Multiple sequence alignment - TraesCS4B01G093500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G093500 chr4B 100.000 5217 0 0 1 5217 95862811 95857595 0.000000e+00 9635.0
1 TraesCS4B01G093500 chr4B 87.778 90 11 0 2304 2393 65499667 65499756 7.140000e-19 106.0
2 TraesCS4B01G093500 chr4B 94.595 37 1 1 4550 4586 592193327 592193362 7.300000e-04 56.5
3 TraesCS4B01G093500 chr4D 87.755 2254 129 61 1695 3861 65179145 65176952 0.000000e+00 2497.0
4 TraesCS4B01G093500 chr4D 89.744 1716 98 30 1 1689 65180880 65179216 0.000000e+00 2122.0
5 TraesCS4B01G093500 chr4D 89.540 717 51 15 3880 4585 65176836 65176133 0.000000e+00 887.0
6 TraesCS4B01G093500 chr4D 90.556 360 20 8 4612 4967 65176031 65175682 1.020000e-126 464.0
7 TraesCS4B01G093500 chr4A 87.709 1497 96 39 215 1689 530815043 530816473 0.000000e+00 1664.0
8 TraesCS4B01G093500 chr4A 86.923 1430 88 41 2516 3868 530817414 530818821 0.000000e+00 1513.0
9 TraesCS4B01G093500 chr4A 92.298 805 45 8 1692 2481 530816540 530817342 0.000000e+00 1127.0
10 TraesCS4B01G093500 chr4A 88.404 802 53 27 3877 4665 530818922 530819696 0.000000e+00 929.0
11 TraesCS4B01G093500 chr4A 90.338 207 8 8 4825 5023 530819919 530820121 1.440000e-65 261.0
12 TraesCS4B01G093500 chr4A 95.302 149 5 1 1 149 530814868 530815014 8.730000e-58 235.0
13 TraesCS4B01G093500 chr4A 86.364 88 12 0 2304 2391 524285372 524285459 4.300000e-16 97.1
14 TraesCS4B01G093500 chr4A 97.959 49 1 0 4372 4420 530819455 530819503 9.310000e-13 86.1
15 TraesCS4B01G093500 chr4A 81.308 107 19 1 1479 1584 533448997 533449103 9.310000e-13 86.1
16 TraesCS4B01G093500 chr6A 86.154 455 53 5 2793 3237 9585563 9585109 2.830000e-132 483.0
17 TraesCS4B01G093500 chr6A 96.970 33 0 1 4550 4582 116704277 116704308 3.000000e-03 54.7
18 TraesCS4B01G093500 chr7B 84.683 457 58 7 2793 3237 10685286 10685742 3.710000e-121 446.0
19 TraesCS4B01G093500 chr3B 84.267 464 53 9 2794 3237 370958814 370958351 8.020000e-118 435.0
20 TraesCS4B01G093500 chr6B 82.298 322 49 7 2304 2620 471229663 471229981 6.660000e-69 272.0
21 TraesCS4B01G093500 chr6B 80.676 207 35 4 1484 1686 478469973 478470178 6.990000e-34 156.0
22 TraesCS4B01G093500 chr6B 100.000 28 0 0 4553 4580 123633907 123633880 9.000000e-03 52.8
23 TraesCS4B01G093500 chr7D 89.116 147 16 0 2216 2362 50647787 50647933 3.210000e-42 183.0
24 TraesCS4B01G093500 chr7D 90.110 91 8 1 2304 2393 58205116 58205026 3.300000e-22 117.0
25 TraesCS4B01G093500 chr6D 89.116 147 16 0 2216 2362 36216459 36216605 3.210000e-42 183.0
26 TraesCS4B01G093500 chr6D 82.609 207 32 3 1484 1686 310399526 310399732 4.150000e-41 180.0
27 TraesCS4B01G093500 chr6D 96.970 33 0 1 4550 4582 13062687 13062718 3.000000e-03 54.7
28 TraesCS4B01G093500 chr3D 92.437 119 9 0 3119 3237 112758250 112758132 2.500000e-38 171.0
29 TraesCS4B01G093500 chr3D 96.875 32 0 1 4550 4581 501309535 501309565 9.000000e-03 52.8
30 TraesCS4B01G093500 chr5B 92.222 90 7 0 2304 2393 18337548 18337637 1.520000e-25 128.0
31 TraesCS4B01G093500 chr1A 79.562 137 20 4 1559 1687 557424239 557424103 2.000000e-14 91.6
32 TraesCS4B01G093500 chr7A 100.000 30 0 0 4553 4582 167675990 167676019 7.300000e-04 56.5
33 TraesCS4B01G093500 chr2D 96.970 33 0 1 4550 4582 599217144 599217175 3.000000e-03 54.7
34 TraesCS4B01G093500 chr1D 96.970 33 0 1 4550 4582 270220775 270220744 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G093500 chr4B 95857595 95862811 5216 True 9635.000000 9635 100.000000 1 5217 1 chr4B.!!$R1 5216
1 TraesCS4B01G093500 chr4D 65175682 65180880 5198 True 1492.500000 2497 89.398750 1 4967 4 chr4D.!!$R1 4966
2 TraesCS4B01G093500 chr4A 530814868 530820121 5253 False 830.728571 1664 91.276143 1 5023 7 chr4A.!!$F3 5022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.173029 CAGACAGCTGATGAGTCGCT 59.827 55.0 23.35 0.0 45.17 4.93 F
671 704 0.255890 ATTTCCGCTGGCCAGTATGT 59.744 50.0 32.81 12.5 0.00 2.29 F
1174 1218 0.739462 CGGCTTTGATAGTGTGGCGA 60.739 55.0 0.00 0.0 46.95 5.54 F
2481 2612 0.179018 GCAACAGGAACAGGACTGGT 60.179 55.0 4.14 0.0 39.00 4.00 F
3533 3765 0.463833 CTGCGACCCCAAGAATACCC 60.464 60.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 1184 0.106708 AGCCGTCATTATGCCGATGT 59.893 50.000 0.00 0.00 0.00 3.06 R
1843 1957 1.068741 GAGTACCCGAAGCCATAGTGG 59.931 57.143 0.00 0.00 41.55 4.00 R
3074 3306 0.326595 TCACCATCCGGCTTAAGCAA 59.673 50.000 27.83 13.58 44.36 3.91 R
4081 4451 0.176449 CAGCGATGGACCATGTCTGA 59.824 55.000 12.99 0.00 32.47 3.27 R
5181 5787 0.172352 TTTCCGATCGCAATTTGCCC 59.828 50.000 15.45 4.69 41.12 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.035237 TTGACTGCCGTTTCCGTCCT 62.035 55.000 0.00 0.00 0.00 3.85
110 111 0.526211 GGGCTGGCTTTCGGTTTTAG 59.474 55.000 0.00 0.00 0.00 1.85
111 112 1.530323 GGCTGGCTTTCGGTTTTAGA 58.470 50.000 0.00 0.00 0.00 2.10
149 150 2.432628 GTGAGCCGTCGTTGGAGG 60.433 66.667 0.00 0.00 0.00 4.30
154 155 4.052229 CCGTCGTTGGAGGCTCGT 62.052 66.667 8.69 0.00 0.00 4.18
155 156 2.049433 CGTCGTTGGAGGCTCGTT 60.049 61.111 8.69 0.00 0.00 3.85
156 157 2.372690 CGTCGTTGGAGGCTCGTTG 61.373 63.158 8.69 0.00 0.00 4.10
157 158 2.027625 GTCGTTGGAGGCTCGTTGG 61.028 63.158 8.69 0.00 0.00 3.77
158 159 2.204461 TCGTTGGAGGCTCGTTGGA 61.204 57.895 8.69 0.63 0.00 3.53
159 160 1.738099 CGTTGGAGGCTCGTTGGAG 60.738 63.158 8.69 0.00 43.46 3.86
177 178 2.663358 GCAGACAGCTGATGAGTCG 58.337 57.895 23.35 4.91 45.17 4.18
178 179 1.419874 GCAGACAGCTGATGAGTCGC 61.420 60.000 23.35 10.90 45.17 5.19
179 180 0.173029 CAGACAGCTGATGAGTCGCT 59.827 55.000 23.35 0.00 45.17 4.93
181 182 0.805322 GACAGCTGATGAGTCGCTGG 60.805 60.000 23.35 4.85 46.52 4.85
182 183 1.253593 ACAGCTGATGAGTCGCTGGA 61.254 55.000 23.35 0.00 46.52 3.86
183 184 0.528033 CAGCTGATGAGTCGCTGGAG 60.528 60.000 8.42 0.00 42.67 3.86
184 185 1.882167 GCTGATGAGTCGCTGGAGC 60.882 63.158 0.00 0.00 37.78 4.70
185 186 1.815196 CTGATGAGTCGCTGGAGCT 59.185 57.895 0.00 0.00 39.32 4.09
186 187 0.528033 CTGATGAGTCGCTGGAGCTG 60.528 60.000 0.00 0.00 39.32 4.24
187 188 1.227205 GATGAGTCGCTGGAGCTGG 60.227 63.158 0.00 0.00 39.32 4.85
188 189 3.382803 ATGAGTCGCTGGAGCTGGC 62.383 63.158 0.00 0.00 39.32 4.85
189 190 3.768922 GAGTCGCTGGAGCTGGCT 61.769 66.667 0.00 0.00 39.32 4.75
190 191 4.079850 AGTCGCTGGAGCTGGCTG 62.080 66.667 0.00 0.00 39.32 4.85
191 192 4.385405 GTCGCTGGAGCTGGCTGT 62.385 66.667 0.00 0.00 39.32 4.40
192 193 4.074526 TCGCTGGAGCTGGCTGTC 62.075 66.667 0.00 0.00 39.32 3.51
224 235 2.045242 TCTGCTCTCCGCCGTAGT 60.045 61.111 0.00 0.00 38.05 2.73
238 249 2.737679 GCCGTAGTAGAGCAAAATCCGT 60.738 50.000 0.00 0.00 0.00 4.69
240 251 3.550678 CCGTAGTAGAGCAAAATCCGTTC 59.449 47.826 0.00 0.00 0.00 3.95
385 399 1.003233 GGAGGGACGGTGACAGAATTT 59.997 52.381 0.00 0.00 0.00 1.82
437 451 3.383185 TGACGGGGCCATCATTTATTTTC 59.617 43.478 4.39 0.00 0.00 2.29
466 486 5.062809 GTGAAAGAAGGTTATGAGCTCTTCG 59.937 44.000 16.19 0.00 40.16 3.79
516 546 4.803426 GCTCTGTCGGTCGCCCTG 62.803 72.222 0.00 0.00 0.00 4.45
517 547 4.135153 CTCTGTCGGTCGCCCTGG 62.135 72.222 0.00 0.00 0.00 4.45
518 548 4.988716 TCTGTCGGTCGCCCTGGT 62.989 66.667 0.00 0.00 0.00 4.00
519 549 4.003788 CTGTCGGTCGCCCTGGTT 62.004 66.667 0.00 0.00 0.00 3.67
520 550 4.308458 TGTCGGTCGCCCTGGTTG 62.308 66.667 0.00 0.00 0.00 3.77
622 655 2.218953 TAACTATGCTGCTGCGTACC 57.781 50.000 12.96 0.00 43.34 3.34
634 667 1.678627 CTGCGTACCTCTCTATGCACT 59.321 52.381 0.00 0.00 34.38 4.40
635 668 2.879026 CTGCGTACCTCTCTATGCACTA 59.121 50.000 0.00 0.00 34.38 2.74
636 669 2.879026 TGCGTACCTCTCTATGCACTAG 59.121 50.000 0.00 0.00 34.38 2.57
637 670 2.879646 GCGTACCTCTCTATGCACTAGT 59.120 50.000 0.00 0.00 0.00 2.57
647 680 2.802787 ATGCACTAGTAGCACCGATC 57.197 50.000 18.19 0.00 45.95 3.69
659 692 0.657840 CACCGATCCTTGATTTCCGC 59.342 55.000 0.00 0.00 0.00 5.54
668 701 0.326595 TTGATTTCCGCTGGCCAGTA 59.673 50.000 32.81 16.74 0.00 2.74
669 702 0.546122 TGATTTCCGCTGGCCAGTAT 59.454 50.000 32.81 18.03 0.00 2.12
670 703 0.947244 GATTTCCGCTGGCCAGTATG 59.053 55.000 32.81 22.03 0.00 2.39
671 704 0.255890 ATTTCCGCTGGCCAGTATGT 59.744 50.000 32.81 12.50 0.00 2.29
672 705 0.906066 TTTCCGCTGGCCAGTATGTA 59.094 50.000 32.81 14.02 0.00 2.29
683 716 4.709886 TGGCCAGTATGTATAGATACGCAT 59.290 41.667 0.00 1.00 36.06 4.73
702 735 1.281419 TCCCCTTAATCGTTGGAGCA 58.719 50.000 0.00 0.00 0.00 4.26
709 742 4.034510 CCTTAATCGTTGGAGCACTGATTC 59.965 45.833 0.00 0.00 32.07 2.52
743 776 8.754991 AGTATACATTGCTTGACTAGTACTCT 57.245 34.615 0.00 0.00 0.00 3.24
819 860 3.010420 GAGAAGAAAGGGTTTATGCGCT 58.990 45.455 9.73 0.00 0.00 5.92
823 864 3.270877 AGAAAGGGTTTATGCGCTGTAG 58.729 45.455 9.73 0.00 0.00 2.74
827 868 2.143925 GGGTTTATGCGCTGTAGATCC 58.856 52.381 9.73 3.17 0.00 3.36
864 905 9.693739 TGGCTTTCACCTTTCTATGATAATTTA 57.306 29.630 0.00 0.00 0.00 1.40
887 928 5.376854 ACATCTTTTGTACTGCAATGGAC 57.623 39.130 0.00 0.00 36.57 4.02
906 950 4.021368 TGGACTAACTCTCTGCACCTTAAC 60.021 45.833 0.00 0.00 0.00 2.01
919 963 3.129287 GCACCTTAACCATCCTCACAATG 59.871 47.826 0.00 0.00 0.00 2.82
925 969 1.006281 ACCATCCTCACAATGGCATGT 59.994 47.619 0.00 0.00 46.38 3.21
936 980 3.243839 ACAATGGCATGTGTTTGAACCTC 60.244 43.478 0.00 0.00 30.82 3.85
941 985 3.550842 GGCATGTGTTTGAACCTCAACTC 60.551 47.826 0.00 0.00 35.89 3.01
971 1015 3.914426 TTTCCTTGTAGGAGCTCATCC 57.086 47.619 17.19 0.00 46.73 3.51
988 1032 5.758296 GCTCATCCGAATAATAGTTGACCAA 59.242 40.000 0.00 0.00 0.00 3.67
1174 1218 0.739462 CGGCTTTGATAGTGTGGCGA 60.739 55.000 0.00 0.00 46.95 5.54
1222 1266 1.375396 TCACCATTCTCAACGGGCG 60.375 57.895 0.00 0.00 0.00 6.13
1347 1391 1.607509 GCTGCGGTAGATCATGCATCT 60.608 52.381 0.00 10.99 44.73 2.90
1385 1429 6.801539 TTATGATCAGGTAAAATCCATCGC 57.198 37.500 0.09 0.00 0.00 4.58
1410 1454 7.172361 GCTCTCATATCTGAAAACAGGTTATCC 59.828 40.741 0.00 0.00 0.00 2.59
1420 1464 9.981114 CTGAAAACAGGTTATCCTTTATTTTGT 57.019 29.630 9.46 0.00 43.07 2.83
1421 1465 9.757227 TGAAAACAGGTTATCCTTTATTTTGTG 57.243 29.630 9.46 0.00 43.07 3.33
1441 1485 6.508030 TGTGGGTTCTGATATTTAGGCATA 57.492 37.500 0.00 0.00 0.00 3.14
1443 1487 7.168219 TGTGGGTTCTGATATTTAGGCATATC 58.832 38.462 0.00 0.00 36.87 1.63
1485 1530 3.379057 GTCCAGTTGCCTAGTACTCTCTC 59.621 52.174 0.00 0.00 0.00 3.20
1486 1531 3.267291 TCCAGTTGCCTAGTACTCTCTCT 59.733 47.826 0.00 0.00 0.00 3.10
1557 1602 5.615925 AGTCTGACCAACTATATGGGAAC 57.384 43.478 3.76 0.00 45.18 3.62
1590 1635 5.707298 ACATCTGGAACACCAAATTACTCTG 59.293 40.000 0.00 0.00 32.95 3.35
1643 1690 8.973182 TGAACTATGTATATGTGGTGTTGTAGA 58.027 33.333 0.00 0.00 0.00 2.59
1646 1693 5.347620 TGTATATGTGGTGTTGTAGACCC 57.652 43.478 0.00 0.00 31.84 4.46
1648 1695 4.755266 ATATGTGGTGTTGTAGACCCTC 57.245 45.455 0.00 0.00 31.84 4.30
1657 1706 2.812011 GTTGTAGACCCTCGCATGTTTT 59.188 45.455 0.00 0.00 0.00 2.43
1659 1708 3.071479 TGTAGACCCTCGCATGTTTTTC 58.929 45.455 0.00 0.00 0.00 2.29
1661 1710 3.695830 AGACCCTCGCATGTTTTTCTA 57.304 42.857 0.00 0.00 0.00 2.10
1702 1816 6.616577 ACCAAGTTTAAAAATGGAGGGAGTA 58.383 36.000 21.39 0.00 36.75 2.59
1704 1818 7.014905 ACCAAGTTTAAAAATGGAGGGAGTAAC 59.985 37.037 21.39 0.00 36.75 2.50
1710 1824 6.840780 AAAAATGGAGGGAGTAACAATGAG 57.159 37.500 0.00 0.00 0.00 2.90
1711 1825 5.779241 AAATGGAGGGAGTAACAATGAGA 57.221 39.130 0.00 0.00 0.00 3.27
1712 1826 4.762289 ATGGAGGGAGTAACAATGAGAC 57.238 45.455 0.00 0.00 0.00 3.36
1713 1827 3.516586 TGGAGGGAGTAACAATGAGACA 58.483 45.455 0.00 0.00 0.00 3.41
1784 1898 8.846943 TGATGATATACAAAGTGTTCACTTGT 57.153 30.769 17.16 17.32 0.00 3.16
1803 1917 8.154203 TCACTTGTGTCCTGTATTATCTGAAAA 58.846 33.333 0.46 0.00 0.00 2.29
1804 1918 8.230486 CACTTGTGTCCTGTATTATCTGAAAAC 58.770 37.037 0.00 0.00 0.00 2.43
1811 1925 9.774742 GTCCTGTATTATCTGAAAACAATTGAC 57.225 33.333 13.59 1.44 0.00 3.18
1855 1969 8.691661 TTAATTTTCCTATCCACTATGGCTTC 57.308 34.615 0.00 0.00 37.47 3.86
1866 1980 0.750850 TATGGCTTCGGGTACTCTGC 59.249 55.000 0.00 0.00 0.00 4.26
1871 1985 0.741221 CTTCGGGTACTCTGCTTGCC 60.741 60.000 0.00 0.00 0.00 4.52
1879 1993 3.369471 GGTACTCTGCTTGCCTCACATTA 60.369 47.826 0.00 0.00 0.00 1.90
1888 2002 4.142600 GCTTGCCTCACATTAATCGTTCTT 60.143 41.667 0.00 0.00 0.00 2.52
1889 2003 4.944962 TGCCTCACATTAATCGTTCTTG 57.055 40.909 0.00 0.00 0.00 3.02
1894 2009 5.281693 TCACATTAATCGTTCTTGTGCAG 57.718 39.130 0.00 0.00 38.02 4.41
1907 2031 8.963130 TCGTTCTTGTGCAGTTTTTATAAAATG 58.037 29.630 11.33 8.92 41.10 2.32
2010 2134 3.751175 TGGCTTTCCTAATGAACAACGAG 59.249 43.478 0.00 0.00 31.05 4.18
2044 2168 5.694458 GTGAAGAACTTCCTCTTGAGAACTC 59.306 44.000 11.30 0.00 38.77 3.01
2127 2251 0.951558 CAAGTTTCAAGGTGGACCGG 59.048 55.000 0.00 0.00 42.08 5.28
2133 2257 1.646912 TCAAGGTGGACCGGAATGTA 58.353 50.000 9.46 0.00 42.08 2.29
2235 2359 1.056660 GGATTATTCTCCTCCGGGCA 58.943 55.000 0.00 0.00 32.18 5.36
2309 2433 1.528586 GTGCATGCGGCTTATACTGAG 59.471 52.381 14.09 0.00 45.15 3.35
2379 2503 4.157289 ACTGATGGTTGCTCAATGATTGAC 59.843 41.667 3.29 2.66 35.46 3.18
2394 2518 9.930176 TCAATGATTGACCGTCGAATGGTACAT 62.930 40.741 10.38 10.55 37.69 2.29
2481 2612 0.179018 GCAACAGGAACAGGACTGGT 60.179 55.000 4.14 0.00 39.00 4.00
2482 2613 1.750682 GCAACAGGAACAGGACTGGTT 60.751 52.381 4.14 0.00 39.00 3.67
2483 2614 2.222027 CAACAGGAACAGGACTGGTTC 58.778 52.381 4.14 0.00 42.99 3.62
2484 2615 1.807814 ACAGGAACAGGACTGGTTCT 58.192 50.000 4.14 0.00 43.20 3.01
2485 2616 2.175878 CAGGAACAGGACTGGTTCTG 57.824 55.000 11.05 11.05 46.39 3.02
2486 2617 1.417890 CAGGAACAGGACTGGTTCTGT 59.582 52.381 15.99 8.71 46.40 3.41
2487 2618 1.417890 AGGAACAGGACTGGTTCTGTG 59.582 52.381 14.54 0.00 42.67 3.66
2488 2619 1.141053 GGAACAGGACTGGTTCTGTGT 59.859 52.381 14.54 6.12 42.67 3.72
2489 2620 2.421529 GGAACAGGACTGGTTCTGTGTT 60.422 50.000 14.54 1.18 42.67 3.32
2490 2621 3.279434 GAACAGGACTGGTTCTGTGTTT 58.721 45.455 14.54 0.50 42.67 2.83
2491 2622 3.366052 ACAGGACTGGTTCTGTGTTTT 57.634 42.857 13.25 0.00 42.00 2.43
2492 2623 3.279434 ACAGGACTGGTTCTGTGTTTTC 58.721 45.455 13.25 0.00 42.00 2.29
2493 2624 3.278574 CAGGACTGGTTCTGTGTTTTCA 58.721 45.455 1.08 0.00 0.00 2.69
2494 2625 3.885297 CAGGACTGGTTCTGTGTTTTCAT 59.115 43.478 1.08 0.00 0.00 2.57
2495 2626 3.885297 AGGACTGGTTCTGTGTTTTCATG 59.115 43.478 0.00 0.00 0.00 3.07
2496 2627 3.632145 GGACTGGTTCTGTGTTTTCATGT 59.368 43.478 0.00 0.00 0.00 3.21
2497 2628 4.819630 GGACTGGTTCTGTGTTTTCATGTA 59.180 41.667 0.00 0.00 0.00 2.29
2509 2640 7.990917 TGTGTTTTCATGTACAGCTAAAAAGA 58.009 30.769 0.33 1.78 0.00 2.52
2511 2642 9.296400 GTGTTTTCATGTACAGCTAAAAAGAAA 57.704 29.630 0.33 0.00 0.00 2.52
2589 2774 6.676950 CACTTTGACTTGTTGGTATTGCATA 58.323 36.000 0.00 0.00 0.00 3.14
2664 2852 9.174166 GTATGTGACCATTAATTTACCAAGACT 57.826 33.333 0.00 0.00 32.29 3.24
2667 2855 9.391006 TGTGACCATTAATTTACCAAGACTATC 57.609 33.333 0.00 0.00 0.00 2.08
2733 2948 0.998928 ATGTGTGGTAGGGCATGGAA 59.001 50.000 0.00 0.00 0.00 3.53
2737 2952 2.438021 GTGTGGTAGGGCATGGAAGATA 59.562 50.000 0.00 0.00 0.00 1.98
2796 3014 7.432350 AGCAGAAGAAAAGATAACACTTGAG 57.568 36.000 0.00 0.00 0.00 3.02
2849 3069 2.017049 AGTCTTTCGTGCTGCTTGTTT 58.983 42.857 0.00 0.00 0.00 2.83
2871 3091 9.296400 TGTTTGACTTTTGAGTTAAAGTAATGC 57.704 29.630 0.00 0.00 45.68 3.56
2874 3094 9.515020 TTGACTTTTGAGTTAAAGTAATGCTTG 57.485 29.630 0.00 0.00 45.68 4.01
2913 3144 8.575649 TCTGAAATGTAATCCTAAAGTTTCCC 57.424 34.615 0.00 0.00 0.00 3.97
2914 3145 8.390921 TCTGAAATGTAATCCTAAAGTTTCCCT 58.609 33.333 0.00 0.00 0.00 4.20
2915 3146 8.348285 TGAAATGTAATCCTAAAGTTTCCCTG 57.652 34.615 0.00 0.00 0.00 4.45
2919 3150 7.086685 TGTAATCCTAAAGTTTCCCTGTTCT 57.913 36.000 0.00 0.00 0.00 3.01
2926 3157 4.632538 AAGTTTCCCTGTTCTTTGTTCG 57.367 40.909 0.00 0.00 0.00 3.95
2956 3188 5.615544 CGAGTTACAATTTCAGTTGGAGCTG 60.616 44.000 0.00 0.00 34.15 4.24
2985 3217 7.701539 TCCTTGTTACATGATTGTAATGCTT 57.298 32.000 0.00 0.00 46.91 3.91
2986 3218 8.121305 TCCTTGTTACATGATTGTAATGCTTT 57.879 30.769 0.00 0.00 46.91 3.51
3074 3306 2.961062 GCATTAAGATGTGCCCTCCAAT 59.039 45.455 0.00 0.00 35.63 3.16
3144 3376 2.436417 ACGACTGCATGCATTAACCTT 58.564 42.857 22.97 0.00 0.00 3.50
3181 3413 3.571401 ACTTCTGGCTTGATTTTCCACAG 59.429 43.478 0.00 0.00 0.00 3.66
3289 3521 2.323599 TGGGTGTTTGATTTCATGCCA 58.676 42.857 0.00 0.00 0.00 4.92
3293 3525 4.081752 GGGTGTTTGATTTCATGCCATGTA 60.082 41.667 4.31 0.00 0.00 2.29
3294 3526 5.477510 GGTGTTTGATTTCATGCCATGTAA 58.522 37.500 4.31 1.51 0.00 2.41
3298 3530 3.298619 TGATTTCATGCCATGTAAGGGG 58.701 45.455 4.31 0.00 38.99 4.79
3361 3593 2.629617 CAGGTGGTTTGCTCTTGGAAAT 59.370 45.455 0.00 0.00 36.00 2.17
3421 3653 4.153655 CAGTCATCGGCAATAATGGATCTG 59.846 45.833 0.00 0.00 0.00 2.90
3427 3659 3.369147 CGGCAATAATGGATCTGATCGAC 59.631 47.826 11.28 0.00 0.00 4.20
3433 3665 1.598882 TGGATCTGATCGACGAGAGG 58.401 55.000 11.28 0.00 0.00 3.69
3451 3683 0.983378 GGTGGGATGAGCTAGTGGGT 60.983 60.000 0.00 0.00 0.00 4.51
3532 3764 1.095807 GCTGCGACCCCAAGAATACC 61.096 60.000 0.00 0.00 0.00 2.73
3533 3765 0.463833 CTGCGACCCCAAGAATACCC 60.464 60.000 0.00 0.00 0.00 3.69
3559 3791 6.013379 GGTGGAGTTATCATAATGGAGGATCA 60.013 42.308 0.00 0.00 36.25 2.92
3583 3815 4.412199 TGGCCAGGTAATTTACTCTATGCT 59.588 41.667 0.00 0.00 0.00 3.79
3590 3822 8.634444 CAGGTAATTTACTCTATGCTAGTGTCT 58.366 37.037 6.52 0.00 34.65 3.41
3591 3823 9.863650 AGGTAATTTACTCTATGCTAGTGTCTA 57.136 33.333 6.52 0.00 34.65 2.59
3613 3845 9.547753 GTCTAGGATTATTTTAGTGAGCATTCA 57.452 33.333 0.00 0.00 0.00 2.57
3635 3870 2.758009 TGCTGCCAAATCTTCTTTTGC 58.242 42.857 0.00 0.00 35.67 3.68
3641 3876 4.940046 TGCCAAATCTTCTTTTGCAAAACA 59.060 33.333 20.46 8.22 35.67 2.83
3724 3985 5.880054 CTTCATTCGGAAGTTTACCATGT 57.120 39.130 0.00 0.00 46.49 3.21
3725 3986 5.869350 CTTCATTCGGAAGTTTACCATGTC 58.131 41.667 0.00 0.00 46.49 3.06
3726 3987 4.258543 TCATTCGGAAGTTTACCATGTCC 58.741 43.478 0.00 0.00 0.00 4.02
3727 3988 4.019681 TCATTCGGAAGTTTACCATGTCCT 60.020 41.667 0.00 0.00 0.00 3.85
3728 3989 3.328382 TCGGAAGTTTACCATGTCCTG 57.672 47.619 0.00 0.00 0.00 3.86
3731 3992 3.818773 CGGAAGTTTACCATGTCCTGTTT 59.181 43.478 0.00 0.00 0.00 2.83
3733 3994 4.583073 GGAAGTTTACCATGTCCTGTTTGT 59.417 41.667 0.00 0.00 0.00 2.83
3771 4036 5.299148 TGTAATGTTACAGCTACAAACGGT 58.701 37.500 7.38 0.00 38.64 4.83
3773 4038 6.587226 TGTAATGTTACAGCTACAAACGGTAG 59.413 38.462 7.38 0.00 43.60 3.18
3788 4053 6.535865 ACAAACGGTAGCATAATATTGTTCGA 59.464 34.615 0.00 0.00 0.00 3.71
3832 4097 2.027385 GGGACCCTTGATTTGATCTGC 58.973 52.381 2.09 0.00 0.00 4.26
3833 4098 2.357569 GGGACCCTTGATTTGATCTGCT 60.358 50.000 2.09 0.00 0.00 4.24
3834 4099 3.117888 GGGACCCTTGATTTGATCTGCTA 60.118 47.826 2.09 0.00 0.00 3.49
3852 4117 2.356125 GCTACTTCTGATTGCTTGGGGA 60.356 50.000 0.00 0.00 0.00 4.81
3861 4126 2.746279 TTGCTTGGGGAAAGTTCTGA 57.254 45.000 0.00 0.00 38.25 3.27
3862 4127 2.978156 TGCTTGGGGAAAGTTCTGAT 57.022 45.000 0.00 0.00 38.25 2.90
3863 4128 2.795329 TGCTTGGGGAAAGTTCTGATC 58.205 47.619 0.00 0.00 38.25 2.92
3865 4130 3.013219 GCTTGGGGAAAGTTCTGATCTC 58.987 50.000 0.00 0.00 38.25 2.75
3866 4131 3.308046 GCTTGGGGAAAGTTCTGATCTCT 60.308 47.826 0.00 0.00 38.25 3.10
3869 4134 4.655963 TGGGGAAAGTTCTGATCTCTTTG 58.344 43.478 0.00 0.00 32.59 2.77
3870 4135 4.013050 GGGGAAAGTTCTGATCTCTTTGG 58.987 47.826 0.00 0.00 32.59 3.28
3871 4136 4.263506 GGGGAAAGTTCTGATCTCTTTGGA 60.264 45.833 0.00 0.00 32.59 3.53
3872 4137 5.504853 GGGAAAGTTCTGATCTCTTTGGAT 58.495 41.667 0.00 0.00 32.59 3.41
3873 4138 5.356470 GGGAAAGTTCTGATCTCTTTGGATG 59.644 44.000 0.00 0.00 32.59 3.51
3875 4140 3.883669 AGTTCTGATCTCTTTGGATGCC 58.116 45.455 0.00 0.00 0.00 4.40
3878 4248 2.172082 TCTGATCTCTTTGGATGCCTGG 59.828 50.000 0.00 0.00 0.00 4.45
3882 4252 3.744940 TCTCTTTGGATGCCTGGAAAT 57.255 42.857 0.00 0.00 0.00 2.17
3889 4259 2.785269 TGGATGCCTGGAAATCCTATGT 59.215 45.455 22.23 0.00 42.51 2.29
3893 4263 5.649831 GGATGCCTGGAAATCCTATGTATTC 59.350 44.000 17.26 0.00 39.49 1.75
4081 4451 1.466851 GCAAGCAGGCCAGGAAGTTT 61.467 55.000 5.01 0.00 0.00 2.66
4126 4496 1.000827 CTAGTCGCGAGGATGATGCTT 60.001 52.381 10.24 0.00 0.00 3.91
4138 4508 1.288188 TGATGCTTGAGGACCCATCA 58.712 50.000 6.34 6.34 41.06 3.07
4224 4596 3.194116 TCATGGAATGCTTGAAGAAAGGC 59.806 43.478 0.00 0.00 46.21 4.35
4237 4609 2.868899 AGAAAGGCTGGGTTTCTTGAG 58.131 47.619 0.00 0.00 40.61 3.02
4258 4630 8.647143 TTGAGAAAAAGAATTTACTTGCCAAG 57.353 30.769 2.11 2.11 37.28 3.61
4261 4633 5.887214 AAAAGAATTTACTTGCCAAGGGT 57.113 34.783 9.64 0.00 37.28 4.34
4263 4635 5.468540 AAGAATTTACTTGCCAAGGGTTC 57.531 39.130 9.64 7.21 0.00 3.62
4264 4636 4.479158 AGAATTTACTTGCCAAGGGTTCA 58.521 39.130 9.64 0.00 0.00 3.18
4280 4655 3.318275 GGGTTCAAGAAAAAGGAGTCCAC 59.682 47.826 12.86 0.00 0.00 4.02
4361 4736 2.180432 GGTCGCACTACCTTTTCCTT 57.820 50.000 0.00 0.00 36.53 3.36
4362 4737 2.501261 GGTCGCACTACCTTTTCCTTT 58.499 47.619 0.00 0.00 36.53 3.11
4364 4739 4.067192 GGTCGCACTACCTTTTCCTTTTA 58.933 43.478 0.00 0.00 36.53 1.52
4366 4741 5.163784 GGTCGCACTACCTTTTCCTTTTATC 60.164 44.000 0.00 0.00 36.53 1.75
4367 4742 5.410439 GTCGCACTACCTTTTCCTTTTATCA 59.590 40.000 0.00 0.00 0.00 2.15
4368 4743 5.998981 TCGCACTACCTTTTCCTTTTATCAA 59.001 36.000 0.00 0.00 0.00 2.57
4369 4744 6.487331 TCGCACTACCTTTTCCTTTTATCAAA 59.513 34.615 0.00 0.00 0.00 2.69
4370 4745 7.013464 TCGCACTACCTTTTCCTTTTATCAAAA 59.987 33.333 0.00 0.00 0.00 2.44
4412 4823 6.380095 TGTTTATTTTGTACCAGTGACACC 57.620 37.500 0.84 0.00 0.00 4.16
4413 4824 5.886474 TGTTTATTTTGTACCAGTGACACCA 59.114 36.000 0.84 0.00 0.00 4.17
4414 4825 6.547880 TGTTTATTTTGTACCAGTGACACCAT 59.452 34.615 0.84 0.00 0.00 3.55
4415 4826 6.567687 TTATTTTGTACCAGTGACACCATG 57.432 37.500 0.84 0.00 0.00 3.66
4416 4827 2.559698 TTGTACCAGTGACACCATGG 57.440 50.000 11.19 11.19 40.10 3.66
4417 4828 1.723288 TGTACCAGTGACACCATGGA 58.277 50.000 21.47 0.00 37.54 3.41
4418 4829 2.265367 TGTACCAGTGACACCATGGAT 58.735 47.619 21.47 5.75 37.54 3.41
4419 4830 3.445987 TGTACCAGTGACACCATGGATA 58.554 45.455 21.47 6.51 37.54 2.59
4420 4831 3.841255 TGTACCAGTGACACCATGGATAA 59.159 43.478 21.47 0.00 37.54 1.75
4421 4832 4.473196 TGTACCAGTGACACCATGGATAAT 59.527 41.667 21.47 0.00 37.54 1.28
4422 4833 4.591321 ACCAGTGACACCATGGATAATT 57.409 40.909 21.47 0.00 37.54 1.40
4423 4834 4.934356 ACCAGTGACACCATGGATAATTT 58.066 39.130 21.47 0.00 37.54 1.82
4424 4835 5.332743 ACCAGTGACACCATGGATAATTTT 58.667 37.500 21.47 0.00 37.54 1.82
4425 4836 5.779771 ACCAGTGACACCATGGATAATTTTT 59.220 36.000 21.47 0.00 37.54 1.94
4457 4868 6.068010 TGTGAAATGACACCTTGGATAGTTT 58.932 36.000 0.00 0.00 39.69 2.66
4458 4869 7.227873 TGTGAAATGACACCTTGGATAGTTTA 58.772 34.615 0.00 0.00 39.69 2.01
4459 4870 7.888021 TGTGAAATGACACCTTGGATAGTTTAT 59.112 33.333 0.00 0.00 39.69 1.40
4482 4894 4.691860 AGCTTTAGCACACAATCATGAC 57.308 40.909 0.00 0.00 45.16 3.06
4595 5007 6.721571 TTATGTTTGATTTGAGACGAGACC 57.278 37.500 0.00 0.00 0.00 3.85
4596 5008 4.336889 TGTTTGATTTGAGACGAGACCT 57.663 40.909 0.00 0.00 0.00 3.85
4597 5009 4.703897 TGTTTGATTTGAGACGAGACCTT 58.296 39.130 0.00 0.00 0.00 3.50
4598 5010 4.511454 TGTTTGATTTGAGACGAGACCTTG 59.489 41.667 0.00 0.00 0.00 3.61
4601 5013 4.498241 TGATTTGAGACGAGACCTTGATG 58.502 43.478 0.00 0.00 0.00 3.07
4602 5014 4.220602 TGATTTGAGACGAGACCTTGATGA 59.779 41.667 0.00 0.00 0.00 2.92
4603 5015 4.808414 TTTGAGACGAGACCTTGATGAT 57.192 40.909 0.00 0.00 0.00 2.45
4605 5017 5.914898 TTGAGACGAGACCTTGATGATAA 57.085 39.130 0.00 0.00 0.00 1.75
4607 5019 6.471233 TGAGACGAGACCTTGATGATAATT 57.529 37.500 0.00 0.00 0.00 1.40
4610 5022 8.474831 TGAGACGAGACCTTGATGATAATTTTA 58.525 33.333 0.00 0.00 0.00 1.52
4611 5023 9.314321 GAGACGAGACCTTGATGATAATTTTAA 57.686 33.333 0.00 0.00 0.00 1.52
4612 5024 9.838339 AGACGAGACCTTGATGATAATTTTAAT 57.162 29.630 0.00 0.00 0.00 1.40
4787 5280 0.393077 ACGTGTTCTGGTCTTCTGGG 59.607 55.000 0.00 0.00 0.00 4.45
4863 5462 9.665719 AGTTTGTTTTGGTTTACTTGATTGATT 57.334 25.926 0.00 0.00 0.00 2.57
4864 5463 9.701355 GTTTGTTTTGGTTTACTTGATTGATTG 57.299 29.630 0.00 0.00 0.00 2.67
4865 5464 9.658799 TTTGTTTTGGTTTACTTGATTGATTGA 57.341 25.926 0.00 0.00 0.00 2.57
4909 5510 2.029649 GCAGACCACATGCTGAAAACAT 60.030 45.455 2.61 0.00 40.59 2.71
4934 5535 0.036952 CACGCAATCTGGACTGAGGT 60.037 55.000 0.00 0.00 0.00 3.85
4943 5544 3.995636 TCTGGACTGAGGTATTAAGGCT 58.004 45.455 0.00 0.00 0.00 4.58
4985 5586 5.531634 AGTACATTTCGTCAAGTCGGTTAA 58.468 37.500 0.00 0.00 0.00 2.01
4986 5587 6.161381 AGTACATTTCGTCAAGTCGGTTAAT 58.839 36.000 0.00 0.00 0.00 1.40
4987 5588 5.277601 ACATTTCGTCAAGTCGGTTAATG 57.722 39.130 0.00 0.00 34.40 1.90
5012 5618 0.109226 GAGCACTTCGTAAGTCGGCT 60.109 55.000 10.28 10.28 41.70 5.52
5015 5621 1.779569 CACTTCGTAAGTCGGCTTGT 58.220 50.000 13.69 0.00 40.46 3.16
5053 5659 9.804758 ATATATAACTTATAAGTCGGCTTGCTC 57.195 33.333 18.28 0.00 38.57 4.26
5054 5660 3.887621 ACTTATAAGTCGGCTTGCTCA 57.112 42.857 13.69 0.00 32.86 4.26
5055 5661 4.202245 ACTTATAAGTCGGCTTGCTCAA 57.798 40.909 13.69 0.00 32.86 3.02
5056 5662 3.933332 ACTTATAAGTCGGCTTGCTCAAC 59.067 43.478 13.69 0.00 32.86 3.18
5057 5663 1.739067 ATAAGTCGGCTTGCTCAACC 58.261 50.000 13.69 0.00 36.22 3.77
5058 5664 0.394938 TAAGTCGGCTTGCTCAACCA 59.605 50.000 13.69 0.00 36.22 3.67
5059 5665 0.250901 AAGTCGGCTTGCTCAACCAT 60.251 50.000 0.00 0.00 32.92 3.55
5060 5666 0.613260 AGTCGGCTTGCTCAACCATA 59.387 50.000 0.00 0.00 0.00 2.74
5061 5667 1.003118 AGTCGGCTTGCTCAACCATAA 59.997 47.619 0.00 0.00 0.00 1.90
5062 5668 1.810151 GTCGGCTTGCTCAACCATAAA 59.190 47.619 0.00 0.00 0.00 1.40
5063 5669 2.227865 GTCGGCTTGCTCAACCATAAAA 59.772 45.455 0.00 0.00 0.00 1.52
5064 5670 2.487762 TCGGCTTGCTCAACCATAAAAG 59.512 45.455 0.00 0.00 0.00 2.27
5065 5671 2.415893 CGGCTTGCTCAACCATAAAAGG 60.416 50.000 0.00 0.00 0.00 3.11
5066 5672 2.610433 GCTTGCTCAACCATAAAAGGC 58.390 47.619 0.00 0.00 0.00 4.35
5067 5673 2.029110 GCTTGCTCAACCATAAAAGGCA 60.029 45.455 0.00 0.00 0.00 4.75
5068 5674 3.841643 CTTGCTCAACCATAAAAGGCAG 58.158 45.455 0.00 0.00 0.00 4.85
5069 5675 3.153369 TGCTCAACCATAAAAGGCAGA 57.847 42.857 0.00 0.00 0.00 4.26
5070 5676 3.084039 TGCTCAACCATAAAAGGCAGAG 58.916 45.455 0.00 0.00 36.49 3.35
5071 5677 3.084786 GCTCAACCATAAAAGGCAGAGT 58.915 45.455 0.00 0.00 36.08 3.24
5072 5678 4.261801 GCTCAACCATAAAAGGCAGAGTA 58.738 43.478 0.00 0.00 36.08 2.59
5073 5679 4.333926 GCTCAACCATAAAAGGCAGAGTAG 59.666 45.833 0.00 0.00 36.08 2.57
5074 5680 5.491982 CTCAACCATAAAAGGCAGAGTAGT 58.508 41.667 0.00 0.00 31.74 2.73
5075 5681 5.876357 TCAACCATAAAAGGCAGAGTAGTT 58.124 37.500 0.00 0.00 0.00 2.24
5076 5682 6.303839 TCAACCATAAAAGGCAGAGTAGTTT 58.696 36.000 0.00 0.00 0.00 2.66
5077 5683 6.775629 TCAACCATAAAAGGCAGAGTAGTTTT 59.224 34.615 0.00 0.00 0.00 2.43
5078 5684 6.575162 ACCATAAAAGGCAGAGTAGTTTTG 57.425 37.500 0.00 0.00 0.00 2.44
5079 5685 6.303839 ACCATAAAAGGCAGAGTAGTTTTGA 58.696 36.000 0.00 0.00 0.00 2.69
5080 5686 6.775629 ACCATAAAAGGCAGAGTAGTTTTGAA 59.224 34.615 0.00 0.00 0.00 2.69
5081 5687 7.084486 CCATAAAAGGCAGAGTAGTTTTGAAC 58.916 38.462 0.00 0.00 0.00 3.18
5082 5688 5.515797 AAAAGGCAGAGTAGTTTTGAACC 57.484 39.130 0.00 0.00 0.00 3.62
5083 5689 3.857157 AGGCAGAGTAGTTTTGAACCA 57.143 42.857 0.00 0.00 0.00 3.67
5084 5690 3.744660 AGGCAGAGTAGTTTTGAACCAG 58.255 45.455 0.00 0.00 0.00 4.00
5085 5691 3.391296 AGGCAGAGTAGTTTTGAACCAGA 59.609 43.478 0.00 0.00 0.00 3.86
5086 5692 3.748568 GGCAGAGTAGTTTTGAACCAGAG 59.251 47.826 0.00 0.00 0.00 3.35
5087 5693 4.381411 GCAGAGTAGTTTTGAACCAGAGT 58.619 43.478 0.00 0.00 0.00 3.24
5088 5694 5.510861 GGCAGAGTAGTTTTGAACCAGAGTA 60.511 44.000 0.00 0.00 0.00 2.59
5089 5695 5.405873 GCAGAGTAGTTTTGAACCAGAGTAC 59.594 44.000 0.00 0.00 0.00 2.73
5090 5696 6.513180 CAGAGTAGTTTTGAACCAGAGTACA 58.487 40.000 0.00 0.00 0.00 2.90
5091 5697 6.984474 CAGAGTAGTTTTGAACCAGAGTACAA 59.016 38.462 0.00 0.00 0.00 2.41
5092 5698 7.494625 CAGAGTAGTTTTGAACCAGAGTACAAA 59.505 37.037 0.00 0.00 0.00 2.83
5093 5699 8.211629 AGAGTAGTTTTGAACCAGAGTACAAAT 58.788 33.333 0.00 0.00 33.38 2.32
5094 5700 8.379457 AGTAGTTTTGAACCAGAGTACAAATC 57.621 34.615 0.00 0.00 33.38 2.17
5095 5701 7.990886 AGTAGTTTTGAACCAGAGTACAAATCA 59.009 33.333 0.00 0.00 33.38 2.57
5096 5702 7.264373 AGTTTTGAACCAGAGTACAAATCAG 57.736 36.000 0.00 0.00 33.38 2.90
5097 5703 7.054124 AGTTTTGAACCAGAGTACAAATCAGA 58.946 34.615 0.00 0.00 33.38 3.27
5098 5704 7.227512 AGTTTTGAACCAGAGTACAAATCAGAG 59.772 37.037 0.00 0.00 33.38 3.35
5099 5705 5.152623 TGAACCAGAGTACAAATCAGAGG 57.847 43.478 0.00 0.00 0.00 3.69
5100 5706 4.593206 TGAACCAGAGTACAAATCAGAGGT 59.407 41.667 0.00 0.00 0.00 3.85
5101 5707 5.778241 TGAACCAGAGTACAAATCAGAGGTA 59.222 40.000 0.00 0.00 0.00 3.08
5102 5708 5.923733 ACCAGAGTACAAATCAGAGGTAG 57.076 43.478 0.00 0.00 0.00 3.18
5103 5709 5.580998 ACCAGAGTACAAATCAGAGGTAGA 58.419 41.667 0.00 0.00 0.00 2.59
5104 5710 5.654650 ACCAGAGTACAAATCAGAGGTAGAG 59.345 44.000 0.00 0.00 0.00 2.43
5105 5711 5.654650 CCAGAGTACAAATCAGAGGTAGAGT 59.345 44.000 0.00 0.00 0.00 3.24
5106 5712 6.183360 CCAGAGTACAAATCAGAGGTAGAGTC 60.183 46.154 0.00 0.00 0.00 3.36
5107 5713 5.889289 AGAGTACAAATCAGAGGTAGAGTCC 59.111 44.000 0.00 0.00 0.00 3.85
5108 5714 4.641094 AGTACAAATCAGAGGTAGAGTCCG 59.359 45.833 0.00 0.00 0.00 4.79
5109 5715 2.761208 ACAAATCAGAGGTAGAGTCCGG 59.239 50.000 0.00 0.00 0.00 5.14
5110 5716 2.074729 AATCAGAGGTAGAGTCCGGG 57.925 55.000 0.00 0.00 0.00 5.73
5111 5717 0.468400 ATCAGAGGTAGAGTCCGGGC 60.468 60.000 0.00 0.00 0.00 6.13
5112 5718 2.128507 CAGAGGTAGAGTCCGGGCC 61.129 68.421 0.08 0.00 0.00 5.80
5113 5719 2.838693 GAGGTAGAGTCCGGGCCC 60.839 72.222 13.57 13.57 0.00 5.80
5114 5720 3.674050 GAGGTAGAGTCCGGGCCCA 62.674 68.421 24.92 0.00 0.00 5.36
5115 5721 2.686106 GGTAGAGTCCGGGCCCAA 60.686 66.667 24.92 6.09 0.00 4.12
5116 5722 2.070650 GGTAGAGTCCGGGCCCAAT 61.071 63.158 24.92 0.83 0.00 3.16
5117 5723 1.632965 GGTAGAGTCCGGGCCCAATT 61.633 60.000 24.92 5.60 0.00 2.32
5118 5724 0.179054 GTAGAGTCCGGGCCCAATTC 60.179 60.000 24.92 15.31 0.00 2.17
5119 5725 0.619255 TAGAGTCCGGGCCCAATTCA 60.619 55.000 24.92 3.95 0.00 2.57
5120 5726 1.452108 GAGTCCGGGCCCAATTCAG 60.452 63.158 24.92 3.40 0.00 3.02
5121 5727 3.140814 GTCCGGGCCCAATTCAGC 61.141 66.667 24.92 0.00 0.00 4.26
5127 5733 3.903208 GGCCCAATTCAGCCTAAGA 57.097 52.632 7.84 0.00 46.14 2.10
5128 5734 1.685148 GGCCCAATTCAGCCTAAGAG 58.315 55.000 7.84 0.00 46.14 2.85
5129 5735 1.064389 GGCCCAATTCAGCCTAAGAGT 60.064 52.381 7.84 0.00 46.14 3.24
5130 5736 2.293170 GCCCAATTCAGCCTAAGAGTC 58.707 52.381 0.00 0.00 0.00 3.36
5131 5737 2.924421 CCCAATTCAGCCTAAGAGTCC 58.076 52.381 0.00 0.00 0.00 3.85
5132 5738 2.239654 CCCAATTCAGCCTAAGAGTCCA 59.760 50.000 0.00 0.00 0.00 4.02
5133 5739 3.539604 CCAATTCAGCCTAAGAGTCCAG 58.460 50.000 0.00 0.00 0.00 3.86
5134 5740 3.539604 CAATTCAGCCTAAGAGTCCAGG 58.460 50.000 4.33 4.33 34.85 4.45
5135 5741 2.327325 TTCAGCCTAAGAGTCCAGGT 57.673 50.000 9.54 0.00 34.18 4.00
5136 5742 1.561643 TCAGCCTAAGAGTCCAGGTG 58.438 55.000 9.54 7.19 34.18 4.00
5137 5743 1.203187 TCAGCCTAAGAGTCCAGGTGT 60.203 52.381 9.54 0.00 34.18 4.16
5138 5744 2.042569 TCAGCCTAAGAGTCCAGGTGTA 59.957 50.000 9.54 0.00 34.18 2.90
5139 5745 2.832129 CAGCCTAAGAGTCCAGGTGTAA 59.168 50.000 9.54 0.00 34.18 2.41
5140 5746 3.452627 CAGCCTAAGAGTCCAGGTGTAAT 59.547 47.826 9.54 0.00 34.18 1.89
5141 5747 4.080863 CAGCCTAAGAGTCCAGGTGTAATT 60.081 45.833 9.54 0.00 34.18 1.40
5142 5748 5.128827 CAGCCTAAGAGTCCAGGTGTAATTA 59.871 44.000 9.54 0.00 34.18 1.40
5143 5749 5.905913 AGCCTAAGAGTCCAGGTGTAATTAT 59.094 40.000 9.54 0.00 34.18 1.28
5144 5750 7.015292 CAGCCTAAGAGTCCAGGTGTAATTATA 59.985 40.741 9.54 0.00 34.18 0.98
5145 5751 7.567622 AGCCTAAGAGTCCAGGTGTAATTATAA 59.432 37.037 9.54 0.00 34.18 0.98
5146 5752 8.376270 GCCTAAGAGTCCAGGTGTAATTATAAT 58.624 37.037 9.54 0.00 34.18 1.28
5147 5753 9.712305 CCTAAGAGTCCAGGTGTAATTATAATG 57.288 37.037 0.00 0.00 0.00 1.90
5148 5754 9.712305 CTAAGAGTCCAGGTGTAATTATAATGG 57.288 37.037 0.00 7.89 0.00 3.16
5149 5755 7.931015 AGAGTCCAGGTGTAATTATAATGGA 57.069 36.000 11.30 11.30 33.11 3.41
5150 5756 8.331931 AGAGTCCAGGTGTAATTATAATGGAA 57.668 34.615 15.03 2.81 37.13 3.53
5151 5757 8.211629 AGAGTCCAGGTGTAATTATAATGGAAC 58.788 37.037 15.03 12.78 37.13 3.62
5152 5758 7.287810 AGTCCAGGTGTAATTATAATGGAACC 58.712 38.462 15.03 12.58 37.13 3.62
5153 5759 7.128883 AGTCCAGGTGTAATTATAATGGAACCT 59.871 37.037 15.03 15.54 37.13 3.50
5154 5760 7.778382 GTCCAGGTGTAATTATAATGGAACCTT 59.222 37.037 17.47 6.64 37.13 3.50
5155 5761 7.777910 TCCAGGTGTAATTATAATGGAACCTTG 59.222 37.037 17.47 15.35 34.59 3.61
5156 5762 7.559897 CCAGGTGTAATTATAATGGAACCTTGT 59.440 37.037 17.47 2.66 34.59 3.16
5157 5763 8.405531 CAGGTGTAATTATAATGGAACCTTGTG 58.594 37.037 17.47 8.89 34.59 3.33
5158 5764 8.333235 AGGTGTAATTATAATGGAACCTTGTGA 58.667 33.333 15.54 0.00 32.96 3.58
5159 5765 9.131791 GGTGTAATTATAATGGAACCTTGTGAT 57.868 33.333 12.97 0.00 0.00 3.06
5160 5766 9.950680 GTGTAATTATAATGGAACCTTGTGATG 57.049 33.333 0.00 0.00 0.00 3.07
5161 5767 9.913310 TGTAATTATAATGGAACCTTGTGATGA 57.087 29.630 0.00 0.00 0.00 2.92
5163 5769 6.942532 TTATAATGGAACCTTGTGATGAGC 57.057 37.500 0.00 0.00 0.00 4.26
5164 5770 3.446442 AATGGAACCTTGTGATGAGCT 57.554 42.857 0.00 0.00 0.00 4.09
5165 5771 2.479566 TGGAACCTTGTGATGAGCTC 57.520 50.000 6.82 6.82 0.00 4.09
5166 5772 1.699083 TGGAACCTTGTGATGAGCTCA 59.301 47.619 20.79 20.79 0.00 4.26
5176 5782 4.732285 GTGATGAGCTCACGAAAAGAAA 57.268 40.909 20.97 0.00 44.58 2.52
5177 5783 5.095691 GTGATGAGCTCACGAAAAGAAAA 57.904 39.130 20.97 0.00 44.58 2.29
5178 5784 5.510671 GTGATGAGCTCACGAAAAGAAAAA 58.489 37.500 20.97 0.00 44.58 1.94
5179 5785 5.622856 GTGATGAGCTCACGAAAAGAAAAAG 59.377 40.000 20.97 0.00 44.58 2.27
5180 5786 4.552166 TGAGCTCACGAAAAGAAAAAGG 57.448 40.909 13.74 0.00 0.00 3.11
5181 5787 3.315191 TGAGCTCACGAAAAGAAAAAGGG 59.685 43.478 13.74 0.00 0.00 3.95
5182 5788 2.623416 AGCTCACGAAAAGAAAAAGGGG 59.377 45.455 0.00 0.00 0.00 4.79
5183 5789 2.288213 GCTCACGAAAAGAAAAAGGGGG 60.288 50.000 0.00 0.00 0.00 5.40
5184 5790 1.684450 TCACGAAAAGAAAAAGGGGGC 59.316 47.619 0.00 0.00 0.00 5.80
5185 5791 1.410882 CACGAAAAGAAAAAGGGGGCA 59.589 47.619 0.00 0.00 0.00 5.36
5186 5792 2.112190 ACGAAAAGAAAAAGGGGGCAA 58.888 42.857 0.00 0.00 0.00 4.52
5187 5793 2.502130 ACGAAAAGAAAAAGGGGGCAAA 59.498 40.909 0.00 0.00 0.00 3.68
5188 5794 3.135712 ACGAAAAGAAAAAGGGGGCAAAT 59.864 39.130 0.00 0.00 0.00 2.32
5189 5795 4.133820 CGAAAAGAAAAAGGGGGCAAATT 58.866 39.130 0.00 0.00 0.00 1.82
5190 5796 4.024133 CGAAAAGAAAAAGGGGGCAAATTG 60.024 41.667 0.00 0.00 0.00 2.32
5191 5797 2.566833 AGAAAAAGGGGGCAAATTGC 57.433 45.000 9.87 9.87 44.08 3.56
5192 5798 1.155889 GAAAAAGGGGGCAAATTGCG 58.844 50.000 12.15 0.00 46.21 4.85
5193 5799 0.761802 AAAAAGGGGGCAAATTGCGA 59.238 45.000 12.15 0.00 46.21 5.10
5194 5800 0.983467 AAAAGGGGGCAAATTGCGAT 59.017 45.000 12.15 0.00 46.21 4.58
5195 5801 0.536724 AAAGGGGGCAAATTGCGATC 59.463 50.000 12.15 4.14 46.21 3.69
5196 5802 1.666209 AAGGGGGCAAATTGCGATCG 61.666 55.000 11.69 11.69 46.21 3.69
5197 5803 2.412937 GGGGCAAATTGCGATCGG 59.587 61.111 18.30 0.00 46.21 4.18
5198 5804 2.118404 GGGGCAAATTGCGATCGGA 61.118 57.895 18.30 12.19 46.21 4.55
5199 5805 1.662438 GGGGCAAATTGCGATCGGAA 61.662 55.000 24.42 24.42 46.21 4.30
5200 5806 0.172352 GGGCAAATTGCGATCGGAAA 59.828 50.000 25.86 9.84 46.21 3.13
5201 5807 1.403514 GGGCAAATTGCGATCGGAAAA 60.404 47.619 25.86 4.60 46.21 2.29
5202 5808 2.333014 GGCAAATTGCGATCGGAAAAA 58.667 42.857 25.86 3.76 46.21 1.94
5216 5822 3.968773 AAAAAGCCAAGGCAGCCA 58.031 50.000 15.80 0.00 44.88 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.223044 GCGGCATCTCTAAAACCGAAAG 60.223 50.000 3.58 0.00 46.71 2.62
110 111 1.273887 CGATTTCGTGCGGCATCTC 59.726 57.895 5.72 0.00 34.11 2.75
111 112 2.173669 CCGATTTCGTGCGGCATCT 61.174 57.895 5.72 0.00 41.17 2.90
130 131 1.734477 CTCCAACGACGGCTCACTG 60.734 63.158 0.00 0.00 0.00 3.66
150 151 3.867771 GCTGTCTGCTCCAACGAG 58.132 61.111 0.00 0.00 39.33 4.18
159 160 1.419874 GCGACTCATCAGCTGTCTGC 61.420 60.000 14.67 7.79 40.13 4.26
184 185 3.989698 AATCGACGCGGACAGCCAG 62.990 63.158 12.47 0.00 44.76 4.85
185 186 3.982372 GAATCGACGCGGACAGCCA 62.982 63.158 12.47 0.00 44.76 4.75
186 187 3.255379 GAATCGACGCGGACAGCC 61.255 66.667 12.47 0.00 44.76 4.85
187 188 3.255379 GGAATCGACGCGGACAGC 61.255 66.667 12.47 0.00 43.95 4.40
188 189 2.949678 CGGAATCGACGCGGACAG 60.950 66.667 12.47 0.00 39.00 3.51
195 196 1.941734 GAGCAGAGCGGAATCGACG 60.942 63.158 0.00 0.00 39.00 5.12
224 235 5.048991 GGAAAGTTGAACGGATTTTGCTCTA 60.049 40.000 0.00 0.00 0.00 2.43
238 249 6.071952 GGCTGTATCATTTCAGGAAAGTTGAA 60.072 38.462 0.66 0.00 33.32 2.69
240 251 5.416952 AGGCTGTATCATTTCAGGAAAGTTG 59.583 40.000 0.66 0.00 33.32 3.16
437 451 7.821846 AGAGCTCATAACCTTCTTTCACTTTAG 59.178 37.037 17.77 0.00 0.00 1.85
466 486 1.548269 CGGATCTGAATCTAGAGGGGC 59.452 57.143 0.00 0.00 32.12 5.80
516 546 1.358759 CTGACGCAACCAACCAACC 59.641 57.895 0.00 0.00 0.00 3.77
517 547 1.299089 GCTGACGCAACCAACCAAC 60.299 57.895 0.00 0.00 35.78 3.77
518 548 2.829206 CGCTGACGCAACCAACCAA 61.829 57.895 0.00 0.00 35.30 3.67
519 549 3.276091 CGCTGACGCAACCAACCA 61.276 61.111 0.00 0.00 35.30 3.67
544 574 1.329906 CGATGAAATCAGAGCCTGCAC 59.670 52.381 0.00 0.00 45.97 4.57
622 655 3.058570 CGGTGCTACTAGTGCATAGAGAG 60.059 52.174 18.61 2.63 42.69 3.20
634 667 4.202223 GGAAATCAAGGATCGGTGCTACTA 60.202 45.833 0.00 0.00 0.00 1.82
635 668 3.432326 GGAAATCAAGGATCGGTGCTACT 60.432 47.826 0.00 0.00 0.00 2.57
636 669 2.872858 GGAAATCAAGGATCGGTGCTAC 59.127 50.000 0.00 0.00 0.00 3.58
637 670 2.483013 CGGAAATCAAGGATCGGTGCTA 60.483 50.000 0.00 0.00 0.00 3.49
647 680 1.660560 CTGGCCAGCGGAAATCAAGG 61.661 60.000 22.33 0.00 0.00 3.61
659 692 4.157840 TGCGTATCTATACATACTGGCCAG 59.842 45.833 31.60 31.60 32.87 4.85
668 701 7.470147 CGATTAAGGGGATGCGTATCTATACAT 60.470 40.741 13.38 0.00 33.68 2.29
669 702 6.183360 CGATTAAGGGGATGCGTATCTATACA 60.183 42.308 13.38 0.00 33.68 2.29
670 703 6.183360 ACGATTAAGGGGATGCGTATCTATAC 60.183 42.308 13.38 2.12 33.68 1.47
671 704 5.889853 ACGATTAAGGGGATGCGTATCTATA 59.110 40.000 13.38 0.00 33.68 1.31
672 705 4.710375 ACGATTAAGGGGATGCGTATCTAT 59.290 41.667 13.38 0.62 33.68 1.98
683 716 1.065709 GTGCTCCAACGATTAAGGGGA 60.066 52.381 0.00 0.00 0.00 4.81
702 735 6.747414 TGTATACTATTGGCAGGAATCAGT 57.253 37.500 4.17 0.00 0.00 3.41
709 742 5.764686 TCAAGCAATGTATACTATTGGCAGG 59.235 40.000 20.15 12.68 36.33 4.85
803 842 3.267483 TCTACAGCGCATAAACCCTTTC 58.733 45.455 11.47 0.00 0.00 2.62
815 856 0.370273 CACAAACGGATCTACAGCGC 59.630 55.000 0.00 0.00 0.00 5.92
819 860 3.659786 CCAGTTCACAAACGGATCTACA 58.340 45.455 0.00 0.00 40.48 2.74
823 864 1.523758 AGCCAGTTCACAAACGGATC 58.476 50.000 0.00 0.00 40.48 3.36
827 868 2.842208 TGAAAGCCAGTTCACAAACG 57.158 45.000 0.00 0.00 40.48 3.60
864 905 5.536161 AGTCCATTGCAGTACAAAAGATGTT 59.464 36.000 0.00 0.00 42.86 2.71
865 906 5.072741 AGTCCATTGCAGTACAAAAGATGT 58.927 37.500 0.00 0.00 42.86 3.06
866 907 5.633830 AGTCCATTGCAGTACAAAAGATG 57.366 39.130 0.00 0.00 42.86 2.90
867 908 6.942576 AGTTAGTCCATTGCAGTACAAAAGAT 59.057 34.615 0.00 0.00 42.86 2.40
868 909 6.296026 AGTTAGTCCATTGCAGTACAAAAGA 58.704 36.000 0.00 0.00 42.86 2.52
869 910 6.428159 AGAGTTAGTCCATTGCAGTACAAAAG 59.572 38.462 0.00 0.00 42.86 2.27
870 911 6.296026 AGAGTTAGTCCATTGCAGTACAAAA 58.704 36.000 0.00 0.00 42.86 2.44
871 912 5.865085 AGAGTTAGTCCATTGCAGTACAAA 58.135 37.500 0.00 0.00 42.86 2.83
872 913 5.246203 AGAGAGTTAGTCCATTGCAGTACAA 59.754 40.000 0.00 0.00 44.01 2.41
873 914 4.772624 AGAGAGTTAGTCCATTGCAGTACA 59.227 41.667 0.00 0.00 0.00 2.90
887 928 4.537135 TGGTTAAGGTGCAGAGAGTTAG 57.463 45.455 0.00 0.00 0.00 2.34
906 950 1.771565 ACATGCCATTGTGAGGATGG 58.228 50.000 0.00 0.00 45.52 3.51
919 963 2.362077 AGTTGAGGTTCAAACACATGCC 59.638 45.455 0.00 0.00 38.22 4.40
953 997 1.063942 TCGGATGAGCTCCTACAAGGA 60.064 52.381 12.15 0.00 43.43 3.36
959 1003 6.719829 TCAACTATTATTCGGATGAGCTCCTA 59.280 38.462 12.15 0.00 42.47 2.94
971 1015 5.220854 CCCTGCTTTGGTCAACTATTATTCG 60.221 44.000 0.00 0.00 0.00 3.34
977 1021 4.862641 ATACCCTGCTTTGGTCAACTAT 57.137 40.909 0.00 0.00 37.31 2.12
988 1032 5.426833 ACACTCTCTTCATTATACCCTGCTT 59.573 40.000 0.00 0.00 0.00 3.91
1047 1091 8.515695 TTAGTAACCGTGAGAGATCAAGATTA 57.484 34.615 0.00 0.00 0.00 1.75
1140 1184 0.106708 AGCCGTCATTATGCCGATGT 59.893 50.000 0.00 0.00 0.00 3.06
1174 1218 2.800736 GCGGAATGCAGGCGAATT 59.199 55.556 0.00 0.00 45.45 2.17
1297 1341 0.673437 ACAGGTTGGCCACGAAAATG 59.327 50.000 3.88 1.03 37.19 2.32
1347 1391 4.409901 TGATCATAATTGAGCACCTCCTCA 59.590 41.667 0.00 0.00 43.04 3.86
1414 1458 6.667414 TGCCTAAATATCAGAACCCACAAAAT 59.333 34.615 0.00 0.00 0.00 1.82
1416 1460 5.575157 TGCCTAAATATCAGAACCCACAAA 58.425 37.500 0.00 0.00 0.00 2.83
1419 1463 7.398024 AGATATGCCTAAATATCAGAACCCAC 58.602 38.462 6.89 0.00 40.55 4.61
1420 1464 7.574021 AGATATGCCTAAATATCAGAACCCA 57.426 36.000 6.89 0.00 40.55 4.51
1421 1465 9.959721 TTTAGATATGCCTAAATATCAGAACCC 57.040 33.333 6.89 0.00 40.55 4.11
1501 1546 9.538508 GTTTGACTTAGACAAACCTAGAACTAA 57.461 33.333 22.73 0.00 46.17 2.24
1552 1597 8.784043 GTGTTCCAGATGTTAATATATGTTCCC 58.216 37.037 6.15 0.00 0.00 3.97
1565 1610 6.207417 CAGAGTAATTTGGTGTTCCAGATGTT 59.793 38.462 0.00 0.00 45.22 2.71
1643 1690 3.008049 ACTCTAGAAAAACATGCGAGGGT 59.992 43.478 0.00 0.00 0.00 4.34
1646 1693 4.452455 ACCAACTCTAGAAAAACATGCGAG 59.548 41.667 0.00 0.00 0.00 5.03
1648 1695 4.213270 TGACCAACTCTAGAAAAACATGCG 59.787 41.667 0.00 0.00 0.00 4.73
1657 1706 6.891388 TGGTTAAGTTTGACCAACTCTAGAA 58.109 36.000 6.08 0.00 45.77 2.10
1680 1729 7.947282 TGTTACTCCCTCCATTTTTAAACTTG 58.053 34.615 0.00 0.00 0.00 3.16
1689 1738 5.014123 TGTCTCATTGTTACTCCCTCCATTT 59.986 40.000 0.00 0.00 0.00 2.32
1690 1739 4.536090 TGTCTCATTGTTACTCCCTCCATT 59.464 41.667 0.00 0.00 0.00 3.16
1693 1807 3.515901 AGTGTCTCATTGTTACTCCCTCC 59.484 47.826 0.00 0.00 0.00 4.30
1710 1824 8.848474 ACAGGCCATATAATAAATGTAGTGTC 57.152 34.615 5.01 0.00 0.00 3.67
1711 1825 9.066892 CAACAGGCCATATAATAAATGTAGTGT 57.933 33.333 5.01 0.00 0.00 3.55
1712 1826 9.283768 TCAACAGGCCATATAATAAATGTAGTG 57.716 33.333 5.01 0.00 0.00 2.74
1713 1827 9.507329 CTCAACAGGCCATATAATAAATGTAGT 57.493 33.333 5.01 0.00 0.00 2.73
1730 1844 3.895232 TTGAGAGTATCCTCAACAGGC 57.105 47.619 0.00 0.00 45.25 4.85
1755 1869 9.507329 AGTGAACACTTTGTATATCATCAGTTT 57.493 29.630 1.32 0.00 38.83 2.66
1784 1898 9.513906 TCAATTGTTTTCAGATAATACAGGACA 57.486 29.630 5.13 0.00 0.00 4.02
1803 1917 3.673052 CGATGGGAAATTGCGTCAATTGT 60.673 43.478 15.33 8.29 42.32 2.71
1804 1918 2.853594 CGATGGGAAATTGCGTCAATTG 59.146 45.455 15.33 0.00 42.32 2.32
1811 1925 7.692908 AATTAAATTACGATGGGAAATTGCG 57.307 32.000 0.00 0.00 0.00 4.85
1839 1953 1.971357 ACCCGAAGCCATAGTGGATAG 59.029 52.381 0.00 0.00 40.96 2.08
1841 1955 1.692519 GTACCCGAAGCCATAGTGGAT 59.307 52.381 0.00 0.00 40.96 3.41
1843 1957 1.068741 GAGTACCCGAAGCCATAGTGG 59.931 57.143 0.00 0.00 41.55 4.00
1855 1969 1.153549 GAGGCAAGCAGAGTACCCG 60.154 63.158 0.00 0.00 0.00 5.28
1866 1980 5.106555 ACAAGAACGATTAATGTGAGGCAAG 60.107 40.000 0.00 0.00 0.00 4.01
1871 1985 5.106948 ACTGCACAAGAACGATTAATGTGAG 60.107 40.000 8.27 5.58 43.01 3.51
1879 1993 9.522804 TTTTATAAAAACTGCACAAGAACGATT 57.477 25.926 8.20 0.00 0.00 3.34
1935 2059 7.494922 AACCTGCCAATGTAAGGATAAAATT 57.505 32.000 5.58 0.00 34.97 1.82
1950 2074 1.142748 CCGCACAAAAACCTGCCAA 59.857 52.632 0.00 0.00 0.00 4.52
1951 2075 2.790791 CCCGCACAAAAACCTGCCA 61.791 57.895 0.00 0.00 0.00 4.92
2010 2134 5.249420 AGGAAGTTCTTCACTATTTCAGGC 58.751 41.667 13.44 0.00 32.94 4.85
2044 2168 1.888215 TCTGAGCTTTGCAAGTGGAG 58.112 50.000 0.00 0.00 0.00 3.86
2079 2203 1.451067 CTCCTGCTCCAAGCTTGAAG 58.549 55.000 28.05 18.96 42.97 3.02
2127 2251 6.791303 TGTTTCAGTGTTCCTGTTTACATTC 58.209 36.000 0.00 0.00 42.19 2.67
2133 2257 7.257722 CAACTAATGTTTCAGTGTTCCTGTTT 58.742 34.615 0.00 0.00 37.07 2.83
2309 2433 4.509600 CGAATCCCTCAGATAAGCAAAGAC 59.490 45.833 0.00 0.00 33.66 3.01
2379 2503 1.581934 ATGCATGTACCATTCGACGG 58.418 50.000 0.00 0.00 0.00 4.79
2394 2518 8.668510 TTTAAAGCAAATAAAGGTGAAATGCA 57.331 26.923 0.00 0.00 34.89 3.96
2451 2582 3.153919 GTTCCTGTTGCCACCTCAATTA 58.846 45.455 0.00 0.00 0.00 1.40
2481 2612 7.561021 TTTAGCTGTACATGAAAACACAGAA 57.439 32.000 0.00 0.00 40.67 3.02
2482 2613 7.561021 TTTTAGCTGTACATGAAAACACAGA 57.439 32.000 0.00 0.00 40.67 3.41
2483 2614 8.128582 TCTTTTTAGCTGTACATGAAAACACAG 58.871 33.333 0.00 5.83 41.06 3.66
2484 2615 7.990917 TCTTTTTAGCTGTACATGAAAACACA 58.009 30.769 0.00 0.00 0.00 3.72
2485 2616 8.850454 TTCTTTTTAGCTGTACATGAAAACAC 57.150 30.769 0.00 0.00 0.00 3.32
2540 2725 3.450904 TGCTATCTGTAGGTGTCCCTTT 58.549 45.455 0.00 0.00 42.66 3.11
2721 2936 4.899352 AGATGTATCTTCCATGCCCTAC 57.101 45.455 0.00 0.00 31.97 3.18
2767 2984 9.952188 AAGTGTTATCTTTTCTTCTGCTAAAAC 57.048 29.630 0.00 0.00 0.00 2.43
2832 3052 2.111756 GTCAAACAAGCAGCACGAAAG 58.888 47.619 0.00 0.00 0.00 2.62
2849 3069 8.898761 TCAAGCATTACTTTAACTCAAAAGTCA 58.101 29.630 5.33 0.00 44.43 3.41
2870 3090 4.701765 TCAGAATAGAGATTGCCTCAAGC 58.298 43.478 0.00 0.00 44.40 4.01
2871 3091 7.282675 ACATTTCAGAATAGAGATTGCCTCAAG 59.717 37.037 0.00 0.00 44.40 3.02
2873 3093 6.656902 ACATTTCAGAATAGAGATTGCCTCA 58.343 36.000 0.00 0.00 44.40 3.86
2874 3094 8.668510 TTACATTTCAGAATAGAGATTGCCTC 57.331 34.615 0.00 0.00 42.28 4.70
2913 3144 3.629058 TCGAGAGTCGAACAAAGAACAG 58.371 45.455 0.00 0.00 46.90 3.16
2914 3145 3.703286 TCGAGAGTCGAACAAAGAACA 57.297 42.857 0.00 0.00 46.90 3.18
2926 3157 6.128795 CCAACTGAAATTGTAACTCGAGAGTC 60.129 42.308 21.68 8.84 41.58 3.36
3016 3248 5.608437 AGCTTGGATCTCAATAGGATAACCA 59.392 40.000 0.00 0.00 35.08 3.67
3074 3306 0.326595 TCACCATCCGGCTTAAGCAA 59.673 50.000 27.83 13.58 44.36 3.91
3109 3341 1.405821 AGTCGTTGCCCTATCTTCTCG 59.594 52.381 0.00 0.00 0.00 4.04
3144 3376 4.943705 GCCAGAAGTAATTTCTCATGTGGA 59.056 41.667 4.68 0.00 44.34 4.02
3214 3446 3.057337 ACAGCGGTGTGGGAGTAC 58.943 61.111 21.19 0.00 34.75 2.73
3268 3500 2.905085 TGGCATGAAATCAAACACCCAT 59.095 40.909 0.00 0.00 0.00 4.00
3298 3530 1.305930 CGTTGCCAAGGAAGTAGCCC 61.306 60.000 0.00 0.00 0.00 5.19
3361 3593 9.605275 GCTAGAGATGATATAATGGCAATACAA 57.395 33.333 0.00 0.00 0.00 2.41
3421 3653 0.312416 CATCCCACCTCTCGTCGATC 59.688 60.000 0.00 0.00 0.00 3.69
3427 3659 0.958091 CTAGCTCATCCCACCTCTCG 59.042 60.000 0.00 0.00 0.00 4.04
3433 3665 0.179000 CACCCACTAGCTCATCCCAC 59.821 60.000 0.00 0.00 0.00 4.61
3451 3683 3.107402 ACTATCTTCAGAGGCACCTCA 57.893 47.619 18.67 0.00 44.99 3.86
3532 3764 4.563580 CCTCCATTATGATAACTCCACCGG 60.564 50.000 0.00 0.00 0.00 5.28
3533 3765 4.283467 TCCTCCATTATGATAACTCCACCG 59.717 45.833 0.00 0.00 0.00 4.94
3559 3791 5.073691 AGCATAGAGTAAATTACCTGGCCAT 59.926 40.000 5.51 0.00 0.00 4.40
3583 3815 9.197306 TGCTCACTAAAATAATCCTAGACACTA 57.803 33.333 0.00 0.00 0.00 2.74
3613 3845 3.749609 GCAAAAGAAGATTTGGCAGCAAT 59.250 39.130 0.00 0.00 39.99 3.56
3710 3971 4.583073 ACAAACAGGACATGGTAAACTTCC 59.417 41.667 0.00 0.00 0.00 3.46
3714 3975 6.380095 TGTTACAAACAGGACATGGTAAAC 57.620 37.500 0.00 0.00 36.25 2.01
3717 3978 6.121776 AGATGTTACAAACAGGACATGGTA 57.878 37.500 0.00 0.00 45.95 3.25
3718 3979 4.985538 AGATGTTACAAACAGGACATGGT 58.014 39.130 0.00 0.00 45.95 3.55
3720 3981 9.398170 CTAAAAAGATGTTACAAACAGGACATG 57.602 33.333 0.00 0.00 45.95 3.21
3721 3982 8.082242 GCTAAAAAGATGTTACAAACAGGACAT 58.918 33.333 0.00 0.00 45.95 3.06
3722 3983 7.284489 AGCTAAAAAGATGTTACAAACAGGACA 59.716 33.333 0.00 0.00 45.95 4.02
3723 3984 7.591426 CAGCTAAAAAGATGTTACAAACAGGAC 59.409 37.037 0.00 0.00 45.95 3.85
3724 3985 7.284489 ACAGCTAAAAAGATGTTACAAACAGGA 59.716 33.333 0.00 0.00 45.95 3.86
3725 3986 7.425606 ACAGCTAAAAAGATGTTACAAACAGG 58.574 34.615 0.00 0.00 45.95 4.00
3726 3987 9.944663 TTACAGCTAAAAAGATGTTACAAACAG 57.055 29.630 1.24 0.00 45.95 3.16
3814 4079 4.775236 AGTAGCAGATCAAATCAAGGGTC 58.225 43.478 0.00 0.00 0.00 4.46
3824 4089 5.095145 AGCAATCAGAAGTAGCAGATCAA 57.905 39.130 0.00 0.00 0.00 2.57
3827 4092 4.197750 CCAAGCAATCAGAAGTAGCAGAT 58.802 43.478 0.00 0.00 0.00 2.90
3829 4094 2.681848 CCCAAGCAATCAGAAGTAGCAG 59.318 50.000 0.00 0.00 0.00 4.24
3832 4097 3.634397 TCCCCAAGCAATCAGAAGTAG 57.366 47.619 0.00 0.00 0.00 2.57
3833 4098 4.202567 ACTTTCCCCAAGCAATCAGAAGTA 60.203 41.667 0.00 0.00 35.65 2.24
3834 4099 2.978156 TTCCCCAAGCAATCAGAAGT 57.022 45.000 0.00 0.00 0.00 3.01
3852 4117 4.704057 GGCATCCAAAGAGATCAGAACTTT 59.296 41.667 0.00 0.00 34.77 2.66
3861 4126 3.744940 TTTCCAGGCATCCAAAGAGAT 57.255 42.857 0.00 0.00 0.00 2.75
3862 4127 3.624777 GATTTCCAGGCATCCAAAGAGA 58.375 45.455 0.00 0.00 0.00 3.10
3863 4128 2.692041 GGATTTCCAGGCATCCAAAGAG 59.308 50.000 11.23 0.00 39.16 2.85
3865 4130 2.743553 AGGATTTCCAGGCATCCAAAG 58.256 47.619 16.46 0.00 41.51 2.77
3866 4131 2.925966 AGGATTTCCAGGCATCCAAA 57.074 45.000 16.46 0.00 41.51 3.28
3869 4134 3.515602 ACATAGGATTTCCAGGCATCC 57.484 47.619 8.84 8.84 39.59 3.51
3870 4135 6.479884 AGAATACATAGGATTTCCAGGCATC 58.520 40.000 0.00 0.00 38.89 3.91
3871 4136 6.460103 AGAATACATAGGATTTCCAGGCAT 57.540 37.500 0.00 0.00 38.89 4.40
3872 4137 5.912149 AGAATACATAGGATTTCCAGGCA 57.088 39.130 0.00 0.00 38.89 4.75
3873 4138 7.224297 TGTTAGAATACATAGGATTTCCAGGC 58.776 38.462 0.00 0.00 38.89 4.85
3882 4252 9.987272 CATGTGAGAATGTTAGAATACATAGGA 57.013 33.333 0.00 0.00 37.76 2.94
4081 4451 0.176449 CAGCGATGGACCATGTCTGA 59.824 55.000 12.99 0.00 32.47 3.27
4126 4496 1.191489 TGAGCGTTGATGGGTCCTCA 61.191 55.000 0.00 0.00 0.00 3.86
4138 4508 3.400255 CATGGAGATCATCATGAGCGTT 58.600 45.455 17.95 0.00 42.25 4.84
4224 4596 9.249457 GTAAATTCTTTTTCTCAAGAAACCCAG 57.751 33.333 4.71 2.85 44.18 4.45
4237 4609 6.288294 ACCCTTGGCAAGTAAATTCTTTTTC 58.712 36.000 24.57 0.00 0.00 2.29
4258 4630 3.318275 GTGGACTCCTTTTTCTTGAACCC 59.682 47.826 0.00 0.00 0.00 4.11
4261 4633 4.855340 ACTGTGGACTCCTTTTTCTTGAA 58.145 39.130 0.00 0.00 0.00 2.69
4263 4635 4.925068 CAACTGTGGACTCCTTTTTCTTG 58.075 43.478 0.00 0.00 0.00 3.02
4280 4655 6.481976 TGACAGAGTACAATTACAACCAACTG 59.518 38.462 0.00 0.00 0.00 3.16
4366 4741 9.840427 AACATATTATTCCGAAACTGAGTTTTG 57.160 29.630 16.61 16.61 35.77 2.44
4424 4835 7.118971 CCAAGGTGTCATTTCACAAAAGAAAAA 59.881 33.333 0.00 0.00 40.54 1.94
4425 4836 6.593382 CCAAGGTGTCATTTCACAAAAGAAAA 59.407 34.615 0.00 0.00 40.54 2.29
4426 4837 6.071108 TCCAAGGTGTCATTTCACAAAAGAAA 60.071 34.615 0.00 0.00 41.31 2.52
4427 4838 5.420421 TCCAAGGTGTCATTTCACAAAAGAA 59.580 36.000 0.00 0.00 39.76 2.52
4428 4839 4.952957 TCCAAGGTGTCATTTCACAAAAGA 59.047 37.500 0.00 0.00 39.76 2.52
4429 4840 5.261209 TCCAAGGTGTCATTTCACAAAAG 57.739 39.130 0.00 0.00 39.76 2.27
4430 4841 5.867903 ATCCAAGGTGTCATTTCACAAAA 57.132 34.783 0.00 0.00 39.76 2.44
4431 4842 6.068010 ACTATCCAAGGTGTCATTTCACAAA 58.932 36.000 0.00 0.00 39.76 2.83
4432 4843 5.630121 ACTATCCAAGGTGTCATTTCACAA 58.370 37.500 0.00 0.00 39.76 3.33
4433 4844 5.241403 ACTATCCAAGGTGTCATTTCACA 57.759 39.130 0.00 0.00 39.76 3.58
4434 4845 6.575162 AAACTATCCAAGGTGTCATTTCAC 57.425 37.500 0.00 0.00 37.57 3.18
4435 4846 9.967451 TTATAAACTATCCAAGGTGTCATTTCA 57.033 29.630 0.00 0.00 0.00 2.69
4437 4848 8.903820 GCTTATAAACTATCCAAGGTGTCATTT 58.096 33.333 0.00 0.00 0.00 2.32
4438 4849 8.275040 AGCTTATAAACTATCCAAGGTGTCATT 58.725 33.333 0.00 0.00 0.00 2.57
4439 4850 7.806180 AGCTTATAAACTATCCAAGGTGTCAT 58.194 34.615 0.00 0.00 0.00 3.06
4440 4851 7.195374 AGCTTATAAACTATCCAAGGTGTCA 57.805 36.000 0.00 0.00 0.00 3.58
4441 4852 8.507524 AAAGCTTATAAACTATCCAAGGTGTC 57.492 34.615 0.00 0.00 0.00 3.67
4442 4853 9.614792 CTAAAGCTTATAAACTATCCAAGGTGT 57.385 33.333 0.00 0.00 0.00 4.16
4443 4854 8.560374 GCTAAAGCTTATAAACTATCCAAGGTG 58.440 37.037 0.00 0.00 38.21 4.00
4444 4855 8.272173 TGCTAAAGCTTATAAACTATCCAAGGT 58.728 33.333 0.00 0.00 42.66 3.50
4457 4868 7.254421 CGTCATGATTGTGTGCTAAAGCTTATA 60.254 37.037 0.00 0.00 42.66 0.98
4458 4869 6.457392 CGTCATGATTGTGTGCTAAAGCTTAT 60.457 38.462 0.00 0.00 42.66 1.73
4459 4870 5.163864 CGTCATGATTGTGTGCTAAAGCTTA 60.164 40.000 0.00 0.00 42.66 3.09
4582 4994 4.808414 ATCATCAAGGTCTCGTCTCAAA 57.192 40.909 0.00 0.00 0.00 2.69
4585 4997 7.778470 AAAATTATCATCAAGGTCTCGTCTC 57.222 36.000 0.00 0.00 0.00 3.36
4586 4998 9.838339 ATTAAAATTATCATCAAGGTCTCGTCT 57.162 29.630 0.00 0.00 0.00 4.18
4717 5210 8.626526 GGAACACTTCAAGGAATTACACTTAAA 58.373 33.333 0.00 0.00 0.00 1.52
4718 5211 7.229907 GGGAACACTTCAAGGAATTACACTTAA 59.770 37.037 0.00 0.00 0.00 1.85
4719 5212 6.713450 GGGAACACTTCAAGGAATTACACTTA 59.287 38.462 0.00 0.00 0.00 2.24
4721 5214 5.070685 GGGAACACTTCAAGGAATTACACT 58.929 41.667 0.00 0.00 0.00 3.55
4722 5215 5.070685 AGGGAACACTTCAAGGAATTACAC 58.929 41.667 0.00 0.00 0.00 2.90
4730 5223 2.230660 GGTCAAGGGAACACTTCAAGG 58.769 52.381 0.00 0.00 0.00 3.61
4847 5446 9.859427 TCAATCAATCAATCAATCAAGTAAACC 57.141 29.630 0.00 0.00 0.00 3.27
4863 5462 7.324935 CAATTTGATGTCCCTTCAATCAATCA 58.675 34.615 0.00 0.00 33.37 2.57
4864 5463 6.257193 GCAATTTGATGTCCCTTCAATCAATC 59.743 38.462 0.00 0.00 33.37 2.67
4865 5464 6.110707 GCAATTTGATGTCCCTTCAATCAAT 58.889 36.000 0.00 0.00 33.37 2.57
4909 5510 1.674980 TCCAGATTGCGTGCATGCA 60.675 52.632 29.30 29.30 44.61 3.96
4934 5535 8.352201 GTTGTTTATGATGATGCAGCCTTAATA 58.648 33.333 0.00 0.00 0.00 0.98
4943 5544 7.446001 TGTACTTGTTGTTTATGATGATGCA 57.554 32.000 0.00 0.00 0.00 3.96
5027 5633 9.804758 GAGCAAGCCGACTTATAAGTTATATAT 57.195 33.333 18.96 2.85 39.88 0.86
5028 5634 8.799367 TGAGCAAGCCGACTTATAAGTTATATA 58.201 33.333 18.96 0.00 39.88 0.86
5029 5635 7.667557 TGAGCAAGCCGACTTATAAGTTATAT 58.332 34.615 18.96 4.37 39.88 0.86
5030 5636 7.046292 TGAGCAAGCCGACTTATAAGTTATA 57.954 36.000 18.96 0.00 39.88 0.98
5031 5637 5.914033 TGAGCAAGCCGACTTATAAGTTAT 58.086 37.500 18.96 0.17 39.88 1.89
5032 5638 5.333299 TGAGCAAGCCGACTTATAAGTTA 57.667 39.130 18.96 0.00 39.88 2.24
5033 5639 4.202245 TGAGCAAGCCGACTTATAAGTT 57.798 40.909 18.96 0.63 39.88 2.66
5034 5640 3.887621 TGAGCAAGCCGACTTATAAGT 57.112 42.857 18.05 18.05 43.16 2.24
5035 5641 3.309954 GGTTGAGCAAGCCGACTTATAAG 59.690 47.826 11.05 11.05 33.74 1.73
5036 5642 3.267483 GGTTGAGCAAGCCGACTTATAA 58.733 45.455 1.13 0.00 33.74 0.98
5037 5643 2.235155 TGGTTGAGCAAGCCGACTTATA 59.765 45.455 9.61 0.00 37.97 0.98
5038 5644 1.003118 TGGTTGAGCAAGCCGACTTAT 59.997 47.619 9.61 0.00 37.97 1.73
5039 5645 0.394938 TGGTTGAGCAAGCCGACTTA 59.605 50.000 9.61 0.00 37.97 2.24
5040 5646 0.250901 ATGGTTGAGCAAGCCGACTT 60.251 50.000 9.61 0.00 37.97 3.01
5041 5647 0.613260 TATGGTTGAGCAAGCCGACT 59.387 50.000 9.61 0.00 37.97 4.18
5042 5648 1.448985 TTATGGTTGAGCAAGCCGAC 58.551 50.000 9.61 0.00 37.97 4.79
5043 5649 2.192664 TTTATGGTTGAGCAAGCCGA 57.807 45.000 9.61 0.00 37.97 5.54
5044 5650 2.415893 CCTTTTATGGTTGAGCAAGCCG 60.416 50.000 9.61 0.00 37.97 5.52
5045 5651 2.675032 GCCTTTTATGGTTGAGCAAGCC 60.675 50.000 9.61 3.16 37.97 4.35
5046 5652 2.029110 TGCCTTTTATGGTTGAGCAAGC 60.029 45.455 5.52 5.52 39.12 4.01
5047 5653 3.507233 TCTGCCTTTTATGGTTGAGCAAG 59.493 43.478 0.00 0.00 0.00 4.01
5048 5654 3.495331 TCTGCCTTTTATGGTTGAGCAA 58.505 40.909 0.00 0.00 0.00 3.91
5049 5655 3.084039 CTCTGCCTTTTATGGTTGAGCA 58.916 45.455 0.00 0.00 0.00 4.26
5050 5656 3.084786 ACTCTGCCTTTTATGGTTGAGC 58.915 45.455 0.00 0.00 34.48 4.26
5051 5657 5.491982 ACTACTCTGCCTTTTATGGTTGAG 58.508 41.667 0.00 0.00 35.94 3.02
5052 5658 5.499004 ACTACTCTGCCTTTTATGGTTGA 57.501 39.130 0.00 0.00 0.00 3.18
5053 5659 6.575162 AAACTACTCTGCCTTTTATGGTTG 57.425 37.500 0.00 0.00 0.00 3.77
5054 5660 6.775629 TCAAAACTACTCTGCCTTTTATGGTT 59.224 34.615 0.00 0.00 0.00 3.67
5055 5661 6.303839 TCAAAACTACTCTGCCTTTTATGGT 58.696 36.000 0.00 0.00 0.00 3.55
5056 5662 6.817765 TCAAAACTACTCTGCCTTTTATGG 57.182 37.500 0.00 0.00 0.00 2.74
5057 5663 7.084486 GGTTCAAAACTACTCTGCCTTTTATG 58.916 38.462 0.00 0.00 0.00 1.90
5058 5664 6.775629 TGGTTCAAAACTACTCTGCCTTTTAT 59.224 34.615 0.00 0.00 0.00 1.40
5059 5665 6.123651 TGGTTCAAAACTACTCTGCCTTTTA 58.876 36.000 0.00 0.00 0.00 1.52
5060 5666 4.953579 TGGTTCAAAACTACTCTGCCTTTT 59.046 37.500 0.00 0.00 0.00 2.27
5061 5667 4.532834 TGGTTCAAAACTACTCTGCCTTT 58.467 39.130 0.00 0.00 0.00 3.11
5062 5668 4.137543 CTGGTTCAAAACTACTCTGCCTT 58.862 43.478 0.00 0.00 0.00 4.35
5063 5669 3.391296 TCTGGTTCAAAACTACTCTGCCT 59.609 43.478 0.00 0.00 0.00 4.75
5064 5670 3.740115 TCTGGTTCAAAACTACTCTGCC 58.260 45.455 0.00 0.00 0.00 4.85
5065 5671 4.381411 ACTCTGGTTCAAAACTACTCTGC 58.619 43.478 0.00 0.00 0.00 4.26
5066 5672 6.513180 TGTACTCTGGTTCAAAACTACTCTG 58.487 40.000 0.00 0.00 0.00 3.35
5067 5673 6.726490 TGTACTCTGGTTCAAAACTACTCT 57.274 37.500 0.00 0.00 0.00 3.24
5068 5674 7.781548 TTTGTACTCTGGTTCAAAACTACTC 57.218 36.000 0.00 0.00 38.89 2.59
5069 5675 7.990886 TGATTTGTACTCTGGTTCAAAACTACT 59.009 33.333 0.00 0.00 42.70 2.57
5070 5676 8.149973 TGATTTGTACTCTGGTTCAAAACTAC 57.850 34.615 0.00 0.00 42.70 2.73
5071 5677 8.208224 TCTGATTTGTACTCTGGTTCAAAACTA 58.792 33.333 0.00 0.00 42.70 2.24
5072 5678 7.054124 TCTGATTTGTACTCTGGTTCAAAACT 58.946 34.615 0.00 0.00 42.70 2.66
5073 5679 7.259290 TCTGATTTGTACTCTGGTTCAAAAC 57.741 36.000 0.00 4.20 42.70 2.43
5074 5680 6.486657 CCTCTGATTTGTACTCTGGTTCAAAA 59.513 38.462 0.00 0.00 42.70 2.44
5075 5681 5.997746 CCTCTGATTTGTACTCTGGTTCAAA 59.002 40.000 0.00 4.10 43.25 2.69
5076 5682 5.071788 ACCTCTGATTTGTACTCTGGTTCAA 59.928 40.000 0.00 0.00 32.37 2.69
5077 5683 4.593206 ACCTCTGATTTGTACTCTGGTTCA 59.407 41.667 0.00 0.00 0.00 3.18
5078 5684 5.153950 ACCTCTGATTTGTACTCTGGTTC 57.846 43.478 0.00 0.00 0.00 3.62
5079 5685 6.017192 TCTACCTCTGATTTGTACTCTGGTT 58.983 40.000 0.00 0.00 0.00 3.67
5080 5686 5.580998 TCTACCTCTGATTTGTACTCTGGT 58.419 41.667 0.00 0.00 0.00 4.00
5081 5687 5.654650 ACTCTACCTCTGATTTGTACTCTGG 59.345 44.000 0.00 0.00 0.00 3.86
5082 5688 6.183360 GGACTCTACCTCTGATTTGTACTCTG 60.183 46.154 0.00 0.00 0.00 3.35
5083 5689 5.889289 GGACTCTACCTCTGATTTGTACTCT 59.111 44.000 0.00 0.00 0.00 3.24
5084 5690 5.220892 CGGACTCTACCTCTGATTTGTACTC 60.221 48.000 0.00 0.00 0.00 2.59
5085 5691 4.641094 CGGACTCTACCTCTGATTTGTACT 59.359 45.833 0.00 0.00 0.00 2.73
5086 5692 4.202030 CCGGACTCTACCTCTGATTTGTAC 60.202 50.000 0.00 0.00 0.00 2.90
5087 5693 3.952323 CCGGACTCTACCTCTGATTTGTA 59.048 47.826 0.00 0.00 0.00 2.41
5088 5694 2.761208 CCGGACTCTACCTCTGATTTGT 59.239 50.000 0.00 0.00 0.00 2.83
5089 5695 2.101582 CCCGGACTCTACCTCTGATTTG 59.898 54.545 0.73 0.00 0.00 2.32
5090 5696 2.389715 CCCGGACTCTACCTCTGATTT 58.610 52.381 0.73 0.00 0.00 2.17
5091 5697 2.030045 GCCCGGACTCTACCTCTGATT 61.030 57.143 0.73 0.00 0.00 2.57
5092 5698 0.468400 GCCCGGACTCTACCTCTGAT 60.468 60.000 0.73 0.00 0.00 2.90
5093 5699 1.076923 GCCCGGACTCTACCTCTGA 60.077 63.158 0.73 0.00 0.00 3.27
5094 5700 2.128507 GGCCCGGACTCTACCTCTG 61.129 68.421 0.73 0.00 0.00 3.35
5095 5701 2.279408 GGCCCGGACTCTACCTCT 59.721 66.667 0.73 0.00 0.00 3.69
5096 5702 2.838693 GGGCCCGGACTCTACCTC 60.839 72.222 5.69 0.00 0.00 3.85
5097 5703 2.547123 ATTGGGCCCGGACTCTACCT 62.547 60.000 19.37 0.00 0.00 3.08
5098 5704 1.632965 AATTGGGCCCGGACTCTACC 61.633 60.000 19.37 0.00 0.00 3.18
5099 5705 0.179054 GAATTGGGCCCGGACTCTAC 60.179 60.000 19.37 0.00 0.00 2.59
5100 5706 0.619255 TGAATTGGGCCCGGACTCTA 60.619 55.000 19.37 0.00 0.00 2.43
5101 5707 1.915078 CTGAATTGGGCCCGGACTCT 61.915 60.000 19.37 0.00 0.00 3.24
5102 5708 1.452108 CTGAATTGGGCCCGGACTC 60.452 63.158 19.37 11.59 0.00 3.36
5103 5709 2.677228 CTGAATTGGGCCCGGACT 59.323 61.111 19.37 0.19 0.00 3.85
5104 5710 3.140814 GCTGAATTGGGCCCGGAC 61.141 66.667 19.37 9.22 0.00 4.79
5105 5711 4.440829 GGCTGAATTGGGCCCGGA 62.441 66.667 19.37 9.03 42.30 5.14
5110 5716 2.293170 GACTCTTAGGCTGAATTGGGC 58.707 52.381 0.00 0.00 0.00 5.36
5111 5717 2.239654 TGGACTCTTAGGCTGAATTGGG 59.760 50.000 0.00 0.00 0.00 4.12
5112 5718 3.539604 CTGGACTCTTAGGCTGAATTGG 58.460 50.000 0.00 0.00 0.00 3.16
5113 5719 3.054802 ACCTGGACTCTTAGGCTGAATTG 60.055 47.826 0.00 0.00 37.61 2.32
5114 5720 3.054802 CACCTGGACTCTTAGGCTGAATT 60.055 47.826 0.00 0.00 37.61 2.17
5115 5721 2.503356 CACCTGGACTCTTAGGCTGAAT 59.497 50.000 0.00 0.00 37.61 2.57
5116 5722 1.902508 CACCTGGACTCTTAGGCTGAA 59.097 52.381 0.00 0.00 37.61 3.02
5117 5723 1.203187 ACACCTGGACTCTTAGGCTGA 60.203 52.381 0.00 0.00 37.61 4.26
5118 5724 1.270907 ACACCTGGACTCTTAGGCTG 58.729 55.000 0.00 0.00 37.61 4.85
5119 5725 2.921834 TACACCTGGACTCTTAGGCT 57.078 50.000 0.00 0.00 37.61 4.58
5120 5726 4.489306 AATTACACCTGGACTCTTAGGC 57.511 45.455 0.00 0.00 37.61 3.93
5121 5727 9.712305 CATTATAATTACACCTGGACTCTTAGG 57.288 37.037 0.00 0.00 40.01 2.69
5122 5728 9.712305 CCATTATAATTACACCTGGACTCTTAG 57.288 37.037 0.00 0.00 0.00 2.18
5123 5729 9.442062 TCCATTATAATTACACCTGGACTCTTA 57.558 33.333 0.00 0.00 0.00 2.10
5124 5730 8.331931 TCCATTATAATTACACCTGGACTCTT 57.668 34.615 0.00 0.00 0.00 2.85
5125 5731 7.931015 TCCATTATAATTACACCTGGACTCT 57.069 36.000 0.00 0.00 0.00 3.24
5126 5732 7.444487 GGTTCCATTATAATTACACCTGGACTC 59.556 40.741 0.00 0.00 31.36 3.36
5127 5733 7.128883 AGGTTCCATTATAATTACACCTGGACT 59.871 37.037 14.50 3.63 31.98 3.85
5128 5734 7.287810 AGGTTCCATTATAATTACACCTGGAC 58.712 38.462 14.50 6.04 31.98 4.02
5129 5735 7.460214 AGGTTCCATTATAATTACACCTGGA 57.540 36.000 14.50 7.68 31.98 3.86
5130 5736 7.559897 ACAAGGTTCCATTATAATTACACCTGG 59.440 37.037 15.43 14.97 33.56 4.45
5131 5737 8.405531 CACAAGGTTCCATTATAATTACACCTG 58.594 37.037 15.43 12.73 33.56 4.00
5132 5738 8.333235 TCACAAGGTTCCATTATAATTACACCT 58.667 33.333 11.24 11.24 34.77 4.00
5133 5739 8.514330 TCACAAGGTTCCATTATAATTACACC 57.486 34.615 0.00 2.34 0.00 4.16
5134 5740 9.950680 CATCACAAGGTTCCATTATAATTACAC 57.049 33.333 0.00 0.00 0.00 2.90
5135 5741 9.913310 TCATCACAAGGTTCCATTATAATTACA 57.087 29.630 0.00 0.00 0.00 2.41
5137 5743 9.066892 GCTCATCACAAGGTTCCATTATAATTA 57.933 33.333 0.00 0.00 0.00 1.40
5138 5744 7.781693 AGCTCATCACAAGGTTCCATTATAATT 59.218 33.333 0.00 0.00 0.00 1.40
5139 5745 7.293073 AGCTCATCACAAGGTTCCATTATAAT 58.707 34.615 0.00 0.00 0.00 1.28
5140 5746 6.662755 AGCTCATCACAAGGTTCCATTATAA 58.337 36.000 0.00 0.00 0.00 0.98
5141 5747 6.126796 TGAGCTCATCACAAGGTTCCATTATA 60.127 38.462 13.74 0.00 31.12 0.98
5142 5748 5.121380 AGCTCATCACAAGGTTCCATTAT 57.879 39.130 0.00 0.00 0.00 1.28
5143 5749 4.019411 TGAGCTCATCACAAGGTTCCATTA 60.019 41.667 13.74 0.00 31.12 1.90
5144 5750 3.245016 TGAGCTCATCACAAGGTTCCATT 60.245 43.478 13.74 0.00 31.12 3.16
5145 5751 2.306805 TGAGCTCATCACAAGGTTCCAT 59.693 45.455 13.74 0.00 31.12 3.41
5146 5752 1.699083 TGAGCTCATCACAAGGTTCCA 59.301 47.619 13.74 0.00 31.12 3.53
5147 5753 2.479566 TGAGCTCATCACAAGGTTCC 57.520 50.000 13.74 0.00 31.12 3.62
5156 5762 5.277974 CCTTTTTCTTTTCGTGAGCTCATCA 60.278 40.000 21.47 6.58 34.79 3.07
5157 5763 5.149977 CCTTTTTCTTTTCGTGAGCTCATC 58.850 41.667 21.47 12.53 0.00 2.92
5158 5764 4.022849 CCCTTTTTCTTTTCGTGAGCTCAT 60.023 41.667 21.47 0.00 0.00 2.90
5159 5765 3.315191 CCCTTTTTCTTTTCGTGAGCTCA 59.685 43.478 13.74 13.74 0.00 4.26
5160 5766 3.304726 CCCCTTTTTCTTTTCGTGAGCTC 60.305 47.826 6.82 6.82 0.00 4.09
5161 5767 2.623416 CCCCTTTTTCTTTTCGTGAGCT 59.377 45.455 0.00 0.00 0.00 4.09
5162 5768 2.288213 CCCCCTTTTTCTTTTCGTGAGC 60.288 50.000 0.00 0.00 0.00 4.26
5163 5769 2.288213 GCCCCCTTTTTCTTTTCGTGAG 60.288 50.000 0.00 0.00 0.00 3.51
5164 5770 1.684450 GCCCCCTTTTTCTTTTCGTGA 59.316 47.619 0.00 0.00 0.00 4.35
5165 5771 1.410882 TGCCCCCTTTTTCTTTTCGTG 59.589 47.619 0.00 0.00 0.00 4.35
5166 5772 1.783071 TGCCCCCTTTTTCTTTTCGT 58.217 45.000 0.00 0.00 0.00 3.85
5167 5773 2.900716 TTGCCCCCTTTTTCTTTTCG 57.099 45.000 0.00 0.00 0.00 3.46
5168 5774 4.261572 GCAATTTGCCCCCTTTTTCTTTTC 60.262 41.667 10.34 0.00 37.42 2.29
5169 5775 3.636300 GCAATTTGCCCCCTTTTTCTTTT 59.364 39.130 10.34 0.00 37.42 2.27
5170 5776 3.221771 GCAATTTGCCCCCTTTTTCTTT 58.778 40.909 10.34 0.00 37.42 2.52
5171 5777 2.810032 CGCAATTTGCCCCCTTTTTCTT 60.810 45.455 15.45 0.00 41.12 2.52
5172 5778 1.270785 CGCAATTTGCCCCCTTTTTCT 60.271 47.619 15.45 0.00 41.12 2.52
5173 5779 1.155889 CGCAATTTGCCCCCTTTTTC 58.844 50.000 15.45 0.00 41.12 2.29
5174 5780 0.761802 TCGCAATTTGCCCCCTTTTT 59.238 45.000 15.45 0.00 41.12 1.94
5175 5781 0.983467 ATCGCAATTTGCCCCCTTTT 59.017 45.000 15.45 0.00 41.12 2.27
5176 5782 0.536724 GATCGCAATTTGCCCCCTTT 59.463 50.000 15.45 0.00 41.12 3.11
5177 5783 1.666209 CGATCGCAATTTGCCCCCTT 61.666 55.000 15.45 0.00 41.12 3.95
5178 5784 2.120909 CGATCGCAATTTGCCCCCT 61.121 57.895 15.45 0.00 41.12 4.79
5179 5785 2.412937 CGATCGCAATTTGCCCCC 59.587 61.111 15.45 4.03 41.12 5.40
5180 5786 1.662438 TTCCGATCGCAATTTGCCCC 61.662 55.000 15.45 4.36 41.12 5.80
5181 5787 0.172352 TTTCCGATCGCAATTTGCCC 59.828 50.000 15.45 4.69 41.12 5.36
5182 5788 1.989430 TTTTCCGATCGCAATTTGCC 58.011 45.000 15.45 1.21 41.12 4.52
5199 5805 3.968773 TGGCTGCCTTGGCTTTTT 58.031 50.000 21.03 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.