Multiple sequence alignment - TraesCS4B01G093200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G093200 chr4B 100.000 8364 0 0 1 8364 95668922 95677285 0.000000e+00 15446.0
1 TraesCS4B01G093200 chr4B 97.143 35 1 0 6682 6716 525844368 525844334 9.070000e-05 60.2
2 TraesCS4B01G093200 chr4D 96.193 5411 185 14 965 6369 65120761 65126156 0.000000e+00 8831.0
3 TraesCS4B01G093200 chr4D 96.752 1878 34 8 6453 8320 65126153 65128013 0.000000e+00 3105.0
4 TraesCS4B01G093200 chr4D 80.000 175 25 7 766 936 65120398 65120566 4.100000e-23 121.0
5 TraesCS4B01G093200 chr4A 94.528 4276 170 25 965 5230 531081846 531086067 0.000000e+00 6541.0
6 TraesCS4B01G093200 chr4A 91.394 918 57 13 5225 6129 531087194 531088102 0.000000e+00 1238.0
7 TraesCS4B01G093200 chr4A 77.473 2042 427 26 2144 4170 626323108 626321085 0.000000e+00 1192.0
8 TraesCS4B01G093200 chr4A 92.013 313 24 1 263 575 196612676 196612365 9.970000e-119 438.0
9 TraesCS4B01G093200 chr4A 87.368 95 9 2 766 860 531077432 531077523 1.150000e-18 106.0
10 TraesCS4B01G093200 chr4A 87.692 65 8 0 6615 6679 60654156 60654220 9.000000e-10 76.8
11 TraesCS4B01G093200 chr4A 100.000 39 0 0 6679 6717 554704106 554704144 1.160000e-08 73.1
12 TraesCS4B01G093200 chr5B 77.516 2077 430 29 2144 4203 683142884 683140828 0.000000e+00 1214.0
13 TraesCS4B01G093200 chr2B 93.357 572 8 4 1 572 364960854 364961395 0.000000e+00 819.0
14 TraesCS4B01G093200 chr2B 85.047 107 16 0 7161 7267 383277080 383277186 8.880000e-20 110.0
15 TraesCS4B01G093200 chr2B 91.111 45 4 0 6679 6723 462889306 462889262 2.520000e-05 62.1
16 TraesCS4B01G093200 chr3B 92.832 572 9 5 1 572 684514577 684514038 0.000000e+00 800.0
17 TraesCS4B01G093200 chr3B 95.918 49 2 0 6663 6711 181317775 181317727 6.960000e-11 80.5
18 TraesCS4B01G093200 chr1B 92.820 571 10 4 1 571 622621705 622621166 0.000000e+00 798.0
19 TraesCS4B01G093200 chr7D 91.259 572 20 4 1 572 85599416 85598875 0.000000e+00 752.0
20 TraesCS4B01G093200 chr7D 90.278 72 6 1 223 293 85599163 85599092 8.940000e-15 93.5
21 TraesCS4B01G093200 chr7D 79.130 115 9 6 6615 6716 560910706 560910818 1.950000e-06 65.8
22 TraesCS4B01G093200 chr7D 84.127 63 10 0 6617 6679 534359222 534359284 2.520000e-05 62.1
23 TraesCS4B01G093200 chr3D 86.213 573 50 14 1 573 568577466 568576923 2.010000e-165 593.0
24 TraesCS4B01G093200 chr3D 86.014 572 51 14 1 572 296430521 296431063 3.360000e-163 586.0
25 TraesCS4B01G093200 chr3D 91.803 61 5 0 6619 6679 420810457 420810517 1.500000e-12 86.1
26 TraesCS4B01G093200 chr3D 90.625 64 6 0 6616 6679 420810579 420810516 1.500000e-12 86.1
27 TraesCS4B01G093200 chr1D 85.397 541 50 6 1 541 321329651 321330162 1.240000e-147 534.0
28 TraesCS4B01G093200 chr1A 95.639 321 12 2 252 572 13251159 13250841 1.610000e-141 514.0
29 TraesCS4B01G093200 chr1A 95.556 315 12 2 252 566 9308117 9307805 3.480000e-138 503.0
30 TraesCS4B01G093200 chr1A 95.089 224 7 2 2 225 13251377 13251158 4.800000e-92 350.0
31 TraesCS4B01G093200 chr1A 94.643 224 7 2 2 225 9308334 9308116 8.040000e-90 342.0
32 TraesCS4B01G093200 chr2A 76.786 672 127 26 4616 5271 419651091 419650433 4.800000e-92 350.0
33 TraesCS4B01G093200 chr2A 84.545 110 17 0 7161 7270 419649512 419649403 8.880000e-20 110.0
34 TraesCS4B01G093200 chr2A 88.406 69 8 0 6611 6679 657517733 657517801 5.380000e-12 84.2
35 TraesCS4B01G093200 chr2A 87.719 57 7 0 6623 6679 58392344 58392288 5.420000e-07 67.6
36 TraesCS4B01G093200 chr2D 85.047 107 16 0 7161 7267 315417891 315417997 8.880000e-20 110.0
37 TraesCS4B01G093200 chr6A 92.424 66 5 0 6614 6679 539229956 539230021 2.490000e-15 95.3
38 TraesCS4B01G093200 chr7A 93.548 62 4 0 6618 6679 532464060 532464121 8.940000e-15 93.5
39 TraesCS4B01G093200 chr7B 88.732 71 7 1 221 291 615911995 615911926 1.500000e-12 86.1
40 TraesCS4B01G093200 chr7B 88.732 71 7 1 221 291 615918939 615918870 1.500000e-12 86.1
41 TraesCS4B01G093200 chr3A 96.000 50 2 0 6662 6711 137607678 137607629 1.930000e-11 82.4
42 TraesCS4B01G093200 chr5D 94.737 38 2 0 6679 6716 335230249 335230286 9.070000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G093200 chr4B 95668922 95677285 8363 False 15446.00 15446 100.000000 1 8364 1 chr4B.!!$F1 8363
1 TraesCS4B01G093200 chr4D 65120398 65128013 7615 False 4019.00 8831 90.981667 766 8320 3 chr4D.!!$F1 7554
2 TraesCS4B01G093200 chr4A 531081846 531088102 6256 False 3889.50 6541 92.961000 965 6129 2 chr4A.!!$F4 5164
3 TraesCS4B01G093200 chr4A 626321085 626323108 2023 True 1192.00 1192 77.473000 2144 4170 1 chr4A.!!$R2 2026
4 TraesCS4B01G093200 chr5B 683140828 683142884 2056 True 1214.00 1214 77.516000 2144 4203 1 chr5B.!!$R1 2059
5 TraesCS4B01G093200 chr2B 364960854 364961395 541 False 819.00 819 93.357000 1 572 1 chr2B.!!$F1 571
6 TraesCS4B01G093200 chr3B 684514038 684514577 539 True 800.00 800 92.832000 1 572 1 chr3B.!!$R2 571
7 TraesCS4B01G093200 chr1B 622621166 622621705 539 True 798.00 798 92.820000 1 571 1 chr1B.!!$R1 570
8 TraesCS4B01G093200 chr7D 85598875 85599416 541 True 422.75 752 90.768500 1 572 2 chr7D.!!$R1 571
9 TraesCS4B01G093200 chr3D 568576923 568577466 543 True 593.00 593 86.213000 1 573 1 chr3D.!!$R2 572
10 TraesCS4B01G093200 chr3D 296430521 296431063 542 False 586.00 586 86.014000 1 572 1 chr3D.!!$F1 571
11 TraesCS4B01G093200 chr1D 321329651 321330162 511 False 534.00 534 85.397000 1 541 1 chr1D.!!$F1 540
12 TraesCS4B01G093200 chr1A 13250841 13251377 536 True 432.00 514 95.364000 2 572 2 chr1A.!!$R2 570
13 TraesCS4B01G093200 chr1A 9307805 9308334 529 True 422.50 503 95.099500 2 566 2 chr1A.!!$R1 564
14 TraesCS4B01G093200 chr2A 419649403 419651091 1688 True 230.00 350 80.665500 4616 7270 2 chr2A.!!$R2 2654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 683 0.031721 CGTATTCTACCGGTGCCCTC 59.968 60.000 19.93 2.38 0.00 4.30 F
713 714 0.035056 AAATCCTCTTGGTCTGGCCG 60.035 55.000 0.00 0.00 41.21 6.13 F
746 747 0.106335 CCACCCATCTAGAGCAGCAG 59.894 60.000 0.00 0.00 0.00 4.24 F
749 750 0.249953 CCCATCTAGAGCAGCAGCAG 60.250 60.000 3.17 0.00 45.49 4.24 F
1384 1555 0.796312 TTTCAAGTCGATCAAGCCGC 59.204 50.000 0.00 0.00 0.00 6.53 F
1785 1956 1.071239 CAAGTTCAGCGTTGTCGACTG 60.071 52.381 17.92 6.25 40.07 3.51 F
1900 2071 2.297033 GGAGGTGTGTGCAATCAATTGT 59.703 45.455 5.13 0.00 39.88 2.71 F
3594 3771 1.219393 CAGCGTTTCCTCTCCTCCC 59.781 63.158 0.00 0.00 0.00 4.30 F
4352 4536 0.604243 ACACCGTATTTCGCCAGCAA 60.604 50.000 0.00 0.00 38.35 3.91 F
4781 4966 1.127567 AAGGCACCTGGAGTACTGCA 61.128 55.000 16.82 16.82 0.00 4.41 F
6341 7686 0.961019 TTGTCAAGCCAACATGCCTC 59.039 50.000 0.00 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2038 0.179029 ACACCTCCACGGGACAAAAG 60.179 55.000 0.00 0.00 36.97 2.27 R
1930 2101 1.271488 TGCACAATCATGAGCACTGGA 60.271 47.619 0.09 0.00 46.18 3.86 R
2480 2651 3.308401 TGCCATAGCTCAGAGTTATCCA 58.692 45.455 3.86 2.74 40.80 3.41 R
2733 2904 7.040823 ACAAGCTCATAAAAATAGCTATCTGCC 60.041 37.037 6.72 0.00 45.61 4.85 R
3105 3276 5.221126 GCAAATTCTTGTGAGGTTGAGACTT 60.221 40.000 0.00 0.00 34.79 3.01 R
3400 3577 0.178995 TGCAGGTTCATCAAGCCACA 60.179 50.000 0.00 0.00 0.00 4.17 R
3872 4049 1.340405 GCAATGCTCCTTCCTGGAAGA 60.340 52.381 32.80 19.32 45.63 2.87 R
5341 6682 1.369321 GGCTCTCCTATCCTTGGCG 59.631 63.158 0.00 0.00 0.00 5.69 R
5642 6986 1.486211 ATCCTCAGGAAGGTGGTACG 58.514 55.000 0.00 0.00 46.32 3.67 R
6376 7721 0.178981 AGGACAGCACAAATGGCAGT 60.179 50.000 0.00 0.00 33.42 4.40 R
7627 8993 0.463620 TGTTTTCAGTGGGGCTTTGC 59.536 50.000 0.00 0.00 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 252 9.981460 AAAGAAAGTAGATATGATTTGTTCCCT 57.019 29.630 0.00 0.00 0.00 4.20
252 253 8.970859 AGAAAGTAGATATGATTTGTTCCCTG 57.029 34.615 0.00 0.00 0.00 4.45
253 254 8.552296 AGAAAGTAGATATGATTTGTTCCCTGT 58.448 33.333 0.00 0.00 0.00 4.00
254 255 9.178758 GAAAGTAGATATGATTTGTTCCCTGTT 57.821 33.333 0.00 0.00 0.00 3.16
389 390 7.895759 ACAGTGTCAAATTGTAAATTAGCCAT 58.104 30.769 0.00 0.00 0.00 4.40
573 574 2.363359 GGCAAATGATCCAATCTCCCAC 59.637 50.000 0.00 0.00 0.00 4.61
574 575 3.294214 GCAAATGATCCAATCTCCCACT 58.706 45.455 0.00 0.00 0.00 4.00
575 576 3.703052 GCAAATGATCCAATCTCCCACTT 59.297 43.478 0.00 0.00 0.00 3.16
576 577 4.889409 GCAAATGATCCAATCTCCCACTTA 59.111 41.667 0.00 0.00 0.00 2.24
577 578 5.009410 GCAAATGATCCAATCTCCCACTTAG 59.991 44.000 0.00 0.00 0.00 2.18
578 579 4.989875 ATGATCCAATCTCCCACTTAGG 57.010 45.455 0.00 0.00 37.03 2.69
579 580 4.007581 TGATCCAATCTCCCACTTAGGA 57.992 45.455 0.00 0.00 41.22 2.94
587 588 2.998949 CCACTTAGGAGGTGGCCC 59.001 66.667 0.00 0.00 45.97 5.80
588 589 2.680370 CCACTTAGGAGGTGGCCCC 61.680 68.421 0.00 0.03 45.97 5.80
589 590 2.286197 ACTTAGGAGGTGGCCCCC 60.286 66.667 0.00 0.00 0.00 5.40
590 591 3.480133 CTTAGGAGGTGGCCCCCG 61.480 72.222 0.00 0.00 0.00 5.73
603 604 4.692475 CCCCGCCGGTTTCGTTCT 62.692 66.667 1.90 0.00 33.95 3.01
604 605 3.116531 CCCGCCGGTTTCGTTCTC 61.117 66.667 1.90 0.00 33.95 2.87
605 606 3.475774 CCGCCGGTTTCGTTCTCG 61.476 66.667 1.90 0.00 38.55 4.04
606 607 2.429571 CGCCGGTTTCGTTCTCGA 60.430 61.111 1.90 0.00 44.66 4.04
607 608 2.713894 CGCCGGTTTCGTTCTCGAC 61.714 63.158 1.90 0.00 46.03 4.20
608 609 1.662446 GCCGGTTTCGTTCTCGACA 60.662 57.895 1.90 0.00 46.03 4.35
609 610 1.615107 GCCGGTTTCGTTCTCGACAG 61.615 60.000 1.90 0.00 46.03 3.51
610 611 1.615107 CCGGTTTCGTTCTCGACAGC 61.615 60.000 0.00 0.00 46.03 4.40
611 612 1.615107 CGGTTTCGTTCTCGACAGCC 61.615 60.000 0.00 0.00 46.03 4.85
612 613 1.289800 GGTTTCGTTCTCGACAGCCC 61.290 60.000 0.00 0.00 46.03 5.19
613 614 0.599204 GTTTCGTTCTCGACAGCCCA 60.599 55.000 0.00 0.00 46.03 5.36
614 615 0.105224 TTTCGTTCTCGACAGCCCAA 59.895 50.000 0.00 0.00 46.03 4.12
615 616 0.105224 TTCGTTCTCGACAGCCCAAA 59.895 50.000 0.00 0.00 46.03 3.28
616 617 0.105224 TCGTTCTCGACAGCCCAAAA 59.895 50.000 0.00 0.00 41.35 2.44
617 618 0.941542 CGTTCTCGACAGCCCAAAAA 59.058 50.000 0.00 0.00 39.71 1.94
638 639 5.699097 AAATATCTCAGTAGACTCGCTCC 57.301 43.478 0.00 0.00 33.57 4.70
639 640 1.588674 ATCTCAGTAGACTCGCTCCG 58.411 55.000 0.00 0.00 33.57 4.63
640 641 0.249676 TCTCAGTAGACTCGCTCCGT 59.750 55.000 0.00 0.00 0.00 4.69
641 642 0.653636 CTCAGTAGACTCGCTCCGTC 59.346 60.000 0.00 0.00 0.00 4.79
642 643 0.036671 TCAGTAGACTCGCTCCGTCA 60.037 55.000 0.00 0.00 33.89 4.35
643 644 0.097325 CAGTAGACTCGCTCCGTCAC 59.903 60.000 0.00 0.00 33.89 3.67
644 645 1.025647 AGTAGACTCGCTCCGTCACC 61.026 60.000 0.00 0.00 33.89 4.02
645 646 2.104859 TAGACTCGCTCCGTCACCG 61.105 63.158 0.00 0.00 33.89 4.94
670 671 3.779271 GGAGTTTCTCCGTCGTATTCT 57.221 47.619 0.00 0.00 41.08 2.40
671 672 4.889832 GGAGTTTCTCCGTCGTATTCTA 57.110 45.455 0.00 0.00 41.08 2.10
672 673 4.596097 GGAGTTTCTCCGTCGTATTCTAC 58.404 47.826 0.00 0.00 41.08 2.59
673 674 4.497173 GGAGTTTCTCCGTCGTATTCTACC 60.497 50.000 0.00 0.00 41.08 3.18
674 675 3.064545 AGTTTCTCCGTCGTATTCTACCG 59.935 47.826 0.00 0.00 0.00 4.02
675 676 1.586422 TCTCCGTCGTATTCTACCGG 58.414 55.000 0.00 0.00 35.63 5.28
676 677 1.134401 TCTCCGTCGTATTCTACCGGT 60.134 52.381 13.98 13.98 35.74 5.28
677 678 1.003116 CTCCGTCGTATTCTACCGGTG 60.003 57.143 19.93 7.59 35.74 4.94
678 679 0.593263 CCGTCGTATTCTACCGGTGC 60.593 60.000 19.93 0.00 31.57 5.01
679 680 0.593263 CGTCGTATTCTACCGGTGCC 60.593 60.000 19.93 0.00 0.00 5.01
680 681 0.249197 GTCGTATTCTACCGGTGCCC 60.249 60.000 19.93 0.00 0.00 5.36
681 682 0.396139 TCGTATTCTACCGGTGCCCT 60.396 55.000 19.93 1.74 0.00 5.19
682 683 0.031721 CGTATTCTACCGGTGCCCTC 59.968 60.000 19.93 2.38 0.00 4.30
683 684 0.391966 GTATTCTACCGGTGCCCTCC 59.608 60.000 19.93 0.00 0.00 4.30
684 685 0.263765 TATTCTACCGGTGCCCTCCT 59.736 55.000 19.93 0.00 0.00 3.69
685 686 1.338136 ATTCTACCGGTGCCCTCCTG 61.338 60.000 19.93 0.00 0.00 3.86
686 687 2.683933 CTACCGGTGCCCTCCTGT 60.684 66.667 19.93 0.00 0.00 4.00
687 688 3.000819 TACCGGTGCCCTCCTGTG 61.001 66.667 19.93 0.00 0.00 3.66
692 693 4.284550 GTGCCCTCCTGTGCCCAA 62.285 66.667 0.00 0.00 0.00 4.12
693 694 3.506743 TGCCCTCCTGTGCCCAAA 61.507 61.111 0.00 0.00 0.00 3.28
694 695 2.203625 GCCCTCCTGTGCCCAAAA 60.204 61.111 0.00 0.00 0.00 2.44
695 696 1.836604 GCCCTCCTGTGCCCAAAAA 60.837 57.895 0.00 0.00 0.00 1.94
712 713 2.222227 AAAATCCTCTTGGTCTGGCC 57.778 50.000 0.00 0.00 37.90 5.36
713 714 0.035056 AAATCCTCTTGGTCTGGCCG 60.035 55.000 0.00 0.00 41.21 6.13
714 715 2.543067 AATCCTCTTGGTCTGGCCGC 62.543 60.000 0.00 0.00 41.21 6.53
715 716 4.785453 CCTCTTGGTCTGGCCGCC 62.785 72.222 1.04 1.04 41.21 6.13
730 731 4.179579 GCCGCGCCTCATTTCCAC 62.180 66.667 0.00 0.00 0.00 4.02
731 732 3.508840 CCGCGCCTCATTTCCACC 61.509 66.667 0.00 0.00 0.00 4.61
732 733 3.508840 CGCGCCTCATTTCCACCC 61.509 66.667 0.00 0.00 0.00 4.61
733 734 2.361104 GCGCCTCATTTCCACCCA 60.361 61.111 0.00 0.00 0.00 4.51
734 735 1.754234 GCGCCTCATTTCCACCCAT 60.754 57.895 0.00 0.00 0.00 4.00
735 736 1.728490 GCGCCTCATTTCCACCCATC 61.728 60.000 0.00 0.00 0.00 3.51
736 737 0.107017 CGCCTCATTTCCACCCATCT 60.107 55.000 0.00 0.00 0.00 2.90
737 738 1.140852 CGCCTCATTTCCACCCATCTA 59.859 52.381 0.00 0.00 0.00 1.98
738 739 2.808202 CGCCTCATTTCCACCCATCTAG 60.808 54.545 0.00 0.00 0.00 2.43
739 740 2.439507 GCCTCATTTCCACCCATCTAGA 59.560 50.000 0.00 0.00 0.00 2.43
740 741 3.495806 GCCTCATTTCCACCCATCTAGAG 60.496 52.174 0.00 0.00 0.00 2.43
741 742 3.495806 CCTCATTTCCACCCATCTAGAGC 60.496 52.174 0.00 0.00 0.00 4.09
742 743 3.114606 TCATTTCCACCCATCTAGAGCA 58.885 45.455 0.00 0.00 0.00 4.26
743 744 3.135348 TCATTTCCACCCATCTAGAGCAG 59.865 47.826 0.00 0.00 0.00 4.24
744 745 0.833287 TTCCACCCATCTAGAGCAGC 59.167 55.000 0.00 0.00 0.00 5.25
745 746 0.325577 TCCACCCATCTAGAGCAGCA 60.326 55.000 0.00 0.00 0.00 4.41
746 747 0.106335 CCACCCATCTAGAGCAGCAG 59.894 60.000 0.00 0.00 0.00 4.24
747 748 0.532417 CACCCATCTAGAGCAGCAGC 60.532 60.000 0.00 0.00 42.56 5.25
748 749 0.979709 ACCCATCTAGAGCAGCAGCA 60.980 55.000 3.17 0.00 45.49 4.41
749 750 0.249953 CCCATCTAGAGCAGCAGCAG 60.250 60.000 3.17 0.00 45.49 4.24
750 751 0.881159 CCATCTAGAGCAGCAGCAGC 60.881 60.000 3.17 0.46 45.49 5.25
751 752 0.881159 CATCTAGAGCAGCAGCAGCC 60.881 60.000 6.10 0.00 45.49 4.85
752 753 2.042404 ATCTAGAGCAGCAGCAGCCC 62.042 60.000 6.10 0.00 45.49 5.19
753 754 2.686470 TAGAGCAGCAGCAGCCCT 60.686 61.111 6.10 2.08 45.49 5.19
754 755 2.647680 CTAGAGCAGCAGCAGCCCTC 62.648 65.000 6.10 10.25 45.49 4.30
839 840 4.796606 ACATCGATTTGGGGATTTCTGAT 58.203 39.130 0.00 0.00 0.00 2.90
844 845 4.160252 CGATTTGGGGATTTCTGATTTGGT 59.840 41.667 0.00 0.00 0.00 3.67
848 849 2.497273 GGGGATTTCTGATTTGGTGTGG 59.503 50.000 0.00 0.00 0.00 4.17
860 864 2.301738 GGTGTGGGGAAGAGGGGAG 61.302 68.421 0.00 0.00 0.00 4.30
862 866 1.229529 TGTGGGGAAGAGGGGAGTC 60.230 63.158 0.00 0.00 0.00 3.36
866 870 3.471806 GGAAGAGGGGAGTCCGGC 61.472 72.222 2.26 0.00 41.52 6.13
887 891 2.282180 GAAAAGGTGCAGGGCGGA 60.282 61.111 0.00 0.00 0.00 5.54
890 894 2.754664 AAAAGGTGCAGGGCGGAGAG 62.755 60.000 0.00 0.00 0.00 3.20
894 898 2.283894 TGCAGGGCGGAGAGAAGA 60.284 61.111 0.00 0.00 0.00 2.87
896 900 2.650116 GCAGGGCGGAGAGAAGACA 61.650 63.158 0.00 0.00 0.00 3.41
900 904 1.208293 AGGGCGGAGAGAAGACAATTC 59.792 52.381 0.00 0.00 0.00 2.17
903 907 2.355209 GGCGGAGAGAAGACAATTCCTT 60.355 50.000 0.00 0.00 0.00 3.36
909 913 4.094476 AGAGAAGACAATTCCTTACCGGA 58.906 43.478 9.46 0.00 41.06 5.14
933 937 4.706962 GGGTCCTTCAATTCATGCTAAACT 59.293 41.667 0.00 0.00 0.00 2.66
936 940 7.093945 GGGTCCTTCAATTCATGCTAAACTTTA 60.094 37.037 0.00 0.00 0.00 1.85
937 941 7.970614 GGTCCTTCAATTCATGCTAAACTTTAG 59.029 37.037 4.39 4.39 0.00 1.85
938 942 8.730680 GTCCTTCAATTCATGCTAAACTTTAGA 58.269 33.333 12.05 0.00 0.00 2.10
939 943 8.950210 TCCTTCAATTCATGCTAAACTTTAGAG 58.050 33.333 12.05 2.31 0.00 2.43
940 944 7.699812 CCTTCAATTCATGCTAAACTTTAGAGC 59.300 37.037 12.05 1.57 36.72 4.09
948 952 6.974932 TGCTAAACTTTAGAGCAGATTGAG 57.025 37.500 12.05 0.00 41.18 3.02
950 954 7.334090 TGCTAAACTTTAGAGCAGATTGAGAT 58.666 34.615 12.05 0.00 41.18 2.75
951 955 7.279536 TGCTAAACTTTAGAGCAGATTGAGATG 59.720 37.037 12.05 0.00 41.18 2.90
952 956 7.493971 GCTAAACTTTAGAGCAGATTGAGATGA 59.506 37.037 12.05 0.00 36.20 2.92
953 957 7.608308 AAACTTTAGAGCAGATTGAGATGAC 57.392 36.000 0.00 0.00 0.00 3.06
954 958 6.543430 ACTTTAGAGCAGATTGAGATGACT 57.457 37.500 0.00 0.00 0.00 3.41
955 959 6.945218 ACTTTAGAGCAGATTGAGATGACTT 58.055 36.000 0.00 0.00 0.00 3.01
956 960 7.041107 ACTTTAGAGCAGATTGAGATGACTTC 58.959 38.462 0.00 0.00 0.00 3.01
957 961 6.788598 TTAGAGCAGATTGAGATGACTTCT 57.211 37.500 0.00 0.00 37.41 2.85
958 962 5.680594 AGAGCAGATTGAGATGACTTCTT 57.319 39.130 0.00 0.00 33.74 2.52
959 963 5.663456 AGAGCAGATTGAGATGACTTCTTC 58.337 41.667 0.00 0.00 33.74 2.87
960 964 5.422970 AGAGCAGATTGAGATGACTTCTTCT 59.577 40.000 0.00 0.00 33.74 2.85
962 966 4.810491 GCAGATTGAGATGACTTCTTCTCC 59.190 45.833 15.82 4.93 42.90 3.71
963 967 5.042593 CAGATTGAGATGACTTCTTCTCCG 58.957 45.833 15.82 1.39 42.90 4.63
979 1150 2.005451 CTCCGTTCTTCTCCATGCTTG 58.995 52.381 0.00 0.00 0.00 4.01
994 1165 6.704289 CCATGCTTGGATTTTTCAGATAGA 57.296 37.500 13.33 0.00 46.92 1.98
1021 1192 1.335964 TGAGTTCTTCTCTGTTCGCCG 60.336 52.381 0.00 0.00 43.13 6.46
1090 1261 1.380524 CCTTCTCAGGAAGCTGCATG 58.619 55.000 0.00 0.00 44.19 4.06
1262 1433 2.742053 TGCGTGAACTTTCCTATGAAGC 59.258 45.455 0.00 0.00 0.00 3.86
1384 1555 0.796312 TTTCAAGTCGATCAAGCCGC 59.204 50.000 0.00 0.00 0.00 6.53
1538 1709 1.273606 CCTATATGGACAGCTGACGGG 59.726 57.143 23.35 6.75 38.35 5.28
1605 1776 3.391965 GCTTACTGAGGATGCTGATCAG 58.608 50.000 18.84 18.84 44.81 2.90
1749 1920 5.440234 TGTCAGACACAAAGAGACTACTC 57.560 43.478 0.00 0.00 36.33 2.59
1785 1956 1.071239 CAAGTTCAGCGTTGTCGACTG 60.071 52.381 17.92 6.25 40.07 3.51
1900 2071 2.297033 GGAGGTGTGTGCAATCAATTGT 59.703 45.455 5.13 0.00 39.88 2.71
2480 2651 3.118811 GCTGGTCTCTTAGCAAGTCAGAT 60.119 47.826 0.00 0.00 39.67 2.90
2733 2904 7.171653 AGGAAGAAAAAGAGGTAGAGGAAATG 58.828 38.462 0.00 0.00 0.00 2.32
2869 3040 9.667107 TTATTATGTACAAGTCCAAAGAAGAGG 57.333 33.333 0.00 0.00 0.00 3.69
3400 3577 4.973168 TGAAGACAATGTACTGAGCCTTT 58.027 39.130 0.00 0.00 0.00 3.11
3594 3771 1.219393 CAGCGTTTCCTCTCCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
3821 3998 2.762327 GCATCATCTTCAACAATGGGGT 59.238 45.455 0.00 0.00 0.00 4.95
3872 4049 2.741092 CGGTGTACTGTGCCTGGT 59.259 61.111 0.00 0.00 0.00 4.00
4039 4216 1.216710 GCTGAGGAACCCGACAGAG 59.783 63.158 13.88 0.00 35.91 3.35
4352 4536 0.604243 ACACCGTATTTCGCCAGCAA 60.604 50.000 0.00 0.00 38.35 3.91
4365 4550 3.189702 TCGCCAGCAAAACCTTTATGTAC 59.810 43.478 0.00 0.00 0.00 2.90
4407 4592 6.594744 TGATGCTTACATGTCTGATGGTTAT 58.405 36.000 0.00 0.00 36.35 1.89
4465 4650 3.837213 GCATATGGATTTATGCGCAGT 57.163 42.857 18.32 6.92 43.49 4.40
4521 4706 8.961294 CAGAATGTCATTTCCTGAAAAGTTAG 57.039 34.615 8.04 0.00 35.07 2.34
4577 4762 5.831997 TCATGTACTACATCATCTGGTTCG 58.168 41.667 0.00 0.00 36.53 3.95
4589 4774 3.762407 TCTGGTTCGAGTCCAAAATCA 57.238 42.857 11.51 0.00 34.35 2.57
4781 4966 1.127567 AAGGCACCTGGAGTACTGCA 61.128 55.000 16.82 16.82 0.00 4.41
4782 4967 1.127567 AGGCACCTGGAGTACTGCAA 61.128 55.000 18.33 2.71 0.00 4.08
4951 5139 4.844349 ATGAAGCTACCAACAGGTATGT 57.156 40.909 0.00 0.00 43.15 2.29
5010 5200 9.959749 TGTTAAATTCTGAATGTTGGTTTACTC 57.040 29.630 3.22 0.00 0.00 2.59
5326 6667 2.899900 ACCTACTGTCATGTGAGAGCAA 59.100 45.455 7.04 0.00 38.85 3.91
5354 6695 2.016393 CTGACGCGCCAAGGATAGGA 62.016 60.000 5.73 0.00 0.00 2.94
5355 6696 1.300233 GACGCGCCAAGGATAGGAG 60.300 63.158 5.73 0.00 0.00 3.69
5564 6907 3.432326 CCCTAGCAGCCGAAACTTAGAAT 60.432 47.826 0.00 0.00 0.00 2.40
5642 6986 6.153170 ACTTAAGTCTCTAAAGCACCCTAGTC 59.847 42.308 1.12 0.00 0.00 2.59
5684 7028 8.133627 GGATTCATTTAAGTTCTCATCATGTGG 58.866 37.037 0.00 0.00 0.00 4.17
5721 7066 3.006247 GGCTTTTCTCCTCTGTGATGAC 58.994 50.000 0.00 0.00 0.00 3.06
5879 7224 7.119699 TCTGAGCTAAGTAATTCCACATGTTTG 59.880 37.037 0.00 0.00 0.00 2.93
6130 7475 3.780626 AGTTCCTGCTAACTAGGTCAGT 58.219 45.455 0.00 0.00 37.93 3.41
6136 7481 1.568504 CTAACTAGGTCAGTGGGGCA 58.431 55.000 0.00 0.00 37.63 5.36
6254 7599 1.286553 ACTCGTCCATCTCTCTCCCTT 59.713 52.381 0.00 0.00 0.00 3.95
6257 7602 2.497675 TCGTCCATCTCTCTCCCTTTTG 59.502 50.000 0.00 0.00 0.00 2.44
6341 7686 0.961019 TTGTCAAGCCAACATGCCTC 59.039 50.000 0.00 0.00 0.00 4.70
6369 7714 5.747675 CACACAACAACATTTCAAGCATGTA 59.252 36.000 0.00 0.00 33.54 2.29
6370 7715 6.421501 CACACAACAACATTTCAAGCATGTAT 59.578 34.615 0.00 0.00 33.54 2.29
6371 7716 6.985645 ACACAACAACATTTCAAGCATGTATT 59.014 30.769 0.00 0.00 33.54 1.89
6372 7717 7.495279 ACACAACAACATTTCAAGCATGTATTT 59.505 29.630 0.00 0.00 33.54 1.40
6373 7718 8.976471 CACAACAACATTTCAAGCATGTATTTA 58.024 29.630 0.00 0.00 33.54 1.40
6374 7719 9.709495 ACAACAACATTTCAAGCATGTATTTAT 57.291 25.926 0.00 0.00 33.54 1.40
6375 7720 9.961266 CAACAACATTTCAAGCATGTATTTATG 57.039 29.630 0.00 0.00 33.54 1.90
6376 7721 9.926158 AACAACATTTCAAGCATGTATTTATGA 57.074 25.926 0.00 0.00 33.54 2.15
6377 7722 9.357652 ACAACATTTCAAGCATGTATTTATGAC 57.642 29.630 0.00 0.00 33.54 3.06
6378 7723 9.577110 CAACATTTCAAGCATGTATTTATGACT 57.423 29.630 0.00 0.00 33.54 3.41
6379 7724 9.577110 AACATTTCAAGCATGTATTTATGACTG 57.423 29.630 0.00 0.00 33.54 3.51
6380 7725 7.703621 ACATTTCAAGCATGTATTTATGACTGC 59.296 33.333 0.00 0.00 32.88 4.40
6381 7726 5.756195 TCAAGCATGTATTTATGACTGCC 57.244 39.130 0.00 0.00 0.00 4.85
6382 7727 5.192176 TCAAGCATGTATTTATGACTGCCA 58.808 37.500 0.00 0.00 0.00 4.92
6383 7728 5.829391 TCAAGCATGTATTTATGACTGCCAT 59.171 36.000 0.00 0.00 39.25 4.40
6384 7729 6.321945 TCAAGCATGTATTTATGACTGCCATT 59.678 34.615 0.00 0.00 36.71 3.16
6385 7730 6.720112 AGCATGTATTTATGACTGCCATTT 57.280 33.333 0.00 0.00 36.71 2.32
6386 7731 6.509656 AGCATGTATTTATGACTGCCATTTG 58.490 36.000 0.00 0.00 36.71 2.32
6387 7732 6.097270 AGCATGTATTTATGACTGCCATTTGT 59.903 34.615 0.00 0.00 36.71 2.83
6388 7733 6.199531 GCATGTATTTATGACTGCCATTTGTG 59.800 38.462 0.00 0.00 36.71 3.33
6389 7734 5.649557 TGTATTTATGACTGCCATTTGTGC 58.350 37.500 0.00 0.00 36.71 4.57
6390 7735 5.418524 TGTATTTATGACTGCCATTTGTGCT 59.581 36.000 0.00 0.00 36.71 4.40
6391 7736 3.853831 TTATGACTGCCATTTGTGCTG 57.146 42.857 0.00 0.00 36.71 4.41
6392 7737 1.624336 ATGACTGCCATTTGTGCTGT 58.376 45.000 0.00 0.00 42.57 4.40
6393 7738 3.780925 GACTGCCATTTGTGCTGTC 57.219 52.632 6.53 6.53 45.85 3.51
6394 7739 0.242017 GACTGCCATTTGTGCTGTCC 59.758 55.000 10.10 0.00 46.06 4.02
6395 7740 0.178981 ACTGCCATTTGTGCTGTCCT 60.179 50.000 0.00 0.00 36.32 3.85
6396 7741 0.242825 CTGCCATTTGTGCTGTCCTG 59.757 55.000 0.00 0.00 0.00 3.86
6397 7742 1.180456 TGCCATTTGTGCTGTCCTGG 61.180 55.000 0.00 0.00 0.00 4.45
6398 7743 0.895100 GCCATTTGTGCTGTCCTGGA 60.895 55.000 0.00 0.00 0.00 3.86
6399 7744 1.843368 CCATTTGTGCTGTCCTGGAT 58.157 50.000 0.00 0.00 0.00 3.41
6400 7745 2.945440 GCCATTTGTGCTGTCCTGGATA 60.945 50.000 0.00 0.00 0.00 2.59
6401 7746 3.559069 CCATTTGTGCTGTCCTGGATAT 58.441 45.455 0.00 0.00 0.00 1.63
6402 7747 3.956199 CCATTTGTGCTGTCCTGGATATT 59.044 43.478 0.00 0.00 0.00 1.28
6403 7748 4.202080 CCATTTGTGCTGTCCTGGATATTG 60.202 45.833 0.00 0.00 0.00 1.90
6404 7749 2.715749 TGTGCTGTCCTGGATATTGG 57.284 50.000 0.00 0.00 0.00 3.16
6405 7750 1.312815 GTGCTGTCCTGGATATTGGC 58.687 55.000 0.00 0.00 0.00 4.52
6406 7751 1.133976 GTGCTGTCCTGGATATTGGCT 60.134 52.381 0.00 0.00 0.00 4.75
6407 7752 1.565759 TGCTGTCCTGGATATTGGCTT 59.434 47.619 0.00 0.00 0.00 4.35
6408 7753 2.225467 GCTGTCCTGGATATTGGCTTC 58.775 52.381 0.00 0.00 0.00 3.86
6409 7754 2.421952 GCTGTCCTGGATATTGGCTTCA 60.422 50.000 0.00 0.00 0.00 3.02
6410 7755 3.889815 CTGTCCTGGATATTGGCTTCAA 58.110 45.455 0.00 0.00 34.56 2.69
6411 7756 4.467769 CTGTCCTGGATATTGGCTTCAAT 58.532 43.478 0.00 0.00 43.00 2.57
6412 7757 4.870636 TGTCCTGGATATTGGCTTCAATT 58.129 39.130 0.00 0.00 41.04 2.32
6413 7758 4.889409 TGTCCTGGATATTGGCTTCAATTC 59.111 41.667 0.00 0.00 41.04 2.17
6414 7759 5.136105 GTCCTGGATATTGGCTTCAATTCT 58.864 41.667 0.00 0.00 41.04 2.40
6415 7760 5.595952 GTCCTGGATATTGGCTTCAATTCTT 59.404 40.000 0.00 0.00 41.04 2.52
6416 7761 6.097412 GTCCTGGATATTGGCTTCAATTCTTT 59.903 38.462 0.00 0.00 41.04 2.52
6417 7762 7.285401 GTCCTGGATATTGGCTTCAATTCTTTA 59.715 37.037 0.00 0.00 41.04 1.85
6418 7763 7.503566 TCCTGGATATTGGCTTCAATTCTTTAG 59.496 37.037 0.00 0.00 41.04 1.85
6419 7764 7.042797 TGGATATTGGCTTCAATTCTTTAGC 57.957 36.000 0.00 0.00 41.04 3.09
6423 7768 3.406728 GGCTTCAATTCTTTAGCCGTC 57.593 47.619 0.00 0.00 43.24 4.79
6424 7769 2.097629 GGCTTCAATTCTTTAGCCGTCC 59.902 50.000 0.00 0.00 43.24 4.79
6425 7770 2.747446 GCTTCAATTCTTTAGCCGTCCA 59.253 45.455 0.00 0.00 0.00 4.02
6426 7771 3.378427 GCTTCAATTCTTTAGCCGTCCAT 59.622 43.478 0.00 0.00 0.00 3.41
6427 7772 4.574828 GCTTCAATTCTTTAGCCGTCCATA 59.425 41.667 0.00 0.00 0.00 2.74
6428 7773 5.239525 GCTTCAATTCTTTAGCCGTCCATAT 59.760 40.000 0.00 0.00 0.00 1.78
6429 7774 6.618287 TTCAATTCTTTAGCCGTCCATATG 57.382 37.500 0.00 0.00 0.00 1.78
6430 7775 5.680619 TCAATTCTTTAGCCGTCCATATGT 58.319 37.500 1.24 0.00 0.00 2.29
6431 7776 6.822442 TCAATTCTTTAGCCGTCCATATGTA 58.178 36.000 1.24 0.00 0.00 2.29
6432 7777 6.704493 TCAATTCTTTAGCCGTCCATATGTAC 59.296 38.462 1.24 0.00 0.00 2.90
6433 7778 5.864418 TTCTTTAGCCGTCCATATGTACT 57.136 39.130 1.24 0.00 0.00 2.73
6434 7779 5.196341 TCTTTAGCCGTCCATATGTACTG 57.804 43.478 1.24 0.00 0.00 2.74
6435 7780 4.647853 TCTTTAGCCGTCCATATGTACTGT 59.352 41.667 1.24 0.00 0.00 3.55
6436 7781 5.128171 TCTTTAGCCGTCCATATGTACTGTT 59.872 40.000 1.24 0.00 0.00 3.16
6437 7782 3.906720 AGCCGTCCATATGTACTGTTT 57.093 42.857 1.24 0.00 0.00 2.83
6438 7783 6.468333 TTAGCCGTCCATATGTACTGTTTA 57.532 37.500 1.24 0.00 0.00 2.01
6439 7784 5.347620 AGCCGTCCATATGTACTGTTTAA 57.652 39.130 1.24 0.00 0.00 1.52
6440 7785 5.925509 AGCCGTCCATATGTACTGTTTAAT 58.074 37.500 1.24 0.00 0.00 1.40
6441 7786 6.354130 AGCCGTCCATATGTACTGTTTAATT 58.646 36.000 1.24 0.00 0.00 1.40
6442 7787 6.826741 AGCCGTCCATATGTACTGTTTAATTT 59.173 34.615 1.24 0.00 0.00 1.82
6443 7788 7.338449 AGCCGTCCATATGTACTGTTTAATTTT 59.662 33.333 1.24 0.00 0.00 1.82
6444 7789 8.614346 GCCGTCCATATGTACTGTTTAATTTTA 58.386 33.333 1.24 0.00 0.00 1.52
6445 7790 9.925268 CCGTCCATATGTACTGTTTAATTTTAC 57.075 33.333 1.24 0.00 0.00 2.01
6625 7970 8.818057 GTTGCGTCCATAATCATATATTACCTC 58.182 37.037 0.00 0.00 0.00 3.85
6629 7974 8.843262 CGTCCATAATCATATATTACCTCCGTA 58.157 37.037 0.00 0.00 0.00 4.02
6974 8319 7.894364 ACAACTACCAGAATAGTTAGGAAGAGA 59.106 37.037 0.00 0.00 42.30 3.10
6975 8320 8.410141 CAACTACCAGAATAGTTAGGAAGAGAG 58.590 40.741 0.00 0.00 42.30 3.20
7004 8349 2.114616 ACTTAGCTGGGAGAGTGGATG 58.885 52.381 0.00 0.00 0.00 3.51
7033 8378 2.422127 CGACCACCTGTGTTCAAGTTTT 59.578 45.455 0.00 0.00 0.00 2.43
7111 8456 9.476202 GCAACTAAAATAACTTCTGGAATTGTT 57.524 29.630 0.00 0.00 0.00 2.83
7196 8554 4.891756 ACAGGGATATCAAAGGAGCAAATG 59.108 41.667 4.83 0.00 0.00 2.32
7343 8701 7.627585 GGTACCTTTTATTTTCCGTTTTGTC 57.372 36.000 4.06 0.00 0.00 3.18
7376 8734 4.336433 CGTCAAGATGATGCAAAACCCTAT 59.664 41.667 0.00 0.00 0.00 2.57
7378 8736 6.293081 CGTCAAGATGATGCAAAACCCTATAG 60.293 42.308 0.00 0.00 0.00 1.31
7396 8754 1.966451 GCTCCACCCCACAAGAACG 60.966 63.158 0.00 0.00 0.00 3.95
7483 8842 4.619863 GCACTCGGGTGATAGTCTAAACAA 60.620 45.833 22.35 0.00 45.61 2.83
7489 8848 5.336531 CGGGTGATAGTCTAAACAAGTGAGT 60.337 44.000 0.00 0.00 0.00 3.41
7576 8942 1.135139 GCCTCACATCGACTTCAGCTA 59.865 52.381 0.00 0.00 0.00 3.32
7577 8943 2.417379 GCCTCACATCGACTTCAGCTAA 60.417 50.000 0.00 0.00 0.00 3.09
7578 8944 3.849911 CCTCACATCGACTTCAGCTAAA 58.150 45.455 0.00 0.00 0.00 1.85
7579 8945 4.245660 CCTCACATCGACTTCAGCTAAAA 58.754 43.478 0.00 0.00 0.00 1.52
7580 8946 4.690748 CCTCACATCGACTTCAGCTAAAAA 59.309 41.667 0.00 0.00 0.00 1.94
7627 8993 1.283793 CCAGCGCTGAACAGTTTGG 59.716 57.895 38.06 15.70 0.00 3.28
7691 9057 5.505181 ACATCTGAATGGTGACTTAGGTT 57.495 39.130 0.00 0.00 37.19 3.50
7728 9094 0.672342 CAGCTTTTCTGCACCAGCTT 59.328 50.000 2.20 0.00 40.75 3.74
7779 9145 0.678048 GTCACTCTGTTGGATGGGGC 60.678 60.000 0.00 0.00 0.00 5.80
7908 9274 0.885596 GATGATGCAGGCCTCAGCTC 60.886 60.000 15.52 10.82 39.73 4.09
7909 9275 2.203181 GATGCAGGCCTCAGCTCC 60.203 66.667 15.52 4.47 39.73 4.70
7910 9276 4.172512 ATGCAGGCCTCAGCTCCG 62.173 66.667 15.52 0.00 39.73 4.63
7912 9278 3.859414 GCAGGCCTCAGCTCCGAT 61.859 66.667 0.00 0.00 39.73 4.18
8079 9447 5.930837 AGTTTCTTGTGGAAATGGAAACA 57.069 34.783 15.77 0.00 44.46 2.83
8159 9527 6.431198 GGAAGTTTCCGTTTATCTATTGCA 57.569 37.500 0.00 0.00 37.65 4.08
8161 9529 6.912591 GGAAGTTTCCGTTTATCTATTGCATG 59.087 38.462 0.00 0.00 37.65 4.06
8176 9544 0.745845 GCATGTGTAGCCCACTCCAG 60.746 60.000 5.79 0.00 44.81 3.86
8200 9568 3.315191 CCAACCCATATAGACTTTTGGCG 59.685 47.826 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 226 9.981460 AGGGAACAAATCATATCTACTTTCTTT 57.019 29.630 0.00 0.00 0.00 2.52
226 227 9.401058 CAGGGAACAAATCATATCTACTTTCTT 57.599 33.333 0.00 0.00 0.00 2.52
238 239 8.531146 CCAACTAATTAACAGGGAACAAATCAT 58.469 33.333 0.00 0.00 0.00 2.45
239 240 7.507616 ACCAACTAATTAACAGGGAACAAATCA 59.492 33.333 0.00 0.00 0.00 2.57
240 241 7.892609 ACCAACTAATTAACAGGGAACAAATC 58.107 34.615 0.00 0.00 0.00 2.17
241 242 7.849322 ACCAACTAATTAACAGGGAACAAAT 57.151 32.000 0.00 0.00 0.00 2.32
242 243 7.201929 GGAACCAACTAATTAACAGGGAACAAA 60.202 37.037 0.00 0.00 0.00 2.83
243 244 6.265876 GGAACCAACTAATTAACAGGGAACAA 59.734 38.462 0.00 0.00 0.00 2.83
244 245 5.771165 GGAACCAACTAATTAACAGGGAACA 59.229 40.000 0.00 0.00 0.00 3.18
245 246 5.106436 CGGAACCAACTAATTAACAGGGAAC 60.106 44.000 0.00 0.00 0.00 3.62
246 247 5.005094 CGGAACCAACTAATTAACAGGGAA 58.995 41.667 0.00 0.00 0.00 3.97
247 248 4.041938 ACGGAACCAACTAATTAACAGGGA 59.958 41.667 0.00 0.00 0.00 4.20
248 249 4.329392 ACGGAACCAACTAATTAACAGGG 58.671 43.478 0.00 0.00 0.00 4.45
249 250 5.335348 CCAACGGAACCAACTAATTAACAGG 60.335 44.000 0.00 0.00 0.00 4.00
250 251 5.335348 CCCAACGGAACCAACTAATTAACAG 60.335 44.000 0.00 0.00 0.00 3.16
251 252 4.519730 CCCAACGGAACCAACTAATTAACA 59.480 41.667 0.00 0.00 0.00 2.41
252 253 4.520111 ACCCAACGGAACCAACTAATTAAC 59.480 41.667 0.00 0.00 0.00 2.01
253 254 4.727677 ACCCAACGGAACCAACTAATTAA 58.272 39.130 0.00 0.00 0.00 1.40
254 255 4.370094 ACCCAACGGAACCAACTAATTA 57.630 40.909 0.00 0.00 0.00 1.40
255 256 3.232720 ACCCAACGGAACCAACTAATT 57.767 42.857 0.00 0.00 0.00 1.40
256 257 2.963599 ACCCAACGGAACCAACTAAT 57.036 45.000 0.00 0.00 0.00 1.73
257 258 3.853355 TTACCCAACGGAACCAACTAA 57.147 42.857 0.00 0.00 0.00 2.24
389 390 2.817258 CGAAAAGACACAATTGCCCCTA 59.183 45.455 5.05 0.00 0.00 3.53
461 462 8.680039 TTCATTTTTCTTTTGATGATTTGCCT 57.320 26.923 0.00 0.00 0.00 4.75
573 574 3.480133 CGGGGGCCACCTCCTAAG 61.480 72.222 25.09 0.00 40.03 2.18
586 587 4.692475 AGAACGAAACCGGCGGGG 62.692 66.667 31.78 18.08 43.62 5.73
587 588 3.116531 GAGAACGAAACCGGCGGG 61.117 66.667 31.78 14.93 40.11 6.13
588 589 3.475774 CGAGAACGAAACCGGCGG 61.476 66.667 27.06 27.06 42.66 6.13
589 590 2.429571 TCGAGAACGAAACCGGCG 60.430 61.111 0.00 0.00 45.74 6.46
597 598 0.105224 TTTTGGGCTGTCGAGAACGA 59.895 50.000 0.00 0.00 46.56 3.85
598 599 0.941542 TTTTTGGGCTGTCGAGAACG 59.058 50.000 0.00 0.00 41.26 3.95
614 615 6.508777 GGAGCGAGTCTACTGAGATATTTTT 58.491 40.000 0.00 0.00 33.14 1.94
615 616 5.278071 CGGAGCGAGTCTACTGAGATATTTT 60.278 44.000 0.00 0.00 33.14 1.82
616 617 4.214545 CGGAGCGAGTCTACTGAGATATTT 59.785 45.833 0.00 0.00 33.14 1.40
617 618 3.749088 CGGAGCGAGTCTACTGAGATATT 59.251 47.826 0.00 0.00 33.14 1.28
618 619 3.244284 ACGGAGCGAGTCTACTGAGATAT 60.244 47.826 0.00 0.00 33.14 1.63
619 620 2.102757 ACGGAGCGAGTCTACTGAGATA 59.897 50.000 0.00 0.00 33.14 1.98
620 621 1.134340 ACGGAGCGAGTCTACTGAGAT 60.134 52.381 0.00 0.00 33.14 2.75
621 622 0.249676 ACGGAGCGAGTCTACTGAGA 59.750 55.000 0.00 0.00 0.00 3.27
622 623 0.653636 GACGGAGCGAGTCTACTGAG 59.346 60.000 0.00 0.00 35.84 3.35
623 624 0.036671 TGACGGAGCGAGTCTACTGA 60.037 55.000 9.84 0.00 39.24 3.41
624 625 0.097325 GTGACGGAGCGAGTCTACTG 59.903 60.000 9.84 0.00 39.24 2.74
625 626 1.025647 GGTGACGGAGCGAGTCTACT 61.026 60.000 9.84 0.00 39.24 2.57
626 627 1.428620 GGTGACGGAGCGAGTCTAC 59.571 63.158 9.84 6.91 39.24 2.59
627 628 3.900855 GGTGACGGAGCGAGTCTA 58.099 61.111 9.84 0.00 39.24 2.59
650 651 3.779271 AGAATACGACGGAGAAACTCC 57.221 47.619 7.65 7.65 46.44 3.85
651 652 4.596097 GGTAGAATACGACGGAGAAACTC 58.404 47.826 0.00 0.00 44.28 3.01
652 653 3.064545 CGGTAGAATACGACGGAGAAACT 59.935 47.826 0.00 0.00 44.28 2.66
653 654 3.357897 CGGTAGAATACGACGGAGAAAC 58.642 50.000 0.00 0.00 44.28 2.78
654 655 2.355756 CCGGTAGAATACGACGGAGAAA 59.644 50.000 0.00 0.00 45.39 2.52
655 656 1.942657 CCGGTAGAATACGACGGAGAA 59.057 52.381 0.00 0.00 45.39 2.87
656 657 1.134401 ACCGGTAGAATACGACGGAGA 60.134 52.381 4.49 0.00 45.39 3.71
657 658 1.003116 CACCGGTAGAATACGACGGAG 60.003 57.143 6.87 0.00 45.39 4.63
658 659 1.016627 CACCGGTAGAATACGACGGA 58.983 55.000 6.87 0.00 45.39 4.69
660 661 0.593263 GGCACCGGTAGAATACGACG 60.593 60.000 6.87 0.00 44.28 5.12
661 662 0.249197 GGGCACCGGTAGAATACGAC 60.249 60.000 6.87 0.00 40.78 4.34
662 663 2.118132 GGGCACCGGTAGAATACGA 58.882 57.895 6.87 0.00 40.78 3.43
663 664 4.744316 GGGCACCGGTAGAATACG 57.256 61.111 6.87 0.00 40.78 3.06
675 676 3.808218 TTTGGGCACAGGAGGGCAC 62.808 63.158 0.00 0.00 0.00 5.01
676 677 2.595954 TTTTTGGGCACAGGAGGGCA 62.596 55.000 0.00 0.00 0.00 5.36
677 678 1.836604 TTTTTGGGCACAGGAGGGC 60.837 57.895 0.00 0.00 0.00 5.19
678 679 4.617200 TTTTTGGGCACAGGAGGG 57.383 55.556 0.00 0.00 0.00 4.30
692 693 2.529632 GGCCAGACCAAGAGGATTTTT 58.470 47.619 0.00 0.00 38.86 1.94
693 694 1.614317 CGGCCAGACCAAGAGGATTTT 60.614 52.381 2.24 0.00 39.03 1.82
694 695 0.035056 CGGCCAGACCAAGAGGATTT 60.035 55.000 2.24 0.00 39.03 2.17
695 696 1.604378 CGGCCAGACCAAGAGGATT 59.396 57.895 2.24 0.00 39.03 3.01
696 697 3.036429 GCGGCCAGACCAAGAGGAT 62.036 63.158 2.24 0.00 39.03 3.24
697 698 3.706373 GCGGCCAGACCAAGAGGA 61.706 66.667 2.24 0.00 39.03 3.71
698 699 4.785453 GGCGGCCAGACCAAGAGG 62.785 72.222 15.62 0.00 39.03 3.69
713 714 4.179579 GTGGAAATGAGGCGCGGC 62.180 66.667 27.06 27.06 0.00 6.53
714 715 3.508840 GGTGGAAATGAGGCGCGG 61.509 66.667 8.83 0.00 0.00 6.46
715 716 3.508840 GGGTGGAAATGAGGCGCG 61.509 66.667 0.00 0.00 0.00 6.86
716 717 1.728490 GATGGGTGGAAATGAGGCGC 61.728 60.000 0.00 0.00 0.00 6.53
717 718 0.107017 AGATGGGTGGAAATGAGGCG 60.107 55.000 0.00 0.00 0.00 5.52
718 719 2.439507 TCTAGATGGGTGGAAATGAGGC 59.560 50.000 0.00 0.00 0.00 4.70
719 720 3.495806 GCTCTAGATGGGTGGAAATGAGG 60.496 52.174 0.00 0.00 0.00 3.86
720 721 3.135348 TGCTCTAGATGGGTGGAAATGAG 59.865 47.826 0.00 0.00 0.00 2.90
721 722 3.114606 TGCTCTAGATGGGTGGAAATGA 58.885 45.455 0.00 0.00 0.00 2.57
722 723 3.474600 CTGCTCTAGATGGGTGGAAATG 58.525 50.000 0.00 0.00 0.00 2.32
723 724 2.158696 GCTGCTCTAGATGGGTGGAAAT 60.159 50.000 0.00 0.00 0.00 2.17
724 725 1.210478 GCTGCTCTAGATGGGTGGAAA 59.790 52.381 0.00 0.00 0.00 3.13
725 726 0.833287 GCTGCTCTAGATGGGTGGAA 59.167 55.000 0.00 0.00 0.00 3.53
726 727 0.325577 TGCTGCTCTAGATGGGTGGA 60.326 55.000 0.00 0.00 0.00 4.02
727 728 0.106335 CTGCTGCTCTAGATGGGTGG 59.894 60.000 0.00 0.00 0.00 4.61
728 729 0.532417 GCTGCTGCTCTAGATGGGTG 60.532 60.000 8.53 0.00 36.03 4.61
729 730 0.979709 TGCTGCTGCTCTAGATGGGT 60.980 55.000 17.00 0.00 40.48 4.51
730 731 0.249953 CTGCTGCTGCTCTAGATGGG 60.250 60.000 17.00 0.00 40.48 4.00
731 732 0.881159 GCTGCTGCTGCTCTAGATGG 60.881 60.000 22.10 0.00 40.48 3.51
732 733 0.881159 GGCTGCTGCTGCTCTAGATG 60.881 60.000 26.79 0.29 40.48 2.90
733 734 1.446791 GGCTGCTGCTGCTCTAGAT 59.553 57.895 26.79 0.00 40.48 1.98
734 735 2.729479 GGGCTGCTGCTGCTCTAGA 61.729 63.158 26.79 0.00 40.48 2.43
735 736 2.203042 GGGCTGCTGCTGCTCTAG 60.203 66.667 26.79 7.06 40.48 2.43
736 737 2.686470 AGGGCTGCTGCTGCTCTA 60.686 61.111 29.19 0.00 37.37 2.43
737 738 4.098722 GAGGGCTGCTGCTGCTCT 62.099 66.667 30.37 30.37 41.71 4.09
807 808 0.106149 AAATCGATGTAGCCGGGGAC 59.894 55.000 2.18 0.00 0.00 4.46
808 809 0.105964 CAAATCGATGTAGCCGGGGA 59.894 55.000 2.18 0.00 0.00 4.81
809 810 0.884704 CCAAATCGATGTAGCCGGGG 60.885 60.000 2.18 0.00 0.00 5.73
839 840 1.725169 CCCCTCTTCCCCACACCAAA 61.725 60.000 0.00 0.00 0.00 3.28
844 845 1.229529 GACTCCCCTCTTCCCCACA 60.230 63.158 0.00 0.00 0.00 4.17
848 849 2.764547 CCGGACTCCCCTCTTCCC 60.765 72.222 0.00 0.00 0.00 3.97
860 864 4.340246 ACCTTTTCCCCGCCGGAC 62.340 66.667 5.05 0.00 41.83 4.79
866 870 2.676471 CCCTGCACCTTTTCCCCG 60.676 66.667 0.00 0.00 0.00 5.73
869 873 3.373565 CCGCCCTGCACCTTTTCC 61.374 66.667 0.00 0.00 0.00 3.13
872 876 3.249189 TCTCCGCCCTGCACCTTT 61.249 61.111 0.00 0.00 0.00 3.11
874 878 4.704103 TCTCTCCGCCCTGCACCT 62.704 66.667 0.00 0.00 0.00 4.00
875 879 3.672295 CTTCTCTCCGCCCTGCACC 62.672 68.421 0.00 0.00 0.00 5.01
880 884 1.208293 GAATTGTCTTCTCTCCGCCCT 59.792 52.381 0.00 0.00 0.00 5.19
887 891 4.473477 CCGGTAAGGAATTGTCTTCTCT 57.527 45.455 0.00 0.00 45.00 3.10
900 904 0.616679 TGAAGGACCCTCCGGTAAGG 60.617 60.000 0.00 0.70 44.88 2.69
903 907 1.835531 GAATTGAAGGACCCTCCGGTA 59.164 52.381 0.00 0.00 44.88 4.02
909 913 4.591321 TTAGCATGAATTGAAGGACCCT 57.409 40.909 0.00 0.00 0.00 4.34
913 917 8.862325 TCTAAAGTTTAGCATGAATTGAAGGA 57.138 30.769 16.46 0.00 0.00 3.36
916 920 8.109705 TGCTCTAAAGTTTAGCATGAATTGAA 57.890 30.769 16.46 0.00 41.15 2.69
917 921 7.607607 TCTGCTCTAAAGTTTAGCATGAATTGA 59.392 33.333 16.46 5.89 44.69 2.57
922 926 7.105588 TCAATCTGCTCTAAAGTTTAGCATGA 58.894 34.615 16.46 12.50 44.69 3.07
923 927 7.279536 TCTCAATCTGCTCTAAAGTTTAGCATG 59.720 37.037 16.46 10.70 44.69 4.06
933 937 7.180322 AGAAGTCATCTCAATCTGCTCTAAA 57.820 36.000 0.00 0.00 30.46 1.85
936 940 5.422970 AGAAGAAGTCATCTCAATCTGCTCT 59.577 40.000 0.00 0.00 37.42 4.09
937 941 5.663456 AGAAGAAGTCATCTCAATCTGCTC 58.337 41.667 0.00 0.00 37.42 4.26
938 942 5.395546 GGAGAAGAAGTCATCTCAATCTGCT 60.396 44.000 13.80 0.00 41.14 4.24
939 943 4.810491 GGAGAAGAAGTCATCTCAATCTGC 59.190 45.833 13.80 0.00 41.14 4.26
940 944 5.042593 CGGAGAAGAAGTCATCTCAATCTG 58.957 45.833 13.80 0.00 41.14 2.90
941 945 4.709397 ACGGAGAAGAAGTCATCTCAATCT 59.291 41.667 13.80 0.00 41.14 2.40
942 946 5.004922 ACGGAGAAGAAGTCATCTCAATC 57.995 43.478 13.80 0.00 41.14 2.67
944 948 4.524714 AGAACGGAGAAGAAGTCATCTCAA 59.475 41.667 13.80 0.00 41.14 3.02
945 949 4.082845 AGAACGGAGAAGAAGTCATCTCA 58.917 43.478 13.80 0.00 41.14 3.27
946 950 4.712122 AGAACGGAGAAGAAGTCATCTC 57.288 45.455 5.22 5.22 37.42 2.75
947 951 4.770010 AGAAGAACGGAGAAGAAGTCATCT 59.230 41.667 0.00 0.00 41.32 2.90
948 952 5.066968 AGAAGAACGGAGAAGAAGTCATC 57.933 43.478 0.00 0.00 0.00 2.92
950 954 3.256136 GGAGAAGAACGGAGAAGAAGTCA 59.744 47.826 0.00 0.00 0.00 3.41
951 955 3.256136 TGGAGAAGAACGGAGAAGAAGTC 59.744 47.826 0.00 0.00 0.00 3.01
952 956 3.231818 TGGAGAAGAACGGAGAAGAAGT 58.768 45.455 0.00 0.00 0.00 3.01
953 957 3.944055 TGGAGAAGAACGGAGAAGAAG 57.056 47.619 0.00 0.00 0.00 2.85
954 958 3.617531 GCATGGAGAAGAACGGAGAAGAA 60.618 47.826 0.00 0.00 0.00 2.52
955 959 2.093973 GCATGGAGAAGAACGGAGAAGA 60.094 50.000 0.00 0.00 0.00 2.87
956 960 2.093764 AGCATGGAGAAGAACGGAGAAG 60.094 50.000 0.00 0.00 0.00 2.85
957 961 1.902508 AGCATGGAGAAGAACGGAGAA 59.097 47.619 0.00 0.00 0.00 2.87
958 962 1.561643 AGCATGGAGAAGAACGGAGA 58.438 50.000 0.00 0.00 0.00 3.71
959 963 2.005451 CAAGCATGGAGAAGAACGGAG 58.995 52.381 0.00 0.00 0.00 4.63
960 964 2.099141 CAAGCATGGAGAAGAACGGA 57.901 50.000 0.00 0.00 0.00 4.69
990 1161 9.866655 AACAGAGAAGAACTCATCTCTATCTAT 57.133 33.333 12.75 0.00 45.84 1.98
991 1162 9.337396 GAACAGAGAAGAACTCATCTCTATCTA 57.663 37.037 12.75 0.00 45.84 1.98
992 1163 7.012327 CGAACAGAGAAGAACTCATCTCTATCT 59.988 40.741 12.75 2.91 45.84 1.98
993 1164 7.132213 CGAACAGAGAAGAACTCATCTCTATC 58.868 42.308 12.75 12.59 45.84 2.08
994 1165 6.459573 GCGAACAGAGAAGAACTCATCTCTAT 60.460 42.308 12.75 1.16 45.84 1.98
1262 1433 0.524392 GTCGTCGATGCAGTCCTCTG 60.524 60.000 0.00 0.00 43.87 3.35
1310 1481 2.663196 GGACGGGTCTGGTCTTGG 59.337 66.667 0.00 0.00 34.82 3.61
1375 1546 3.434319 CCTTGTGCGCGGCTTGAT 61.434 61.111 8.83 0.00 0.00 2.57
1384 1555 1.200020 GATCTTGGAAACCCTTGTGCG 59.800 52.381 0.00 0.00 0.00 5.34
1531 1702 0.951558 CCAACAAGGAAACCCGTCAG 59.048 55.000 0.00 0.00 41.22 3.51
1532 1703 0.256464 ACCAACAAGGAAACCCGTCA 59.744 50.000 0.00 0.00 41.22 4.35
1538 1709 2.875933 TCATCGACACCAACAAGGAAAC 59.124 45.455 0.00 0.00 41.22 2.78
1605 1776 6.968131 TCTATACACATCACTTTCAGTTGC 57.032 37.500 0.00 0.00 0.00 4.17
1662 1833 0.790814 GCTCACGGTACAGCTGTTTC 59.209 55.000 27.06 17.85 33.66 2.78
1695 1866 1.737355 GCACAAAAGCCCAGCAGTCA 61.737 55.000 0.00 0.00 0.00 3.41
1725 1896 6.019779 AGTAGTCTCTTTGTGTCTGACATC 57.980 41.667 14.37 8.38 33.40 3.06
1727 1898 4.023963 CGAGTAGTCTCTTTGTGTCTGACA 60.024 45.833 6.36 6.36 38.45 3.58
1749 1920 0.749649 CTTGAGAGAGGATGTCCCCG 59.250 60.000 0.00 0.00 36.42 5.73
1785 1956 0.250081 CCTCGCAGGAATAAGAGGGC 60.250 60.000 2.61 0.00 44.78 5.19
1867 2038 0.179029 ACACCTCCACGGGACAAAAG 60.179 55.000 0.00 0.00 36.97 2.27
1930 2101 1.271488 TGCACAATCATGAGCACTGGA 60.271 47.619 0.09 0.00 46.18 3.86
2480 2651 3.308401 TGCCATAGCTCAGAGTTATCCA 58.692 45.455 3.86 2.74 40.80 3.41
2733 2904 7.040823 ACAAGCTCATAAAAATAGCTATCTGCC 60.041 37.037 6.72 0.00 45.61 4.85
3105 3276 5.221126 GCAAATTCTTGTGAGGTTGAGACTT 60.221 40.000 0.00 0.00 34.79 3.01
3400 3577 0.178995 TGCAGGTTCATCAAGCCACA 60.179 50.000 0.00 0.00 0.00 4.17
3594 3771 3.005897 TCTGAAGACCCTGAAGAAAGACG 59.994 47.826 0.00 0.00 0.00 4.18
3821 3998 4.041567 TGAAATACTTGAGAGCAGGGAACA 59.958 41.667 0.00 0.00 0.00 3.18
3872 4049 1.340405 GCAATGCTCCTTCCTGGAAGA 60.340 52.381 32.80 19.32 45.63 2.87
4271 4448 3.810896 GCTTTTAGCGCGGGGGTG 61.811 66.667 8.83 0.00 0.00 4.61
4365 4550 6.344500 AGCATCAGGAAGTAAATGTGAGTAG 58.656 40.000 0.00 0.00 0.00 2.57
4407 4592 5.430886 CATGATCTGATTTGTCACCCTGTA 58.569 41.667 0.00 0.00 0.00 2.74
4465 4650 3.384789 AGGCATAGTCAGCTTTGTATCGA 59.615 43.478 0.00 0.00 0.00 3.59
4521 4706 4.753610 TGCTTCAGCTGCAATACTATCATC 59.246 41.667 9.47 0.00 42.66 2.92
4528 4713 2.079158 TCACTGCTTCAGCTGCAATAC 58.921 47.619 9.47 0.00 42.72 1.89
4577 4762 3.265791 AGCTGACGATGATTTTGGACTC 58.734 45.455 0.00 0.00 0.00 3.36
4589 4774 2.314246 TGAGATGATGGAGCTGACGAT 58.686 47.619 0.00 0.00 0.00 3.73
4673 4858 2.611518 CTTGGCGTAAGAGAAGGACTG 58.388 52.381 0.00 0.00 38.76 3.51
4781 4966 2.993863 AGGAAGTGGTAAGGGGTGAATT 59.006 45.455 0.00 0.00 0.00 2.17
4782 4967 2.576648 GAGGAAGTGGTAAGGGGTGAAT 59.423 50.000 0.00 0.00 0.00 2.57
4951 5139 9.166173 GCTGCAATGATATATGGATTACACTTA 57.834 33.333 0.00 0.00 0.00 2.24
5010 5200 6.068010 TCCAGTATGCCTACATTTAAATGGG 58.932 40.000 27.43 21.14 37.74 4.00
5341 6682 1.369321 GGCTCTCCTATCCTTGGCG 59.631 63.158 0.00 0.00 0.00 5.69
5437 6778 2.014010 TTGGAAGCCAAGGCAAGAAT 57.986 45.000 14.40 0.00 44.88 2.40
5490 6833 9.941325 TCTATTGGCAAATTTGATGTTACATTT 57.059 25.926 22.31 4.33 0.00 2.32
5642 6986 1.486211 ATCCTCAGGAAGGTGGTACG 58.514 55.000 0.00 0.00 46.32 3.67
5684 7028 1.726853 AGCCAAGTACGAGTGATTGC 58.273 50.000 0.00 0.00 0.00 3.56
5721 7066 7.772332 AGGTATCTTGAAAACTTGCTATACG 57.228 36.000 0.00 0.00 0.00 3.06
6130 7475 4.211920 GGCAAATACTTAACTATGCCCCA 58.788 43.478 3.25 0.00 45.84 4.96
6136 7481 5.454966 CCCAAGGGGCAAATACTTAACTAT 58.545 41.667 0.00 0.00 35.35 2.12
6254 7599 3.882888 AGCTTTTTGTGATCGAGACCAAA 59.117 39.130 0.00 0.00 0.00 3.28
6257 7602 5.607119 TTTAGCTTTTTGTGATCGAGACC 57.393 39.130 0.00 0.00 0.00 3.85
6341 7686 3.412981 TGAAATGTTGTTGTGTGGACG 57.587 42.857 0.00 0.00 0.00 4.79
6369 7714 4.221262 ACAGCACAAATGGCAGTCATAAAT 59.779 37.500 0.00 0.00 34.44 1.40
6370 7715 3.573538 ACAGCACAAATGGCAGTCATAAA 59.426 39.130 0.00 0.00 34.44 1.40
6371 7716 3.156293 ACAGCACAAATGGCAGTCATAA 58.844 40.909 0.00 0.00 34.44 1.90
6372 7717 2.749076 GACAGCACAAATGGCAGTCATA 59.251 45.455 5.26 0.00 44.30 2.15
6373 7718 1.542915 GACAGCACAAATGGCAGTCAT 59.457 47.619 5.26 0.00 44.30 3.06
6374 7719 0.953727 GACAGCACAAATGGCAGTCA 59.046 50.000 5.26 0.00 44.30 3.41
6375 7720 0.242017 GGACAGCACAAATGGCAGTC 59.758 55.000 0.00 0.00 44.21 3.51
6376 7721 0.178981 AGGACAGCACAAATGGCAGT 60.179 50.000 0.00 0.00 33.42 4.40
6377 7722 0.242825 CAGGACAGCACAAATGGCAG 59.757 55.000 0.00 0.00 0.00 4.85
6378 7723 1.180456 CCAGGACAGCACAAATGGCA 61.180 55.000 0.00 0.00 0.00 4.92
6379 7724 0.895100 TCCAGGACAGCACAAATGGC 60.895 55.000 0.00 0.00 0.00 4.40
6380 7725 1.843368 ATCCAGGACAGCACAAATGG 58.157 50.000 0.00 0.00 0.00 3.16
6381 7726 4.202080 CCAATATCCAGGACAGCACAAATG 60.202 45.833 0.00 0.00 0.00 2.32
6382 7727 3.956199 CCAATATCCAGGACAGCACAAAT 59.044 43.478 0.00 0.00 0.00 2.32
6383 7728 3.355378 CCAATATCCAGGACAGCACAAA 58.645 45.455 0.00 0.00 0.00 2.83
6384 7729 2.945440 GCCAATATCCAGGACAGCACAA 60.945 50.000 0.00 0.00 0.00 3.33
6385 7730 1.408683 GCCAATATCCAGGACAGCACA 60.409 52.381 0.00 0.00 0.00 4.57
6386 7731 1.133976 AGCCAATATCCAGGACAGCAC 60.134 52.381 0.00 0.00 0.00 4.40
6387 7732 1.216064 AGCCAATATCCAGGACAGCA 58.784 50.000 0.00 0.00 0.00 4.41
6388 7733 2.225467 GAAGCCAATATCCAGGACAGC 58.775 52.381 0.00 0.00 0.00 4.40
6389 7734 3.565764 TGAAGCCAATATCCAGGACAG 57.434 47.619 0.00 0.00 0.00 3.51
6390 7735 4.524802 ATTGAAGCCAATATCCAGGACA 57.475 40.909 0.00 0.00 40.95 4.02
6391 7736 5.136105 AGAATTGAAGCCAATATCCAGGAC 58.864 41.667 0.00 0.00 41.84 3.85
6392 7737 5.393068 AGAATTGAAGCCAATATCCAGGA 57.607 39.130 0.00 0.00 41.84 3.86
6393 7738 6.475596 AAAGAATTGAAGCCAATATCCAGG 57.524 37.500 0.00 0.00 41.84 4.45
6394 7739 7.144000 GCTAAAGAATTGAAGCCAATATCCAG 58.856 38.462 0.00 0.00 41.84 3.86
6395 7740 7.042797 GCTAAAGAATTGAAGCCAATATCCA 57.957 36.000 0.00 0.00 41.84 3.41
6404 7749 2.747446 TGGACGGCTAAAGAATTGAAGC 59.253 45.455 0.00 0.00 37.23 3.86
6405 7750 6.260936 ACATATGGACGGCTAAAGAATTGAAG 59.739 38.462 7.80 0.00 0.00 3.02
6406 7751 6.119536 ACATATGGACGGCTAAAGAATTGAA 58.880 36.000 7.80 0.00 0.00 2.69
6407 7752 5.680619 ACATATGGACGGCTAAAGAATTGA 58.319 37.500 7.80 0.00 0.00 2.57
6408 7753 6.706270 AGTACATATGGACGGCTAAAGAATTG 59.294 38.462 12.50 0.00 0.00 2.32
6409 7754 6.706270 CAGTACATATGGACGGCTAAAGAATT 59.294 38.462 12.50 0.00 0.00 2.17
6410 7755 6.183360 ACAGTACATATGGACGGCTAAAGAAT 60.183 38.462 17.10 0.00 0.00 2.40
6411 7756 5.128171 ACAGTACATATGGACGGCTAAAGAA 59.872 40.000 17.10 0.00 0.00 2.52
6412 7757 4.647853 ACAGTACATATGGACGGCTAAAGA 59.352 41.667 17.10 0.00 0.00 2.52
6413 7758 4.945246 ACAGTACATATGGACGGCTAAAG 58.055 43.478 17.10 3.87 0.00 1.85
6414 7759 5.347620 AACAGTACATATGGACGGCTAAA 57.652 39.130 17.10 0.00 0.00 1.85
6415 7760 5.347620 AAACAGTACATATGGACGGCTAA 57.652 39.130 17.10 0.00 0.00 3.09
6416 7761 6.468333 TTAAACAGTACATATGGACGGCTA 57.532 37.500 17.10 7.21 0.00 3.93
6417 7762 3.906720 AAACAGTACATATGGACGGCT 57.093 42.857 17.10 3.20 0.00 5.52
6418 7763 6.613755 AATTAAACAGTACATATGGACGGC 57.386 37.500 17.10 0.00 0.00 5.68
6419 7764 9.925268 GTAAAATTAAACAGTACATATGGACGG 57.075 33.333 15.78 15.78 0.00 4.79
6445 7790 9.499479 ACCTAGCTAAGATGAAACATATCAATG 57.501 33.333 0.00 0.00 39.17 2.82
6447 7792 9.330063 CAACCTAGCTAAGATGAAACATATCAA 57.670 33.333 0.00 0.00 32.06 2.57
6448 7793 8.704668 TCAACCTAGCTAAGATGAAACATATCA 58.295 33.333 0.11 0.00 0.00 2.15
6449 7794 9.717942 ATCAACCTAGCTAAGATGAAACATATC 57.282 33.333 6.42 0.00 0.00 1.63
6625 7970 4.925054 TCGAAGACAAGTAATTTGGTACGG 59.075 41.667 0.00 0.00 41.25 4.02
6629 7974 8.041323 AGACATATCGAAGACAAGTAATTTGGT 58.959 33.333 0.00 0.00 42.51 3.67
6808 8153 8.675705 TTTACCACATTCATATACATGTCTGG 57.324 34.615 0.00 0.00 30.90 3.86
7004 8349 1.001633 ACACAGGTGGTCGGATTGTAC 59.998 52.381 4.24 0.00 34.19 2.90
7033 8378 2.032377 GGAACTCAAATTCGTGTTCGCA 60.032 45.455 5.51 0.00 39.27 5.10
7111 8456 6.620678 GCAGAAGTGAATACCAGCATAAAAA 58.379 36.000 0.00 0.00 0.00 1.94
7167 8525 5.546526 CTCCTTTGATATCCCTGTAAGAGC 58.453 45.833 0.00 0.00 34.07 4.09
7196 8554 3.687698 ACACCGTTACCATCAATTAGCAC 59.312 43.478 0.00 0.00 0.00 4.40
7343 8701 4.260132 GCATCATCTTGACGCACTTCTAAG 60.260 45.833 0.00 0.00 35.40 2.18
7351 8709 2.351641 GGTTTTGCATCATCTTGACGCA 60.352 45.455 0.00 0.00 44.30 5.24
7376 8734 0.690762 GTTCTTGTGGGGTGGAGCTA 59.309 55.000 0.00 0.00 0.00 3.32
7378 8736 1.966451 CGTTCTTGTGGGGTGGAGC 60.966 63.158 0.00 0.00 0.00 4.70
7448 8807 2.661566 CGAGTGCAGCACAGTTCGG 61.662 63.158 27.35 8.99 36.74 4.30
7450 8809 2.320587 CCCGAGTGCAGCACAGTTC 61.321 63.158 27.35 14.94 36.74 3.01
7483 8842 1.771255 ACAAAGCCTCCTGAACTCACT 59.229 47.619 0.00 0.00 0.00 3.41
7536 8902 1.617850 CAAAACTATGGTTGCCAGCCA 59.382 47.619 1.66 1.66 36.75 4.75
7627 8993 0.463620 TGTTTTCAGTGGGGCTTTGC 59.536 50.000 0.00 0.00 0.00 3.68
7779 9145 4.164221 TCCTGCTCCCTAAAAGTTATCTGG 59.836 45.833 0.00 0.00 0.00 3.86
7837 9203 4.393062 AGATGAAACAATCTTGCACCTACG 59.607 41.667 0.00 0.00 32.88 3.51
7908 9274 3.403613 TTTTCGCATGATTGACATCGG 57.596 42.857 0.00 0.00 37.07 4.18
7909 9275 6.398205 GCAATATTTTCGCATGATTGACATCG 60.398 38.462 0.00 0.00 37.07 3.84
7910 9276 6.418523 TGCAATATTTTCGCATGATTGACATC 59.581 34.615 0.00 0.00 37.07 3.06
7911 9277 6.199531 GTGCAATATTTTCGCATGATTGACAT 59.800 34.615 0.00 0.00 38.07 3.06
7912 9278 5.515982 GTGCAATATTTTCGCATGATTGACA 59.484 36.000 0.00 0.00 38.07 3.58
8079 9447 2.610727 GCTCCACTAGAAAACGCTGTCT 60.611 50.000 0.00 0.00 0.00 3.41
8085 9453 2.069273 CTGGTGCTCCACTAGAAAACG 58.931 52.381 2.64 0.00 44.01 3.60
8176 9544 4.338400 GCCAAAAGTCTATATGGGTTGGAC 59.662 45.833 12.56 0.00 36.90 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.