Multiple sequence alignment - TraesCS4B01G092400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G092400 chr4B 100.000 4018 0 0 1 4018 95219680 95215663 0.000000e+00 7420.0
1 TraesCS4B01G092400 chr4B 83.704 1350 154 33 1525 2819 95366088 95367426 0.000000e+00 1214.0
2 TraesCS4B01G092400 chr4B 80.815 1595 229 48 995 2531 95109492 95107917 0.000000e+00 1179.0
3 TraesCS4B01G092400 chr4B 84.000 1225 130 32 1527 2695 95318160 95316946 0.000000e+00 1116.0
4 TraesCS4B01G092400 chr4B 94.507 619 31 3 3401 4018 84542514 84541898 0.000000e+00 952.0
5 TraesCS4B01G092400 chr4B 83.924 423 49 11 2819 3238 95367520 95367926 1.750000e-103 387.0
6 TraesCS4B01G092400 chr4B 85.714 301 15 12 530 804 95365069 95365367 3.930000e-75 292.0
7 TraesCS4B01G092400 chr4B 85.522 297 20 9 530 804 95319182 95318887 5.080000e-74 289.0
8 TraesCS4B01G092400 chr4B 88.511 235 19 4 530 763 95109821 95109594 1.100000e-70 278.0
9 TraesCS4B01G092400 chr4B 77.695 269 40 10 2554 2819 95107800 95107549 3.240000e-31 147.0
10 TraesCS4B01G092400 chr4A 92.479 2061 99 25 783 2819 531311562 531313590 0.000000e+00 2896.0
11 TraesCS4B01G092400 chr4A 83.395 1349 157 34 1527 2819 531247688 531249025 0.000000e+00 1188.0
12 TraesCS4B01G092400 chr4A 80.405 1628 238 43 1251 2819 531326125 531327730 0.000000e+00 1164.0
13 TraesCS4B01G092400 chr4A 91.216 592 48 3 2813 3400 531313671 531314262 0.000000e+00 802.0
14 TraesCS4B01G092400 chr4A 94.118 408 14 7 288 689 531303421 531303824 2.650000e-171 612.0
15 TraesCS4B01G092400 chr4A 90.155 193 14 3 614 804 531246772 531246961 3.100000e-61 246.0
16 TraesCS4B01G092400 chr4A 83.032 277 36 7 530 804 531325580 531325847 1.440000e-59 241.0
17 TraesCS4B01G092400 chr4A 80.519 308 53 4 2824 3127 531327826 531328130 3.120000e-56 230.0
18 TraesCS4B01G092400 chr4A 86.631 187 24 1 995 1181 531325920 531326105 5.260000e-49 206.0
19 TraesCS4B01G092400 chr4A 85.455 110 4 7 530 628 531246647 531246755 1.980000e-18 104.0
20 TraesCS4B01G092400 chr4A 97.297 37 0 1 1307 1343 531311504 531311539 1.210000e-05 62.1
21 TraesCS4B01G092400 chr4D 92.610 1935 106 15 886 2819 64617508 64615610 0.000000e+00 2747.0
22 TraesCS4B01G092400 chr4D 81.054 987 144 25 914 1872 64606261 64605290 0.000000e+00 747.0
23 TraesCS4B01G092400 chr4D 89.845 581 33 2 2822 3400 64615520 64614964 0.000000e+00 723.0
24 TraesCS4B01G092400 chr4D 79.900 1000 125 41 1876 2814 64605205 64604221 0.000000e+00 664.0
25 TraesCS4B01G092400 chr4D 84.842 442 51 9 2824 3258 64604130 64603698 7.980000e-117 431.0
26 TraesCS4B01G092400 chr3B 95.617 616 20 7 3401 4013 805201570 805200959 0.000000e+00 981.0
27 TraesCS4B01G092400 chr3B 94.677 620 29 4 3401 4018 777725263 777725880 0.000000e+00 959.0
28 TraesCS4B01G092400 chr3B 94.355 620 30 4 3401 4018 804814551 804815167 0.000000e+00 946.0
29 TraesCS4B01G092400 chr3B 94.042 621 33 4 3401 4018 16884330 16883711 0.000000e+00 939.0
30 TraesCS4B01G092400 chr3B 91.250 80 4 3 805 884 261789761 261789837 5.490000e-19 106.0
31 TraesCS4B01G092400 chr5B 95.000 620 24 7 3401 4018 599405672 599405058 0.000000e+00 966.0
32 TraesCS4B01G092400 chr5B 92.958 71 5 0 810 880 712861031 712860961 1.980000e-18 104.0
33 TraesCS4B01G092400 chr5B 100.000 35 0 0 187 221 660191781 660191815 9.320000e-07 65.8
34 TraesCS4B01G092400 chr6B 94.839 620 27 4 3401 4018 153107967 153107351 0.000000e+00 963.0
35 TraesCS4B01G092400 chr1B 94.686 621 29 4 3400 4018 93136117 93136735 0.000000e+00 961.0
36 TraesCS4B01G092400 chr1B 94.309 615 29 5 3401 4010 197871886 197871273 0.000000e+00 937.0
37 TraesCS4B01G092400 chr5A 95.714 70 3 0 809 878 624782048 624782117 3.280000e-21 113.0
38 TraesCS4B01G092400 chr5A 95.714 70 1 1 809 878 422040356 422040423 1.180000e-20 111.0
39 TraesCS4B01G092400 chr5A 92.500 80 3 3 802 878 561531490 561531569 1.180000e-20 111.0
40 TraesCS4B01G092400 chr2D 76.442 208 48 1 1641 1847 11061316 11061109 1.180000e-20 111.0
41 TraesCS4B01G092400 chr1A 94.286 70 4 0 809 878 583907868 583907799 1.530000e-19 108.0
42 TraesCS4B01G092400 chr1A 93.056 72 4 1 807 878 29006273 29006203 1.980000e-18 104.0
43 TraesCS4B01G092400 chr6D 94.286 70 3 1 809 878 103006123 103006191 5.490000e-19 106.0
44 TraesCS4B01G092400 chr3D 91.139 79 3 2 804 882 81695010 81695084 1.980000e-18 104.0
45 TraesCS4B01G092400 chrUn 92.105 38 2 1 185 221 15316138 15316101 7.000000e-03 52.8
46 TraesCS4B01G092400 chrUn 100.000 28 0 0 194 221 247970202 247970229 7.000000e-03 52.8
47 TraesCS4B01G092400 chr5D 96.875 32 0 1 193 223 121086609 121086578 7.000000e-03 52.8
48 TraesCS4B01G092400 chr2A 92.105 38 2 1 185 221 734911650 734911687 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G092400 chr4B 95215663 95219680 4017 True 7420.000000 7420 100.000000 1 4018 1 chr4B.!!$R2 4017
1 TraesCS4B01G092400 chr4B 84541898 84542514 616 True 952.000000 952 94.507000 3401 4018 1 chr4B.!!$R1 617
2 TraesCS4B01G092400 chr4B 95316946 95319182 2236 True 702.500000 1116 84.761000 530 2695 2 chr4B.!!$R4 2165
3 TraesCS4B01G092400 chr4B 95365069 95367926 2857 False 631.000000 1214 84.447333 530 3238 3 chr4B.!!$F1 2708
4 TraesCS4B01G092400 chr4B 95107549 95109821 2272 True 534.666667 1179 82.340333 530 2819 3 chr4B.!!$R3 2289
5 TraesCS4B01G092400 chr4A 531311504 531314262 2758 False 1253.366667 2896 93.664000 783 3400 3 chr4A.!!$F3 2617
6 TraesCS4B01G092400 chr4A 531246647 531249025 2378 False 512.666667 1188 86.335000 530 2819 3 chr4A.!!$F2 2289
7 TraesCS4B01G092400 chr4A 531325580 531328130 2550 False 460.250000 1164 82.646750 530 3127 4 chr4A.!!$F4 2597
8 TraesCS4B01G092400 chr4D 64614964 64617508 2544 True 1735.000000 2747 91.227500 886 3400 2 chr4D.!!$R2 2514
9 TraesCS4B01G092400 chr4D 64603698 64606261 2563 True 614.000000 747 81.932000 914 3258 3 chr4D.!!$R1 2344
10 TraesCS4B01G092400 chr3B 805200959 805201570 611 True 981.000000 981 95.617000 3401 4013 1 chr3B.!!$R2 612
11 TraesCS4B01G092400 chr3B 777725263 777725880 617 False 959.000000 959 94.677000 3401 4018 1 chr3B.!!$F2 617
12 TraesCS4B01G092400 chr3B 804814551 804815167 616 False 946.000000 946 94.355000 3401 4018 1 chr3B.!!$F3 617
13 TraesCS4B01G092400 chr3B 16883711 16884330 619 True 939.000000 939 94.042000 3401 4018 1 chr3B.!!$R1 617
14 TraesCS4B01G092400 chr5B 599405058 599405672 614 True 966.000000 966 95.000000 3401 4018 1 chr5B.!!$R1 617
15 TraesCS4B01G092400 chr6B 153107351 153107967 616 True 963.000000 963 94.839000 3401 4018 1 chr6B.!!$R1 617
16 TraesCS4B01G092400 chr1B 93136117 93136735 618 False 961.000000 961 94.686000 3400 4018 1 chr1B.!!$F1 618
17 TraesCS4B01G092400 chr1B 197871273 197871886 613 True 937.000000 937 94.309000 3401 4010 1 chr1B.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.042581 TGGAGGTGCTCATAGGGACA 59.957 55.0 0.0 0.0 31.08 4.02 F
240 241 0.244450 TAAACTAGCCCACACCGACG 59.756 55.0 0.0 0.0 0.00 5.12 F
784 857 0.249398 AGATGACCGTAGCACAACCC 59.751 55.0 0.0 0.0 0.00 4.11 F
1492 1659 1.453155 CCTCTTTGGTATGCAACGCT 58.547 50.0 0.0 0.0 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 1362 3.197766 TGTTCAACCTCACAGACACTTCT 59.802 43.478 0.0 0.0 0.00 2.85 R
2190 2555 2.128771 ATGGACGCTATGTGCCTTTT 57.871 45.000 0.0 0.0 38.31 2.27 R
2460 2867 2.414161 GCGAACAATTTCAGTGGTAGGC 60.414 50.000 0.0 0.0 0.00 3.93 R
3360 3988 0.038310 AAGGAGCCTTACCAAGCCAC 59.962 55.000 0.0 0.0 34.05 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.681319 TACCGCCTTACCCTATAGCA 57.319 50.000 0.00 0.00 0.00 3.49
22 23 2.025636 ACCGCCTTACCCTATAGCAT 57.974 50.000 0.00 0.00 0.00 3.79
23 24 2.335933 ACCGCCTTACCCTATAGCATT 58.664 47.619 0.00 0.00 0.00 3.56
25 26 2.607187 CGCCTTACCCTATAGCATTCG 58.393 52.381 0.00 0.00 0.00 3.34
26 27 2.347731 GCCTTACCCTATAGCATTCGC 58.652 52.381 0.00 0.00 38.99 4.70
42 43 5.898225 GCATTCGCTTCTTTCTTCTTTTTG 58.102 37.500 0.00 0.00 34.30 2.44
43 44 5.611197 GCATTCGCTTCTTTCTTCTTTTTGC 60.611 40.000 0.00 0.00 34.30 3.68
44 45 3.964909 TCGCTTCTTTCTTCTTTTTGCC 58.035 40.909 0.00 0.00 0.00 4.52
46 47 4.111916 CGCTTCTTTCTTCTTTTTGCCAA 58.888 39.130 0.00 0.00 0.00 4.52
48 49 5.063312 CGCTTCTTTCTTCTTTTTGCCAAAA 59.937 36.000 0.00 0.00 0.00 2.44
49 50 6.402011 CGCTTCTTTCTTCTTTTTGCCAAAAA 60.402 34.615 14.19 14.19 37.99 1.94
57 58 2.279582 TTTTGCCAAAAAGAACGCGA 57.720 40.000 15.93 0.00 31.61 5.87
58 59 2.500509 TTTGCCAAAAAGAACGCGAT 57.499 40.000 15.93 0.00 0.00 4.58
59 60 2.500509 TTGCCAAAAAGAACGCGATT 57.499 40.000 15.93 2.74 0.00 3.34
61 62 1.335182 TGCCAAAAAGAACGCGATTCA 59.665 42.857 15.93 0.00 40.09 2.57
62 63 2.223595 TGCCAAAAAGAACGCGATTCAA 60.224 40.909 15.93 0.00 40.09 2.69
63 64 2.405025 GCCAAAAAGAACGCGATTCAAG 59.595 45.455 15.93 3.00 40.09 3.02
64 65 3.628017 CCAAAAAGAACGCGATTCAAGT 58.372 40.909 15.93 0.11 40.09 3.16
65 66 4.778904 CCAAAAAGAACGCGATTCAAGTA 58.221 39.130 15.93 0.00 40.09 2.24
66 67 4.611366 CCAAAAAGAACGCGATTCAAGTAC 59.389 41.667 15.93 0.00 40.09 2.73
67 68 5.201910 CAAAAAGAACGCGATTCAAGTACA 58.798 37.500 15.93 0.00 40.09 2.90
68 69 4.647291 AAAGAACGCGATTCAAGTACAG 57.353 40.909 15.93 0.00 40.09 2.74
69 70 2.607187 AGAACGCGATTCAAGTACAGG 58.393 47.619 15.93 0.00 40.09 4.00
70 71 2.230508 AGAACGCGATTCAAGTACAGGA 59.769 45.455 15.93 0.00 40.09 3.86
71 72 2.736144 ACGCGATTCAAGTACAGGAA 57.264 45.000 15.93 0.00 0.00 3.36
72 73 3.034721 ACGCGATTCAAGTACAGGAAA 57.965 42.857 15.93 0.00 0.00 3.13
73 74 2.735134 ACGCGATTCAAGTACAGGAAAC 59.265 45.455 15.93 0.00 0.00 2.78
74 75 2.734606 CGCGATTCAAGTACAGGAAACA 59.265 45.455 0.00 0.00 0.00 2.83
75 76 3.423123 CGCGATTCAAGTACAGGAAACAC 60.423 47.826 0.00 0.00 0.00 3.32
76 77 3.496884 GCGATTCAAGTACAGGAAACACA 59.503 43.478 0.00 0.00 0.00 3.72
77 78 4.610680 GCGATTCAAGTACAGGAAACACAC 60.611 45.833 0.00 0.00 0.00 3.82
78 79 4.750098 CGATTCAAGTACAGGAAACACACT 59.250 41.667 0.00 0.00 0.00 3.55
79 80 5.924254 CGATTCAAGTACAGGAAACACACTA 59.076 40.000 0.00 0.00 0.00 2.74
80 81 6.422701 CGATTCAAGTACAGGAAACACACTAA 59.577 38.462 0.00 0.00 0.00 2.24
81 82 7.042321 CGATTCAAGTACAGGAAACACACTAAA 60.042 37.037 0.00 0.00 0.00 1.85
82 83 8.691661 ATTCAAGTACAGGAAACACACTAAAT 57.308 30.769 0.00 0.00 0.00 1.40
83 84 7.724305 TCAAGTACAGGAAACACACTAAATC 57.276 36.000 0.00 0.00 0.00 2.17
84 85 6.708949 TCAAGTACAGGAAACACACTAAATCC 59.291 38.462 0.00 0.00 0.00 3.01
85 86 5.235516 AGTACAGGAAACACACTAAATCCG 58.764 41.667 0.00 0.00 35.31 4.18
86 87 4.081322 ACAGGAAACACACTAAATCCGT 57.919 40.909 0.00 0.00 35.31 4.69
87 88 4.457466 ACAGGAAACACACTAAATCCGTT 58.543 39.130 0.00 0.00 35.31 4.44
88 89 4.274950 ACAGGAAACACACTAAATCCGTTG 59.725 41.667 0.00 0.00 35.31 4.10
89 90 4.513692 CAGGAAACACACTAAATCCGTTGA 59.486 41.667 0.00 0.00 35.31 3.18
90 91 4.514066 AGGAAACACACTAAATCCGTTGAC 59.486 41.667 0.00 0.00 35.31 3.18
91 92 4.514066 GGAAACACACTAAATCCGTTGACT 59.486 41.667 0.00 0.00 0.00 3.41
92 93 5.008316 GGAAACACACTAAATCCGTTGACTT 59.992 40.000 0.00 0.00 0.00 3.01
93 94 5.668558 AACACACTAAATCCGTTGACTTC 57.331 39.130 0.00 0.00 0.00 3.01
94 95 4.699637 ACACACTAAATCCGTTGACTTCA 58.300 39.130 0.00 0.00 0.00 3.02
95 96 5.120399 ACACACTAAATCCGTTGACTTCAA 58.880 37.500 0.00 0.00 0.00 2.69
96 97 5.236478 ACACACTAAATCCGTTGACTTCAAG 59.764 40.000 0.00 0.00 36.39 3.02
97 98 5.236478 CACACTAAATCCGTTGACTTCAAGT 59.764 40.000 0.00 0.00 36.39 3.16
98 99 5.820947 ACACTAAATCCGTTGACTTCAAGTT 59.179 36.000 0.00 0.00 36.39 2.66
99 100 6.136071 CACTAAATCCGTTGACTTCAAGTTG 58.864 40.000 0.00 0.00 36.39 3.16
100 101 5.820947 ACTAAATCCGTTGACTTCAAGTTGT 59.179 36.000 2.11 0.00 36.39 3.32
101 102 5.576447 AAATCCGTTGACTTCAAGTTGTT 57.424 34.783 2.11 0.00 36.39 2.83
102 103 4.552166 ATCCGTTGACTTCAAGTTGTTG 57.448 40.909 2.11 0.00 36.39 3.33
103 104 3.340034 TCCGTTGACTTCAAGTTGTTGT 58.660 40.909 2.11 3.14 36.39 3.32
104 105 4.505808 TCCGTTGACTTCAAGTTGTTGTA 58.494 39.130 2.11 0.00 36.39 2.41
105 106 5.120399 TCCGTTGACTTCAAGTTGTTGTAT 58.880 37.500 2.11 0.00 36.39 2.29
106 107 5.587043 TCCGTTGACTTCAAGTTGTTGTATT 59.413 36.000 2.11 0.00 36.39 1.89
107 108 5.681105 CCGTTGACTTCAAGTTGTTGTATTG 59.319 40.000 2.11 0.00 36.39 1.90
108 109 6.255215 CGTTGACTTCAAGTTGTTGTATTGT 58.745 36.000 2.11 0.00 36.39 2.71
109 110 6.410914 CGTTGACTTCAAGTTGTTGTATTGTC 59.589 38.462 2.11 3.51 36.39 3.18
110 111 7.472543 GTTGACTTCAAGTTGTTGTATTGTCT 58.527 34.615 2.11 0.00 36.39 3.41
111 112 7.624360 TGACTTCAAGTTGTTGTATTGTCTT 57.376 32.000 2.11 0.00 34.98 3.01
112 113 8.725405 TGACTTCAAGTTGTTGTATTGTCTTA 57.275 30.769 2.11 0.00 34.98 2.10
113 114 8.826710 TGACTTCAAGTTGTTGTATTGTCTTAG 58.173 33.333 2.11 0.00 34.98 2.18
114 115 8.732746 ACTTCAAGTTGTTGTATTGTCTTAGT 57.267 30.769 2.11 0.00 34.98 2.24
115 116 9.826574 ACTTCAAGTTGTTGTATTGTCTTAGTA 57.173 29.630 2.11 0.00 34.98 1.82
124 125 9.226606 TGTTGTATTGTCTTAGTATTTTGGAGG 57.773 33.333 0.00 0.00 0.00 4.30
125 126 9.227777 GTTGTATTGTCTTAGTATTTTGGAGGT 57.772 33.333 0.00 0.00 0.00 3.85
126 127 8.786826 TGTATTGTCTTAGTATTTTGGAGGTG 57.213 34.615 0.00 0.00 0.00 4.00
127 128 6.759497 ATTGTCTTAGTATTTTGGAGGTGC 57.241 37.500 0.00 0.00 0.00 5.01
128 129 5.499004 TGTCTTAGTATTTTGGAGGTGCT 57.501 39.130 0.00 0.00 0.00 4.40
129 130 5.488341 TGTCTTAGTATTTTGGAGGTGCTC 58.512 41.667 0.00 0.00 0.00 4.26
130 131 5.012664 TGTCTTAGTATTTTGGAGGTGCTCA 59.987 40.000 0.00 0.00 31.08 4.26
131 132 6.116126 GTCTTAGTATTTTGGAGGTGCTCAT 58.884 40.000 0.00 0.00 31.08 2.90
132 133 7.093068 TGTCTTAGTATTTTGGAGGTGCTCATA 60.093 37.037 0.00 0.00 31.08 2.15
133 134 7.439655 GTCTTAGTATTTTGGAGGTGCTCATAG 59.560 40.741 0.00 0.00 31.08 2.23
134 135 5.041191 AGTATTTTGGAGGTGCTCATAGG 57.959 43.478 0.00 0.00 31.08 2.57
135 136 2.806945 TTTTGGAGGTGCTCATAGGG 57.193 50.000 0.00 0.00 31.08 3.53
136 137 1.965414 TTTGGAGGTGCTCATAGGGA 58.035 50.000 0.00 0.00 31.08 4.20
137 138 1.204146 TTGGAGGTGCTCATAGGGAC 58.796 55.000 0.00 0.00 31.08 4.46
138 139 0.042581 TGGAGGTGCTCATAGGGACA 59.957 55.000 0.00 0.00 31.08 4.02
139 140 0.755686 GGAGGTGCTCATAGGGACAG 59.244 60.000 0.00 0.00 31.08 3.51
140 141 1.689575 GGAGGTGCTCATAGGGACAGA 60.690 57.143 0.00 0.00 31.08 3.41
141 142 2.111384 GAGGTGCTCATAGGGACAGAA 58.889 52.381 0.00 0.00 0.00 3.02
142 143 2.501723 GAGGTGCTCATAGGGACAGAAA 59.498 50.000 0.00 0.00 0.00 2.52
143 144 3.118531 AGGTGCTCATAGGGACAGAAAT 58.881 45.455 0.00 0.00 0.00 2.17
144 145 4.298626 AGGTGCTCATAGGGACAGAAATA 58.701 43.478 0.00 0.00 0.00 1.40
145 146 4.910304 AGGTGCTCATAGGGACAGAAATAT 59.090 41.667 0.00 0.00 0.00 1.28
146 147 4.999950 GGTGCTCATAGGGACAGAAATATG 59.000 45.833 0.00 0.00 0.00 1.78
147 148 5.221722 GGTGCTCATAGGGACAGAAATATGA 60.222 44.000 0.00 0.00 34.40 2.15
148 149 6.471146 GTGCTCATAGGGACAGAAATATGAT 58.529 40.000 0.00 0.00 34.91 2.45
149 150 6.370994 GTGCTCATAGGGACAGAAATATGATG 59.629 42.308 0.00 0.00 34.91 3.07
150 151 6.043590 TGCTCATAGGGACAGAAATATGATGT 59.956 38.462 0.00 0.00 34.91 3.06
151 152 6.370994 GCTCATAGGGACAGAAATATGATGTG 59.629 42.308 0.00 0.00 34.91 3.21
152 153 6.233434 TCATAGGGACAGAAATATGATGTGC 58.767 40.000 0.00 0.00 31.43 4.57
155 156 4.825546 GGACAGAAATATGATGTGCCTG 57.174 45.455 0.00 0.00 29.96 4.85
156 157 4.454678 GGACAGAAATATGATGTGCCTGA 58.545 43.478 0.00 0.00 29.96 3.86
157 158 4.514441 GGACAGAAATATGATGTGCCTGAG 59.486 45.833 0.00 0.00 29.96 3.35
158 159 5.108187 ACAGAAATATGATGTGCCTGAGT 57.892 39.130 0.00 0.00 0.00 3.41
159 160 4.880120 ACAGAAATATGATGTGCCTGAGTG 59.120 41.667 0.00 0.00 0.00 3.51
160 161 4.880120 CAGAAATATGATGTGCCTGAGTGT 59.120 41.667 0.00 0.00 0.00 3.55
161 162 4.880120 AGAAATATGATGTGCCTGAGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
162 163 3.920231 ATATGATGTGCCTGAGTGTGT 57.080 42.857 0.00 0.00 0.00 3.72
163 164 2.574006 ATGATGTGCCTGAGTGTGTT 57.426 45.000 0.00 0.00 0.00 3.32
164 165 2.346766 TGATGTGCCTGAGTGTGTTT 57.653 45.000 0.00 0.00 0.00 2.83
165 166 3.483808 TGATGTGCCTGAGTGTGTTTA 57.516 42.857 0.00 0.00 0.00 2.01
166 167 4.019792 TGATGTGCCTGAGTGTGTTTAT 57.980 40.909 0.00 0.00 0.00 1.40
167 168 5.159273 TGATGTGCCTGAGTGTGTTTATA 57.841 39.130 0.00 0.00 0.00 0.98
168 169 5.744171 TGATGTGCCTGAGTGTGTTTATAT 58.256 37.500 0.00 0.00 0.00 0.86
169 170 5.585844 TGATGTGCCTGAGTGTGTTTATATG 59.414 40.000 0.00 0.00 0.00 1.78
170 171 4.260985 TGTGCCTGAGTGTGTTTATATGG 58.739 43.478 0.00 0.00 0.00 2.74
171 172 4.019771 TGTGCCTGAGTGTGTTTATATGGA 60.020 41.667 0.00 0.00 0.00 3.41
172 173 5.126067 GTGCCTGAGTGTGTTTATATGGAT 58.874 41.667 0.00 0.00 0.00 3.41
173 174 5.008019 GTGCCTGAGTGTGTTTATATGGATG 59.992 44.000 0.00 0.00 0.00 3.51
174 175 4.023707 GCCTGAGTGTGTTTATATGGATGC 60.024 45.833 0.00 0.00 0.00 3.91
175 176 4.212004 CCTGAGTGTGTTTATATGGATGCG 59.788 45.833 0.00 0.00 0.00 4.73
176 177 4.765273 TGAGTGTGTTTATATGGATGCGT 58.235 39.130 0.00 0.00 0.00 5.24
177 178 4.570369 TGAGTGTGTTTATATGGATGCGTG 59.430 41.667 0.00 0.00 0.00 5.34
178 179 4.513442 AGTGTGTTTATATGGATGCGTGT 58.487 39.130 0.00 0.00 0.00 4.49
179 180 4.941263 AGTGTGTTTATATGGATGCGTGTT 59.059 37.500 0.00 0.00 0.00 3.32
180 181 5.414454 AGTGTGTTTATATGGATGCGTGTTT 59.586 36.000 0.00 0.00 0.00 2.83
181 182 6.596106 AGTGTGTTTATATGGATGCGTGTTTA 59.404 34.615 0.00 0.00 0.00 2.01
182 183 7.282224 AGTGTGTTTATATGGATGCGTGTTTAT 59.718 33.333 0.00 0.00 0.00 1.40
183 184 8.552865 GTGTGTTTATATGGATGCGTGTTTATA 58.447 33.333 0.00 0.00 0.00 0.98
184 185 9.278978 TGTGTTTATATGGATGCGTGTTTATAT 57.721 29.630 0.00 0.00 0.00 0.86
185 186 9.541724 GTGTTTATATGGATGCGTGTTTATATG 57.458 33.333 0.00 0.00 0.00 1.78
186 187 9.278978 TGTTTATATGGATGCGTGTTTATATGT 57.721 29.630 0.00 0.00 0.00 2.29
187 188 9.541724 GTTTATATGGATGCGTGTTTATATGTG 57.458 33.333 0.00 0.00 0.00 3.21
188 189 8.840833 TTATATGGATGCGTGTTTATATGTGT 57.159 30.769 0.00 0.00 0.00 3.72
189 190 7.744087 ATATGGATGCGTGTTTATATGTGTT 57.256 32.000 0.00 0.00 0.00 3.32
190 191 5.228579 TGGATGCGTGTTTATATGTGTTG 57.771 39.130 0.00 0.00 0.00 3.33
191 192 4.697828 TGGATGCGTGTTTATATGTGTTGT 59.302 37.500 0.00 0.00 0.00 3.32
192 193 5.027737 GGATGCGTGTTTATATGTGTTGTG 58.972 41.667 0.00 0.00 0.00 3.33
193 194 5.163804 GGATGCGTGTTTATATGTGTTGTGA 60.164 40.000 0.00 0.00 0.00 3.58
194 195 5.276240 TGCGTGTTTATATGTGTTGTGAG 57.724 39.130 0.00 0.00 0.00 3.51
195 196 4.088648 GCGTGTTTATATGTGTTGTGAGC 58.911 43.478 0.00 0.00 0.00 4.26
196 197 4.377943 GCGTGTTTATATGTGTTGTGAGCA 60.378 41.667 0.00 0.00 0.00 4.26
197 198 5.673568 GCGTGTTTATATGTGTTGTGAGCAT 60.674 40.000 0.00 0.00 0.00 3.79
198 199 5.959527 CGTGTTTATATGTGTTGTGAGCATC 59.040 40.000 0.00 0.00 0.00 3.91
199 200 6.183360 CGTGTTTATATGTGTTGTGAGCATCT 60.183 38.462 0.00 0.00 34.92 2.90
200 201 6.963242 GTGTTTATATGTGTTGTGAGCATCTG 59.037 38.462 0.00 0.00 34.92 2.90
201 202 5.739752 TTATATGTGTTGTGAGCATCTGC 57.260 39.130 0.00 0.00 42.49 4.26
213 214 2.726555 GCATCTGCGATTGTACTGTG 57.273 50.000 0.00 0.00 0.00 3.66
214 215 2.002586 GCATCTGCGATTGTACTGTGT 58.997 47.619 0.00 0.00 0.00 3.72
215 216 2.416547 GCATCTGCGATTGTACTGTGTT 59.583 45.455 0.00 0.00 0.00 3.32
216 217 3.616821 GCATCTGCGATTGTACTGTGTTA 59.383 43.478 0.00 0.00 0.00 2.41
217 218 4.092821 GCATCTGCGATTGTACTGTGTTAA 59.907 41.667 0.00 0.00 0.00 2.01
218 219 5.390461 GCATCTGCGATTGTACTGTGTTAAA 60.390 40.000 0.00 0.00 0.00 1.52
219 220 6.598525 CATCTGCGATTGTACTGTGTTAAAA 58.401 36.000 0.00 0.00 0.00 1.52
220 221 6.606234 TCTGCGATTGTACTGTGTTAAAAA 57.394 33.333 0.00 0.00 0.00 1.94
221 222 7.197071 TCTGCGATTGTACTGTGTTAAAAAT 57.803 32.000 0.00 0.00 0.00 1.82
222 223 8.312896 TCTGCGATTGTACTGTGTTAAAAATA 57.687 30.769 0.00 0.00 0.00 1.40
223 224 8.775527 TCTGCGATTGTACTGTGTTAAAAATAA 58.224 29.630 0.00 0.00 0.00 1.40
224 225 9.388346 CTGCGATTGTACTGTGTTAAAAATAAA 57.612 29.630 0.00 0.00 0.00 1.40
225 226 9.171701 TGCGATTGTACTGTGTTAAAAATAAAC 57.828 29.630 0.00 0.00 0.00 2.01
226 227 9.389570 GCGATTGTACTGTGTTAAAAATAAACT 57.610 29.630 0.00 0.00 0.00 2.66
231 232 8.785946 TGTACTGTGTTAAAAATAAACTAGCCC 58.214 33.333 0.00 0.00 0.00 5.19
232 233 7.826918 ACTGTGTTAAAAATAAACTAGCCCA 57.173 32.000 0.00 0.00 0.00 5.36
233 234 7.654568 ACTGTGTTAAAAATAAACTAGCCCAC 58.345 34.615 0.00 0.00 0.00 4.61
234 235 7.285858 ACTGTGTTAAAAATAAACTAGCCCACA 59.714 33.333 0.00 0.00 0.00 4.17
235 236 7.427214 TGTGTTAAAAATAAACTAGCCCACAC 58.573 34.615 0.00 0.00 0.00 3.82
236 237 6.864685 GTGTTAAAAATAAACTAGCCCACACC 59.135 38.462 0.00 0.00 0.00 4.16
237 238 4.776795 AAAAATAAACTAGCCCACACCG 57.223 40.909 0.00 0.00 0.00 4.94
238 239 3.706600 AAATAAACTAGCCCACACCGA 57.293 42.857 0.00 0.00 0.00 4.69
239 240 2.685850 ATAAACTAGCCCACACCGAC 57.314 50.000 0.00 0.00 0.00 4.79
240 241 0.244450 TAAACTAGCCCACACCGACG 59.756 55.000 0.00 0.00 0.00 5.12
241 242 2.444700 AAACTAGCCCACACCGACGG 62.445 60.000 13.61 13.61 0.00 4.79
242 243 3.379445 CTAGCCCACACCGACGGT 61.379 66.667 15.37 15.37 35.62 4.83
243 244 2.918802 TAGCCCACACCGACGGTT 60.919 61.111 19.02 4.06 31.02 4.44
244 245 3.229156 TAGCCCACACCGACGGTTG 62.229 63.158 19.02 17.84 31.02 3.77
246 247 4.920112 CCCACACCGACGGTTGCA 62.920 66.667 19.02 0.00 31.02 4.08
247 248 2.897846 CCACACCGACGGTTGCAA 60.898 61.111 19.02 0.00 31.02 4.08
248 249 2.631428 CACACCGACGGTTGCAAG 59.369 61.111 19.02 8.39 31.02 4.01
249 250 2.590575 ACACCGACGGTTGCAAGG 60.591 61.111 19.02 7.58 31.02 3.61
250 251 4.025401 CACCGACGGTTGCAAGGC 62.025 66.667 19.02 0.00 31.02 4.35
251 252 4.250305 ACCGACGGTTGCAAGGCT 62.250 61.111 15.37 0.00 27.29 4.58
252 253 3.726517 CCGACGGTTGCAAGGCTG 61.727 66.667 5.48 0.00 0.00 4.85
253 254 3.726517 CGACGGTTGCAAGGCTGG 61.727 66.667 0.00 0.00 0.00 4.85
254 255 4.043200 GACGGTTGCAAGGCTGGC 62.043 66.667 7.01 7.01 0.00 4.85
257 258 4.347453 GGTTGCAAGGCTGGCGTG 62.347 66.667 9.78 12.54 0.00 5.34
258 259 3.595758 GTTGCAAGGCTGGCGTGT 61.596 61.111 17.37 0.00 0.00 4.49
259 260 3.594775 TTGCAAGGCTGGCGTGTG 61.595 61.111 17.37 8.33 0.00 3.82
260 261 4.560743 TGCAAGGCTGGCGTGTGA 62.561 61.111 17.37 3.40 0.00 3.58
261 262 3.286751 GCAAGGCTGGCGTGTGAA 61.287 61.111 17.37 0.00 0.00 3.18
262 263 2.844451 GCAAGGCTGGCGTGTGAAA 61.844 57.895 17.37 0.00 0.00 2.69
263 264 1.732917 CAAGGCTGGCGTGTGAAAA 59.267 52.632 8.91 0.00 0.00 2.29
264 265 0.314935 CAAGGCTGGCGTGTGAAAAT 59.685 50.000 8.91 0.00 0.00 1.82
265 266 0.314935 AAGGCTGGCGTGTGAAAATG 59.685 50.000 0.00 0.00 0.00 2.32
266 267 1.080569 GGCTGGCGTGTGAAAATGG 60.081 57.895 0.00 0.00 0.00 3.16
267 268 1.659794 GCTGGCGTGTGAAAATGGT 59.340 52.632 0.00 0.00 0.00 3.55
268 269 0.878416 GCTGGCGTGTGAAAATGGTA 59.122 50.000 0.00 0.00 0.00 3.25
269 270 1.401018 GCTGGCGTGTGAAAATGGTAC 60.401 52.381 0.00 0.00 0.00 3.34
302 303 9.886132 ATTTAGTACTACCTCTGTACCAAAATG 57.114 33.333 0.91 0.00 40.61 2.32
303 304 6.930068 AGTACTACCTCTGTACCAAAATGT 57.070 37.500 0.00 0.00 40.61 2.71
304 305 9.532494 TTAGTACTACCTCTGTACCAAAATGTA 57.468 33.333 0.91 0.00 40.61 2.29
305 306 8.605325 AGTACTACCTCTGTACCAAAATGTAT 57.395 34.615 0.00 0.00 40.61 2.29
306 307 9.705103 AGTACTACCTCTGTACCAAAATGTATA 57.295 33.333 0.00 0.00 40.61 1.47
309 310 9.263446 ACTACCTCTGTACCAAAATGTATAAGA 57.737 33.333 0.00 0.00 0.00 2.10
310 311 9.530633 CTACCTCTGTACCAAAATGTATAAGAC 57.469 37.037 0.00 0.00 0.00 3.01
311 312 7.039882 ACCTCTGTACCAAAATGTATAAGACG 58.960 38.462 0.00 0.00 0.00 4.18
312 313 7.039882 CCTCTGTACCAAAATGTATAAGACGT 58.960 38.462 0.00 0.00 0.00 4.34
313 314 7.222224 CCTCTGTACCAAAATGTATAAGACGTC 59.778 40.741 7.70 7.70 0.00 4.34
314 315 7.833786 TCTGTACCAAAATGTATAAGACGTCT 58.166 34.615 13.58 13.58 0.00 4.18
315 316 8.308931 TCTGTACCAAAATGTATAAGACGTCTT 58.691 33.333 31.70 31.70 39.85 3.01
316 317 8.836268 TGTACCAAAATGTATAAGACGTCTTT 57.164 30.769 33.82 22.67 37.40 2.52
317 318 8.714179 TGTACCAAAATGTATAAGACGTCTTTG 58.286 33.333 33.82 22.26 37.40 2.77
318 319 6.608610 ACCAAAATGTATAAGACGTCTTTGC 58.391 36.000 33.82 23.16 37.40 3.68
319 320 6.205853 ACCAAAATGTATAAGACGTCTTTGCA 59.794 34.615 33.82 27.00 37.40 4.08
320 321 7.081349 CCAAAATGTATAAGACGTCTTTGCAA 58.919 34.615 33.82 17.82 37.40 4.08
321 322 7.754924 CCAAAATGTATAAGACGTCTTTGCAAT 59.245 33.333 33.82 22.96 37.40 3.56
322 323 9.128107 CAAAATGTATAAGACGTCTTTGCAATT 57.872 29.630 33.82 23.58 37.40 2.32
329 330 8.687824 ATAAGACGTCTTTGCAATTAATTTGG 57.312 30.769 33.82 0.00 37.40 3.28
330 331 6.084326 AGACGTCTTTGCAATTAATTTGGT 57.916 33.333 13.58 0.00 35.75 3.67
331 332 7.209471 AGACGTCTTTGCAATTAATTTGGTA 57.791 32.000 13.58 0.00 35.75 3.25
332 333 7.081976 AGACGTCTTTGCAATTAATTTGGTAC 58.918 34.615 13.58 0.00 35.75 3.34
333 334 5.854338 ACGTCTTTGCAATTAATTTGGTACG 59.146 36.000 0.00 6.92 35.75 3.67
334 335 5.285134 CGTCTTTGCAATTAATTTGGTACGG 59.715 40.000 0.00 0.00 35.75 4.02
335 336 6.383415 GTCTTTGCAATTAATTTGGTACGGA 58.617 36.000 0.00 0.00 35.75 4.69
336 337 6.526674 GTCTTTGCAATTAATTTGGTACGGAG 59.473 38.462 0.00 0.00 35.75 4.63
337 338 4.974368 TGCAATTAATTTGGTACGGAGG 57.026 40.909 0.00 0.00 35.75 4.30
338 339 4.337145 TGCAATTAATTTGGTACGGAGGT 58.663 39.130 0.00 0.00 35.75 3.85
339 340 5.498393 TGCAATTAATTTGGTACGGAGGTA 58.502 37.500 0.00 0.00 35.75 3.08
340 341 5.587043 TGCAATTAATTTGGTACGGAGGTAG 59.413 40.000 0.00 0.00 35.75 3.18
341 342 5.505159 GCAATTAATTTGGTACGGAGGTAGC 60.505 44.000 0.00 0.00 45.21 3.58
346 347 2.877975 GGTACGGAGGTAGCAGTGA 58.122 57.895 0.00 0.00 44.55 3.41
347 348 0.455005 GGTACGGAGGTAGCAGTGAC 59.545 60.000 0.00 0.00 44.55 3.67
348 349 0.455005 GTACGGAGGTAGCAGTGACC 59.545 60.000 0.00 0.00 37.22 4.02
355 356 3.015675 AGGTAGCAGTGACCTAGGTAC 57.984 52.381 16.29 13.23 45.82 3.34
356 357 1.674962 GGTAGCAGTGACCTAGGTACG 59.325 57.143 16.29 4.67 37.17 3.67
357 358 2.636830 GTAGCAGTGACCTAGGTACGA 58.363 52.381 16.29 0.00 0.00 3.43
358 359 2.211250 AGCAGTGACCTAGGTACGAA 57.789 50.000 16.29 0.00 0.00 3.85
359 360 2.093106 AGCAGTGACCTAGGTACGAAG 58.907 52.381 16.29 5.46 0.00 3.79
360 361 2.089980 GCAGTGACCTAGGTACGAAGA 58.910 52.381 16.29 0.00 0.00 2.87
361 362 2.159407 GCAGTGACCTAGGTACGAAGAC 60.159 54.545 16.29 0.34 0.00 3.01
362 363 2.422832 CAGTGACCTAGGTACGAAGACC 59.577 54.545 16.29 0.00 40.08 3.85
374 375 6.161911 GGTACGAAGACCTCATTTTTGTAC 57.838 41.667 0.00 5.74 39.39 2.90
375 376 5.697633 GGTACGAAGACCTCATTTTTGTACA 59.302 40.000 13.15 0.00 40.79 2.90
376 377 6.370718 GGTACGAAGACCTCATTTTTGTACAT 59.629 38.462 13.15 0.00 40.79 2.29
377 378 6.481954 ACGAAGACCTCATTTTTGTACATC 57.518 37.500 0.00 0.00 0.00 3.06
378 379 5.120208 ACGAAGACCTCATTTTTGTACATCG 59.880 40.000 0.00 0.48 0.00 3.84
379 380 4.946784 AGACCTCATTTTTGTACATCGC 57.053 40.909 0.00 0.00 0.00 4.58
380 381 3.689649 AGACCTCATTTTTGTACATCGCC 59.310 43.478 0.00 0.00 0.00 5.54
381 382 3.686016 ACCTCATTTTTGTACATCGCCT 58.314 40.909 0.00 0.00 0.00 5.52
382 383 4.839121 ACCTCATTTTTGTACATCGCCTA 58.161 39.130 0.00 0.00 0.00 3.93
383 384 5.250200 ACCTCATTTTTGTACATCGCCTAA 58.750 37.500 0.00 0.00 0.00 2.69
384 385 5.708230 ACCTCATTTTTGTACATCGCCTAAA 59.292 36.000 0.00 0.00 0.00 1.85
385 386 6.377146 ACCTCATTTTTGTACATCGCCTAAAT 59.623 34.615 0.00 0.00 0.00 1.40
386 387 7.093945 ACCTCATTTTTGTACATCGCCTAAATT 60.094 33.333 0.00 0.00 0.00 1.82
387 388 7.759433 CCTCATTTTTGTACATCGCCTAAATTT 59.241 33.333 0.00 0.00 0.00 1.82
388 389 9.139174 CTCATTTTTGTACATCGCCTAAATTTT 57.861 29.630 0.00 0.00 0.00 1.82
389 390 8.920665 TCATTTTTGTACATCGCCTAAATTTTG 58.079 29.630 0.00 0.00 0.00 2.44
390 391 6.698359 TTTTGTACATCGCCTAAATTTTGC 57.302 33.333 0.00 0.00 0.00 3.68
398 399 4.901866 CGCCTAAATTTTGCGTTTTCAT 57.098 36.364 20.34 0.00 43.12 2.57
399 400 5.262714 CGCCTAAATTTTGCGTTTTCATT 57.737 34.783 20.34 0.00 43.12 2.57
400 401 5.674989 CGCCTAAATTTTGCGTTTTCATTT 58.325 33.333 20.34 0.00 43.12 2.32
401 402 5.559632 CGCCTAAATTTTGCGTTTTCATTTG 59.440 36.000 20.34 0.00 43.12 2.32
402 403 6.563010 CGCCTAAATTTTGCGTTTTCATTTGA 60.563 34.615 20.34 0.00 43.12 2.69
403 404 6.791775 GCCTAAATTTTGCGTTTTCATTTGAG 59.208 34.615 0.00 0.00 0.00 3.02
404 405 6.791775 CCTAAATTTTGCGTTTTCATTTGAGC 59.208 34.615 0.00 0.00 0.00 4.26
405 406 4.730600 ATTTTGCGTTTTCATTTGAGCC 57.269 36.364 0.00 0.00 0.00 4.70
406 407 2.879002 TTGCGTTTTCATTTGAGCCA 57.121 40.000 0.00 0.00 0.00 4.75
407 408 2.132740 TGCGTTTTCATTTGAGCCAC 57.867 45.000 0.00 0.00 0.00 5.01
408 409 1.052287 GCGTTTTCATTTGAGCCACG 58.948 50.000 0.00 0.00 0.00 4.94
409 410 1.052287 CGTTTTCATTTGAGCCACGC 58.948 50.000 0.00 0.00 0.00 5.34
410 411 1.052287 GTTTTCATTTGAGCCACGCG 58.948 50.000 3.53 3.53 0.00 6.01
411 412 0.662970 TTTTCATTTGAGCCACGCGC 60.663 50.000 5.73 0.00 37.98 6.86
439 440 8.560576 CGAAGCTCAAAAAGAAATACAAAGAA 57.439 30.769 0.00 0.00 0.00 2.52
440 441 9.185192 CGAAGCTCAAAAAGAAATACAAAGAAT 57.815 29.630 0.00 0.00 0.00 2.40
446 447 9.825972 TCAAAAAGAAATACAAAGAATCTAGCG 57.174 29.630 0.00 0.00 0.00 4.26
447 448 8.578769 CAAAAAGAAATACAAAGAATCTAGCGC 58.421 33.333 0.00 0.00 0.00 5.92
448 449 5.643339 AGAAATACAAAGAATCTAGCGCG 57.357 39.130 0.00 0.00 0.00 6.86
449 450 3.861569 AATACAAAGAATCTAGCGCGC 57.138 42.857 26.66 26.66 0.00 6.86
450 451 2.579207 TACAAAGAATCTAGCGCGCT 57.421 45.000 38.01 38.01 0.00 5.92
451 452 1.281899 ACAAAGAATCTAGCGCGCTC 58.718 50.000 40.23 23.47 0.00 5.03
452 453 0.579156 CAAAGAATCTAGCGCGCTCC 59.421 55.000 40.23 21.37 0.00 4.70
453 454 0.872021 AAAGAATCTAGCGCGCTCCG 60.872 55.000 40.23 28.74 40.75 4.63
472 473 4.400109 GTCCAGCGCGTCGTCAGA 62.400 66.667 8.43 0.00 0.00 3.27
473 474 3.440415 TCCAGCGCGTCGTCAGAT 61.440 61.111 8.43 0.00 0.00 2.90
474 475 2.951745 CCAGCGCGTCGTCAGATC 60.952 66.667 8.43 0.00 0.00 2.75
475 476 2.101185 CAGCGCGTCGTCAGATCT 59.899 61.111 8.43 0.00 0.00 2.75
476 477 2.101185 AGCGCGTCGTCAGATCTG 59.899 61.111 17.07 17.07 0.00 2.90
477 478 2.100410 GCGCGTCGTCAGATCTGA 59.900 61.111 21.67 21.67 37.24 3.27
490 491 3.282838 TCTGACCCCAGACCCAGA 58.717 61.111 0.00 0.00 44.01 3.86
491 492 1.079256 TCTGACCCCAGACCCAGAG 59.921 63.158 0.00 0.00 44.01 3.35
492 493 1.992277 CTGACCCCAGACCCAGAGG 60.992 68.421 0.00 0.00 43.02 3.69
493 494 3.403558 GACCCCAGACCCAGAGGC 61.404 72.222 0.00 0.00 36.11 4.70
494 495 3.933542 GACCCCAGACCCAGAGGCT 62.934 68.421 0.00 0.00 36.11 4.58
495 496 3.406200 CCCCAGACCCAGAGGCTG 61.406 72.222 0.00 0.00 37.17 4.85
496 497 2.284921 CCCAGACCCAGAGGCTGA 60.285 66.667 0.00 0.00 38.72 4.26
497 498 2.365586 CCCAGACCCAGAGGCTGAG 61.366 68.421 0.00 0.00 38.72 3.35
498 499 2.365586 CCAGACCCAGAGGCTGAGG 61.366 68.421 0.00 0.00 38.72 3.86
499 500 2.686835 AGACCCAGAGGCTGAGGC 60.687 66.667 0.00 0.00 36.11 4.70
500 501 3.005539 GACCCAGAGGCTGAGGCA 61.006 66.667 9.23 0.00 40.87 4.75
501 502 3.007920 ACCCAGAGGCTGAGGCAG 61.008 66.667 9.23 0.00 40.87 4.85
502 503 3.795041 CCCAGAGGCTGAGGCAGG 61.795 72.222 9.23 6.99 40.87 4.85
503 504 3.007920 CCAGAGGCTGAGGCAGGT 61.008 66.667 9.23 0.00 40.87 4.00
504 505 2.583520 CAGAGGCTGAGGCAGGTC 59.416 66.667 9.23 0.00 40.87 3.85
505 506 2.121385 AGAGGCTGAGGCAGGTCA 59.879 61.111 9.23 0.00 40.87 4.02
506 507 2.267324 GAGGCTGAGGCAGGTCAC 59.733 66.667 9.23 0.00 40.87 3.67
507 508 3.655810 GAGGCTGAGGCAGGTCACG 62.656 68.421 9.23 0.00 40.87 4.35
509 510 4.385405 GCTGAGGCAGGTCACGCT 62.385 66.667 0.00 0.00 38.54 5.07
510 511 2.433838 CTGAGGCAGGTCACGCTG 60.434 66.667 0.00 0.00 0.00 5.18
511 512 3.947132 CTGAGGCAGGTCACGCTGG 62.947 68.421 0.00 0.00 0.00 4.85
512 513 3.695606 GAGGCAGGTCACGCTGGA 61.696 66.667 0.00 0.00 0.00 3.86
513 514 3.655810 GAGGCAGGTCACGCTGGAG 62.656 68.421 0.00 0.00 0.00 3.86
514 515 4.767255 GGCAGGTCACGCTGGAGG 62.767 72.222 0.00 0.00 0.00 4.30
515 516 4.008933 GCAGGTCACGCTGGAGGT 62.009 66.667 0.00 0.00 0.00 3.85
516 517 2.262915 CAGGTCACGCTGGAGGTC 59.737 66.667 0.00 0.00 0.00 3.85
517 518 2.997897 AGGTCACGCTGGAGGTCC 60.998 66.667 0.00 0.00 0.00 4.46
518 519 2.997897 GGTCACGCTGGAGGTCCT 60.998 66.667 0.00 0.00 36.82 3.85
519 520 2.574399 GTCACGCTGGAGGTCCTC 59.426 66.667 10.78 10.78 36.82 3.71
520 521 2.117423 TCACGCTGGAGGTCCTCA 59.883 61.111 20.72 6.09 36.82 3.86
521 522 2.262915 CACGCTGGAGGTCCTCAC 59.737 66.667 20.72 10.37 36.82 3.51
522 523 3.374402 ACGCTGGAGGTCCTCACG 61.374 66.667 20.72 20.58 36.82 4.35
523 524 4.803426 CGCTGGAGGTCCTCACGC 62.803 72.222 20.72 18.80 36.82 5.34
524 525 4.803426 GCTGGAGGTCCTCACGCG 62.803 72.222 20.72 3.53 36.82 6.01
525 526 4.803426 CTGGAGGTCCTCACGCGC 62.803 72.222 20.72 0.00 36.82 6.86
528 529 4.148825 GAGGTCCTCACGCGCCAT 62.149 66.667 14.46 0.00 0.00 4.40
529 530 2.758327 AGGTCCTCACGCGCCATA 60.758 61.111 5.73 0.00 0.00 2.74
530 531 2.585247 GGTCCTCACGCGCCATAC 60.585 66.667 5.73 0.00 0.00 2.39
583 605 3.831911 AGAAAGACTTGAGGGAGAGTCAG 59.168 47.826 6.31 0.00 43.65 3.51
637 664 2.526304 TATGCACCTTCGGCTATCAC 57.474 50.000 0.00 0.00 0.00 3.06
784 857 0.249398 AGATGACCGTAGCACAACCC 59.751 55.000 0.00 0.00 0.00 4.11
817 890 7.244558 AGGTTAGTTAAACACTAGTACTCCCT 58.755 38.462 0.00 1.96 39.28 4.20
949 1056 8.630054 TTATTCCCCTTGTTTTGATATATCCG 57.370 34.615 10.25 0.00 0.00 4.18
951 1065 6.750660 TCCCCTTGTTTTGATATATCCGTA 57.249 37.500 10.25 0.00 0.00 4.02
954 1068 5.411669 CCCTTGTTTTGATATATCCGTAGCC 59.588 44.000 10.25 0.00 0.00 3.93
956 1070 6.369065 CCTTGTTTTGATATATCCGTAGCCTC 59.631 42.308 10.25 0.00 0.00 4.70
957 1071 6.665992 TGTTTTGATATATCCGTAGCCTCT 57.334 37.500 10.25 0.00 0.00 3.69
1154 1300 7.988599 AGTTTATACGGTATGTTCATGCCTTAA 59.011 33.333 15.56 9.25 0.00 1.85
1195 1362 6.017934 GGAGAAGTTGCGCATATTTCTGAATA 60.018 38.462 26.21 1.53 32.56 1.75
1196 1363 6.952743 AGAAGTTGCGCATATTTCTGAATAG 58.047 36.000 22.70 0.00 31.58 1.73
1464 1631 5.932883 CGAATATTTACCTAAGGGAAGCCTC 59.067 44.000 0.00 0.00 36.25 4.70
1491 1658 3.996825 CCTCTTTGGTATGCAACGC 57.003 52.632 0.00 0.00 0.00 4.84
1492 1659 1.453155 CCTCTTTGGTATGCAACGCT 58.547 50.000 0.00 0.00 0.00 5.07
1493 1660 1.812571 CCTCTTTGGTATGCAACGCTT 59.187 47.619 0.00 0.00 0.00 4.68
1494 1661 2.159517 CCTCTTTGGTATGCAACGCTTC 60.160 50.000 0.00 0.00 0.00 3.86
1500 1674 4.071961 TGGTATGCAACGCTTCTGATAT 57.928 40.909 0.00 0.00 0.00 1.63
1507 1681 6.291067 TGCAACGCTTCTGATATATTTCTG 57.709 37.500 0.00 0.00 0.00 3.02
1542 1771 8.274322 TCATCTGATATTTACCATGTTTGGAGT 58.726 33.333 0.00 0.00 46.92 3.85
1713 1947 8.380742 TCCTTCATAGGATTCCTATTATCCAC 57.619 38.462 20.55 0.00 43.60 4.02
1745 1979 6.572519 TGAAGCCTCAAAATATATTGTTGGC 58.427 36.000 16.32 16.32 43.84 4.52
1857 2093 4.586841 GGATCATAGTAAGCTGACTGGAGT 59.413 45.833 14.59 0.00 0.00 3.85
1890 2207 9.687717 GATATTTTGTGGTAAATTGCATTTTCG 57.312 29.630 9.72 0.00 33.82 3.46
1904 2221 4.941263 TGCATTTTCGCCTTCTAGTAATGT 59.059 37.500 0.00 0.00 0.00 2.71
1909 2233 9.651718 CATTTTCGCCTTCTAGTAATGTTTATC 57.348 33.333 0.00 0.00 0.00 1.75
1987 2313 2.569404 AGGTGAAATCTCCACTCAGTCC 59.431 50.000 4.50 0.00 35.05 3.85
2190 2555 5.998981 ACATAGGTACGTCAAAATTGGACAA 59.001 36.000 1.05 0.00 34.97 3.18
2193 2558 6.210287 AGGTACGTCAAAATTGGACAAAAA 57.790 33.333 1.05 0.00 34.97 1.94
2234 2602 5.151297 ACAAGTTAAATCCAAATGCCCTG 57.849 39.130 0.00 0.00 0.00 4.45
2364 2755 7.655732 GTGCAAACCTGGTATGAAAATTAACTT 59.344 33.333 0.00 0.00 0.00 2.66
2369 2760 8.664669 ACCTGGTATGAAAATTAACTTTGGAT 57.335 30.769 0.00 0.00 0.00 3.41
2776 3300 6.025280 GCAAACTTTTTCTCGTGAAGTTACA 58.975 36.000 0.00 0.00 41.36 2.41
2840 3459 5.318630 TGGCACATAATCACATCTGCATAT 58.681 37.500 0.00 0.00 0.00 1.78
2878 3499 7.227910 GGTCTTTGTCGGCTATCCATATTTTAA 59.772 37.037 0.00 0.00 0.00 1.52
2960 3584 3.916776 GCTTCTGTTGCATTTAAGCTGTC 59.083 43.478 13.34 0.00 39.51 3.51
3053 3679 6.558009 TCTATTGATGAAAGAAGCAACATGC 58.442 36.000 0.00 0.00 45.46 4.06
3127 3754 1.080298 GTTGTGTTGTCACGTCACCA 58.920 50.000 2.31 0.00 46.49 4.17
3176 3803 4.904241 ACTGCTATTCCATTATCTCCTGC 58.096 43.478 0.00 0.00 0.00 4.85
3184 3811 3.326006 TCCATTATCTCCTGCAGTCCATC 59.674 47.826 13.81 0.00 0.00 3.51
3198 3825 4.508124 GCAGTCCATCGTTTTATACTCCAG 59.492 45.833 0.00 0.00 0.00 3.86
3266 3893 6.546395 AGAATTGAAATTTCTTCGGTCGATG 58.454 36.000 18.64 0.00 0.00 3.84
3280 3907 3.737972 CGGTCGATGAAACATGAGATCCA 60.738 47.826 0.00 0.00 0.00 3.41
3302 3930 5.006455 CCACTGATCGATCAAACAAGAGATG 59.994 44.000 27.09 14.46 36.18 2.90
3350 3978 5.103940 AGGCAAAGAAGAAGGGCATATTCTA 60.104 40.000 0.73 0.00 35.98 2.10
3360 3988 2.159170 GGGCATATTCTAGCTAGCCTCG 60.159 54.545 16.35 4.50 41.71 4.63
3538 4166 0.391130 AATCTGCGCTTTGCCGTCTA 60.391 50.000 9.73 0.00 45.60 2.59
3589 4217 3.119849 CGAAAGGATGACGGCAAAGAAAT 60.120 43.478 0.00 0.00 0.00 2.17
3609 4237 1.202915 TCAAGATGGCAAACTGGCTCA 60.203 47.619 0.00 0.00 44.10 4.26
3622 4250 4.806571 GCTCATCGCCGTCTGTTA 57.193 55.556 0.00 0.00 0.00 2.41
3653 4281 0.321653 GACGGCAAAGGATGGACACT 60.322 55.000 0.00 0.00 0.00 3.55
3756 4385 2.366533 CGTCTGCCTTCTGTCCTACTA 58.633 52.381 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.895404 TGCTATAGGGTAAGGCGGTAAG 59.105 50.000 1.04 0.00 0.00 2.34
3 4 2.025636 ATGCTATAGGGTAAGGCGGT 57.974 50.000 1.04 0.00 0.00 5.68
4 5 2.674177 CGAATGCTATAGGGTAAGGCGG 60.674 54.545 1.04 0.00 0.00 6.13
6 7 2.347731 GCGAATGCTATAGGGTAAGGC 58.652 52.381 1.04 0.00 38.39 4.35
19 20 5.611197 GCAAAAAGAAGAAAGAAGCGAATGC 60.611 40.000 0.00 0.00 43.24 3.56
21 22 4.984785 GGCAAAAAGAAGAAAGAAGCGAAT 59.015 37.500 0.00 0.00 0.00 3.34
22 23 4.142271 TGGCAAAAAGAAGAAAGAAGCGAA 60.142 37.500 0.00 0.00 0.00 4.70
23 24 3.380004 TGGCAAAAAGAAGAAAGAAGCGA 59.620 39.130 0.00 0.00 0.00 4.93
25 26 6.421377 TTTTGGCAAAAAGAAGAAAGAAGC 57.579 33.333 22.24 0.00 31.61 3.86
40 41 2.223595 TGAATCGCGTTCTTTTTGGCAA 60.224 40.909 5.77 0.00 37.72 4.52
42 43 2.044888 TGAATCGCGTTCTTTTTGGC 57.955 45.000 5.77 0.00 37.72 4.52
43 44 3.628017 ACTTGAATCGCGTTCTTTTTGG 58.372 40.909 5.77 1.55 37.72 3.28
44 45 5.201910 TGTACTTGAATCGCGTTCTTTTTG 58.798 37.500 5.77 3.02 37.72 2.44
46 47 4.084013 CCTGTACTTGAATCGCGTTCTTTT 60.084 41.667 5.77 1.14 37.72 2.27
48 49 2.993899 CCTGTACTTGAATCGCGTTCTT 59.006 45.455 5.77 0.00 37.72 2.52
49 50 2.230508 TCCTGTACTTGAATCGCGTTCT 59.769 45.455 5.77 0.00 37.72 3.01
50 51 2.602878 TCCTGTACTTGAATCGCGTTC 58.397 47.619 5.77 10.15 37.35 3.95
51 52 2.736144 TCCTGTACTTGAATCGCGTT 57.264 45.000 5.77 0.00 0.00 4.84
52 53 2.735134 GTTTCCTGTACTTGAATCGCGT 59.265 45.455 5.77 0.00 0.00 6.01
53 54 2.734606 TGTTTCCTGTACTTGAATCGCG 59.265 45.455 0.00 0.00 0.00 5.87
54 55 3.496884 TGTGTTTCCTGTACTTGAATCGC 59.503 43.478 0.00 4.01 0.00 4.58
55 56 4.750098 AGTGTGTTTCCTGTACTTGAATCG 59.250 41.667 0.00 0.00 0.00 3.34
56 57 7.724305 TTAGTGTGTTTCCTGTACTTGAATC 57.276 36.000 0.00 0.00 0.00 2.52
57 58 8.691661 ATTTAGTGTGTTTCCTGTACTTGAAT 57.308 30.769 0.00 0.00 0.00 2.57
58 59 7.227910 GGATTTAGTGTGTTTCCTGTACTTGAA 59.772 37.037 0.00 0.00 0.00 2.69
59 60 6.708949 GGATTTAGTGTGTTTCCTGTACTTGA 59.291 38.462 0.00 0.00 0.00 3.02
61 62 5.699458 CGGATTTAGTGTGTTTCCTGTACTT 59.301 40.000 0.00 0.00 0.00 2.24
62 63 5.221581 ACGGATTTAGTGTGTTTCCTGTACT 60.222 40.000 0.00 0.00 0.00 2.73
63 64 4.992951 ACGGATTTAGTGTGTTTCCTGTAC 59.007 41.667 0.00 0.00 0.00 2.90
64 65 5.217978 ACGGATTTAGTGTGTTTCCTGTA 57.782 39.130 0.00 0.00 0.00 2.74
65 66 4.081322 ACGGATTTAGTGTGTTTCCTGT 57.919 40.909 0.00 0.00 0.00 4.00
66 67 4.513692 TCAACGGATTTAGTGTGTTTCCTG 59.486 41.667 0.00 0.00 0.00 3.86
67 68 4.514066 GTCAACGGATTTAGTGTGTTTCCT 59.486 41.667 0.00 0.00 0.00 3.36
68 69 4.514066 AGTCAACGGATTTAGTGTGTTTCC 59.486 41.667 0.00 0.00 0.00 3.13
69 70 5.668558 AGTCAACGGATTTAGTGTGTTTC 57.331 39.130 0.00 0.00 0.00 2.78
70 71 5.587043 TGAAGTCAACGGATTTAGTGTGTTT 59.413 36.000 0.00 0.00 0.00 2.83
71 72 5.120399 TGAAGTCAACGGATTTAGTGTGTT 58.880 37.500 0.00 0.00 0.00 3.32
72 73 4.699637 TGAAGTCAACGGATTTAGTGTGT 58.300 39.130 0.00 0.00 0.00 3.72
73 74 5.236478 ACTTGAAGTCAACGGATTTAGTGTG 59.764 40.000 0.00 0.00 0.00 3.82
74 75 5.365619 ACTTGAAGTCAACGGATTTAGTGT 58.634 37.500 0.00 0.00 0.00 3.55
75 76 5.924475 ACTTGAAGTCAACGGATTTAGTG 57.076 39.130 0.00 0.00 0.00 2.74
76 77 5.820947 ACAACTTGAAGTCAACGGATTTAGT 59.179 36.000 0.00 0.00 0.00 2.24
77 78 6.300354 ACAACTTGAAGTCAACGGATTTAG 57.700 37.500 0.00 0.00 0.00 1.85
78 79 6.094325 ACAACAACTTGAAGTCAACGGATTTA 59.906 34.615 0.00 0.00 0.00 1.40
79 80 5.105917 ACAACAACTTGAAGTCAACGGATTT 60.106 36.000 0.00 0.00 0.00 2.17
80 81 4.398044 ACAACAACTTGAAGTCAACGGATT 59.602 37.500 0.00 0.00 0.00 3.01
81 82 3.945285 ACAACAACTTGAAGTCAACGGAT 59.055 39.130 0.00 0.00 0.00 4.18
82 83 3.340034 ACAACAACTTGAAGTCAACGGA 58.660 40.909 0.00 0.00 0.00 4.69
83 84 3.757745 ACAACAACTTGAAGTCAACGG 57.242 42.857 0.00 0.00 0.00 4.44
84 85 6.255215 ACAATACAACAACTTGAAGTCAACG 58.745 36.000 0.00 0.00 0.00 4.10
85 86 7.472543 AGACAATACAACAACTTGAAGTCAAC 58.527 34.615 0.00 0.00 0.00 3.18
86 87 7.624360 AGACAATACAACAACTTGAAGTCAA 57.376 32.000 0.00 0.00 0.00 3.18
87 88 7.624360 AAGACAATACAACAACTTGAAGTCA 57.376 32.000 0.00 0.00 0.00 3.41
88 89 8.827677 ACTAAGACAATACAACAACTTGAAGTC 58.172 33.333 0.00 0.00 0.00 3.01
89 90 8.732746 ACTAAGACAATACAACAACTTGAAGT 57.267 30.769 0.00 0.00 0.00 3.01
98 99 9.226606 CCTCCAAAATACTAAGACAATACAACA 57.773 33.333 0.00 0.00 0.00 3.33
99 100 9.227777 ACCTCCAAAATACTAAGACAATACAAC 57.772 33.333 0.00 0.00 0.00 3.32
100 101 9.226606 CACCTCCAAAATACTAAGACAATACAA 57.773 33.333 0.00 0.00 0.00 2.41
101 102 7.335924 GCACCTCCAAAATACTAAGACAATACA 59.664 37.037 0.00 0.00 0.00 2.29
102 103 7.553044 AGCACCTCCAAAATACTAAGACAATAC 59.447 37.037 0.00 0.00 0.00 1.89
103 104 7.630082 AGCACCTCCAAAATACTAAGACAATA 58.370 34.615 0.00 0.00 0.00 1.90
104 105 6.485171 AGCACCTCCAAAATACTAAGACAAT 58.515 36.000 0.00 0.00 0.00 2.71
105 106 5.876357 AGCACCTCCAAAATACTAAGACAA 58.124 37.500 0.00 0.00 0.00 3.18
106 107 5.012664 TGAGCACCTCCAAAATACTAAGACA 59.987 40.000 0.00 0.00 0.00 3.41
107 108 5.488341 TGAGCACCTCCAAAATACTAAGAC 58.512 41.667 0.00 0.00 0.00 3.01
108 109 5.755409 TGAGCACCTCCAAAATACTAAGA 57.245 39.130 0.00 0.00 0.00 2.10
109 110 6.708054 CCTATGAGCACCTCCAAAATACTAAG 59.292 42.308 0.00 0.00 0.00 2.18
110 111 6.409234 CCCTATGAGCACCTCCAAAATACTAA 60.409 42.308 0.00 0.00 0.00 2.24
111 112 5.071788 CCCTATGAGCACCTCCAAAATACTA 59.928 44.000 0.00 0.00 0.00 1.82
112 113 4.141390 CCCTATGAGCACCTCCAAAATACT 60.141 45.833 0.00 0.00 0.00 2.12
113 114 4.137543 CCCTATGAGCACCTCCAAAATAC 58.862 47.826 0.00 0.00 0.00 1.89
114 115 4.044308 TCCCTATGAGCACCTCCAAAATA 58.956 43.478 0.00 0.00 0.00 1.40
115 116 2.852449 TCCCTATGAGCACCTCCAAAAT 59.148 45.455 0.00 0.00 0.00 1.82
116 117 2.026262 GTCCCTATGAGCACCTCCAAAA 60.026 50.000 0.00 0.00 0.00 2.44
117 118 1.559682 GTCCCTATGAGCACCTCCAAA 59.440 52.381 0.00 0.00 0.00 3.28
118 119 1.204146 GTCCCTATGAGCACCTCCAA 58.796 55.000 0.00 0.00 0.00 3.53
119 120 0.042581 TGTCCCTATGAGCACCTCCA 59.957 55.000 0.00 0.00 0.00 3.86
120 121 0.755686 CTGTCCCTATGAGCACCTCC 59.244 60.000 0.00 0.00 0.00 4.30
121 122 1.781786 TCTGTCCCTATGAGCACCTC 58.218 55.000 0.00 0.00 0.00 3.85
122 123 2.254152 TTCTGTCCCTATGAGCACCT 57.746 50.000 0.00 0.00 0.00 4.00
123 124 3.567478 ATTTCTGTCCCTATGAGCACC 57.433 47.619 0.00 0.00 0.00 5.01
124 125 5.858381 TCATATTTCTGTCCCTATGAGCAC 58.142 41.667 0.00 0.00 0.00 4.40
125 126 6.043590 ACATCATATTTCTGTCCCTATGAGCA 59.956 38.462 0.00 0.00 34.91 4.26
126 127 6.370994 CACATCATATTTCTGTCCCTATGAGC 59.629 42.308 0.00 0.00 34.91 4.26
127 128 6.370994 GCACATCATATTTCTGTCCCTATGAG 59.629 42.308 0.00 0.00 34.91 2.90
128 129 6.233434 GCACATCATATTTCTGTCCCTATGA 58.767 40.000 0.00 0.00 35.65 2.15
129 130 5.413833 GGCACATCATATTTCTGTCCCTATG 59.586 44.000 0.00 0.00 0.00 2.23
130 131 5.311649 AGGCACATCATATTTCTGTCCCTAT 59.688 40.000 0.00 0.00 0.00 2.57
131 132 4.660303 AGGCACATCATATTTCTGTCCCTA 59.340 41.667 0.00 0.00 0.00 3.53
132 133 3.461085 AGGCACATCATATTTCTGTCCCT 59.539 43.478 0.00 0.00 0.00 4.20
133 134 3.567164 CAGGCACATCATATTTCTGTCCC 59.433 47.826 0.00 0.00 0.00 4.46
134 135 4.454678 TCAGGCACATCATATTTCTGTCC 58.545 43.478 0.00 0.00 0.00 4.02
135 136 5.007430 CACTCAGGCACATCATATTTCTGTC 59.993 44.000 0.00 0.00 0.00 3.51
136 137 4.880120 CACTCAGGCACATCATATTTCTGT 59.120 41.667 0.00 0.00 0.00 3.41
137 138 4.880120 ACACTCAGGCACATCATATTTCTG 59.120 41.667 0.00 0.00 0.00 3.02
138 139 4.880120 CACACTCAGGCACATCATATTTCT 59.120 41.667 0.00 0.00 0.00 2.52
139 140 4.637534 ACACACTCAGGCACATCATATTTC 59.362 41.667 0.00 0.00 0.00 2.17
140 141 4.592942 ACACACTCAGGCACATCATATTT 58.407 39.130 0.00 0.00 0.00 1.40
141 142 4.226427 ACACACTCAGGCACATCATATT 57.774 40.909 0.00 0.00 0.00 1.28
142 143 3.920231 ACACACTCAGGCACATCATAT 57.080 42.857 0.00 0.00 0.00 1.78
143 144 3.701205 AACACACTCAGGCACATCATA 57.299 42.857 0.00 0.00 0.00 2.15
144 145 2.574006 AACACACTCAGGCACATCAT 57.426 45.000 0.00 0.00 0.00 2.45
145 146 2.346766 AAACACACTCAGGCACATCA 57.653 45.000 0.00 0.00 0.00 3.07
146 147 5.008019 CCATATAAACACACTCAGGCACATC 59.992 44.000 0.00 0.00 0.00 3.06
147 148 4.883585 CCATATAAACACACTCAGGCACAT 59.116 41.667 0.00 0.00 0.00 3.21
148 149 4.019771 TCCATATAAACACACTCAGGCACA 60.020 41.667 0.00 0.00 0.00 4.57
149 150 4.513442 TCCATATAAACACACTCAGGCAC 58.487 43.478 0.00 0.00 0.00 5.01
150 151 4.835284 TCCATATAAACACACTCAGGCA 57.165 40.909 0.00 0.00 0.00 4.75
151 152 4.023707 GCATCCATATAAACACACTCAGGC 60.024 45.833 0.00 0.00 0.00 4.85
152 153 4.212004 CGCATCCATATAAACACACTCAGG 59.788 45.833 0.00 0.00 0.00 3.86
153 154 4.811024 ACGCATCCATATAAACACACTCAG 59.189 41.667 0.00 0.00 0.00 3.35
154 155 4.570369 CACGCATCCATATAAACACACTCA 59.430 41.667 0.00 0.00 0.00 3.41
155 156 4.570772 ACACGCATCCATATAAACACACTC 59.429 41.667 0.00 0.00 0.00 3.51
156 157 4.513442 ACACGCATCCATATAAACACACT 58.487 39.130 0.00 0.00 0.00 3.55
157 158 4.875544 ACACGCATCCATATAAACACAC 57.124 40.909 0.00 0.00 0.00 3.82
158 159 5.888691 AAACACGCATCCATATAAACACA 57.111 34.783 0.00 0.00 0.00 3.72
159 160 9.541724 CATATAAACACGCATCCATATAAACAC 57.458 33.333 0.00 0.00 0.00 3.32
160 161 9.278978 ACATATAAACACGCATCCATATAAACA 57.721 29.630 0.00 0.00 0.00 2.83
161 162 9.541724 CACATATAAACACGCATCCATATAAAC 57.458 33.333 0.00 0.00 0.00 2.01
162 163 9.278978 ACACATATAAACACGCATCCATATAAA 57.721 29.630 0.00 0.00 0.00 1.40
163 164 8.840833 ACACATATAAACACGCATCCATATAA 57.159 30.769 0.00 0.00 0.00 0.98
164 165 8.716909 CAACACATATAAACACGCATCCATATA 58.283 33.333 0.00 0.00 0.00 0.86
165 166 7.228507 ACAACACATATAAACACGCATCCATAT 59.771 33.333 0.00 0.00 0.00 1.78
166 167 6.540551 ACAACACATATAAACACGCATCCATA 59.459 34.615 0.00 0.00 0.00 2.74
167 168 5.356751 ACAACACATATAAACACGCATCCAT 59.643 36.000 0.00 0.00 0.00 3.41
168 169 4.697828 ACAACACATATAAACACGCATCCA 59.302 37.500 0.00 0.00 0.00 3.41
169 170 5.027737 CACAACACATATAAACACGCATCC 58.972 41.667 0.00 0.00 0.00 3.51
170 171 5.863898 TCACAACACATATAAACACGCATC 58.136 37.500 0.00 0.00 0.00 3.91
171 172 5.673568 GCTCACAACACATATAAACACGCAT 60.674 40.000 0.00 0.00 0.00 4.73
172 173 4.377943 GCTCACAACACATATAAACACGCA 60.378 41.667 0.00 0.00 0.00 5.24
173 174 4.088648 GCTCACAACACATATAAACACGC 58.911 43.478 0.00 0.00 0.00 5.34
174 175 5.276240 TGCTCACAACACATATAAACACG 57.724 39.130 0.00 0.00 0.00 4.49
175 176 6.963242 CAGATGCTCACAACACATATAAACAC 59.037 38.462 0.00 0.00 0.00 3.32
176 177 6.403527 GCAGATGCTCACAACACATATAAACA 60.404 38.462 0.00 0.00 38.21 2.83
177 178 5.967674 GCAGATGCTCACAACACATATAAAC 59.032 40.000 0.00 0.00 38.21 2.01
178 179 5.220643 CGCAGATGCTCACAACACATATAAA 60.221 40.000 2.95 0.00 39.32 1.40
179 180 4.270808 CGCAGATGCTCACAACACATATAA 59.729 41.667 2.95 0.00 39.32 0.98
180 181 3.803778 CGCAGATGCTCACAACACATATA 59.196 43.478 2.95 0.00 39.32 0.86
181 182 2.610833 CGCAGATGCTCACAACACATAT 59.389 45.455 2.95 0.00 39.32 1.78
182 183 2.001872 CGCAGATGCTCACAACACATA 58.998 47.619 2.95 0.00 39.32 2.29
183 184 0.800631 CGCAGATGCTCACAACACAT 59.199 50.000 2.95 0.00 39.32 3.21
184 185 0.249826 TCGCAGATGCTCACAACACA 60.250 50.000 2.95 0.00 39.32 3.72
185 186 1.081892 ATCGCAGATGCTCACAACAC 58.918 50.000 2.95 0.00 45.12 3.32
186 187 1.465777 CAATCGCAGATGCTCACAACA 59.534 47.619 2.95 0.00 45.12 3.33
187 188 1.466167 ACAATCGCAGATGCTCACAAC 59.534 47.619 2.95 0.00 45.12 3.32
188 189 1.812235 ACAATCGCAGATGCTCACAA 58.188 45.000 2.95 0.00 45.12 3.33
189 190 2.094026 AGTACAATCGCAGATGCTCACA 60.094 45.455 2.95 0.00 45.12 3.58
190 191 2.283617 CAGTACAATCGCAGATGCTCAC 59.716 50.000 2.95 0.00 45.12 3.51
191 192 2.094026 ACAGTACAATCGCAGATGCTCA 60.094 45.455 2.95 0.00 45.12 4.26
192 193 2.283617 CACAGTACAATCGCAGATGCTC 59.716 50.000 2.95 0.00 45.12 4.26
193 194 2.274437 CACAGTACAATCGCAGATGCT 58.726 47.619 2.95 0.00 45.12 3.79
194 195 2.002586 ACACAGTACAATCGCAGATGC 58.997 47.619 0.00 0.00 45.12 3.91
195 196 5.778161 TTAACACAGTACAATCGCAGATG 57.222 39.130 0.00 0.00 45.12 2.90
196 197 6.795098 TTTTAACACAGTACAATCGCAGAT 57.205 33.333 0.00 0.00 45.12 2.90
197 198 6.606234 TTTTTAACACAGTACAATCGCAGA 57.394 33.333 0.00 0.00 45.75 4.26
198 199 8.942669 TTATTTTTAACACAGTACAATCGCAG 57.057 30.769 0.00 0.00 0.00 5.18
199 200 9.171701 GTTTATTTTTAACACAGTACAATCGCA 57.828 29.630 0.00 0.00 0.00 5.10
200 201 9.389570 AGTTTATTTTTAACACAGTACAATCGC 57.610 29.630 0.00 0.00 0.00 4.58
205 206 8.785946 GGGCTAGTTTATTTTTAACACAGTACA 58.214 33.333 0.00 0.00 0.00 2.90
206 207 8.785946 TGGGCTAGTTTATTTTTAACACAGTAC 58.214 33.333 0.00 0.00 0.00 2.73
207 208 8.785946 GTGGGCTAGTTTATTTTTAACACAGTA 58.214 33.333 0.00 0.00 0.00 2.74
208 209 7.285858 TGTGGGCTAGTTTATTTTTAACACAGT 59.714 33.333 0.00 0.00 31.31 3.55
209 210 7.593644 GTGTGGGCTAGTTTATTTTTAACACAG 59.406 37.037 0.00 0.00 35.03 3.66
210 211 7.427214 GTGTGGGCTAGTTTATTTTTAACACA 58.573 34.615 0.00 0.00 34.61 3.72
211 212 6.864685 GGTGTGGGCTAGTTTATTTTTAACAC 59.135 38.462 0.00 0.00 33.91 3.32
212 213 6.294065 CGGTGTGGGCTAGTTTATTTTTAACA 60.294 38.462 0.00 0.00 0.00 2.41
213 214 6.072563 TCGGTGTGGGCTAGTTTATTTTTAAC 60.073 38.462 0.00 0.00 0.00 2.01
214 215 6.002704 TCGGTGTGGGCTAGTTTATTTTTAA 58.997 36.000 0.00 0.00 0.00 1.52
215 216 5.412286 GTCGGTGTGGGCTAGTTTATTTTTA 59.588 40.000 0.00 0.00 0.00 1.52
216 217 4.216902 GTCGGTGTGGGCTAGTTTATTTTT 59.783 41.667 0.00 0.00 0.00 1.94
217 218 3.754850 GTCGGTGTGGGCTAGTTTATTTT 59.245 43.478 0.00 0.00 0.00 1.82
218 219 3.340928 GTCGGTGTGGGCTAGTTTATTT 58.659 45.455 0.00 0.00 0.00 1.40
219 220 2.675889 CGTCGGTGTGGGCTAGTTTATT 60.676 50.000 0.00 0.00 0.00 1.40
220 221 1.134907 CGTCGGTGTGGGCTAGTTTAT 60.135 52.381 0.00 0.00 0.00 1.40
221 222 0.244450 CGTCGGTGTGGGCTAGTTTA 59.756 55.000 0.00 0.00 0.00 2.01
222 223 1.005394 CGTCGGTGTGGGCTAGTTT 60.005 57.895 0.00 0.00 0.00 2.66
223 224 2.654877 CGTCGGTGTGGGCTAGTT 59.345 61.111 0.00 0.00 0.00 2.24
224 225 3.379445 CCGTCGGTGTGGGCTAGT 61.379 66.667 2.08 0.00 0.00 2.57
225 226 2.939261 AACCGTCGGTGTGGGCTAG 61.939 63.158 19.67 0.00 35.34 3.42
226 227 2.918802 AACCGTCGGTGTGGGCTA 60.919 61.111 19.67 0.00 35.34 3.93
227 228 4.619227 CAACCGTCGGTGTGGGCT 62.619 66.667 19.67 0.00 35.34 5.19
229 230 4.920112 TGCAACCGTCGGTGTGGG 62.920 66.667 19.67 9.35 35.34 4.61
230 231 2.892334 CTTGCAACCGTCGGTGTGG 61.892 63.158 19.67 11.96 35.34 4.17
231 232 2.631428 CTTGCAACCGTCGGTGTG 59.369 61.111 19.67 18.09 35.34 3.82
232 233 2.590575 CCTTGCAACCGTCGGTGT 60.591 61.111 19.67 5.45 35.34 4.16
233 234 4.025401 GCCTTGCAACCGTCGGTG 62.025 66.667 19.67 13.16 35.34 4.94
234 235 4.250305 AGCCTTGCAACCGTCGGT 62.250 61.111 12.23 12.23 37.65 4.69
235 236 3.726517 CAGCCTTGCAACCGTCGG 61.727 66.667 10.48 10.48 0.00 4.79
236 237 3.726517 CCAGCCTTGCAACCGTCG 61.727 66.667 0.00 0.00 0.00 5.12
237 238 4.043200 GCCAGCCTTGCAACCGTC 62.043 66.667 0.00 0.00 0.00 4.79
240 241 4.347453 CACGCCAGCCTTGCAACC 62.347 66.667 0.00 0.00 0.00 3.77
241 242 3.595758 ACACGCCAGCCTTGCAAC 61.596 61.111 0.00 0.00 0.00 4.17
242 243 3.594775 CACACGCCAGCCTTGCAA 61.595 61.111 0.00 0.00 0.00 4.08
243 244 4.560743 TCACACGCCAGCCTTGCA 62.561 61.111 0.00 0.00 0.00 4.08
244 245 2.348605 TTTTCACACGCCAGCCTTGC 62.349 55.000 0.00 0.00 0.00 4.01
245 246 0.314935 ATTTTCACACGCCAGCCTTG 59.685 50.000 0.00 0.00 0.00 3.61
246 247 0.314935 CATTTTCACACGCCAGCCTT 59.685 50.000 0.00 0.00 0.00 4.35
247 248 1.526575 CCATTTTCACACGCCAGCCT 61.527 55.000 0.00 0.00 0.00 4.58
248 249 1.080569 CCATTTTCACACGCCAGCC 60.081 57.895 0.00 0.00 0.00 4.85
249 250 0.878416 TACCATTTTCACACGCCAGC 59.122 50.000 0.00 0.00 0.00 4.85
250 251 1.876799 TGTACCATTTTCACACGCCAG 59.123 47.619 0.00 0.00 0.00 4.85
251 252 1.968704 TGTACCATTTTCACACGCCA 58.031 45.000 0.00 0.00 0.00 5.69
252 253 3.569250 AATGTACCATTTTCACACGCC 57.431 42.857 0.00 0.00 0.00 5.68
253 254 8.850454 AATATAAATGTACCATTTTCACACGC 57.150 30.769 7.43 0.00 0.00 5.34
276 277 9.886132 CATTTTGGTACAGAGGTAGTACTAAAT 57.114 33.333 3.61 11.02 45.70 1.40
277 278 8.873144 ACATTTTGGTACAGAGGTAGTACTAAA 58.127 33.333 3.61 9.83 45.17 1.85
278 279 8.426569 ACATTTTGGTACAGAGGTAGTACTAA 57.573 34.615 3.61 0.00 42.39 2.24
279 280 9.705103 ATACATTTTGGTACAGAGGTAGTACTA 57.295 33.333 0.00 0.00 42.39 1.82
280 281 6.930068 ACATTTTGGTACAGAGGTAGTACT 57.070 37.500 0.00 0.00 42.39 2.73
283 284 9.263446 TCTTATACATTTTGGTACAGAGGTAGT 57.737 33.333 0.00 0.00 42.39 2.73
284 285 9.530633 GTCTTATACATTTTGGTACAGAGGTAG 57.469 37.037 0.00 0.00 42.39 3.18
285 286 8.192774 CGTCTTATACATTTTGGTACAGAGGTA 58.807 37.037 0.00 0.00 42.39 3.08
286 287 7.039882 CGTCTTATACATTTTGGTACAGAGGT 58.960 38.462 0.00 0.00 42.39 3.85
287 288 7.039882 ACGTCTTATACATTTTGGTACAGAGG 58.960 38.462 0.00 0.00 42.39 3.69
288 289 7.974501 AGACGTCTTATACATTTTGGTACAGAG 59.025 37.037 13.58 0.00 42.39 3.35
289 290 7.833786 AGACGTCTTATACATTTTGGTACAGA 58.166 34.615 13.58 0.00 42.39 3.41
290 291 8.475331 AAGACGTCTTATACATTTTGGTACAG 57.525 34.615 28.80 0.00 34.85 2.74
291 292 8.714179 CAAAGACGTCTTATACATTTTGGTACA 58.286 33.333 29.91 0.00 34.61 2.90
292 293 7.691050 GCAAAGACGTCTTATACATTTTGGTAC 59.309 37.037 29.91 6.91 34.61 3.34
293 294 7.388224 TGCAAAGACGTCTTATACATTTTGGTA 59.612 33.333 29.91 0.06 34.61 3.25
294 295 6.205853 TGCAAAGACGTCTTATACATTTTGGT 59.794 34.615 29.91 8.02 34.61 3.67
295 296 6.607689 TGCAAAGACGTCTTATACATTTTGG 58.392 36.000 29.91 4.69 34.61 3.28
296 297 8.673626 ATTGCAAAGACGTCTTATACATTTTG 57.326 30.769 29.91 21.42 34.61 2.44
303 304 9.781834 CCAAATTAATTGCAAAGACGTCTTATA 57.218 29.630 29.91 16.49 37.73 0.98
304 305 8.303876 ACCAAATTAATTGCAAAGACGTCTTAT 58.696 29.630 29.91 17.22 37.73 1.73
305 306 7.653647 ACCAAATTAATTGCAAAGACGTCTTA 58.346 30.769 29.91 15.64 37.73 2.10
306 307 6.512297 ACCAAATTAATTGCAAAGACGTCTT 58.488 32.000 24.93 24.93 37.73 3.01
307 308 6.084326 ACCAAATTAATTGCAAAGACGTCT 57.916 33.333 13.58 13.58 37.73 4.18
308 309 6.032042 CGTACCAAATTAATTGCAAAGACGTC 59.968 38.462 7.70 7.70 37.73 4.34
309 310 5.854338 CGTACCAAATTAATTGCAAAGACGT 59.146 36.000 1.71 0.00 37.73 4.34
310 311 5.285134 CCGTACCAAATTAATTGCAAAGACG 59.715 40.000 1.71 7.38 37.73 4.18
311 312 6.383415 TCCGTACCAAATTAATTGCAAAGAC 58.617 36.000 1.71 0.00 37.73 3.01
312 313 6.349777 CCTCCGTACCAAATTAATTGCAAAGA 60.350 38.462 1.71 0.00 37.73 2.52
313 314 5.804979 CCTCCGTACCAAATTAATTGCAAAG 59.195 40.000 1.71 0.00 37.73 2.77
314 315 5.244178 ACCTCCGTACCAAATTAATTGCAAA 59.756 36.000 1.71 0.00 37.73 3.68
315 316 4.767928 ACCTCCGTACCAAATTAATTGCAA 59.232 37.500 0.00 0.00 37.73 4.08
316 317 4.337145 ACCTCCGTACCAAATTAATTGCA 58.663 39.130 0.39 0.00 37.73 4.08
317 318 4.976224 ACCTCCGTACCAAATTAATTGC 57.024 40.909 0.39 0.00 37.73 3.56
318 319 5.587043 TGCTACCTCCGTACCAAATTAATTG 59.413 40.000 0.39 0.00 38.84 2.32
319 320 5.747342 TGCTACCTCCGTACCAAATTAATT 58.253 37.500 0.00 0.00 0.00 1.40
320 321 5.104652 ACTGCTACCTCCGTACCAAATTAAT 60.105 40.000 0.00 0.00 0.00 1.40
321 322 4.223477 ACTGCTACCTCCGTACCAAATTAA 59.777 41.667 0.00 0.00 0.00 1.40
322 323 3.770933 ACTGCTACCTCCGTACCAAATTA 59.229 43.478 0.00 0.00 0.00 1.40
323 324 2.570302 ACTGCTACCTCCGTACCAAATT 59.430 45.455 0.00 0.00 0.00 1.82
324 325 2.093658 CACTGCTACCTCCGTACCAAAT 60.094 50.000 0.00 0.00 0.00 2.32
325 326 1.274167 CACTGCTACCTCCGTACCAAA 59.726 52.381 0.00 0.00 0.00 3.28
326 327 0.892755 CACTGCTACCTCCGTACCAA 59.107 55.000 0.00 0.00 0.00 3.67
327 328 0.038599 TCACTGCTACCTCCGTACCA 59.961 55.000 0.00 0.00 0.00 3.25
328 329 0.455005 GTCACTGCTACCTCCGTACC 59.545 60.000 0.00 0.00 0.00 3.34
329 330 0.455005 GGTCACTGCTACCTCCGTAC 59.545 60.000 0.00 0.00 33.97 3.67
330 331 0.330604 AGGTCACTGCTACCTCCGTA 59.669 55.000 0.00 0.00 44.20 4.02
331 332 0.330604 TAGGTCACTGCTACCTCCGT 59.669 55.000 4.92 0.00 44.20 4.69
332 333 1.025812 CTAGGTCACTGCTACCTCCG 58.974 60.000 4.92 0.00 44.20 4.63
333 334 1.342175 ACCTAGGTCACTGCTACCTCC 60.342 57.143 9.21 0.00 44.20 4.30
334 335 2.146920 ACCTAGGTCACTGCTACCTC 57.853 55.000 9.21 0.00 44.20 3.85
336 337 1.674962 CGTACCTAGGTCACTGCTACC 59.325 57.143 20.32 0.00 37.27 3.18
337 338 2.636830 TCGTACCTAGGTCACTGCTAC 58.363 52.381 20.32 8.24 0.00 3.58
338 339 3.054875 TCTTCGTACCTAGGTCACTGCTA 60.055 47.826 20.32 0.00 0.00 3.49
339 340 2.093106 CTTCGTACCTAGGTCACTGCT 58.907 52.381 20.32 0.00 0.00 4.24
340 341 2.089980 TCTTCGTACCTAGGTCACTGC 58.910 52.381 20.32 4.09 0.00 4.40
341 342 2.422832 GGTCTTCGTACCTAGGTCACTG 59.577 54.545 20.32 6.98 36.53 3.66
342 343 2.720915 GGTCTTCGTACCTAGGTCACT 58.279 52.381 20.32 0.00 36.53 3.41
351 352 5.697633 TGTACAAAAATGAGGTCTTCGTACC 59.302 40.000 0.00 0.00 40.06 3.34
352 353 6.774354 TGTACAAAAATGAGGTCTTCGTAC 57.226 37.500 0.00 0.00 0.00 3.67
353 354 6.309494 CGATGTACAAAAATGAGGTCTTCGTA 59.691 38.462 0.00 0.00 0.00 3.43
354 355 5.120208 CGATGTACAAAAATGAGGTCTTCGT 59.880 40.000 0.00 0.00 0.00 3.85
355 356 5.550981 CGATGTACAAAAATGAGGTCTTCG 58.449 41.667 0.00 0.00 0.00 3.79
356 357 5.324697 GCGATGTACAAAAATGAGGTCTTC 58.675 41.667 0.00 0.00 0.00 2.87
357 358 4.156008 GGCGATGTACAAAAATGAGGTCTT 59.844 41.667 0.00 0.00 0.00 3.01
358 359 3.689649 GGCGATGTACAAAAATGAGGTCT 59.310 43.478 0.00 0.00 0.00 3.85
359 360 3.689649 AGGCGATGTACAAAAATGAGGTC 59.310 43.478 0.00 0.00 0.00 3.85
360 361 3.686016 AGGCGATGTACAAAAATGAGGT 58.314 40.909 0.00 0.00 0.00 3.85
361 362 5.811399 TTAGGCGATGTACAAAAATGAGG 57.189 39.130 0.00 0.00 0.00 3.86
362 363 8.687824 AAATTTAGGCGATGTACAAAAATGAG 57.312 30.769 0.00 0.00 0.00 2.90
363 364 8.920665 CAAAATTTAGGCGATGTACAAAAATGA 58.079 29.630 0.00 0.00 0.00 2.57
364 365 7.687757 GCAAAATTTAGGCGATGTACAAAAATG 59.312 33.333 0.00 0.00 0.00 2.32
365 366 7.738345 GCAAAATTTAGGCGATGTACAAAAAT 58.262 30.769 0.00 0.00 0.00 1.82
366 367 7.111353 GCAAAATTTAGGCGATGTACAAAAA 57.889 32.000 0.00 0.00 0.00 1.94
367 368 6.698359 GCAAAATTTAGGCGATGTACAAAA 57.302 33.333 0.00 0.00 0.00 2.44
378 379 6.654122 TCAAATGAAAACGCAAAATTTAGGC 58.346 32.000 5.01 5.01 0.00 3.93
379 380 6.791775 GCTCAAATGAAAACGCAAAATTTAGG 59.208 34.615 0.00 0.00 0.00 2.69
380 381 6.791775 GGCTCAAATGAAAACGCAAAATTTAG 59.208 34.615 0.00 0.00 0.00 1.85
381 382 6.258727 TGGCTCAAATGAAAACGCAAAATTTA 59.741 30.769 0.00 0.00 0.00 1.40
382 383 5.065731 TGGCTCAAATGAAAACGCAAAATTT 59.934 32.000 0.00 0.00 0.00 1.82
383 384 4.574013 TGGCTCAAATGAAAACGCAAAATT 59.426 33.333 0.00 0.00 0.00 1.82
384 385 4.024977 GTGGCTCAAATGAAAACGCAAAAT 60.025 37.500 0.00 0.00 0.00 1.82
385 386 3.308323 GTGGCTCAAATGAAAACGCAAAA 59.692 39.130 0.00 0.00 0.00 2.44
386 387 2.863137 GTGGCTCAAATGAAAACGCAAA 59.137 40.909 0.00 0.00 0.00 3.68
387 388 2.468831 GTGGCTCAAATGAAAACGCAA 58.531 42.857 0.00 0.00 0.00 4.85
388 389 1.599171 CGTGGCTCAAATGAAAACGCA 60.599 47.619 0.00 0.00 0.00 5.24
389 390 1.052287 CGTGGCTCAAATGAAAACGC 58.948 50.000 0.00 0.00 0.00 4.84
390 391 1.052287 GCGTGGCTCAAATGAAAACG 58.948 50.000 7.45 7.45 0.00 3.60
391 392 1.052287 CGCGTGGCTCAAATGAAAAC 58.948 50.000 0.00 0.00 0.00 2.43
392 393 0.662970 GCGCGTGGCTCAAATGAAAA 60.663 50.000 8.43 0.00 39.11 2.29
393 394 1.081509 GCGCGTGGCTCAAATGAAA 60.082 52.632 8.43 0.00 39.11 2.69
394 395 2.560861 GCGCGTGGCTCAAATGAA 59.439 55.556 8.43 0.00 39.11 2.57
411 412 5.451908 TGTATTTCTTTTTGAGCTTCGCAG 58.548 37.500 0.00 0.00 0.00 5.18
412 413 5.431420 TGTATTTCTTTTTGAGCTTCGCA 57.569 34.783 0.00 0.00 0.00 5.10
413 414 6.636850 TCTTTGTATTTCTTTTTGAGCTTCGC 59.363 34.615 0.00 0.00 0.00 4.70
414 415 8.560576 TTCTTTGTATTTCTTTTTGAGCTTCG 57.439 30.769 0.00 0.00 0.00 3.79
420 421 9.825972 CGCTAGATTCTTTGTATTTCTTTTTGA 57.174 29.630 0.00 0.00 0.00 2.69
421 422 8.578769 GCGCTAGATTCTTTGTATTTCTTTTTG 58.421 33.333 0.00 0.00 0.00 2.44
422 423 7.481798 CGCGCTAGATTCTTTGTATTTCTTTTT 59.518 33.333 5.56 0.00 0.00 1.94
423 424 6.961554 CGCGCTAGATTCTTTGTATTTCTTTT 59.038 34.615 5.56 0.00 0.00 2.27
424 425 6.478588 CGCGCTAGATTCTTTGTATTTCTTT 58.521 36.000 5.56 0.00 0.00 2.52
425 426 5.502544 GCGCGCTAGATTCTTTGTATTTCTT 60.503 40.000 26.67 0.00 0.00 2.52
426 427 4.025647 GCGCGCTAGATTCTTTGTATTTCT 60.026 41.667 26.67 0.00 0.00 2.52
427 428 4.025647 AGCGCGCTAGATTCTTTGTATTTC 60.026 41.667 35.79 0.00 0.00 2.17
428 429 3.871594 AGCGCGCTAGATTCTTTGTATTT 59.128 39.130 35.79 0.63 0.00 1.40
429 430 3.458189 AGCGCGCTAGATTCTTTGTATT 58.542 40.909 35.79 1.11 0.00 1.89
430 431 3.053455 GAGCGCGCTAGATTCTTTGTAT 58.947 45.455 36.69 6.49 0.00 2.29
431 432 2.460918 GAGCGCGCTAGATTCTTTGTA 58.539 47.619 36.69 0.00 0.00 2.41
432 433 1.281899 GAGCGCGCTAGATTCTTTGT 58.718 50.000 36.69 7.30 0.00 2.83
433 434 0.579156 GGAGCGCGCTAGATTCTTTG 59.421 55.000 36.69 0.00 0.00 2.77
434 435 0.872021 CGGAGCGCGCTAGATTCTTT 60.872 55.000 36.69 8.91 0.00 2.52
435 436 1.299468 CGGAGCGCGCTAGATTCTT 60.299 57.895 36.69 9.84 0.00 2.52
436 437 2.333225 CGGAGCGCGCTAGATTCT 59.667 61.111 36.69 10.80 0.00 2.40
455 456 3.685214 ATCTGACGACGCGCTGGAC 62.685 63.158 5.73 0.00 0.00 4.02
456 457 3.396911 GATCTGACGACGCGCTGGA 62.397 63.158 5.73 0.00 0.00 3.86
457 458 2.951745 GATCTGACGACGCGCTGG 60.952 66.667 5.73 0.00 0.00 4.85
458 459 2.101185 AGATCTGACGACGCGCTG 59.899 61.111 5.73 0.00 0.00 5.18
459 460 2.101185 CAGATCTGACGACGCGCT 59.899 61.111 18.34 0.00 0.00 5.92
460 461 2.100410 TCAGATCTGACGACGCGC 59.900 61.111 21.67 0.00 34.14 6.86
473 474 1.079256 CTCTGGGTCTGGGGTCAGA 59.921 63.158 0.00 0.00 46.81 3.27
474 475 1.992277 CCTCTGGGTCTGGGGTCAG 60.992 68.421 0.00 0.00 42.21 3.51
475 476 2.122729 CCTCTGGGTCTGGGGTCA 59.877 66.667 0.00 0.00 0.00 4.02
476 477 3.403558 GCCTCTGGGTCTGGGGTC 61.404 72.222 0.00 0.00 34.45 4.46
477 478 3.947041 AGCCTCTGGGTCTGGGGT 61.947 66.667 0.00 0.00 34.45 4.95
478 479 3.406200 CAGCCTCTGGGTCTGGGG 61.406 72.222 0.00 0.00 35.00 4.96
479 480 2.284921 TCAGCCTCTGGGTCTGGG 60.285 66.667 0.00 0.00 37.36 4.45
480 481 2.365586 CCTCAGCCTCTGGGTCTGG 61.366 68.421 0.00 0.00 37.36 3.86
481 482 3.028921 GCCTCAGCCTCTGGGTCTG 62.029 68.421 0.00 0.00 37.77 3.51
482 483 2.686835 GCCTCAGCCTCTGGGTCT 60.687 66.667 0.00 0.00 28.24 3.85
483 484 3.005539 TGCCTCAGCCTCTGGGTC 61.006 66.667 0.00 0.00 38.69 4.46
484 485 3.007920 CTGCCTCAGCCTCTGGGT 61.008 66.667 0.00 0.00 38.69 4.51
485 486 3.795041 CCTGCCTCAGCCTCTGGG 61.795 72.222 0.00 0.00 38.69 4.45
486 487 3.007920 ACCTGCCTCAGCCTCTGG 61.008 66.667 0.00 0.00 38.69 3.86
487 488 2.288778 TGACCTGCCTCAGCCTCTG 61.289 63.158 0.00 0.00 38.69 3.35
488 489 2.121385 TGACCTGCCTCAGCCTCT 59.879 61.111 0.00 0.00 38.69 3.69
489 490 2.267324 GTGACCTGCCTCAGCCTC 59.733 66.667 0.00 0.00 38.69 4.70
490 491 3.699894 CGTGACCTGCCTCAGCCT 61.700 66.667 0.00 0.00 38.69 4.58
492 493 4.385405 AGCGTGACCTGCCTCAGC 62.385 66.667 0.00 0.00 40.48 4.26
493 494 2.433838 CAGCGTGACCTGCCTCAG 60.434 66.667 0.00 0.00 0.00 3.35
494 495 4.007644 CCAGCGTGACCTGCCTCA 62.008 66.667 0.00 0.00 0.00 3.86
495 496 3.655810 CTCCAGCGTGACCTGCCTC 62.656 68.421 0.00 0.00 0.00 4.70
496 497 3.699894 CTCCAGCGTGACCTGCCT 61.700 66.667 0.00 0.00 0.00 4.75
497 498 4.767255 CCTCCAGCGTGACCTGCC 62.767 72.222 0.00 0.00 0.00 4.85
498 499 3.941657 GACCTCCAGCGTGACCTGC 62.942 68.421 0.00 0.00 0.00 4.85
499 500 2.262915 GACCTCCAGCGTGACCTG 59.737 66.667 0.00 0.00 0.00 4.00
500 501 2.997897 GGACCTCCAGCGTGACCT 60.998 66.667 0.00 0.00 35.64 3.85
501 502 2.997897 AGGACCTCCAGCGTGACC 60.998 66.667 0.00 0.00 38.89 4.02
502 503 2.276116 TGAGGACCTCCAGCGTGAC 61.276 63.158 19.11 0.00 38.89 3.67
503 504 2.117423 TGAGGACCTCCAGCGTGA 59.883 61.111 19.11 0.00 38.89 4.35
504 505 2.262915 GTGAGGACCTCCAGCGTG 59.737 66.667 19.11 0.00 38.89 5.34
505 506 3.374402 CGTGAGGACCTCCAGCGT 61.374 66.667 19.11 0.00 38.89 5.07
506 507 4.803426 GCGTGAGGACCTCCAGCG 62.803 72.222 19.11 19.34 38.89 5.18
507 508 4.803426 CGCGTGAGGACCTCCAGC 62.803 72.222 19.11 20.65 38.89 4.85
508 509 4.803426 GCGCGTGAGGACCTCCAG 62.803 72.222 19.11 13.23 38.89 3.86
511 512 2.782222 TATGGCGCGTGAGGACCTC 61.782 63.158 15.13 15.13 0.00 3.85
512 513 2.758327 TATGGCGCGTGAGGACCT 60.758 61.111 8.43 0.00 0.00 3.85
513 514 2.585247 GTATGGCGCGTGAGGACC 60.585 66.667 8.43 0.00 0.00 4.46
514 515 2.954868 CGTATGGCGCGTGAGGAC 60.955 66.667 8.43 0.00 0.00 3.85
524 525 0.784778 GATCTGTTAGCGCGTATGGC 59.215 55.000 8.43 0.00 38.69 4.40
525 526 1.419374 GGATCTGTTAGCGCGTATGG 58.581 55.000 8.43 0.00 0.00 2.74
526 527 1.419374 GGGATCTGTTAGCGCGTATG 58.581 55.000 8.43 0.00 0.00 2.39
527 528 0.317479 GGGGATCTGTTAGCGCGTAT 59.683 55.000 8.43 0.00 0.00 3.06
528 529 1.737816 GGGGATCTGTTAGCGCGTA 59.262 57.895 8.43 0.00 0.00 4.42
529 530 2.499685 GGGGATCTGTTAGCGCGT 59.500 61.111 8.43 0.00 0.00 6.01
530 531 2.280186 GGGGGATCTGTTAGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
531 532 2.280186 CGGGGGATCTGTTAGCGC 60.280 66.667 0.00 0.00 0.00 5.92
532 533 0.107848 AAACGGGGGATCTGTTAGCG 60.108 55.000 0.00 0.00 43.70 4.26
533 534 2.014857 GAAAACGGGGGATCTGTTAGC 58.985 52.381 0.00 0.00 43.70 3.09
534 535 3.629142 AGAAAACGGGGGATCTGTTAG 57.371 47.619 0.00 0.00 43.70 2.34
535 536 4.376225 AAAGAAAACGGGGGATCTGTTA 57.624 40.909 0.00 0.00 43.70 2.41
536 537 2.971901 AAGAAAACGGGGGATCTGTT 57.028 45.000 0.00 0.00 46.24 3.16
583 605 3.118956 ACGAGATCTGGATTGAGTTGACC 60.119 47.826 12.14 0.00 0.00 4.02
637 664 3.426695 GCTTGTGAGATGAATGGTTTCGG 60.427 47.826 0.00 0.00 34.39 4.30
868 962 4.439253 AAGCCATAACATTACTCCCTCC 57.561 45.455 0.00 0.00 0.00 4.30
949 1056 4.061596 GGATGTGAATTGCTAGAGGCTAC 58.938 47.826 0.00 0.00 42.39 3.58
951 1065 2.507058 TGGATGTGAATTGCTAGAGGCT 59.493 45.455 0.00 0.00 42.39 4.58
954 1068 7.714377 AGAAGTAATGGATGTGAATTGCTAGAG 59.286 37.037 0.00 0.00 29.90 2.43
956 1070 7.496920 TGAGAAGTAATGGATGTGAATTGCTAG 59.503 37.037 0.00 0.00 29.90 3.42
957 1071 7.337938 TGAGAAGTAATGGATGTGAATTGCTA 58.662 34.615 0.00 0.00 29.90 3.49
1154 1300 7.661040 CAACTTCTCCAAATGGTAAAGAATGT 58.339 34.615 17.45 9.37 34.36 2.71
1195 1362 3.197766 TGTTCAACCTCACAGACACTTCT 59.802 43.478 0.00 0.00 0.00 2.85
1196 1363 3.531538 TGTTCAACCTCACAGACACTTC 58.468 45.455 0.00 0.00 0.00 3.01
1486 1653 7.706281 AGACAGAAATATATCAGAAGCGTTG 57.294 36.000 0.00 0.00 0.00 4.10
1487 1654 9.469807 CTAAGACAGAAATATATCAGAAGCGTT 57.530 33.333 0.00 0.00 0.00 4.84
1489 1656 9.469807 AACTAAGACAGAAATATATCAGAAGCG 57.530 33.333 0.00 0.00 0.00 4.68
1522 1696 6.987992 TCCGTACTCCAAACATGGTAAATATC 59.012 38.462 0.00 0.00 0.00 1.63
1531 1760 6.538742 AGAATGTAATCCGTACTCCAAACATG 59.461 38.462 0.00 0.00 33.46 3.21
1542 1771 7.406031 AGAGAACAGAAGAATGTAATCCGTA 57.594 36.000 0.00 0.00 31.70 4.02
1603 1834 5.820947 TGGGTTTGTCTGAAGTTAAAGAGTC 59.179 40.000 0.00 0.00 0.00 3.36
1650 1884 7.340743 TCGCAGATCCCCTTAATTATTTTGAAA 59.659 33.333 0.00 0.00 0.00 2.69
1745 1979 3.479505 TTTTCGGCGTCATGTTATTGG 57.520 42.857 6.85 0.00 0.00 3.16
1857 2093 9.149225 GCAATTTACCACAAAATATCATCACAA 57.851 29.630 0.00 0.00 0.00 3.33
1909 2233 7.304735 TGCACACAGTTAGCAGTAATAATTTG 58.695 34.615 0.00 0.00 33.75 2.32
1987 2313 9.871238 ATTAATAGGCCTAAACTGTATATGTCG 57.129 33.333 18.42 0.00 0.00 4.35
2153 2515 8.028354 TGACGTACCTATGTTAAGAATTCGAAA 58.972 33.333 0.00 0.00 0.00 3.46
2190 2555 2.128771 ATGGACGCTATGTGCCTTTT 57.871 45.000 0.00 0.00 38.31 2.27
2193 2558 2.897326 TGTATATGGACGCTATGTGCCT 59.103 45.455 0.00 0.00 38.31 4.75
2234 2602 4.635765 TCAATGCATACTGTTACTTCCTGC 59.364 41.667 0.00 0.00 0.00 4.85
2364 2755 3.245371 ACAGAGCCTTTGATCCAATCCAA 60.245 43.478 0.00 0.00 0.00 3.53
2369 2760 5.957771 ACTATACAGAGCCTTTGATCCAA 57.042 39.130 0.00 0.00 0.00 3.53
2460 2867 2.414161 GCGAACAATTTCAGTGGTAGGC 60.414 50.000 0.00 0.00 0.00 3.93
2776 3300 5.009710 CAGGCAGATAGTTTGAATGCATCAT 59.990 40.000 0.00 0.00 38.03 2.45
2820 3439 7.654568 ACCAAATATGCAGATGTGATTATGTG 58.345 34.615 13.20 0.00 0.00 3.21
2840 3459 3.129638 CGACAAAGACCAAAGGAACCAAA 59.870 43.478 0.00 0.00 0.00 3.28
3176 3803 5.749109 GTCTGGAGTATAAAACGATGGACTG 59.251 44.000 0.00 0.00 0.00 3.51
3184 3811 6.176975 TGCATTTGTCTGGAGTATAAAACG 57.823 37.500 0.00 0.00 0.00 3.60
3227 3854 8.776376 ATTTCAATTCTTATTTCAAACCGCAT 57.224 26.923 0.00 0.00 0.00 4.73
3259 3886 3.557595 GTGGATCTCATGTTTCATCGACC 59.442 47.826 0.00 0.00 0.00 4.79
3262 3889 4.436332 TCAGTGGATCTCATGTTTCATCG 58.564 43.478 0.00 0.00 0.00 3.84
3266 3893 4.686972 TCGATCAGTGGATCTCATGTTTC 58.313 43.478 3.50 0.00 46.36 2.78
3280 3907 4.569966 GCATCTCTTGTTTGATCGATCAGT 59.430 41.667 25.95 4.79 38.19 3.41
3296 3924 2.073252 TGATACCGAGGTGCATCTCT 57.927 50.000 24.11 9.60 0.00 3.10
3302 3930 0.172803 AGACGTTGATACCGAGGTGC 59.827 55.000 4.80 0.00 0.00 5.01
3360 3988 0.038310 AAGGAGCCTTACCAAGCCAC 59.962 55.000 0.00 0.00 34.05 5.01
3371 3999 1.279025 TTCGGCCCATAAAGGAGCCT 61.279 55.000 0.00 0.00 46.02 4.58
3589 4217 1.202915 TGAGCCAGTTTGCCATCTTGA 60.203 47.619 0.00 0.00 0.00 3.02
3609 4237 2.930040 CAGTGAAATAACAGACGGCGAT 59.070 45.455 16.62 0.00 0.00 4.58
3622 4250 0.179004 TTGCCGTCACCCAGTGAAAT 60.179 50.000 0.00 0.00 44.49 2.17
3653 4281 5.562696 CGTTACCTACCGTCAAACTAGACAA 60.563 44.000 0.00 0.00 38.43 3.18
3859 4497 2.588877 GATGATGCGGTCGGGGTG 60.589 66.667 0.00 0.00 0.00 4.61
3860 4498 3.861797 GGATGATGCGGTCGGGGT 61.862 66.667 0.00 0.00 0.00 4.95
3861 4499 4.626081 GGGATGATGCGGTCGGGG 62.626 72.222 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.