.293924 CTACATGGCGCTTCCTCTTG 58.706 55.000 7.64 0.88 35.26 3.02
1785 1797 0.107703 TACATGGCGCTTCCTCTTGG 60.108 55.000 7.64 0.00 35.26 3.61
1786 1798 2.439156 ATGGCGCTTCCTCTTGGC 60.439 61.111 7.64 0.00 35.26 4.52
1787 1799 4.722700 TGGCGCTTCCTCTTGGCC 62.723 66.667 7.64 0.00 44.00 5.36
1788 1800 4.416738 GGCGCTTCCTCTTGGCCT 62.417 66.667 7.64 0.00 40.59 5.19
1789 1801 3.130160 GCGCTTCCTCTTGGCCTG 61.130 66.667 3.32 0.00 0.00 4.85
1790 1802 3.130160 CGCTTCCTCTTGGCCTGC 61.130 66.667 3.32 0.00 0.00 4.85
1791 1803 2.753446 GCTTCCTCTTGGCCTGCC 60.753 66.667 3.32 0.00 0.00 4.85
1792 1804 2.044551 CTTCCTCTTGGCCTGCCC 60.045 66.667 3.32 0.00 34.56 5.36
1793 1805 3.651980 CTTCCTCTTGGCCTGCCCC 62.652 68.421 3.32 0.00 34.56 5.80
1795 1807 3.747579 CCTCTTGGCCTGCCCCAT 61.748 66.667 3.32 0.00 34.21 4.00
1796 1808 2.441532 CTCTTGGCCTGCCCCATG 60.442 66.667 3.32 0.00 34.21 3.66
1797 1809 4.764771 TCTTGGCCTGCCCCATGC 62.765 66.667 3.32 0.00 41.77 4.06
1822 1834 4.475527 AGGACGCCACCTGTTTTC 57.524 55.556 0.00 0.00 39.01 2.29
1823 1835 1.837090 AGGACGCCACCTGTTTTCT 59.163 52.632 0.00 0.00 39.01 2.52
1824 1836 0.182775 AGGACGCCACCTGTTTTCTT 59.817 50.000 0.00 0.00 39.01 2.52
1825 1837 1.029681 GGACGCCACCTGTTTTCTTT 58.970 50.000 0.00 0.00 0.00 2.52
1826 1838 1.407618 GGACGCCACCTGTTTTCTTTT 59.592 47.619 0.00 0.00 0.00 2.27
1827 1839 2.159156 GGACGCCACCTGTTTTCTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
1959 1971 8.925161 TTTTCAAGAAATCAAAAACTGATCGT 57.075 26.923 0.00 0.00 44.43 3.73
1960 1972 7.912949 TTCAAGAAATCAAAAACTGATCGTG 57.087 32.000 0.00 0.00 44.43 4.35
1961 1973 7.258022 TCAAGAAATCAAAAACTGATCGTGA 57.742 32.000 0.00 0.00 44.43 4.35
1962 1974 7.702386 TCAAGAAATCAAAAACTGATCGTGAA 58.298 30.769 0.00 0.00 44.43 3.18
1963 1975 7.643764 TCAAGAAATCAAAAACTGATCGTGAAC 59.356 33.333 0.00 0.00 44.43 3.18
1964 1976 7.264373 AGAAATCAAAAACTGATCGTGAACT 57.736 32.000 0.00 0.00 44.43 3.01
1965 1977 7.355778 AGAAATCAAAAACTGATCGTGAACTC 58.644 34.615 0.00 0.00 44.43 3.01
1966 1978 4.708868 TCAAAAACTGATCGTGAACTCG 57.291 40.909 0.00 0.00 0.00 4.18
1967 1979 3.493129 TCAAAAACTGATCGTGAACTCGG 59.507 43.478 0.00 0.00 0.00 4.63
1968 1980 3.380479 AAAACTGATCGTGAACTCGGA 57.620 42.857 0.00 0.00 0.00 4.55
1969 1981 3.380479 AAACTGATCGTGAACTCGGAA 57.620 42.857 0.00 0.00 0.00 4.30
1970 1982 3.380479 AACTGATCGTGAACTCGGAAA 57.620 42.857 0.00 0.00 0.00 3.13
1971 1983 3.380479 ACTGATCGTGAACTCGGAAAA 57.620 42.857 0.00 0.00 0.00 2.29
1972 1984 3.724374 ACTGATCGTGAACTCGGAAAAA 58.276 40.909 0.00 0.00 0.00 1.94
1995 2007 9.541143 AAAAATGTTCGTGGTTATGAATTTCTT 57.459 25.926 0.00 0.00 34.54 2.52
1996 2008 9.541143 AAAATGTTCGTGGTTATGAATTTCTTT 57.459 25.926 0.00 0.00 34.54 2.52
1997 2009 9.541143 AAATGTTCGTGGTTATGAATTTCTTTT 57.459 25.926 0.00 0.00 34.54 2.27
1998 2010 9.541143 AATGTTCGTGGTTATGAATTTCTTTTT 57.459 25.926 0.00 0.00 34.54 1.94
1999 2011 8.346476 TGTTCGTGGTTATGAATTTCTTTTTG 57.654 30.769 0.00 0.00 34.54 2.44
2000 2012 7.976734 TGTTCGTGGTTATGAATTTCTTTTTGT 59.023 29.630 0.00 0.00 34.54 2.83
2001 2013 8.813282 GTTCGTGGTTATGAATTTCTTTTTGTT 58.187 29.630 0.00 0.00 34.54 2.83
2002 2014 8.568732 TCGTGGTTATGAATTTCTTTTTGTTC 57.431 30.769 0.00 0.00 0.00 3.18
2003 2015 7.650104 TCGTGGTTATGAATTTCTTTTTGTTCC 59.350 33.333 0.00 0.00 0.00 3.62
2004 2016 7.651704 CGTGGTTATGAATTTCTTTTTGTTCCT 59.348 33.333 0.00 0.00 0.00 3.36
2005 2017 9.325198 GTGGTTATGAATTTCTTTTTGTTCCTT 57.675 29.630 0.00 0.00 0.00 3.36
2006 2018 9.898152 TGGTTATGAATTTCTTTTTGTTCCTTT 57.102 25.926 0.00 0.00 0.00 3.11
2173 2185 9.567776 TCATGGTTATGAAAAACTGTTAGAGAA 57.432 29.630 0.00 0.00 40.26 2.87
2207 2219 7.614674 TGTTTGTGTTTTGAAAAATGTTTGC 57.385 28.000 0.00 0.00 0.00 3.68
2208 2220 7.195646 TGTTTGTGTTTTGAAAAATGTTTGCA 58.804 26.923 0.00 0.00 0.00 4.08
2209 2221 7.864379 TGTTTGTGTTTTGAAAAATGTTTGCAT 59.136 25.926 0.00 0.00 36.80 3.96
2210 2222 8.697960 GTTTGTGTTTTGAAAAATGTTTGCATT 58.302 25.926 0.00 0.00 46.38 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 194 3.455910 TCAATATGGTCTTGGACTGGGAG 59.544 47.826 0.00 0.00 32.47 4.30
494 498 4.019501 CCCCATCCTCATCCAATCTAAGAG 60.020 50.000 0.00 0.00 0.00 2.85
1187 1196 2.163412 GCCACCAAATTACATGCTCGAA 59.837 45.455 0.00 0.00 0.00 3.71
1315 1326 5.474532 TGCATTCCTCTTACATATCATTGCC 59.525 40.000 0.00 0.00 0.00 4.52
1360 1372 0.761802 CCATGTAGGAGCTCCCCTTC 59.238 60.000 29.54 16.60 41.22 3.46
1363 1375 2.832498 GCCATGTAGGAGCTCCCC 59.168 66.667 29.54 20.08 41.22 4.81
1364 1376 2.423446 CGCCATGTAGGAGCTCCC 59.577 66.667 29.54 15.52 41.22 4.30
1365 1377 2.423446 CCGCCATGTAGGAGCTCC 59.577 66.667 26.22 26.22 41.22 4.70
1366 1378 2.134287 TCCCGCCATGTAGGAGCTC 61.134 63.158 4.71 4.71 41.22 4.09
1367 1379 2.041922 TCCCGCCATGTAGGAGCT 60.042 61.111 5.37 0.00 41.22 4.09
1368 1380 2.109181 GTCCCGCCATGTAGGAGC 59.891 66.667 5.37 0.00 41.22 4.70
1369 1381 1.742768 GAGTCCCGCCATGTAGGAG 59.257 63.158 5.37 0.00 41.22 3.69
1370 1382 1.760875 GGAGTCCCGCCATGTAGGA 60.761 63.158 0.00 0.00 41.22 2.94
1371 1383 2.808206 GGGAGTCCCGCCATGTAGG 61.808 68.421 13.89 0.00 35.20 3.18
1372 1384 2.822399 GGGAGTCCCGCCATGTAG 59.178 66.667 13.89 0.00 32.13 2.74
1384 1396 2.336478 CGAGCGTCAGACAGGGAGT 61.336 63.158 0.41 0.00 0.00 3.85
1385 1397 1.867919 AACGAGCGTCAGACAGGGAG 61.868 60.000 0.41 0.00 0.00 4.30
1386 1398 0.607217 TAACGAGCGTCAGACAGGGA 60.607 55.000 0.41 0.00 0.00 4.20
1387 1399 0.179161 CTAACGAGCGTCAGACAGGG 60.179 60.000 0.41 0.00 0.00 4.45
1388 1400 0.798771 GCTAACGAGCGTCAGACAGG 60.799 60.000 0.41 0.00 39.39 4.00
1389 1401 2.643044 GCTAACGAGCGTCAGACAG 58.357 57.895 0.41 0.00 39.39 3.51
1390 1402 4.861883 GCTAACGAGCGTCAGACA 57.138 55.556 0.41 0.00 39.39 3.41
1402 1414 1.398071 GCACCTTCGTTTGACGCTAAC 60.398 52.381 0.00 0.00 42.21 2.34
1403 1415 0.863144 GCACCTTCGTTTGACGCTAA 59.137 50.000 0.00 0.00 42.21 3.09
1404 1416 1.279527 CGCACCTTCGTTTGACGCTA 61.280 55.000 0.00 0.00 42.21 4.26
1405 1417 2.594962 CGCACCTTCGTTTGACGCT 61.595 57.895 0.00 0.00 42.21 5.07
1406 1418 2.127758 CGCACCTTCGTTTGACGC 60.128 61.111 0.00 0.00 42.21 5.19
1407 1419 2.127758 GCGCACCTTCGTTTGACG 60.128 61.111 0.30 0.00 44.19 4.35
1408 1420 1.204312 GAGCGCACCTTCGTTTGAC 59.796 57.895 11.47 0.00 0.00 3.18
1409 1421 2.307309 CGAGCGCACCTTCGTTTGA 61.307 57.895 11.47 0.00 0.00 2.69
1410 1422 2.170985 CGAGCGCACCTTCGTTTG 59.829 61.111 11.47 0.00 0.00 2.93
1411 1423 3.712881 GCGAGCGCACCTTCGTTT 61.713 61.111 11.47 0.00 41.49 3.60
1412 1424 4.664677 AGCGAGCGCACCTTCGTT 62.665 61.111 17.68 5.04 44.88 3.85
1415 1427 2.734673 CTTCAGCGAGCGCACCTTC 61.735 63.158 17.68 0.00 44.88 3.46
1416 1428 2.740055 CTTCAGCGAGCGCACCTT 60.740 61.111 17.68 0.00 44.88 3.50
1417 1429 4.749310 CCTTCAGCGAGCGCACCT 62.749 66.667 17.68 0.00 44.88 4.00
1418 1430 3.642778 TACCTTCAGCGAGCGCACC 62.643 63.158 17.68 0.00 44.88 5.01
1419 1431 2.126071 TACCTTCAGCGAGCGCAC 60.126 61.111 17.68 0.96 44.88 5.34
1420 1432 1.667154 ATCTACCTTCAGCGAGCGCA 61.667 55.000 17.68 0.00 44.88 6.09
1421 1433 0.311165 TATCTACCTTCAGCGAGCGC 59.689 55.000 6.78 6.78 42.33 5.92
1422 1434 1.333931 TGTATCTACCTTCAGCGAGCG 59.666 52.381 0.00 0.00 0.00 5.03
1423 1435 2.099263 TGTGTATCTACCTTCAGCGAGC 59.901 50.000 0.00 0.00 0.00 5.03
1424 1436 4.294232 CATGTGTATCTACCTTCAGCGAG 58.706 47.826 0.00 0.00 0.00 5.03
1425 1437 3.068165 CCATGTGTATCTACCTTCAGCGA 59.932 47.826 0.00 0.00 0.00 4.93
1426 1438 3.384668 CCATGTGTATCTACCTTCAGCG 58.615 50.000 0.00 0.00 0.00 5.18
1427 1439 3.733337 CCCATGTGTATCTACCTTCAGC 58.267 50.000 0.00 0.00 0.00 4.26
1428 1440 3.495100 GGCCCATGTGTATCTACCTTCAG 60.495 52.174 0.00 0.00 0.00 3.02
1429 1441 2.438021 GGCCCATGTGTATCTACCTTCA 59.562 50.000 0.00 0.00 0.00 3.02
1430 1442 2.548067 CGGCCCATGTGTATCTACCTTC 60.548 54.545 0.00 0.00 0.00 3.46
1431 1443 1.416401 CGGCCCATGTGTATCTACCTT 59.584 52.381 0.00 0.00 0.00 3.50
1432 1444 1.048601 CGGCCCATGTGTATCTACCT 58.951 55.000 0.00 0.00 0.00 3.08
1433 1445 0.034896 CCGGCCCATGTGTATCTACC 59.965 60.000 0.00 0.00 0.00 3.18
1434 1446 0.602905 GCCGGCCCATGTGTATCTAC 60.603 60.000 18.11 0.00 0.00 2.59
1435 1447 1.752198 GCCGGCCCATGTGTATCTA 59.248 57.895 18.11 0.00 0.00 1.98
1436 1448 2.510906 GCCGGCCCATGTGTATCT 59.489 61.111 18.11 0.00 0.00 1.98
1437 1449 2.594592 GGCCGGCCCATGTGTATC 60.595 66.667 36.64 5.01 0.00 2.24
1448 1460 4.759205 ACCTCCAAATGGGCCGGC 62.759 66.667 21.18 21.18 36.21 6.13
1449 1461 2.440247 GACCTCCAAATGGGCCGG 60.440 66.667 0.00 0.00 36.21 6.13
1450 1462 1.750399 CTGACCTCCAAATGGGCCG 60.750 63.158 0.00 0.00 36.21 6.13
1451 1463 1.380380 CCTGACCTCCAAATGGGCC 60.380 63.158 0.00 0.00 36.21 5.80
1452 1464 0.039618 TTCCTGACCTCCAAATGGGC 59.960 55.000 0.00 0.00 36.21 5.36
1453 1465 1.355720 AGTTCCTGACCTCCAAATGGG 59.644 52.381 0.00 0.00 35.41 4.00
1454 1466 2.619074 GGAGTTCCTGACCTCCAAATGG 60.619 54.545 5.92 0.00 36.11 3.16
1455 1467 2.040278 TGGAGTTCCTGACCTCCAAATG 59.960 50.000 10.64 0.00 42.32 2.32
1456 1468 2.307098 CTGGAGTTCCTGACCTCCAAAT 59.693 50.000 13.56 0.00 44.27 2.32
1457 1469 1.699634 CTGGAGTTCCTGACCTCCAAA 59.300 52.381 13.56 0.00 44.27 3.28
1458 1470 1.352083 CTGGAGTTCCTGACCTCCAA 58.648 55.000 13.56 0.32 44.27 3.53
1459 1471 1.194781 GCTGGAGTTCCTGACCTCCA 61.195 60.000 12.24 12.24 42.95 3.86
1460 1472 1.599576 GCTGGAGTTCCTGACCTCC 59.400 63.158 9.01 3.93 37.15 4.30
1461 1473 1.216710 CGCTGGAGTTCCTGACCTC 59.783 63.158 9.01 0.00 37.15 3.85
1462 1474 2.948720 GCGCTGGAGTTCCTGACCT 61.949 63.158 0.00 0.00 37.15 3.85
1463 1475 2.435059 GCGCTGGAGTTCCTGACC 60.435 66.667 0.00 0.00 37.15 4.02
1464 1476 2.209064 TACGCGCTGGAGTTCCTGAC 62.209 60.000 5.73 0.13 37.15 3.51
1465 1477 1.529152 TTACGCGCTGGAGTTCCTGA 61.529 55.000 5.73 0.00 37.15 3.86
1466 1478 0.669318 TTTACGCGCTGGAGTTCCTG 60.669 55.000 5.73 0.13 37.93 3.86
1467 1479 0.034337 TTTTACGCGCTGGAGTTCCT 59.966 50.000 5.73 0.00 36.82 3.36
1468 1480 1.084289 ATTTTACGCGCTGGAGTTCC 58.916 50.000 5.73 0.00 0.00 3.62
1469 1481 3.361724 CGATATTTTACGCGCTGGAGTTC 60.362 47.826 5.73 0.00 0.00 3.01
1470 1482 2.538449 CGATATTTTACGCGCTGGAGTT 59.462 45.455 5.73 0.00 0.00 3.01
1471 1483 2.124903 CGATATTTTACGCGCTGGAGT 58.875 47.619 5.73 0.00 0.00 3.85
1472 1484 1.136611 GCGATATTTTACGCGCTGGAG 60.137 52.381 5.73 0.00 45.41 3.86
1473 1485 0.856641 GCGATATTTTACGCGCTGGA 59.143 50.000 5.73 0.00 45.41 3.86
1474 1486 3.345087 GCGATATTTTACGCGCTGG 57.655 52.632 5.73 0.00 45.41 4.85
1483 1495 9.150348 CACCTCTTTTATTTTTGGCGATATTTT 57.850 29.630 0.00 0.00 0.00 1.82
1484 1496 7.763985 CCACCTCTTTTATTTTTGGCGATATTT 59.236 33.333 0.00 0.00 0.00 1.40
1485 1497 7.264947 CCACCTCTTTTATTTTTGGCGATATT 58.735 34.615 0.00 0.00 0.00 1.28
1486 1498 6.682861 GCCACCTCTTTTATTTTTGGCGATAT 60.683 38.462 0.00 0.00 38.79 1.63
1487 1499 5.393678 GCCACCTCTTTTATTTTTGGCGATA 60.394 40.000 0.00 0.00 38.79 2.92
1488 1500 4.620567 GCCACCTCTTTTATTTTTGGCGAT 60.621 41.667 0.00 0.00 38.79 4.58
1489 1501 3.305744 GCCACCTCTTTTATTTTTGGCGA 60.306 43.478 0.00 0.00 38.79 5.54
1490 1502 2.993220 GCCACCTCTTTTATTTTTGGCG 59.007 45.455 0.00 0.00 38.79 5.69
1491 1503 3.244387 TGGCCACCTCTTTTATTTTTGGC 60.244 43.478 0.00 0.92 46.05 4.52
1492 1504 4.283212 TCTGGCCACCTCTTTTATTTTTGG 59.717 41.667 0.00 0.00 0.00 3.28
1493 1505 5.467035 TCTGGCCACCTCTTTTATTTTTG 57.533 39.130 0.00 0.00 0.00 2.44
1494 1506 7.201821 CGATATCTGGCCACCTCTTTTATTTTT 60.202 37.037 0.00 0.00 0.00 1.94
1495 1507 6.263168 CGATATCTGGCCACCTCTTTTATTTT 59.737 38.462 0.00 0.00 0.00 1.82
1496 1508 5.765182 CGATATCTGGCCACCTCTTTTATTT 59.235 40.000 0.00 0.00 0.00 1.40
1497 1509 5.071788 TCGATATCTGGCCACCTCTTTTATT 59.928 40.000 0.00 0.00 0.00 1.40
1498 1510 4.593206 TCGATATCTGGCCACCTCTTTTAT 59.407 41.667 0.00 0.00 0.00 1.40
1499 1511 3.964688 TCGATATCTGGCCACCTCTTTTA 59.035 43.478 0.00 0.00 0.00 1.52
1500 1512 2.771943 TCGATATCTGGCCACCTCTTTT 59.228 45.455 0.00 0.00 0.00 2.27
1501 1513 2.398588 TCGATATCTGGCCACCTCTTT 58.601 47.619 0.00 0.00 0.00 2.52
1502 1514 2.088104 TCGATATCTGGCCACCTCTT 57.912 50.000 0.00 0.00 0.00 2.85
1503 1515 1.689273 GTTCGATATCTGGCCACCTCT 59.311 52.381 0.00 0.00 0.00 3.69
1504 1516 1.689273 AGTTCGATATCTGGCCACCTC 59.311 52.381 0.00 0.00 0.00 3.85
1505 1517 1.689273 GAGTTCGATATCTGGCCACCT 59.311 52.381 0.00 0.00 0.00 4.00
1506 1518 1.412710 TGAGTTCGATATCTGGCCACC 59.587 52.381 0.00 0.00 0.00 4.61
1507 1519 2.890808 TGAGTTCGATATCTGGCCAC 57.109 50.000 0.00 0.00 0.00 5.01
1508 1520 2.965147 TCATGAGTTCGATATCTGGCCA 59.035 45.455 4.71 4.71 0.00 5.36
1509 1521 3.321497 GTCATGAGTTCGATATCTGGCC 58.679 50.000 0.00 0.00 0.00 5.36
1510 1522 2.983136 CGTCATGAGTTCGATATCTGGC 59.017 50.000 0.00 0.00 0.00 4.85
1511 1523 3.977579 CACGTCATGAGTTCGATATCTGG 59.022 47.826 10.77 0.00 0.00 3.86
1512 1524 3.423536 GCACGTCATGAGTTCGATATCTG 59.576 47.826 10.77 0.48 0.00 2.90
1513 1525 3.551046 GGCACGTCATGAGTTCGATATCT 60.551 47.826 10.77 0.00 0.00 1.98
1514 1526 2.726760 GGCACGTCATGAGTTCGATATC 59.273 50.000 10.77 0.00 0.00 1.63
1515 1527 2.743938 GGCACGTCATGAGTTCGATAT 58.256 47.619 10.77 0.00 0.00 1.63
1516 1528 2.203800 GGCACGTCATGAGTTCGATA 57.796 50.000 10.77 0.00 0.00 2.92
1517 1529 3.050703 GGCACGTCATGAGTTCGAT 57.949 52.632 10.77 0.00 0.00 3.59
1518 1530 4.571250 GGCACGTCATGAGTTCGA 57.429 55.556 10.77 0.00 0.00 3.71
1531 1543 1.068748 TCTAGACTTCACGAACGGCAC 60.069 52.381 0.00 0.00 0.00 5.01
1532 1544 1.241165 TCTAGACTTCACGAACGGCA 58.759 50.000 0.00 0.00 0.00 5.69
1533 1545 1.984297 GTTCTAGACTTCACGAACGGC 59.016 52.381 0.00 0.00 0.00 5.68
1534 1546 2.228343 AGGTTCTAGACTTCACGAACGG 59.772 50.000 0.00 0.00 37.28 4.44
1535 1547 3.555917 AGGTTCTAGACTTCACGAACG 57.444 47.619 0.00 0.00 37.28 3.95
1536 1548 4.217118 TGGTAGGTTCTAGACTTCACGAAC 59.783 45.833 0.00 0.00 36.06 3.95
1537 1549 4.401022 TGGTAGGTTCTAGACTTCACGAA 58.599 43.478 0.00 0.00 0.00 3.85
1538 1550 4.025040 TGGTAGGTTCTAGACTTCACGA 57.975 45.455 0.00 0.00 0.00 4.35
1539 1551 4.778534 TTGGTAGGTTCTAGACTTCACG 57.221 45.455 0.00 0.00 0.00 4.35
1540 1552 5.341617 CGATTGGTAGGTTCTAGACTTCAC 58.658 45.833 0.00 0.00 0.00 3.18
1541 1553 4.401519 CCGATTGGTAGGTTCTAGACTTCA 59.598 45.833 0.00 0.00 0.00 3.02
1542 1554 4.202131 CCCGATTGGTAGGTTCTAGACTTC 60.202 50.000 0.00 0.00 0.00 3.01
1543 1555 3.705072 CCCGATTGGTAGGTTCTAGACTT 59.295 47.826 0.00 0.00 0.00 3.01
1544 1556 3.297736 CCCGATTGGTAGGTTCTAGACT 58.702 50.000 0.00 0.00 0.00 3.24
1545 1557 2.223994 GCCCGATTGGTAGGTTCTAGAC 60.224 54.545 0.00 0.00 36.04 2.59
1546 1558 2.037144 GCCCGATTGGTAGGTTCTAGA 58.963 52.381 0.00 0.00 36.04 2.43
1547 1559 2.040178 AGCCCGATTGGTAGGTTCTAG 58.960 52.381 0.00 0.00 36.04 2.43
1548 1560 1.760613 CAGCCCGATTGGTAGGTTCTA 59.239 52.381 0.00 0.00 36.04 2.10
1549 1561 0.541863 CAGCCCGATTGGTAGGTTCT 59.458 55.000 0.00 0.00 36.04 3.01
1550 1562 0.539986 TCAGCCCGATTGGTAGGTTC 59.460 55.000 0.00 0.00 36.04 3.62
1551 1563 0.988832 TTCAGCCCGATTGGTAGGTT 59.011 50.000 0.00 0.00 36.04 3.50
1552 1564 0.988832 TTTCAGCCCGATTGGTAGGT 59.011 50.000 0.00 0.00 36.04 3.08
1553 1565 1.379527 GTTTCAGCCCGATTGGTAGG 58.620 55.000 0.00 0.00 36.04 3.18
1554 1566 1.006832 CGTTTCAGCCCGATTGGTAG 58.993 55.000 0.00 0.00 36.04 3.18
1555 1567 0.322322 ACGTTTCAGCCCGATTGGTA 59.678 50.000 0.00 0.00 36.04 3.25
1556 1568 0.536460 AACGTTTCAGCCCGATTGGT 60.536 50.000 0.00 0.00 36.04 3.67
1557 1569 0.596082 AAACGTTTCAGCCCGATTGG 59.404 50.000 7.96 0.00 37.09 3.16
1558 1570 2.415697 AAAACGTTTCAGCCCGATTG 57.584 45.000 15.01 0.00 0.00 2.67
1559 1571 2.096119 CGTAAAACGTTTCAGCCCGATT 60.096 45.455 15.01 0.00 36.74 3.34
1560 1572 1.461897 CGTAAAACGTTTCAGCCCGAT 59.538 47.619 15.01 0.00 36.74 4.18
1561 1573 0.860533 CGTAAAACGTTTCAGCCCGA 59.139 50.000 15.01 0.00 36.74 5.14
1562 1574 3.354875 CGTAAAACGTTTCAGCCCG 57.645 52.632 15.01 8.43 36.74 6.13
1573 1585 2.908626 GCTGCATACAAGCACGTAAAAC 59.091 45.455 0.00 0.00 40.11 2.43
1574 1586 2.412195 CGCTGCATACAAGCACGTAAAA 60.412 45.455 0.00 0.00 40.11 1.52
1575 1587 1.127766 CGCTGCATACAAGCACGTAAA 59.872 47.619 0.00 0.00 40.11 2.01
1576 1588 0.718904 CGCTGCATACAAGCACGTAA 59.281 50.000 0.00 0.00 40.11 3.18
1577 1589 1.692148 GCGCTGCATACAAGCACGTA 61.692 55.000 0.00 0.00 40.11 3.57
1578 1590 3.027170 GCGCTGCATACAAGCACGT 62.027 57.895 0.00 0.00 40.11 4.49
1579 1591 2.276868 GCGCTGCATACAAGCACG 60.277 61.111 0.00 0.00 40.11 5.34
1580 1592 2.276868 CGCGCTGCATACAAGCAC 60.277 61.111 5.56 0.00 40.11 4.40
1581 1593 2.434011 TCGCGCTGCATACAAGCA 60.434 55.556 5.56 0.00 43.35 3.91
1582 1594 2.322422 CTCGCGCTGCATACAAGC 59.678 61.111 5.56 0.00 0.00 4.01
1583 1595 2.169789 AGCTCGCGCTGCATACAAG 61.170 57.895 21.88 4.23 46.86 3.16
1584 1596 2.125552 AGCTCGCGCTGCATACAA 60.126 55.556 21.88 0.00 46.86 2.41
1593 1605 1.201098 CGGTACTTTAGAGCTCGCGC 61.201 60.000 8.37 0.00 0.00 6.86
1594 1606 0.376152 TCGGTACTTTAGAGCTCGCG 59.624 55.000 8.37 0.00 0.00 5.87
1595 1607 2.183636 GTTCGGTACTTTAGAGCTCGC 58.816 52.381 8.37 0.00 0.00 5.03
1596 1608 3.482722 TGTTCGGTACTTTAGAGCTCG 57.517 47.619 8.37 0.00 0.00 5.03
1597 1609 8.421673 AAAATATGTTCGGTACTTTAGAGCTC 57.578 34.615 5.27 5.27 0.00 4.09
1598 1610 8.038944 TGAAAATATGTTCGGTACTTTAGAGCT 58.961 33.333 1.17 0.00 0.00 4.09
1599 1611 8.193250 TGAAAATATGTTCGGTACTTTAGAGC 57.807 34.615 1.17 0.00 0.00 4.09
1627 1639 9.766277 CCTGATTTTTGAAAATTGTTCGAAAAA 57.234 25.926 15.53 2.60 42.02 1.94
1628 1640 9.155975 TCCTGATTTTTGAAAATTGTTCGAAAA 57.844 25.926 14.39 14.39 42.56 2.29
1629 1641 8.709386 TCCTGATTTTTGAAAATTGTTCGAAA 57.291 26.923 0.00 0.00 38.64 3.46
1630 1642 8.599774 GTTCCTGATTTTTGAAAATTGTTCGAA 58.400 29.630 0.00 0.00 38.64 3.71
1631 1643 7.761704 TGTTCCTGATTTTTGAAAATTGTTCGA 59.238 29.630 3.45 0.00 38.64 3.71
1632 1644 7.904094 TGTTCCTGATTTTTGAAAATTGTTCG 58.096 30.769 3.45 0.00 38.64 3.95
1667 1679 9.980780 CGTTTGTAAAATTTTGTCCAGAATTTT 57.019 25.926 19.03 19.03 43.22 1.82
1668 1680 9.157104 ACGTTTGTAAAATTTTGTCCAGAATTT 57.843 25.926 13.76 3.45 36.89 1.82
1669 1681 8.599774 CACGTTTGTAAAATTTTGTCCAGAATT 58.400 29.630 13.76 0.00 0.00 2.17
1670 1682 7.976734 TCACGTTTGTAAAATTTTGTCCAGAAT 59.023 29.630 13.76 0.00 0.00 2.40
1671 1683 7.313646 TCACGTTTGTAAAATTTTGTCCAGAA 58.686 30.769 13.76 0.00 0.00 3.02
1672 1684 6.853720 TCACGTTTGTAAAATTTTGTCCAGA 58.146 32.000 13.76 0.80 0.00 3.86
1673 1685 7.062371 TGTTCACGTTTGTAAAATTTTGTCCAG 59.938 33.333 13.76 3.65 0.00 3.86
1674 1686 6.866770 TGTTCACGTTTGTAAAATTTTGTCCA 59.133 30.769 13.76 4.89 0.00 4.02
1675 1687 7.062488 AGTGTTCACGTTTGTAAAATTTTGTCC 59.938 33.333 13.76 2.39 0.00 4.02
1676 1688 7.944997 AGTGTTCACGTTTGTAAAATTTTGTC 58.055 30.769 13.76 7.24 0.00 3.18
1677 1689 7.876896 AGTGTTCACGTTTGTAAAATTTTGT 57.123 28.000 13.76 0.00 0.00 2.83
1685 1697 9.500864 GGTTTTAAATAGTGTTCACGTTTGTAA 57.499 29.630 14.52 9.02 0.00 2.41
1686 1698 8.671921 TGGTTTTAAATAGTGTTCACGTTTGTA 58.328 29.630 14.52 5.36 0.00 2.41
1687 1699 7.536855 TGGTTTTAAATAGTGTTCACGTTTGT 58.463 30.769 14.52 0.00 0.00 2.83
1688 1700 7.972623 TGGTTTTAAATAGTGTTCACGTTTG 57.027 32.000 14.52 0.00 0.00 2.93
1689 1701 8.407064 TCATGGTTTTAAATAGTGTTCACGTTT 58.593 29.630 0.00 11.56 0.00 3.60
1690 1702 7.932335 TCATGGTTTTAAATAGTGTTCACGTT 58.068 30.769 0.00 0.00 0.00 3.99
1691 1703 7.499321 TCATGGTTTTAAATAGTGTTCACGT 57.501 32.000 0.00 0.00 0.00 4.49
1692 1704 7.858382 TGTTCATGGTTTTAAATAGTGTTCACG 59.142 33.333 0.00 0.00 0.00 4.35
1693 1705 9.691362 ATGTTCATGGTTTTAAATAGTGTTCAC 57.309 29.630 0.00 0.00 0.00 3.18
1729 1741 9.245962 TCTTCACGTTTTAAAAGTTTGTTCAAA 57.754 25.926 0.00 0.00 0.00 2.69
1730 1742 8.798748 TCTTCACGTTTTAAAAGTTTGTTCAA 57.201 26.923 0.00 0.00 0.00 2.69
1731 1743 7.539366 CCTCTTCACGTTTTAAAAGTTTGTTCA 59.461 33.333 0.00 0.00 0.00 3.18
1732 1744 7.751793 TCCTCTTCACGTTTTAAAAGTTTGTTC 59.248 33.333 0.00 0.00 0.00 3.18
1733 1745 7.595604 TCCTCTTCACGTTTTAAAAGTTTGTT 58.404 30.769 0.00 0.00 0.00 2.83
1734 1746 7.148355 TCCTCTTCACGTTTTAAAAGTTTGT 57.852 32.000 0.00 0.00 0.00 2.83
1735 1747 7.378728 GGATCCTCTTCACGTTTTAAAAGTTTG 59.621 37.037 3.84 0.00 0.00 2.93
1736 1748 7.067737 TGGATCCTCTTCACGTTTTAAAAGTTT 59.932 33.333 14.23 0.00 0.00 2.66
1737 1749 6.544564 TGGATCCTCTTCACGTTTTAAAAGTT 59.455 34.615 14.23 0.00 0.00 2.66
1738 1750 6.017357 GTGGATCCTCTTCACGTTTTAAAAGT 60.017 38.462 14.23 0.00 0.00 2.66
1739 1751 6.371389 GTGGATCCTCTTCACGTTTTAAAAG 58.629 40.000 14.23 0.00 0.00 2.27
1740 1752 5.239963 GGTGGATCCTCTTCACGTTTTAAAA 59.760 40.000 14.23 0.00 32.65 1.52
1741 1753 4.758165 GGTGGATCCTCTTCACGTTTTAAA 59.242 41.667 14.23 0.00 32.65 1.52
1742 1754 4.320870 GGTGGATCCTCTTCACGTTTTAA 58.679 43.478 14.23 0.00 32.65 1.52
1743 1755 3.307199 GGGTGGATCCTCTTCACGTTTTA 60.307 47.826 14.23 0.00 36.25 1.52
1744 1756 2.552373 GGGTGGATCCTCTTCACGTTTT 60.552 50.000 14.23 0.00 36.25 2.43
1745 1757 1.003233 GGGTGGATCCTCTTCACGTTT 59.997 52.381 14.23 0.00 36.25 3.60
1746 1758 0.613777 GGGTGGATCCTCTTCACGTT 59.386 55.000 14.23 0.00 36.25 3.99
1747 1759 0.252284 AGGGTGGATCCTCTTCACGT 60.252 55.000 14.23 0.00 36.25 4.49
1748 1760 1.409427 GTAGGGTGGATCCTCTTCACG 59.591 57.143 14.23 0.00 38.30 4.35
1749 1761 2.467880 TGTAGGGTGGATCCTCTTCAC 58.532 52.381 14.23 8.87 38.30 3.18
1750 1762 2.940514 TGTAGGGTGGATCCTCTTCA 57.059 50.000 14.23 9.04 38.30 3.02
1751 1763 2.370189 CCATGTAGGGTGGATCCTCTTC 59.630 54.545 14.23 6.47 39.12 2.87
1752 1764 2.412591 CCATGTAGGGTGGATCCTCTT 58.587 52.381 14.23 4.49 39.12 2.85
1753 1765 2.042301 GCCATGTAGGGTGGATCCTCT 61.042 57.143 14.23 10.31 39.12 3.69
1754 1766 0.398318 GCCATGTAGGGTGGATCCTC 59.602 60.000 14.23 9.56 39.12 3.71
1755 1767 1.410850 CGCCATGTAGGGTGGATCCT 61.411 60.000 14.23 0.00 39.12 3.24
1756 1768 1.071471 CGCCATGTAGGGTGGATCC 59.929 63.158 4.20 4.20 39.12 3.36
1757 1769 1.598130 GCGCCATGTAGGGTGGATC 60.598 63.158 0.00 0.00 39.12 3.36
1758 1770 1.635817 AAGCGCCATGTAGGGTGGAT 61.636 55.000 2.29 0.00 39.12 3.41
1759 1771 2.252072 GAAGCGCCATGTAGGGTGGA 62.252 60.000 2.29 0.00 39.12 4.02
1760 1772 1.819632 GAAGCGCCATGTAGGGTGG 60.820 63.158 2.29 0.00 38.89 4.61
1761 1773 1.819632 GGAAGCGCCATGTAGGGTG 60.820 63.158 2.29 0.00 41.45 4.61
1762 1774 1.972660 GAGGAAGCGCCATGTAGGGT 61.973 60.000 2.29 0.00 40.02 4.34
1763 1775 1.227674 GAGGAAGCGCCATGTAGGG 60.228 63.158 2.29 0.00 40.02 3.53
1764 1776 0.179000 AAGAGGAAGCGCCATGTAGG 59.821 55.000 2.29 0.00 40.02 3.18
1765 1777 1.293924 CAAGAGGAAGCGCCATGTAG 58.706 55.000 2.29 0.00 40.02 2.74
1766 1778 0.107703 CCAAGAGGAAGCGCCATGTA 60.108 55.000 2.29 0.00 40.02 2.29
1767 1779 1.377725 CCAAGAGGAAGCGCCATGT 60.378 57.895 2.29 0.00 40.02 3.21
1768 1780 2.768492 GCCAAGAGGAAGCGCCATG 61.768 63.158 2.29 0.00 40.02 3.66
1769 1781 2.439156 GCCAAGAGGAAGCGCCAT 60.439 61.111 2.29 0.00 40.02 4.40
1770 1782 4.722700 GGCCAAGAGGAAGCGCCA 62.723 66.667 2.29 0.00 39.50 5.69
1771 1783 4.416738 AGGCCAAGAGGAAGCGCC 62.417 66.667 5.01 0.00 40.03 6.53
1772 1784 3.130160 CAGGCCAAGAGGAAGCGC 61.130 66.667 5.01 0.00 36.89 5.92
1773 1785 3.130160 GCAGGCCAAGAGGAAGCG 61.130 66.667 5.01 0.00 36.89 4.68
1774 1786 2.753446 GGCAGGCCAAGAGGAAGC 60.753 66.667 5.01 0.00 36.89 3.86
1775 1787 2.044551 GGGCAGGCCAAGAGGAAG 60.045 66.667 13.10 0.00 37.98 3.46
1776 1788 3.661648 GGGGCAGGCCAAGAGGAA 61.662 66.667 16.36 0.00 37.98 3.36
1778 1790 3.747579 ATGGGGCAGGCCAAGAGG 61.748 66.667 16.36 0.00 37.98 3.69
1779 1791 2.441532 CATGGGGCAGGCCAAGAG 60.442 66.667 16.36 0.00 37.98 2.85
1780 1792 4.764771 GCATGGGGCAGGCCAAGA 62.765 66.667 16.36 0.00 43.97 3.02
1805 1817 0.182775 AAGAAAACAGGTGGCGTCCT 59.817 50.000 0.00 0.00 38.51 3.85
1806 1818 1.029681 AAAGAAAACAGGTGGCGTCC 58.970 50.000 0.00 0.00 0.00 4.79
1807 1819 2.863401 AAAAGAAAACAGGTGGCGTC 57.137 45.000 0.00 0.00 0.00 5.19
1933 1945 9.364989 ACGATCAGTTTTTGATTTCTTGAAAAA 57.635 25.926 0.00 0.00 46.51 1.94
1934 1946 8.806634 CACGATCAGTTTTTGATTTCTTGAAAA 58.193 29.630 0.00 0.00 46.51 2.29
1935 1947 8.187480 TCACGATCAGTTTTTGATTTCTTGAAA 58.813 29.630 0.00 0.00 46.51 2.69
1936 1948 7.702386 TCACGATCAGTTTTTGATTTCTTGAA 58.298 30.769 0.00 0.00 46.51 2.69
1937 1949 7.258022 TCACGATCAGTTTTTGATTTCTTGA 57.742 32.000 0.00 0.00 46.51 3.02
1938 1950 7.645340 AGTTCACGATCAGTTTTTGATTTCTTG 59.355 33.333 0.00 0.00 46.51 3.02
1939 1951 7.707104 AGTTCACGATCAGTTTTTGATTTCTT 58.293 30.769 0.00 0.00 46.51 2.52
1940 1952 7.264373 AGTTCACGATCAGTTTTTGATTTCT 57.736 32.000 0.00 0.00 46.51 2.52
1941 1953 6.300902 CGAGTTCACGATCAGTTTTTGATTTC 59.699 38.462 0.00 0.00 46.51 2.17
1942 1954 6.136071 CGAGTTCACGATCAGTTTTTGATTT 58.864 36.000 0.00 0.00 46.51 2.17
1943 1955 5.334105 CCGAGTTCACGATCAGTTTTTGATT 60.334 40.000 0.00 0.00 46.51 2.57
1945 1957 3.493129 CCGAGTTCACGATCAGTTTTTGA 59.507 43.478 0.00 0.00 40.85 2.69
1946 1958 3.493129 TCCGAGTTCACGATCAGTTTTTG 59.507 43.478 0.00 0.00 35.09 2.44
1947 1959 3.724374 TCCGAGTTCACGATCAGTTTTT 58.276 40.909 0.00 0.00 35.09 1.94
1948 1960 3.380479 TCCGAGTTCACGATCAGTTTT 57.620 42.857 0.00 0.00 35.09 2.43
1949 1961 3.380479 TTCCGAGTTCACGATCAGTTT 57.620 42.857 0.00 0.00 35.09 2.66
1950 1962 3.380479 TTTCCGAGTTCACGATCAGTT 57.620 42.857 0.00 0.00 35.09 3.16
1951 1963 3.380479 TTTTCCGAGTTCACGATCAGT 57.620 42.857 0.00 0.00 35.09 3.41
1969 1981 9.541143 AAGAAATTCATAACCACGAACATTTTT 57.459 25.926 0.00 0.00 0.00 1.94
1970 1982 9.541143 AAAGAAATTCATAACCACGAACATTTT 57.459 25.926 0.00 0.00 0.00 1.82
1971 1983 9.541143 AAAAGAAATTCATAACCACGAACATTT 57.459 25.926 0.00 0.00 0.00 2.32
1972 1984 9.541143 AAAAAGAAATTCATAACCACGAACATT 57.459 25.926 0.00 0.00 0.00 2.71
1973 1985 8.977505 CAAAAAGAAATTCATAACCACGAACAT 58.022 29.630 0.00 0.00 0.00 2.71
1974 1986 7.976734 ACAAAAAGAAATTCATAACCACGAACA 59.023 29.630 0.00 0.00 0.00 3.18
1975 1987 8.347729 ACAAAAAGAAATTCATAACCACGAAC 57.652 30.769 0.00 0.00 0.00 3.95
1976 1988 8.934507 AACAAAAAGAAATTCATAACCACGAA 57.065 26.923 0.00 0.00 0.00 3.85
1977 1989 7.650104 GGAACAAAAAGAAATTCATAACCACGA 59.350 33.333 0.00 0.00 0.00 4.35
1978 1990 7.651704 AGGAACAAAAAGAAATTCATAACCACG 59.348 33.333 0.00 0.00 0.00 4.94
1979 1991 8.887036 AGGAACAAAAAGAAATTCATAACCAC 57.113 30.769 0.00 0.00 0.00 4.16
1980 1992 9.898152 AAAGGAACAAAAAGAAATTCATAACCA 57.102 25.926 0.00 0.00 0.00 3.67
2146 2158 9.567776 TCTCTAACAGTTTTTCATAACCATGAA 57.432 29.630 0.00 0.00 46.96 2.57
2147 2159 9.567776 TTCTCTAACAGTTTTTCATAACCATGA 57.432 29.630 0.00 0.00 39.47 3.07
2181 2193 8.697960 GCAAACATTTTTCAAAACACAAACATT 58.302 25.926 0.00 0.00 0.00 2.71
2182 2194 7.864379 TGCAAACATTTTTCAAAACACAAACAT 59.136 25.926 0.00 0.00 0.00 2.71
2183 2195 7.195646 TGCAAACATTTTTCAAAACACAAACA 58.804 26.923 0.00 0.00 0.00 2.83
2184 2196 7.614674 TGCAAACATTTTTCAAAACACAAAC 57.385 28.000 0.00 0.00 0.00 2.93
2185 2197 8.807667 AATGCAAACATTTTTCAAAACACAAA 57.192 23.077 0.00 0.00 44.21 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.