Multiple sequence alignment - TraesCS4B01G091800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G091800 chr4B 100.000 2648 0 0 1 2648 94949168 94951815 0.000000e+00 4891
1 TraesCS4B01G091800 chr4D 88.493 1095 70 20 953 2012 64402574 64403647 0.000000e+00 1273
2 TraesCS4B01G091800 chr4D 99.103 223 2 0 521 743 3719614 3719836 4.110000e-108 401
3 TraesCS4B01G091800 chr4D 94.737 190 7 3 738 926 64402394 64402581 2.580000e-75 292
4 TraesCS4B01G091800 chr4D 92.718 206 8 3 317 522 64402197 64402395 9.270000e-75 291
5 TraesCS4B01G091800 chr4A 87.050 1112 72 31 952 1998 532075085 532073981 0.000000e+00 1190
6 TraesCS4B01G091800 chr4A 98.246 228 2 2 516 742 706603980 706604206 5.310000e-107 398
7 TraesCS4B01G091800 chr4A 93.689 206 6 3 317 522 532075407 532075209 4.280000e-78 302
8 TraesCS4B01G091800 chr4A 87.778 90 4 3 840 929 532075156 532075074 6.030000e-17 99
9 TraesCS4B01G091800 chr4A 95.745 47 0 2 738 783 532075210 532075165 1.020000e-09 75
10 TraesCS4B01G091800 chr1D 87.859 626 68 7 2022 2640 299694933 299695557 0.000000e+00 728
11 TraesCS4B01G091800 chr1D 82.456 399 48 10 2019 2406 408985653 408986040 1.960000e-86 329
12 TraesCS4B01G091800 chr1D 81.183 372 56 11 2021 2389 281397151 281396791 1.200000e-73 287
13 TraesCS4B01G091800 chr2A 86.909 634 70 10 2025 2648 115142335 115142965 0.000000e+00 699
14 TraesCS4B01G091800 chr3D 85.759 632 58 15 2021 2648 271484561 271485164 7.990000e-180 640
15 TraesCS4B01G091800 chr3D 84.603 630 75 8 2024 2648 575774949 575775561 8.110000e-170 606
16 TraesCS4B01G091800 chr2D 85.884 588 77 6 2064 2648 113511396 113511980 2.890000e-174 621
17 TraesCS4B01G091800 chr6D 90.950 442 38 2 2208 2648 418532263 418532703 6.310000e-166 593
18 TraesCS4B01G091800 chrUn 83.570 633 62 13 2024 2648 39801057 39800459 2.980000e-154 555
19 TraesCS4B01G091800 chrUn 83.570 633 62 13 2024 2648 300441833 300441235 2.980000e-154 555
20 TraesCS4B01G091800 chr7A 82.031 640 88 18 2021 2648 191278392 191279016 1.090000e-143 520
21 TraesCS4B01G091800 chr7B 82.306 633 79 14 2019 2648 66817728 66818330 3.910000e-143 518
22 TraesCS4B01G091800 chr7B 96.215 317 11 1 1 317 89004925 89004610 3.910000e-143 518
23 TraesCS4B01G091800 chr7B 95.584 317 12 2 1 316 104761172 104761487 8.460000e-140 507
24 TraesCS4B01G091800 chr7B 99.548 221 1 0 521 741 23409668 23409448 1.140000e-108 403
25 TraesCS4B01G091800 chr7B 98.678 227 2 1 521 746 669205519 669205293 4.110000e-108 401
26 TraesCS4B01G091800 chr5B 95.950 321 10 3 1 320 121253440 121253122 3.910000e-143 518
27 TraesCS4B01G091800 chr5B 95.268 317 12 3 1 316 556186427 556186113 1.420000e-137 499
28 TraesCS4B01G091800 chr5B 94.637 317 13 3 1 316 585481147 585481460 3.060000e-134 488
29 TraesCS4B01G091800 chr1B 95.570 316 13 1 1 316 649309010 649309324 3.040000e-139 505
30 TraesCS4B01G091800 chr2B 94.953 317 14 2 1 316 549540829 549540514 1.830000e-136 496
31 TraesCS4B01G091800 chr3B 94.620 316 15 2 3 317 11922577 11922891 3.060000e-134 488
32 TraesCS4B01G091800 chr3B 94.393 321 12 3 1 316 790408287 790408606 3.060000e-134 488
33 TraesCS4B01G091800 chr3B 99.548 221 1 0 521 741 542749172 542749392 1.140000e-108 403
34 TraesCS4B01G091800 chr6B 99.545 220 1 0 520 739 73686 73467 4.110000e-108 401
35 TraesCS4B01G091800 chr6B 98.661 224 3 0 521 744 127754337 127754114 5.310000e-107 398
36 TraesCS4B01G091800 chr7D 99.099 222 2 0 518 739 593028568 593028789 1.480000e-107 399
37 TraesCS4B01G091800 chr5A 98.238 227 3 1 521 746 641153502 641153276 1.910000e-106 396
38 TraesCS4B01G091800 chr3A 78.351 388 67 13 2017 2394 697874191 697873811 4.410000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G091800 chr4B 94949168 94951815 2647 False 4891.000000 4891 100.000000 1 2648 1 chr4B.!!$F1 2647
1 TraesCS4B01G091800 chr4D 64402197 64403647 1450 False 618.666667 1273 91.982667 317 2012 3 chr4D.!!$F2 1695
2 TraesCS4B01G091800 chr4A 532073981 532075407 1426 True 416.500000 1190 91.065500 317 1998 4 chr4A.!!$R1 1681
3 TraesCS4B01G091800 chr1D 299694933 299695557 624 False 728.000000 728 87.859000 2022 2640 1 chr1D.!!$F1 618
4 TraesCS4B01G091800 chr2A 115142335 115142965 630 False 699.000000 699 86.909000 2025 2648 1 chr2A.!!$F1 623
5 TraesCS4B01G091800 chr3D 271484561 271485164 603 False 640.000000 640 85.759000 2021 2648 1 chr3D.!!$F1 627
6 TraesCS4B01G091800 chr3D 575774949 575775561 612 False 606.000000 606 84.603000 2024 2648 1 chr3D.!!$F2 624
7 TraesCS4B01G091800 chr2D 113511396 113511980 584 False 621.000000 621 85.884000 2064 2648 1 chr2D.!!$F1 584
8 TraesCS4B01G091800 chrUn 39800459 39801057 598 True 555.000000 555 83.570000 2024 2648 1 chrUn.!!$R1 624
9 TraesCS4B01G091800 chrUn 300441235 300441833 598 True 555.000000 555 83.570000 2024 2648 1 chrUn.!!$R2 624
10 TraesCS4B01G091800 chr7A 191278392 191279016 624 False 520.000000 520 82.031000 2021 2648 1 chr7A.!!$F1 627
11 TraesCS4B01G091800 chr7B 66817728 66818330 602 False 518.000000 518 82.306000 2019 2648 1 chr7B.!!$F1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 928 0.03496 CAGGACAGGACGGAGAGAGA 60.035 60.0 0.0 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2749 0.039035 AGCTCGACCTTCTCAGGACT 59.961 55.0 0.0 0.0 44.19 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.698803 CCTGCATGCAGTAACTACACA 58.301 47.619 38.22 6.37 42.15 3.72
21 22 3.073678 CCTGCATGCAGTAACTACACAA 58.926 45.455 38.22 6.16 42.15 3.33
22 23 3.501828 CCTGCATGCAGTAACTACACAAA 59.498 43.478 38.22 5.72 42.15 2.83
23 24 4.466828 CTGCATGCAGTAACTACACAAAC 58.533 43.478 34.76 0.00 39.10 2.93
24 25 3.879892 TGCATGCAGTAACTACACAAACA 59.120 39.130 18.46 0.00 0.00 2.83
25 26 4.518590 TGCATGCAGTAACTACACAAACAT 59.481 37.500 18.46 0.00 0.00 2.71
26 27 4.853196 GCATGCAGTAACTACACAAACATG 59.147 41.667 14.21 0.00 36.37 3.21
27 28 5.562696 GCATGCAGTAACTACACAAACATGT 60.563 40.000 14.21 0.00 35.85 3.21
28 29 6.348132 GCATGCAGTAACTACACAAACATGTA 60.348 38.462 14.21 0.00 35.85 2.29
29 30 7.626240 GCATGCAGTAACTACACAAACATGTAT 60.626 37.037 14.21 0.00 34.59 2.29
30 31 7.737972 TGCAGTAACTACACAAACATGTATT 57.262 32.000 0.00 0.00 34.59 1.89
31 32 8.834749 TGCAGTAACTACACAAACATGTATTA 57.165 30.769 0.00 0.00 34.59 0.98
32 33 8.714179 TGCAGTAACTACACAAACATGTATTAC 58.286 33.333 0.00 0.00 34.59 1.89
33 34 8.932791 GCAGTAACTACACAAACATGTATTACT 58.067 33.333 0.00 1.58 38.37 2.24
35 36 9.991906 AGTAACTACACAAACATGTATTACTGT 57.008 29.630 0.00 0.00 37.61 3.55
37 38 7.900782 ACTACACAAACATGTATTACTGTCC 57.099 36.000 0.00 0.00 34.59 4.02
38 39 6.877322 ACTACACAAACATGTATTACTGTCCC 59.123 38.462 0.00 0.00 34.59 4.46
39 40 5.876357 ACACAAACATGTATTACTGTCCCT 58.124 37.500 0.00 0.00 0.00 4.20
40 41 6.303839 ACACAAACATGTATTACTGTCCCTT 58.696 36.000 0.00 0.00 0.00 3.95
41 42 7.455058 ACACAAACATGTATTACTGTCCCTTA 58.545 34.615 0.00 0.00 0.00 2.69
42 43 7.389607 ACACAAACATGTATTACTGTCCCTTAC 59.610 37.037 0.00 0.00 0.00 2.34
43 44 6.882678 ACAAACATGTATTACTGTCCCTTACC 59.117 38.462 0.00 0.00 0.00 2.85
44 45 6.630203 AACATGTATTACTGTCCCTTACCA 57.370 37.500 0.00 0.00 0.00 3.25
45 46 6.235231 ACATGTATTACTGTCCCTTACCAG 57.765 41.667 0.00 0.00 34.82 4.00
46 47 5.130477 ACATGTATTACTGTCCCTTACCAGG 59.870 44.000 0.00 0.00 40.45 4.45
54 55 2.584608 CCTTACCAGGGCCAGACG 59.415 66.667 6.18 0.00 36.36 4.18
55 56 2.125106 CTTACCAGGGCCAGACGC 60.125 66.667 6.18 0.00 0.00 5.19
65 66 3.322466 CCAGACGCCAAGGACCCT 61.322 66.667 0.00 0.00 0.00 4.34
66 67 2.046892 CAGACGCCAAGGACCCTG 60.047 66.667 0.00 0.00 0.00 4.45
67 68 3.322466 AGACGCCAAGGACCCTGG 61.322 66.667 4.56 4.56 0.00 4.45
72 73 3.322466 CCAAGGACCCTGGCGTCT 61.322 66.667 12.89 0.00 33.07 4.18
73 74 2.046892 CAAGGACCCTGGCGTCTG 60.047 66.667 12.89 0.00 33.07 3.51
74 75 3.322466 AAGGACCCTGGCGTCTGG 61.322 66.667 5.87 5.87 33.07 3.86
75 76 3.846405 AAGGACCCTGGCGTCTGGA 62.846 63.158 15.35 0.00 34.32 3.86
76 77 4.083862 GGACCCTGGCGTCTGGAC 62.084 72.222 15.35 7.92 34.32 4.02
77 78 4.083862 GACCCTGGCGTCTGGACC 62.084 72.222 15.35 1.66 34.32 4.46
80 81 3.322466 CCTGGCGTCTGGACCCTT 61.322 66.667 7.22 0.00 34.32 3.95
81 82 1.987855 CCTGGCGTCTGGACCCTTA 60.988 63.158 7.22 0.00 34.32 2.69
82 83 1.218316 CTGGCGTCTGGACCCTTAC 59.782 63.158 0.00 0.00 0.00 2.34
83 84 2.240162 CTGGCGTCTGGACCCTTACC 62.240 65.000 0.00 0.00 0.00 2.85
84 85 2.288025 GGCGTCTGGACCCTTACCA 61.288 63.158 0.00 0.00 35.96 3.25
89 90 4.573261 TGGACCCTTACCAGGACC 57.427 61.111 0.00 0.00 44.19 4.46
90 91 1.554992 TGGACCCTTACCAGGACCA 59.445 57.895 0.00 0.00 44.19 4.02
91 92 0.546747 TGGACCCTTACCAGGACCAG 60.547 60.000 0.00 0.00 44.19 4.00
92 93 0.252558 GGACCCTTACCAGGACCAGA 60.253 60.000 0.00 0.00 44.19 3.86
93 94 0.903236 GACCCTTACCAGGACCAGAC 59.097 60.000 0.00 0.00 44.19 3.51
94 95 0.903454 ACCCTTACCAGGACCAGACG 60.903 60.000 0.00 0.00 44.19 4.18
95 96 1.218316 CCTTACCAGGACCAGACGC 59.782 63.158 0.00 0.00 44.19 5.19
96 97 1.541310 CCTTACCAGGACCAGACGCA 61.541 60.000 0.00 0.00 44.19 5.24
97 98 0.320374 CTTACCAGGACCAGACGCAA 59.680 55.000 0.00 0.00 0.00 4.85
98 99 4.870646 CCTTACCAGGACCAGACGCAAG 62.871 59.091 0.00 0.00 44.19 4.01
99 100 1.541310 TACCAGGACCAGACGCAAGG 61.541 60.000 0.00 0.00 46.39 3.61
100 101 2.583441 CCAGGACCAGACGCAAGGA 61.583 63.158 0.00 0.00 46.39 3.36
101 102 1.374758 CAGGACCAGACGCAAGGAC 60.375 63.158 0.00 0.00 46.39 3.85
102 103 1.534235 AGGACCAGACGCAAGGACT 60.534 57.895 0.00 0.00 46.39 3.85
103 104 1.079750 GGACCAGACGCAAGGACTC 60.080 63.158 0.00 0.00 46.39 3.36
104 105 1.536943 GGACCAGACGCAAGGACTCT 61.537 60.000 0.00 0.00 46.39 3.24
105 106 0.389166 GACCAGACGCAAGGACTCTG 60.389 60.000 0.00 0.00 46.39 3.35
106 107 1.079543 CCAGACGCAAGGACTCTGG 60.080 63.158 2.02 2.02 43.98 3.86
107 108 1.739562 CAGACGCAAGGACTCTGGC 60.740 63.158 0.00 0.00 46.39 4.85
111 112 2.659610 GCAAGGACTCTGGCGTCT 59.340 61.111 0.00 0.00 34.38 4.18
112 113 1.739562 GCAAGGACTCTGGCGTCTG 60.740 63.158 0.00 0.00 34.38 3.51
113 114 1.079543 CAAGGACTCTGGCGTCTGG 60.080 63.158 0.00 0.00 34.38 3.86
114 115 2.948720 AAGGACTCTGGCGTCTGGC 61.949 63.158 0.00 0.00 42.51 4.85
124 125 2.668632 CGTCTGGCCCCTTTGCTA 59.331 61.111 0.00 0.00 0.00 3.49
125 126 1.745489 CGTCTGGCCCCTTTGCTAC 60.745 63.158 0.00 0.00 0.00 3.58
126 127 1.745489 GTCTGGCCCCTTTGCTACG 60.745 63.158 0.00 0.00 0.00 3.51
127 128 2.221299 TCTGGCCCCTTTGCTACGT 61.221 57.895 0.00 0.00 0.00 3.57
128 129 1.745489 CTGGCCCCTTTGCTACGTC 60.745 63.158 0.00 0.00 0.00 4.34
129 130 2.349755 GGCCCCTTTGCTACGTCA 59.650 61.111 0.00 0.00 0.00 4.35
130 131 1.745489 GGCCCCTTTGCTACGTCAG 60.745 63.158 0.00 0.00 0.00 3.51
138 139 2.260434 GCTACGTCAGCCGGTCAA 59.740 61.111 1.90 0.00 45.23 3.18
139 140 2.092882 GCTACGTCAGCCGGTCAAC 61.093 63.158 1.90 0.00 45.23 3.18
140 141 1.287815 CTACGTCAGCCGGTCAACA 59.712 57.895 1.90 0.00 42.24 3.33
141 142 0.108804 CTACGTCAGCCGGTCAACAT 60.109 55.000 1.90 0.00 42.24 2.71
142 143 0.389296 TACGTCAGCCGGTCAACATG 60.389 55.000 1.90 0.00 42.24 3.21
143 144 2.390599 CGTCAGCCGGTCAACATGG 61.391 63.158 1.90 0.00 0.00 3.66
144 145 1.302511 GTCAGCCGGTCAACATGGT 60.303 57.895 1.90 0.00 0.00 3.55
145 146 1.003839 TCAGCCGGTCAACATGGTC 60.004 57.895 1.90 0.00 0.00 4.02
146 147 2.047274 AGCCGGTCAACATGGTCG 60.047 61.111 1.90 0.00 0.00 4.79
147 148 3.799755 GCCGGTCAACATGGTCGC 61.800 66.667 1.90 0.00 0.00 5.19
148 149 3.487202 CCGGTCAACATGGTCGCG 61.487 66.667 0.00 0.00 0.00 5.87
149 150 3.487202 CGGTCAACATGGTCGCGG 61.487 66.667 6.13 0.00 0.00 6.46
150 151 3.124921 GGTCAACATGGTCGCGGG 61.125 66.667 6.13 0.00 0.00 6.13
151 152 2.358247 GTCAACATGGTCGCGGGT 60.358 61.111 6.13 0.00 0.00 5.28
152 153 2.047655 TCAACATGGTCGCGGGTC 60.048 61.111 6.13 0.00 0.00 4.46
153 154 3.487202 CAACATGGTCGCGGGTCG 61.487 66.667 6.13 0.00 40.15 4.79
154 155 3.998672 AACATGGTCGCGGGTCGT 61.999 61.111 6.13 0.00 39.67 4.34
155 156 4.735132 ACATGGTCGCGGGTCGTG 62.735 66.667 6.13 10.34 39.67 4.35
177 178 4.087892 CCAGGGACCAGACGCCAG 62.088 72.222 0.00 0.00 0.00 4.85
178 179 4.087892 CAGGGACCAGACGCCAGG 62.088 72.222 0.00 0.00 0.00 4.45
182 183 4.083862 GACCAGACGCCAGGGTCC 62.084 72.222 10.87 0.00 44.21 4.46
183 184 4.640690 ACCAGACGCCAGGGTCCT 62.641 66.667 10.87 0.00 37.66 3.85
184 185 3.322466 CCAGACGCCAGGGTCCTT 61.322 66.667 10.87 0.00 37.66 3.36
185 186 2.046892 CAGACGCCAGGGTCCTTG 60.047 66.667 10.87 0.00 37.66 3.61
186 187 2.203788 AGACGCCAGGGTCCTTGA 60.204 61.111 10.87 0.00 37.66 3.02
187 188 2.047179 GACGCCAGGGTCCTTGAC 60.047 66.667 1.73 0.00 0.00 3.18
188 189 3.934391 GACGCCAGGGTCCTTGACG 62.934 68.421 8.17 8.17 32.65 4.35
189 190 4.003788 CGCCAGGGTCCTTGACGT 62.004 66.667 1.73 0.00 32.65 4.34
190 191 2.047179 GCCAGGGTCCTTGACGTC 60.047 66.667 9.11 9.11 32.65 4.34
191 192 2.584391 GCCAGGGTCCTTGACGTCT 61.584 63.158 17.92 0.00 32.65 4.18
192 193 1.592223 CCAGGGTCCTTGACGTCTC 59.408 63.158 17.92 2.32 32.65 3.36
193 194 1.592223 CAGGGTCCTTGACGTCTCC 59.408 63.158 17.92 10.70 32.65 3.71
194 195 1.155390 AGGGTCCTTGACGTCTCCA 59.845 57.895 17.92 0.00 32.65 3.86
195 196 0.471211 AGGGTCCTTGACGTCTCCAA 60.471 55.000 17.92 2.33 32.65 3.53
196 197 0.613777 GGGTCCTTGACGTCTCCAAT 59.386 55.000 17.92 0.00 32.65 3.16
197 198 1.676014 GGGTCCTTGACGTCTCCAATG 60.676 57.143 17.92 0.85 32.65 2.82
198 199 1.079503 GTCCTTGACGTCTCCAATGC 58.920 55.000 17.92 0.00 0.00 3.56
199 200 0.684535 TCCTTGACGTCTCCAATGCA 59.315 50.000 17.92 0.00 0.00 3.96
200 201 1.071542 TCCTTGACGTCTCCAATGCAA 59.928 47.619 17.92 0.00 0.00 4.08
201 202 1.197721 CCTTGACGTCTCCAATGCAAC 59.802 52.381 17.92 0.00 0.00 4.17
202 203 1.197721 CTTGACGTCTCCAATGCAACC 59.802 52.381 17.92 0.00 0.00 3.77
203 204 0.605319 TGACGTCTCCAATGCAACCC 60.605 55.000 17.92 0.00 0.00 4.11
204 205 0.605319 GACGTCTCCAATGCAACCCA 60.605 55.000 8.70 0.00 0.00 4.51
205 206 0.606401 ACGTCTCCAATGCAACCCAG 60.606 55.000 0.00 0.00 0.00 4.45
206 207 0.321564 CGTCTCCAATGCAACCCAGA 60.322 55.000 0.00 0.00 0.00 3.86
207 208 1.168714 GTCTCCAATGCAACCCAGAC 58.831 55.000 0.00 0.00 0.00 3.51
208 209 0.321564 TCTCCAATGCAACCCAGACG 60.322 55.000 0.00 0.00 0.00 4.18
209 210 0.606401 CTCCAATGCAACCCAGACGT 60.606 55.000 0.00 0.00 0.00 4.34
210 211 0.605319 TCCAATGCAACCCAGACGTC 60.605 55.000 7.70 7.70 0.00 4.34
211 212 0.888736 CCAATGCAACCCAGACGTCA 60.889 55.000 19.50 0.00 0.00 4.35
212 213 0.518636 CAATGCAACCCAGACGTCAG 59.481 55.000 19.50 10.04 0.00 3.51
213 214 0.606401 AATGCAACCCAGACGTCAGG 60.606 55.000 19.47 19.47 0.00 3.86
215 216 2.879233 GCAACCCAGACGTCAGGGA 61.879 63.158 42.66 0.00 44.73 4.20
216 217 1.983224 CAACCCAGACGTCAGGGAT 59.017 57.895 42.66 32.62 44.73 3.85
217 218 0.391661 CAACCCAGACGTCAGGGATG 60.392 60.000 42.66 37.21 44.73 3.51
218 219 0.836400 AACCCAGACGTCAGGGATGT 60.836 55.000 42.66 27.31 44.73 3.06
219 220 0.836400 ACCCAGACGTCAGGGATGTT 60.836 55.000 42.66 23.82 44.73 2.71
220 221 0.391661 CCCAGACGTCAGGGATGTTG 60.392 60.000 35.99 14.46 44.73 3.33
221 222 0.391661 CCAGACGTCAGGGATGTTGG 60.392 60.000 18.73 10.20 31.35 3.77
222 223 1.021390 CAGACGTCAGGGATGTTGGC 61.021 60.000 19.50 0.00 31.35 4.52
224 225 2.047274 CGTCAGGGATGTTGGCGT 60.047 61.111 0.00 0.00 38.73 5.68
225 226 2.100631 CGTCAGGGATGTTGGCGTC 61.101 63.158 0.00 0.00 38.73 5.19
226 227 1.003839 GTCAGGGATGTTGGCGTCA 60.004 57.895 0.00 0.00 32.40 4.35
227 228 1.003839 TCAGGGATGTTGGCGTCAC 60.004 57.895 0.00 0.00 34.31 3.67
228 229 2.040544 CAGGGATGTTGGCGTCACC 61.041 63.158 0.00 0.00 34.63 4.02
272 273 3.810310 TTTTTGCAACCGAGGTCAATT 57.190 38.095 0.00 0.00 0.00 2.32
273 274 3.363341 TTTTGCAACCGAGGTCAATTC 57.637 42.857 0.00 0.00 0.00 2.17
274 275 0.871722 TTGCAACCGAGGTCAATTCG 59.128 50.000 0.00 0.00 37.78 3.34
282 283 3.405170 CGAGGTCAATTCGGGAATTTG 57.595 47.619 3.97 1.77 38.84 2.32
283 284 2.747446 CGAGGTCAATTCGGGAATTTGT 59.253 45.455 3.97 0.00 38.84 2.83
284 285 3.190535 CGAGGTCAATTCGGGAATTTGTT 59.809 43.478 3.97 0.00 38.84 2.83
285 286 4.393680 CGAGGTCAATTCGGGAATTTGTTA 59.606 41.667 3.97 0.00 38.84 2.41
286 287 5.447279 CGAGGTCAATTCGGGAATTTGTTAG 60.447 44.000 3.97 0.00 38.84 2.34
287 288 4.157840 AGGTCAATTCGGGAATTTGTTAGC 59.842 41.667 3.97 1.73 38.84 3.09
288 289 4.082463 GGTCAATTCGGGAATTTGTTAGCA 60.082 41.667 3.97 0.00 38.84 3.49
289 290 4.857037 GTCAATTCGGGAATTTGTTAGCAC 59.143 41.667 3.97 0.00 38.84 4.40
290 291 4.520874 TCAATTCGGGAATTTGTTAGCACA 59.479 37.500 3.97 0.00 38.84 4.57
291 292 5.010112 TCAATTCGGGAATTTGTTAGCACAA 59.990 36.000 3.97 0.00 41.39 3.33
301 302 5.407407 TTTGTTAGCACAAAGGGTCAAAA 57.593 34.783 0.00 0.00 46.06 2.44
302 303 5.606348 TTGTTAGCACAAAGGGTCAAAAT 57.394 34.783 0.00 0.00 40.10 1.82
303 304 6.716934 TTGTTAGCACAAAGGGTCAAAATA 57.283 33.333 0.00 0.00 40.10 1.40
304 305 6.325919 TGTTAGCACAAAGGGTCAAAATAG 57.674 37.500 0.00 0.00 0.00 1.73
305 306 5.830991 TGTTAGCACAAAGGGTCAAAATAGT 59.169 36.000 0.00 0.00 0.00 2.12
306 307 4.853924 AGCACAAAGGGTCAAAATAGTG 57.146 40.909 0.00 0.00 0.00 2.74
307 308 4.469657 AGCACAAAGGGTCAAAATAGTGA 58.530 39.130 0.00 0.00 0.00 3.41
308 309 5.079643 AGCACAAAGGGTCAAAATAGTGAT 58.920 37.500 0.00 0.00 0.00 3.06
309 310 5.539955 AGCACAAAGGGTCAAAATAGTGATT 59.460 36.000 0.00 0.00 0.00 2.57
310 311 6.041979 AGCACAAAGGGTCAAAATAGTGATTT 59.958 34.615 0.00 0.00 36.82 2.17
311 312 6.705825 GCACAAAGGGTCAAAATAGTGATTTT 59.294 34.615 0.00 0.00 44.44 1.82
365 366 0.521735 GCGAGGCCTAGTTTGTTTGG 59.478 55.000 14.88 0.00 0.00 3.28
520 521 1.207791 CTCCTCCTTGGTGGCTACAT 58.792 55.000 1.52 0.00 37.07 2.29
521 522 2.398588 CTCCTCCTTGGTGGCTACATA 58.601 52.381 1.52 0.00 37.07 2.29
522 523 2.103263 CTCCTCCTTGGTGGCTACATAC 59.897 54.545 1.52 0.00 37.07 2.39
523 524 2.119495 CCTCCTTGGTGGCTACATACT 58.881 52.381 1.52 0.00 35.26 2.12
524 525 3.052414 TCCTCCTTGGTGGCTACATACTA 60.052 47.826 1.52 0.00 37.07 1.82
525 526 3.069729 CCTCCTTGGTGGCTACATACTAC 59.930 52.174 1.52 0.00 35.26 2.73
526 527 3.036091 TCCTTGGTGGCTACATACTACC 58.964 50.000 1.52 0.00 35.26 3.18
527 528 3.039011 CCTTGGTGGCTACATACTACCT 58.961 50.000 1.52 0.00 32.68 3.08
528 529 3.069729 CCTTGGTGGCTACATACTACCTC 59.930 52.174 1.52 0.00 32.68 3.85
529 530 2.674420 TGGTGGCTACATACTACCTCC 58.326 52.381 1.52 0.00 36.56 4.30
530 531 1.612463 GGTGGCTACATACTACCTCCG 59.388 57.143 1.52 0.00 0.00 4.63
531 532 2.305009 GTGGCTACATACTACCTCCGT 58.695 52.381 0.00 0.00 0.00 4.69
532 533 2.292845 GTGGCTACATACTACCTCCGTC 59.707 54.545 0.00 0.00 0.00 4.79
533 534 1.885233 GGCTACATACTACCTCCGTCC 59.115 57.143 0.00 0.00 0.00 4.79
534 535 1.885233 GCTACATACTACCTCCGTCCC 59.115 57.143 0.00 0.00 0.00 4.46
535 536 2.149578 CTACATACTACCTCCGTCCCG 58.850 57.143 0.00 0.00 0.00 5.14
546 547 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
547 548 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
548 549 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
549 550 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
550 551 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
551 552 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
552 553 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
553 554 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
554 555 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
555 556 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
556 557 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
557 558 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
558 559 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
559 560 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
560 561 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
561 562 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
562 563 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
563 564 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
564 565 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
565 566 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
566 567 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
567 568 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
568 569 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
569 570 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
570 571 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
571 572 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
572 573 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
573 574 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
574 575 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
575 576 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
576 577 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
577 578 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
635 636 9.706691 ATATATTTAGAAACTACATCCGTGTGG 57.293 33.333 0.00 0.00 42.04 4.17
647 648 2.253610 TCCGTGTGGAAATCTAGTGGT 58.746 47.619 0.00 0.00 42.85 4.16
648 649 3.433343 TCCGTGTGGAAATCTAGTGGTA 58.567 45.455 0.00 0.00 42.85 3.25
649 650 4.028131 TCCGTGTGGAAATCTAGTGGTAT 58.972 43.478 0.00 0.00 42.85 2.73
650 651 5.202765 TCCGTGTGGAAATCTAGTGGTATA 58.797 41.667 0.00 0.00 42.85 1.47
651 652 5.068198 TCCGTGTGGAAATCTAGTGGTATAC 59.932 44.000 0.00 0.00 42.85 1.47
652 653 5.068723 CCGTGTGGAAATCTAGTGGTATACT 59.931 44.000 2.25 0.00 39.66 2.12
653 654 6.406624 CCGTGTGGAAATCTAGTGGTATACTT 60.407 42.308 2.25 0.00 37.99 2.24
654 655 7.039882 CGTGTGGAAATCTAGTGGTATACTTT 58.960 38.462 2.25 0.00 40.89 2.66
655 656 7.548075 CGTGTGGAAATCTAGTGGTATACTTTT 59.452 37.037 2.25 0.00 40.89 2.27
656 657 8.880750 GTGTGGAAATCTAGTGGTATACTTTTC 58.119 37.037 2.25 0.00 40.89 2.29
657 658 8.598916 TGTGGAAATCTAGTGGTATACTTTTCA 58.401 33.333 2.25 0.00 40.89 2.69
658 659 9.614792 GTGGAAATCTAGTGGTATACTTTTCAT 57.385 33.333 2.25 0.00 40.89 2.57
659 660 9.613428 TGGAAATCTAGTGGTATACTTTTCATG 57.387 33.333 2.25 0.00 40.89 3.07
660 661 9.832445 GGAAATCTAGTGGTATACTTTTCATGA 57.168 33.333 2.25 0.00 40.89 3.07
693 694 9.787532 ACACATATTTAATTCCTCAAATCGTTG 57.212 29.630 0.00 0.00 35.95 4.10
696 697 9.450807 CATATTTAATTCCTCAAATCGTTGACC 57.549 33.333 0.00 0.00 38.88 4.02
697 698 7.703058 ATTTAATTCCTCAAATCGTTGACCT 57.297 32.000 0.00 0.00 38.88 3.85
698 699 8.801882 ATTTAATTCCTCAAATCGTTGACCTA 57.198 30.769 0.00 0.00 38.88 3.08
699 700 7.843490 TTAATTCCTCAAATCGTTGACCTAG 57.157 36.000 0.00 0.00 38.88 3.02
700 701 5.677319 ATTCCTCAAATCGTTGACCTAGA 57.323 39.130 0.00 0.00 38.88 2.43
701 702 5.477607 TTCCTCAAATCGTTGACCTAGAA 57.522 39.130 0.00 0.00 38.88 2.10
702 703 4.817517 TCCTCAAATCGTTGACCTAGAAC 58.182 43.478 0.00 0.00 38.88 3.01
703 704 4.527038 TCCTCAAATCGTTGACCTAGAACT 59.473 41.667 0.00 0.00 38.88 3.01
704 705 5.713389 TCCTCAAATCGTTGACCTAGAACTA 59.287 40.000 0.00 0.00 38.88 2.24
705 706 5.805994 CCTCAAATCGTTGACCTAGAACTAC 59.194 44.000 0.00 0.00 38.88 2.73
706 707 5.396484 TCAAATCGTTGACCTAGAACTACG 58.604 41.667 13.20 13.20 38.88 3.51
707 708 2.907910 TCGTTGACCTAGAACTACGC 57.092 50.000 14.05 0.00 35.88 4.42
708 709 1.129251 TCGTTGACCTAGAACTACGCG 59.871 52.381 3.53 3.53 35.88 6.01
709 710 1.129251 CGTTGACCTAGAACTACGCGA 59.871 52.381 15.93 0.00 0.00 5.87
710 711 2.413239 CGTTGACCTAGAACTACGCGAA 60.413 50.000 15.93 0.00 0.00 4.70
711 712 3.730061 CGTTGACCTAGAACTACGCGAAT 60.730 47.826 15.93 0.00 0.00 3.34
712 713 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
713 714 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
714 715 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
715 716 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
716 717 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
717 718 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
718 719 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
719 720 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
720 721 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
721 722 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
722 723 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
723 724 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
724 725 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
725 726 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
726 727 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
727 728 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
728 729 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
729 730 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
730 731 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
731 732 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
732 733 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
733 734 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
802 804 7.981225 GCATCTCCATTTCTCTATTATCTCTCC 59.019 40.741 0.00 0.00 0.00 3.71
806 808 6.028780 CCATTTCTCTATTATCTCTCCCCCT 58.971 44.000 0.00 0.00 0.00 4.79
807 809 6.156083 CCATTTCTCTATTATCTCTCCCCCTC 59.844 46.154 0.00 0.00 0.00 4.30
918 920 0.103208 GATAGGCACAGGACAGGACG 59.897 60.000 0.00 0.00 0.00 4.79
926 928 0.034960 CAGGACAGGACGGAGAGAGA 60.035 60.000 0.00 0.00 0.00 3.10
927 929 0.254747 AGGACAGGACGGAGAGAGAG 59.745 60.000 0.00 0.00 0.00 3.20
928 930 0.253610 GGACAGGACGGAGAGAGAGA 59.746 60.000 0.00 0.00 0.00 3.10
929 931 1.663695 GACAGGACGGAGAGAGAGAG 58.336 60.000 0.00 0.00 0.00 3.20
930 932 1.208535 GACAGGACGGAGAGAGAGAGA 59.791 57.143 0.00 0.00 0.00 3.10
931 933 1.209504 ACAGGACGGAGAGAGAGAGAG 59.790 57.143 0.00 0.00 0.00 3.20
932 934 1.484653 CAGGACGGAGAGAGAGAGAGA 59.515 57.143 0.00 0.00 0.00 3.10
933 935 1.762957 AGGACGGAGAGAGAGAGAGAG 59.237 57.143 0.00 0.00 0.00 3.20
934 936 1.760613 GGACGGAGAGAGAGAGAGAGA 59.239 57.143 0.00 0.00 0.00 3.10
935 937 2.224066 GGACGGAGAGAGAGAGAGAGAG 60.224 59.091 0.00 0.00 0.00 3.20
936 938 2.693591 GACGGAGAGAGAGAGAGAGAGA 59.306 54.545 0.00 0.00 0.00 3.10
937 939 2.695666 ACGGAGAGAGAGAGAGAGAGAG 59.304 54.545 0.00 0.00 0.00 3.20
938 940 2.959030 CGGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
939 941 3.005261 CGGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
940 942 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
941 943 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
942 944 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
943 945 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
944 946 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
945 947 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
946 948 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
947 949 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
948 950 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
949 951 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
950 952 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
951 953 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
952 954 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
953 955 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
954 956 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
955 957 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
956 958 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
957 959 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
958 960 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
959 961 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
960 962 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
971 973 1.678101 GAGAGAGAGAGGAAGCAGCTC 59.322 57.143 0.00 0.00 0.00 4.09
988 990 1.306141 TCATCCCAGCCGGAGAACT 60.306 57.895 5.05 0.00 46.60 3.01
1064 1066 1.048601 TCCGATGTTCCCATAGCTCC 58.951 55.000 0.00 0.00 0.00 4.70
1088 1090 3.750130 TCTGCTCTCTGTGAAATGAAAGC 59.250 43.478 0.00 0.00 0.00 3.51
1098 1100 3.730715 GTGAAATGAAAGCTTGGTCAACG 59.269 43.478 0.00 0.00 0.00 4.10
1099 1101 3.380004 TGAAATGAAAGCTTGGTCAACGT 59.620 39.130 0.00 0.00 0.00 3.99
1100 1102 4.576873 TGAAATGAAAGCTTGGTCAACGTA 59.423 37.500 0.00 0.00 0.00 3.57
1136 1138 1.144936 GAGCCGGAGAGGTGGATTG 59.855 63.158 5.05 0.00 43.70 2.67
1150 1152 3.119495 GGTGGATTGATTAGCACAACCAC 60.119 47.826 0.00 0.00 42.01 4.16
1178 1198 3.927163 TTTCGTTCGCCTCCCTCGC 62.927 63.158 0.00 0.00 0.00 5.03
1193 1213 1.495878 CTCGCTTCCATCGATCTTGG 58.504 55.000 0.00 0.00 35.25 3.61
1195 1215 0.531532 CGCTTCCATCGATCTTGGCT 60.532 55.000 0.00 0.00 34.06 4.75
1202 1222 2.484417 CCATCGATCTTGGCTGCTACTT 60.484 50.000 0.00 0.00 0.00 2.24
1267 1291 1.813859 CTACTTCATCGGCCGTCCA 59.186 57.895 27.15 6.18 0.00 4.02
1348 1372 1.153369 TGCGCTGAATACTCCTGGC 60.153 57.895 9.73 0.00 0.00 4.85
1428 1477 1.453524 CTGTTCGTCTTCTGTTGCTCG 59.546 52.381 0.00 0.00 0.00 5.03
1526 1575 2.095372 GGCCAAATTGTACGACAGCTAC 59.905 50.000 0.00 0.00 0.00 3.58
1582 1632 0.710567 CGAGCTGTGTCTAACGCTTG 59.289 55.000 0.00 0.00 38.29 4.01
1664 1714 4.329545 GACCGACAAGCCCAGCCA 62.330 66.667 0.00 0.00 0.00 4.75
1707 1757 2.308866 ACGGGAGGATTTGAAGTGGAAT 59.691 45.455 0.00 0.00 0.00 3.01
1708 1758 2.945668 CGGGAGGATTTGAAGTGGAATC 59.054 50.000 0.00 0.00 0.00 2.52
1709 1759 2.945668 GGGAGGATTTGAAGTGGAATCG 59.054 50.000 0.00 0.00 33.98 3.34
1710 1760 2.945668 GGAGGATTTGAAGTGGAATCGG 59.054 50.000 0.00 0.00 33.98 4.18
1711 1761 2.945668 GAGGATTTGAAGTGGAATCGGG 59.054 50.000 0.00 0.00 33.98 5.14
1712 1762 2.308866 AGGATTTGAAGTGGAATCGGGT 59.691 45.455 0.00 0.00 33.98 5.28
1713 1763 2.683362 GGATTTGAAGTGGAATCGGGTC 59.317 50.000 0.00 0.00 33.98 4.46
1714 1764 2.194201 TTTGAAGTGGAATCGGGTCC 57.806 50.000 0.00 0.00 38.27 4.46
1715 1765 1.060729 TTGAAGTGGAATCGGGTCCA 58.939 50.000 4.09 4.09 45.72 4.02
1783 1846 3.145286 GGAAGCTCTGCTCTGTTTTTCT 58.855 45.455 0.00 0.00 38.25 2.52
1785 1848 4.535116 GAAGCTCTGCTCTGTTTTTCTTG 58.465 43.478 0.00 0.00 38.25 3.02
1834 1897 2.267426 TCATTCGTGTAATGCCGACAG 58.733 47.619 0.00 0.00 44.03 3.51
1848 1911 1.599992 CGACAGACGTAAACTCGACC 58.400 55.000 0.00 0.00 37.22 4.79
1858 1921 2.793278 AAACTCGACCAAATTGCCAC 57.207 45.000 0.00 0.00 0.00 5.01
2008 2096 6.291377 ACACACATATCTCTCTCTCTCTCTC 58.709 44.000 0.00 0.00 0.00 3.20
2009 2097 6.100279 ACACACATATCTCTCTCTCTCTCTCT 59.900 42.308 0.00 0.00 0.00 3.10
2010 2098 6.648310 CACACATATCTCTCTCTCTCTCTCTC 59.352 46.154 0.00 0.00 0.00 3.20
2011 2099 6.556495 ACACATATCTCTCTCTCTCTCTCTCT 59.444 42.308 0.00 0.00 0.00 3.10
2012 2100 7.095910 CACATATCTCTCTCTCTCTCTCTCTC 58.904 46.154 0.00 0.00 0.00 3.20
2013 2101 7.015680 ACATATCTCTCTCTCTCTCTCTCTCT 58.984 42.308 0.00 0.00 0.00 3.10
2014 2102 7.178274 ACATATCTCTCTCTCTCTCTCTCTCTC 59.822 44.444 0.00 0.00 0.00 3.20
2015 2103 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2016 2104 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2017 2105 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2074 2164 2.115266 CCGTGAAGGCCTTTGGGT 59.885 61.111 21.54 0.00 34.45 4.51
2117 2210 1.144057 CTGGGGGATCGAGTTTCCG 59.856 63.158 0.00 0.00 33.82 4.30
2122 2216 2.183555 GATCGAGTTTCCGGCCGT 59.816 61.111 26.12 4.16 0.00 5.68
2204 2299 5.461032 AAAAGGCACAAATTTACCGATCA 57.539 34.783 0.00 0.00 0.00 2.92
2205 2300 5.659440 AAAGGCACAAATTTACCGATCAT 57.341 34.783 0.00 0.00 0.00 2.45
2206 2301 4.900635 AGGCACAAATTTACCGATCATC 57.099 40.909 0.00 0.00 0.00 2.92
2207 2302 4.269183 AGGCACAAATTTACCGATCATCA 58.731 39.130 0.00 0.00 0.00 3.07
2208 2303 4.889409 AGGCACAAATTTACCGATCATCAT 59.111 37.500 0.00 0.00 0.00 2.45
2209 2304 4.977963 GGCACAAATTTACCGATCATCATG 59.022 41.667 0.00 0.00 0.00 3.07
2210 2305 4.442073 GCACAAATTTACCGATCATCATGC 59.558 41.667 0.00 0.00 0.00 4.06
2249 2366 4.451150 GCCACAGGTCGGCGATCA 62.451 66.667 23.68 0.00 40.35 2.92
2315 2459 0.603975 GAACTCAAACGGCTGGCTCT 60.604 55.000 0.00 0.00 0.00 4.09
2418 2592 3.427749 TAGGCATGGGCATGGGCA 61.428 61.111 0.00 0.00 43.71 5.36
2422 2599 2.939261 GCATGGGCATGGGCATAGC 61.939 63.158 0.00 0.00 43.71 2.97
2499 2676 1.032114 GTACCATGCCTTCACCTGCC 61.032 60.000 0.00 0.00 0.00 4.85
2510 2687 3.319198 ACCTGCCCGTCCATCGTT 61.319 61.111 0.00 0.00 37.94 3.85
2517 2694 1.705337 CCCGTCCATCGTTGACATGC 61.705 60.000 0.00 0.00 37.94 4.06
2552 2729 2.642254 CGCCAGGTCGGTGTTCCTA 61.642 63.158 0.00 0.00 40.72 2.94
2566 2743 0.387929 TTCCTATTCTTCGCGGCGAT 59.612 50.000 26.95 13.72 35.23 4.58
2570 2749 2.390938 CTATTCTTCGCGGCGATGTTA 58.609 47.619 29.37 22.03 35.23 2.41
2641 2830 1.484240 CCTCGCCTCAGATTTCTCCTT 59.516 52.381 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.582613 ACATGTTTGTGTAGTTACTGCATGCAG 62.583 40.741 39.47 39.47 41.26 4.41
2 3 3.879892 TGTTTGTGTAGTTACTGCATGCA 59.120 39.130 21.29 21.29 0.00 3.96
3 4 4.481930 TGTTTGTGTAGTTACTGCATGC 57.518 40.909 11.82 11.82 0.00 4.06
6 7 7.737972 AATACATGTTTGTGTAGTTACTGCA 57.262 32.000 2.30 0.00 37.93 4.41
7 8 8.932791 AGTAATACATGTTTGTGTAGTTACTGC 58.067 33.333 2.30 0.00 37.42 4.40
9 10 9.991906 ACAGTAATACATGTTTGTGTAGTTACT 57.008 29.630 2.30 4.20 38.15 2.24
11 12 9.426837 GGACAGTAATACATGTTTGTGTAGTTA 57.573 33.333 2.30 0.00 37.93 2.24
12 13 7.389607 GGGACAGTAATACATGTTTGTGTAGTT 59.610 37.037 2.30 0.00 37.93 2.24
13 14 6.877322 GGGACAGTAATACATGTTTGTGTAGT 59.123 38.462 2.30 0.00 37.93 2.73
14 15 7.103641 AGGGACAGTAATACATGTTTGTGTAG 58.896 38.462 2.30 0.00 37.93 2.74
15 16 7.011499 AGGGACAGTAATACATGTTTGTGTA 57.989 36.000 2.30 0.00 38.79 2.90
16 17 5.876357 AGGGACAGTAATACATGTTTGTGT 58.124 37.500 2.30 6.92 36.53 3.72
17 18 6.817765 AAGGGACAGTAATACATGTTTGTG 57.182 37.500 2.30 4.04 36.53 3.33
18 19 6.882678 GGTAAGGGACAGTAATACATGTTTGT 59.117 38.462 2.30 1.50 39.98 2.83
19 20 6.882140 TGGTAAGGGACAGTAATACATGTTTG 59.118 38.462 2.30 0.00 0.00 2.93
20 21 7.023171 TGGTAAGGGACAGTAATACATGTTT 57.977 36.000 2.30 0.95 0.00 2.83
21 22 6.352737 CCTGGTAAGGGACAGTAATACATGTT 60.353 42.308 2.30 0.00 40.27 2.71
22 23 5.130477 CCTGGTAAGGGACAGTAATACATGT 59.870 44.000 2.69 2.69 40.27 3.21
23 24 5.611374 CCTGGTAAGGGACAGTAATACATG 58.389 45.833 0.00 0.00 40.27 3.21
24 25 5.888982 CCTGGTAAGGGACAGTAATACAT 57.111 43.478 0.00 0.00 40.27 2.29
37 38 2.584608 CGTCTGGCCCTGGTAAGG 59.415 66.667 0.00 0.00 44.06 2.69
38 39 2.125106 GCGTCTGGCCCTGGTAAG 60.125 66.667 0.00 0.00 34.80 2.34
48 49 3.322466 AGGGTCCTTGGCGTCTGG 61.322 66.667 0.00 0.00 0.00 3.86
49 50 2.046892 CAGGGTCCTTGGCGTCTG 60.047 66.667 0.00 0.00 0.00 3.51
50 51 3.322466 CCAGGGTCCTTGGCGTCT 61.322 66.667 7.17 0.00 0.00 4.18
55 56 3.322466 AGACGCCAGGGTCCTTGG 61.322 66.667 15.83 15.83 37.66 3.61
56 57 2.046892 CAGACGCCAGGGTCCTTG 60.047 66.667 10.87 0.00 37.66 3.61
57 58 3.322466 CCAGACGCCAGGGTCCTT 61.322 66.667 10.87 0.00 37.66 3.36
58 59 4.316823 TCCAGACGCCAGGGTCCT 62.317 66.667 10.87 0.00 37.66 3.85
59 60 4.083862 GTCCAGACGCCAGGGTCC 62.084 72.222 10.87 0.00 37.66 4.46
60 61 4.083862 GGTCCAGACGCCAGGGTC 62.084 72.222 6.74 6.74 37.19 4.46
63 64 1.987855 TAAGGGTCCAGACGCCAGG 60.988 63.158 10.87 0.00 44.27 4.45
64 65 1.218316 GTAAGGGTCCAGACGCCAG 59.782 63.158 10.87 0.00 44.27 4.85
65 66 2.288025 GGTAAGGGTCCAGACGCCA 61.288 63.158 10.87 0.00 44.27 5.69
66 67 2.288025 TGGTAAGGGTCCAGACGCC 61.288 63.158 10.87 4.53 44.27 5.68
67 68 3.384348 TGGTAAGGGTCCAGACGC 58.616 61.111 6.74 6.74 43.63 5.19
72 73 0.546747 CTGGTCCTGGTAAGGGTCCA 60.547 60.000 0.00 8.50 44.62 4.02
73 74 0.252558 TCTGGTCCTGGTAAGGGTCC 60.253 60.000 0.00 0.00 44.62 4.46
74 75 0.903236 GTCTGGTCCTGGTAAGGGTC 59.097 60.000 0.00 0.00 44.62 4.46
75 76 0.903454 CGTCTGGTCCTGGTAAGGGT 60.903 60.000 0.00 0.00 44.62 4.34
76 77 1.898154 CGTCTGGTCCTGGTAAGGG 59.102 63.158 0.00 0.00 44.62 3.95
77 78 1.218316 GCGTCTGGTCCTGGTAAGG 59.782 63.158 0.00 0.00 46.06 2.69
78 79 0.320374 TTGCGTCTGGTCCTGGTAAG 59.680 55.000 0.00 0.00 0.00 2.34
79 80 0.320374 CTTGCGTCTGGTCCTGGTAA 59.680 55.000 0.00 0.00 0.00 2.85
80 81 1.541310 CCTTGCGTCTGGTCCTGGTA 61.541 60.000 0.00 0.00 0.00 3.25
81 82 2.743718 CTTGCGTCTGGTCCTGGT 59.256 61.111 0.00 0.00 0.00 4.00
82 83 2.046892 CCTTGCGTCTGGTCCTGG 60.047 66.667 0.00 0.00 0.00 4.45
83 84 1.374758 GTCCTTGCGTCTGGTCCTG 60.375 63.158 0.00 0.00 0.00 3.86
84 85 1.534235 AGTCCTTGCGTCTGGTCCT 60.534 57.895 0.00 0.00 0.00 3.85
85 86 1.079750 GAGTCCTTGCGTCTGGTCC 60.080 63.158 0.00 0.00 0.00 4.46
86 87 0.389166 CAGAGTCCTTGCGTCTGGTC 60.389 60.000 0.00 0.00 35.11 4.02
87 88 1.668294 CAGAGTCCTTGCGTCTGGT 59.332 57.895 0.00 0.00 35.11 4.00
88 89 4.586618 CAGAGTCCTTGCGTCTGG 57.413 61.111 0.00 0.00 35.11 3.86
89 90 1.739562 GCCAGAGTCCTTGCGTCTG 60.740 63.158 0.00 0.00 37.95 3.51
90 91 2.659610 GCCAGAGTCCTTGCGTCT 59.340 61.111 0.00 0.00 0.00 4.18
91 92 2.811317 CGCCAGAGTCCTTGCGTC 60.811 66.667 9.61 0.00 45.85 5.19
94 95 1.739562 CAGACGCCAGAGTCCTTGC 60.740 63.158 0.00 0.00 41.83 4.01
95 96 1.079543 CCAGACGCCAGAGTCCTTG 60.080 63.158 0.00 0.00 41.83 3.61
96 97 2.948720 GCCAGACGCCAGAGTCCTT 61.949 63.158 0.00 0.00 41.83 3.36
97 98 3.386237 GCCAGACGCCAGAGTCCT 61.386 66.667 0.00 0.00 41.83 3.85
106 107 3.622060 TAGCAAAGGGGCCAGACGC 62.622 63.158 4.39 1.97 0.00 5.19
107 108 1.745489 GTAGCAAAGGGGCCAGACG 60.745 63.158 4.39 0.00 0.00 4.18
108 109 1.745489 CGTAGCAAAGGGGCCAGAC 60.745 63.158 4.39 0.00 0.00 3.51
109 110 2.180159 GACGTAGCAAAGGGGCCAGA 62.180 60.000 4.39 0.00 0.00 3.86
110 111 1.745489 GACGTAGCAAAGGGGCCAG 60.745 63.158 4.39 0.00 0.00 4.85
111 112 2.349755 GACGTAGCAAAGGGGCCA 59.650 61.111 4.39 0.00 0.00 5.36
112 113 1.745489 CTGACGTAGCAAAGGGGCC 60.745 63.158 0.00 0.00 0.00 5.80
113 114 3.890674 CTGACGTAGCAAAGGGGC 58.109 61.111 0.00 0.00 0.00 5.80
122 123 0.108804 ATGTTGACCGGCTGACGTAG 60.109 55.000 0.00 0.00 42.24 3.51
123 124 0.389296 CATGTTGACCGGCTGACGTA 60.389 55.000 0.00 0.00 42.24 3.57
124 125 1.667830 CATGTTGACCGGCTGACGT 60.668 57.895 0.00 0.00 42.24 4.34
125 126 2.390599 CCATGTTGACCGGCTGACG 61.391 63.158 0.00 0.00 43.80 4.35
126 127 1.298859 GACCATGTTGACCGGCTGAC 61.299 60.000 0.00 0.00 0.00 3.51
127 128 1.003839 GACCATGTTGACCGGCTGA 60.004 57.895 0.00 0.00 0.00 4.26
128 129 2.390599 CGACCATGTTGACCGGCTG 61.391 63.158 0.00 0.00 0.00 4.85
129 130 2.047274 CGACCATGTTGACCGGCT 60.047 61.111 0.00 0.00 0.00 5.52
130 131 3.799755 GCGACCATGTTGACCGGC 61.800 66.667 0.00 0.00 0.00 6.13
131 132 3.487202 CGCGACCATGTTGACCGG 61.487 66.667 0.00 0.00 0.00 5.28
132 133 3.487202 CCGCGACCATGTTGACCG 61.487 66.667 8.23 0.00 0.00 4.79
133 134 3.124921 CCCGCGACCATGTTGACC 61.125 66.667 8.23 0.00 0.00 4.02
134 135 2.358247 ACCCGCGACCATGTTGAC 60.358 61.111 8.23 0.00 0.00 3.18
135 136 2.047655 GACCCGCGACCATGTTGA 60.048 61.111 8.23 0.00 0.00 3.18
136 137 3.487202 CGACCCGCGACCATGTTG 61.487 66.667 8.23 0.00 44.57 3.33
137 138 3.998672 ACGACCCGCGACCATGTT 61.999 61.111 8.23 0.00 44.57 2.71
138 139 4.735132 CACGACCCGCGACCATGT 62.735 66.667 8.23 0.00 44.57 3.21
160 161 4.087892 CTGGCGTCTGGTCCCTGG 62.088 72.222 0.00 0.00 0.00 4.45
161 162 4.087892 CCTGGCGTCTGGTCCCTG 62.088 72.222 4.52 0.00 0.00 4.45
164 165 4.083862 GACCCTGGCGTCTGGTCC 62.084 72.222 15.71 2.65 42.21 4.46
165 166 4.083862 GGACCCTGGCGTCTGGTC 62.084 72.222 17.61 17.61 46.31 4.02
166 167 4.640690 AGGACCCTGGCGTCTGGT 62.641 66.667 12.29 6.86 33.07 4.00
167 168 3.322466 AAGGACCCTGGCGTCTGG 61.322 66.667 5.87 5.87 33.07 3.86
168 169 2.046892 CAAGGACCCTGGCGTCTG 60.047 66.667 12.89 0.00 33.07 3.51
169 170 2.203788 TCAAGGACCCTGGCGTCT 60.204 61.111 12.89 0.00 33.07 4.18
170 171 2.047179 GTCAAGGACCCTGGCGTC 60.047 66.667 6.74 6.74 0.00 5.19
171 172 4.003788 CGTCAAGGACCCTGGCGT 62.004 66.667 8.99 0.00 0.00 5.68
172 173 3.934391 GACGTCAAGGACCCTGGCG 62.934 68.421 15.46 15.46 0.00 5.69
173 174 2.047179 GACGTCAAGGACCCTGGC 60.047 66.667 11.55 0.00 0.00 4.85
174 175 1.592223 GAGACGTCAAGGACCCTGG 59.408 63.158 19.50 0.00 0.00 4.45
175 176 1.185618 TGGAGACGTCAAGGACCCTG 61.186 60.000 19.50 0.00 0.00 4.45
176 177 0.471211 TTGGAGACGTCAAGGACCCT 60.471 55.000 19.50 0.00 0.00 4.34
177 178 0.613777 ATTGGAGACGTCAAGGACCC 59.386 55.000 19.50 8.94 0.00 4.46
178 179 1.726853 CATTGGAGACGTCAAGGACC 58.273 55.000 19.50 12.59 0.00 4.46
179 180 1.079503 GCATTGGAGACGTCAAGGAC 58.920 55.000 19.50 3.27 0.00 3.85
180 181 0.684535 TGCATTGGAGACGTCAAGGA 59.315 50.000 19.50 1.00 0.00 3.36
181 182 1.197721 GTTGCATTGGAGACGTCAAGG 59.802 52.381 19.50 7.05 0.00 3.61
182 183 1.197721 GGTTGCATTGGAGACGTCAAG 59.802 52.381 19.50 1.60 0.00 3.02
183 184 1.234821 GGTTGCATTGGAGACGTCAA 58.765 50.000 19.50 4.28 0.00 3.18
184 185 0.605319 GGGTTGCATTGGAGACGTCA 60.605 55.000 19.50 0.00 0.00 4.35
185 186 0.605319 TGGGTTGCATTGGAGACGTC 60.605 55.000 7.70 7.70 0.00 4.34
186 187 0.606401 CTGGGTTGCATTGGAGACGT 60.606 55.000 0.00 0.00 0.00 4.34
187 188 0.321564 TCTGGGTTGCATTGGAGACG 60.322 55.000 0.00 0.00 0.00 4.18
188 189 1.168714 GTCTGGGTTGCATTGGAGAC 58.831 55.000 0.00 0.00 0.00 3.36
189 190 0.321564 CGTCTGGGTTGCATTGGAGA 60.322 55.000 0.00 0.00 0.00 3.71
190 191 0.606401 ACGTCTGGGTTGCATTGGAG 60.606 55.000 0.00 0.00 0.00 3.86
191 192 0.605319 GACGTCTGGGTTGCATTGGA 60.605 55.000 8.70 0.00 0.00 3.53
192 193 0.888736 TGACGTCTGGGTTGCATTGG 60.889 55.000 17.92 0.00 0.00 3.16
193 194 0.518636 CTGACGTCTGGGTTGCATTG 59.481 55.000 17.92 0.00 0.00 2.82
194 195 0.606401 CCTGACGTCTGGGTTGCATT 60.606 55.000 28.59 0.00 0.00 3.56
195 196 1.003355 CCTGACGTCTGGGTTGCAT 60.003 57.895 28.59 0.00 0.00 3.96
196 197 2.425592 CCTGACGTCTGGGTTGCA 59.574 61.111 28.59 1.42 0.00 4.08
197 198 2.358737 CCCTGACGTCTGGGTTGC 60.359 66.667 38.88 6.03 46.49 4.17
202 203 0.391661 CCAACATCCCTGACGTCTGG 60.392 60.000 29.12 29.12 35.06 3.86
203 204 1.021390 GCCAACATCCCTGACGTCTG 61.021 60.000 17.92 16.32 0.00 3.51
204 205 1.296715 GCCAACATCCCTGACGTCT 59.703 57.895 17.92 0.00 0.00 4.18
205 206 2.100631 CGCCAACATCCCTGACGTC 61.101 63.158 9.11 9.11 0.00 4.34
206 207 2.047274 CGCCAACATCCCTGACGT 60.047 61.111 0.00 0.00 0.00 4.34
207 208 2.047274 ACGCCAACATCCCTGACG 60.047 61.111 0.00 0.00 0.00 4.35
208 209 1.003839 TGACGCCAACATCCCTGAC 60.004 57.895 0.00 0.00 0.00 3.51
209 210 1.003839 GTGACGCCAACATCCCTGA 60.004 57.895 0.00 0.00 0.00 3.86
210 211 2.040544 GGTGACGCCAACATCCCTG 61.041 63.158 0.00 0.00 37.17 4.45
211 212 2.351276 GGTGACGCCAACATCCCT 59.649 61.111 0.00 0.00 37.17 4.20
212 213 2.033448 TGGTGACGCCAACATCCC 59.967 61.111 4.92 0.00 45.94 3.85
252 253 3.712187 GAATTGACCTCGGTTGCAAAAA 58.288 40.909 0.00 0.00 0.00 1.94
253 254 2.287308 CGAATTGACCTCGGTTGCAAAA 60.287 45.455 0.00 0.00 32.62 2.44
254 255 1.265635 CGAATTGACCTCGGTTGCAAA 59.734 47.619 0.00 0.00 32.62 3.68
255 256 0.871722 CGAATTGACCTCGGTTGCAA 59.128 50.000 0.00 0.00 32.62 4.08
256 257 2.539003 CGAATTGACCTCGGTTGCA 58.461 52.632 0.00 0.00 32.62 4.08
262 263 2.747446 ACAAATTCCCGAATTGACCTCG 59.253 45.455 3.51 0.00 40.57 4.63
263 264 4.783764 AACAAATTCCCGAATTGACCTC 57.216 40.909 3.51 0.00 40.57 3.85
264 265 4.157840 GCTAACAAATTCCCGAATTGACCT 59.842 41.667 3.51 0.00 40.57 3.85
265 266 4.082463 TGCTAACAAATTCCCGAATTGACC 60.082 41.667 3.51 0.00 40.57 4.02
266 267 4.857037 GTGCTAACAAATTCCCGAATTGAC 59.143 41.667 3.51 0.00 40.57 3.18
267 268 4.520874 TGTGCTAACAAATTCCCGAATTGA 59.479 37.500 3.51 0.00 40.57 2.57
268 269 4.804108 TGTGCTAACAAATTCCCGAATTG 58.196 39.130 3.51 1.93 40.57 2.32
269 270 5.461032 TTGTGCTAACAAATTCCCGAATT 57.539 34.783 0.00 0.00 43.32 2.17
280 281 5.606348 ATTTTGACCCTTTGTGCTAACAA 57.394 34.783 0.00 0.00 44.59 2.83
281 282 5.830991 ACTATTTTGACCCTTTGTGCTAACA 59.169 36.000 0.00 0.00 0.00 2.41
282 283 6.016610 TCACTATTTTGACCCTTTGTGCTAAC 60.017 38.462 0.00 0.00 0.00 2.34
283 284 6.065374 TCACTATTTTGACCCTTTGTGCTAA 58.935 36.000 0.00 0.00 0.00 3.09
284 285 5.626142 TCACTATTTTGACCCTTTGTGCTA 58.374 37.500 0.00 0.00 0.00 3.49
285 286 4.469657 TCACTATTTTGACCCTTTGTGCT 58.530 39.130 0.00 0.00 0.00 4.40
286 287 4.846779 TCACTATTTTGACCCTTTGTGC 57.153 40.909 0.00 0.00 0.00 4.57
298 299 5.774690 TCCAGCTGGACAAAATCACTATTTT 59.225 36.000 32.00 0.00 41.23 1.82
299 300 5.324409 TCCAGCTGGACAAAATCACTATTT 58.676 37.500 32.00 0.00 39.78 1.40
300 301 4.922206 TCCAGCTGGACAAAATCACTATT 58.078 39.130 32.00 0.00 39.78 1.73
301 302 4.521146 CTCCAGCTGGACAAAATCACTAT 58.479 43.478 32.00 0.00 39.78 2.12
302 303 3.869912 GCTCCAGCTGGACAAAATCACTA 60.870 47.826 32.00 6.78 39.78 2.74
303 304 2.787994 CTCCAGCTGGACAAAATCACT 58.212 47.619 32.00 0.00 39.78 3.41
304 305 1.200948 GCTCCAGCTGGACAAAATCAC 59.799 52.381 32.00 9.55 39.78 3.06
305 306 1.538047 GCTCCAGCTGGACAAAATCA 58.462 50.000 32.00 8.94 39.78 2.57
306 307 0.813821 GGCTCCAGCTGGACAAAATC 59.186 55.000 32.00 14.96 39.78 2.17
307 308 0.407139 AGGCTCCAGCTGGACAAAAT 59.593 50.000 32.00 12.87 39.78 1.82
308 309 0.538057 CAGGCTCCAGCTGGACAAAA 60.538 55.000 32.00 11.36 39.78 2.44
309 310 1.073722 CAGGCTCCAGCTGGACAAA 59.926 57.895 32.00 11.78 39.78 2.83
310 311 2.752358 CAGGCTCCAGCTGGACAA 59.248 61.111 32.00 12.19 39.78 3.18
311 312 4.025858 GCAGGCTCCAGCTGGACA 62.026 66.667 32.00 13.01 39.78 4.02
314 315 4.172512 ATCGCAGGCTCCAGCTGG 62.173 66.667 27.87 27.87 41.70 4.85
315 316 2.895865 CATCGCAGGCTCCAGCTG 60.896 66.667 6.78 6.78 41.70 4.24
352 353 5.810074 CCAAGAAACAACCAAACAAACTAGG 59.190 40.000 0.00 0.00 0.00 3.02
354 355 5.046950 AGCCAAGAAACAACCAAACAAACTA 60.047 36.000 0.00 0.00 0.00 2.24
365 366 0.102300 AACCGCAGCCAAGAAACAAC 59.898 50.000 0.00 0.00 0.00 3.32
387 388 3.605664 AAGGCAGCAACCGCAACC 61.606 61.111 0.00 0.00 42.27 3.77
388 389 2.355009 CAAGGCAGCAACCGCAAC 60.355 61.111 0.00 0.00 42.27 4.17
389 390 4.283403 GCAAGGCAGCAACCGCAA 62.283 61.111 0.00 0.00 42.27 4.85
391 392 4.712425 CAGCAAGGCAGCAACCGC 62.712 66.667 4.78 0.00 36.85 5.68
392 393 4.047059 CCAGCAAGGCAGCAACCG 62.047 66.667 4.78 0.00 36.85 4.44
530 531 3.378339 CGAATGACTTATACACCGGGAC 58.622 50.000 6.32 0.00 0.00 4.46
531 532 2.223876 GCGAATGACTTATACACCGGGA 60.224 50.000 6.32 0.00 0.00 5.14
532 533 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
533 534 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
534 535 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
535 536 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
536 537 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
537 538 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
538 539 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
539 540 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
540 541 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
541 542 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
542 543 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
543 544 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
544 545 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
545 546 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
546 547 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
547 548 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
548 549 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
549 550 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
550 551 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
551 552 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
609 610 9.706691 CCACACGGATGTAGTTTCTAAATATAT 57.293 33.333 0.00 0.00 36.72 0.86
610 611 8.916062 TCCACACGGATGTAGTTTCTAAATATA 58.084 33.333 0.00 0.00 36.72 0.86
611 612 7.788026 TCCACACGGATGTAGTTTCTAAATAT 58.212 34.615 0.00 0.00 36.72 1.28
612 613 7.172868 TCCACACGGATGTAGTTTCTAAATA 57.827 36.000 0.00 0.00 36.72 1.40
613 614 6.045072 TCCACACGGATGTAGTTTCTAAAT 57.955 37.500 0.00 0.00 36.72 1.40
614 615 5.471556 TCCACACGGATGTAGTTTCTAAA 57.528 39.130 0.00 0.00 36.72 1.85
615 616 5.471556 TTCCACACGGATGTAGTTTCTAA 57.528 39.130 0.00 0.00 42.41 2.10
616 617 5.471556 TTTCCACACGGATGTAGTTTCTA 57.528 39.130 0.00 0.00 42.41 2.10
617 618 4.345859 TTTCCACACGGATGTAGTTTCT 57.654 40.909 0.00 0.00 42.41 2.52
618 619 4.935808 AGATTTCCACACGGATGTAGTTTC 59.064 41.667 0.00 0.00 42.41 2.78
619 620 4.906618 AGATTTCCACACGGATGTAGTTT 58.093 39.130 0.00 0.00 42.41 2.66
620 621 4.553330 AGATTTCCACACGGATGTAGTT 57.447 40.909 0.00 0.00 42.41 2.24
621 622 4.710375 ACTAGATTTCCACACGGATGTAGT 59.290 41.667 0.00 0.00 42.41 2.73
622 623 5.043903 CACTAGATTTCCACACGGATGTAG 58.956 45.833 0.00 0.00 42.41 2.74
623 624 4.142026 CCACTAGATTTCCACACGGATGTA 60.142 45.833 0.00 0.00 42.41 2.29
624 625 3.369471 CCACTAGATTTCCACACGGATGT 60.369 47.826 0.00 0.00 42.41 3.06
625 626 3.198068 CCACTAGATTTCCACACGGATG 58.802 50.000 0.00 0.00 42.41 3.51
626 627 2.838202 ACCACTAGATTTCCACACGGAT 59.162 45.455 0.00 0.00 42.41 4.18
627 628 2.253610 ACCACTAGATTTCCACACGGA 58.746 47.619 0.00 0.00 40.60 4.69
628 629 2.762535 ACCACTAGATTTCCACACGG 57.237 50.000 0.00 0.00 0.00 4.94
629 630 6.145338 AGTATACCACTAGATTTCCACACG 57.855 41.667 0.00 0.00 34.98 4.49
630 631 8.788325 AAAAGTATACCACTAGATTTCCACAC 57.212 34.615 0.00 0.00 36.04 3.82
631 632 8.598916 TGAAAAGTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 36.04 4.17
632 633 9.614792 ATGAAAAGTATACCACTAGATTTCCAC 57.385 33.333 0.00 0.00 36.04 4.02
633 634 9.613428 CATGAAAAGTATACCACTAGATTTCCA 57.387 33.333 0.00 0.00 36.04 3.53
634 635 9.832445 TCATGAAAAGTATACCACTAGATTTCC 57.168 33.333 0.00 0.00 36.04 3.13
667 668 9.787532 CAACGATTTGAGGAATTAAATATGTGT 57.212 29.630 0.00 0.00 34.24 3.72
670 671 9.450807 GGTCAACGATTTGAGGAATTAAATATG 57.549 33.333 0.00 0.00 42.60 1.78
671 672 9.408648 AGGTCAACGATTTGAGGAATTAAATAT 57.591 29.630 0.00 0.00 42.60 1.28
672 673 8.801882 AGGTCAACGATTTGAGGAATTAAATA 57.198 30.769 0.00 0.00 42.60 1.40
673 674 7.703058 AGGTCAACGATTTGAGGAATTAAAT 57.297 32.000 0.00 0.00 42.60 1.40
674 675 8.098286 TCTAGGTCAACGATTTGAGGAATTAAA 58.902 33.333 0.00 0.00 42.60 1.52
675 676 7.617225 TCTAGGTCAACGATTTGAGGAATTAA 58.383 34.615 0.00 0.00 42.60 1.40
676 677 7.177832 TCTAGGTCAACGATTTGAGGAATTA 57.822 36.000 0.00 0.00 42.60 1.40
677 678 6.049955 TCTAGGTCAACGATTTGAGGAATT 57.950 37.500 0.00 0.00 42.60 2.17
678 679 5.677319 TCTAGGTCAACGATTTGAGGAAT 57.323 39.130 0.00 0.00 42.60 3.01
679 680 5.011738 AGTTCTAGGTCAACGATTTGAGGAA 59.988 40.000 0.00 0.00 42.60 3.36
680 681 4.527038 AGTTCTAGGTCAACGATTTGAGGA 59.473 41.667 0.00 0.00 42.60 3.71
681 682 4.822026 AGTTCTAGGTCAACGATTTGAGG 58.178 43.478 0.00 0.00 42.60 3.86
682 683 5.512082 CGTAGTTCTAGGTCAACGATTTGAG 59.488 44.000 0.00 0.00 42.60 3.02
683 684 5.396484 CGTAGTTCTAGGTCAACGATTTGA 58.604 41.667 0.00 0.00 39.55 2.69
684 685 4.031426 GCGTAGTTCTAGGTCAACGATTTG 59.969 45.833 11.15 0.00 32.35 2.32
685 686 4.171754 GCGTAGTTCTAGGTCAACGATTT 58.828 43.478 11.15 0.00 32.35 2.17
686 687 3.730061 CGCGTAGTTCTAGGTCAACGATT 60.730 47.826 0.00 0.00 32.35 3.34
687 688 2.223203 CGCGTAGTTCTAGGTCAACGAT 60.223 50.000 0.00 0.00 32.35 3.73
688 689 1.129251 CGCGTAGTTCTAGGTCAACGA 59.871 52.381 0.00 0.00 32.35 3.85
689 690 1.129251 TCGCGTAGTTCTAGGTCAACG 59.871 52.381 5.77 0.00 0.00 4.10
690 691 2.907910 TCGCGTAGTTCTAGGTCAAC 57.092 50.000 5.77 0.00 0.00 3.18
691 692 3.441222 TCATTCGCGTAGTTCTAGGTCAA 59.559 43.478 5.77 0.00 0.00 3.18
692 693 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
693 694 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
694 695 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
695 696 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
696 697 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
697 698 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
698 699 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
699 700 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
700 701 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
701 702 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
702 703 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
703 704 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
704 705 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
705 706 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
706 707 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
707 708 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
708 709 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
709 710 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
710 711 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
711 712 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
712 713 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
713 714 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
714 715 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
715 716 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
716 717 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
717 718 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
718 719 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
720 721 2.923634 ATACTCCCTCCGTCCGGGTG 62.924 65.000 0.00 0.00 42.56 4.61
721 722 2.234246 AATACTCCCTCCGTCCGGGT 62.234 60.000 0.00 0.00 42.56 5.28
722 723 1.457079 AATACTCCCTCCGTCCGGG 60.457 63.158 0.00 0.00 43.38 5.73
723 724 0.467659 AGAATACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
724 725 1.400737 AAGAATACTCCCTCCGTCCG 58.599 55.000 0.00 0.00 0.00 4.79
725 726 3.737355 CGAAAAGAATACTCCCTCCGTCC 60.737 52.174 0.00 0.00 0.00 4.79
726 727 3.445857 CGAAAAGAATACTCCCTCCGTC 58.554 50.000 0.00 0.00 0.00 4.79
727 728 2.167900 CCGAAAAGAATACTCCCTCCGT 59.832 50.000 0.00 0.00 0.00 4.69
728 729 2.429610 TCCGAAAAGAATACTCCCTCCG 59.570 50.000 0.00 0.00 0.00 4.63
729 730 3.451540 AGTCCGAAAAGAATACTCCCTCC 59.548 47.826 0.00 0.00 0.00 4.30
730 731 4.159879 TCAGTCCGAAAAGAATACTCCCTC 59.840 45.833 0.00 0.00 0.00 4.30
731 732 4.094476 TCAGTCCGAAAAGAATACTCCCT 58.906 43.478 0.00 0.00 0.00 4.20
732 733 4.467198 TCAGTCCGAAAAGAATACTCCC 57.533 45.455 0.00 0.00 0.00 4.30
733 734 6.986904 AATTCAGTCCGAAAAGAATACTCC 57.013 37.500 0.00 0.00 37.12 3.85
734 735 9.922305 CAATAATTCAGTCCGAAAAGAATACTC 57.078 33.333 0.00 0.00 37.12 2.59
735 736 8.398665 GCAATAATTCAGTCCGAAAAGAATACT 58.601 33.333 0.00 0.00 37.12 2.12
736 737 7.644157 GGCAATAATTCAGTCCGAAAAGAATAC 59.356 37.037 0.00 0.00 37.12 1.89
802 804 3.776347 TAGGAGCGCGAGAGAGGGG 62.776 68.421 12.10 0.00 0.00 4.79
806 808 2.864378 TTCGGTAGGAGCGCGAGAGA 62.864 60.000 12.10 0.00 39.21 3.10
807 809 2.381665 CTTCGGTAGGAGCGCGAGAG 62.382 65.000 12.10 0.00 39.21 3.20
880 882 4.091939 TCTCCCGGCGAGACGAGA 62.092 66.667 9.30 10.07 42.97 4.04
918 920 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
926 928 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
927 929 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
928 930 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
929 931 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
930 932 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
931 933 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
932 934 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
933 935 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
934 936 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
935 937 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
936 938 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
937 939 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
938 940 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
939 941 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
940 942 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
941 943 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
942 944 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
943 945 4.742138 GCTTCCTCTCTCTCTCTCTCTCTC 60.742 54.167 0.00 0.00 0.00 3.20
944 946 3.135530 GCTTCCTCTCTCTCTCTCTCTCT 59.864 52.174 0.00 0.00 0.00 3.10
945 947 3.118261 TGCTTCCTCTCTCTCTCTCTCTC 60.118 52.174 0.00 0.00 0.00 3.20
946 948 2.846206 TGCTTCCTCTCTCTCTCTCTCT 59.154 50.000 0.00 0.00 0.00 3.10
947 949 3.209410 CTGCTTCCTCTCTCTCTCTCTC 58.791 54.545 0.00 0.00 0.00 3.20
948 950 2.684927 GCTGCTTCCTCTCTCTCTCTCT 60.685 54.545 0.00 0.00 0.00 3.10
949 951 1.678101 GCTGCTTCCTCTCTCTCTCTC 59.322 57.143 0.00 0.00 0.00 3.20
950 952 1.285962 AGCTGCTTCCTCTCTCTCTCT 59.714 52.381 0.00 0.00 0.00 3.10
951 953 1.678101 GAGCTGCTTCCTCTCTCTCTC 59.322 57.143 2.53 0.00 0.00 3.20
952 954 1.005805 TGAGCTGCTTCCTCTCTCTCT 59.994 52.381 2.53 0.00 0.00 3.10
953 955 1.473258 TGAGCTGCTTCCTCTCTCTC 58.527 55.000 2.53 0.00 0.00 3.20
954 956 2.034124 GATGAGCTGCTTCCTCTCTCT 58.966 52.381 2.53 0.00 0.00 3.10
955 957 1.069049 GGATGAGCTGCTTCCTCTCTC 59.931 57.143 12.17 0.00 37.73 3.20
956 958 1.122227 GGATGAGCTGCTTCCTCTCT 58.878 55.000 12.17 0.00 37.73 3.10
957 959 0.106521 GGGATGAGCTGCTTCCTCTC 59.893 60.000 17.46 5.90 39.98 3.20
958 960 0.619832 TGGGATGAGCTGCTTCCTCT 60.620 55.000 17.46 0.00 39.98 3.69
959 961 0.179051 CTGGGATGAGCTGCTTCCTC 60.179 60.000 17.46 9.94 39.98 3.71
960 962 1.913722 CTGGGATGAGCTGCTTCCT 59.086 57.895 17.46 0.39 39.98 3.36
971 973 1.153289 CAGTTCTCCGGCTGGGATG 60.153 63.158 12.87 2.65 46.04 3.51
988 990 2.190313 GCTCATGGCGGATGGACA 59.810 61.111 0.00 0.00 38.71 4.02
1064 1066 3.606595 TCATTTCACAGAGAGCAGAGG 57.393 47.619 0.00 0.00 0.00 3.69
1088 1090 3.374058 GGTGGATTGATACGTTGACCAAG 59.626 47.826 0.00 0.00 0.00 3.61
1136 1138 3.889196 TTGTTCGTGGTTGTGCTAATC 57.111 42.857 0.00 0.00 0.00 1.75
1165 1185 3.771160 GGAAGCGAGGGAGGCGAA 61.771 66.667 0.00 0.00 35.00 4.70
1167 1187 3.798954 GATGGAAGCGAGGGAGGCG 62.799 68.421 0.00 0.00 35.00 5.52
1178 1198 0.942962 GCAGCCAAGATCGATGGAAG 59.057 55.000 20.77 13.66 40.56 3.46
1267 1291 4.719369 GGCTCGTCGGTGTTCGCT 62.719 66.667 0.00 0.00 39.05 4.93
1406 1453 3.123804 GAGCAACAGAAGACGAACAGAA 58.876 45.455 0.00 0.00 0.00 3.02
1457 1506 1.157870 CCGTGTTCTGCTCGTGGTTT 61.158 55.000 0.00 0.00 32.79 3.27
1638 1688 0.737715 GCTTGTCGGTCTAGCTGGTG 60.738 60.000 0.00 0.00 40.65 4.17
1707 1757 1.866015 ATTGAGACTCATGGACCCGA 58.134 50.000 5.87 0.00 0.00 5.14
1708 1758 2.169352 AGAATTGAGACTCATGGACCCG 59.831 50.000 5.87 0.00 0.00 5.28
1709 1759 3.054802 ACAGAATTGAGACTCATGGACCC 60.055 47.826 5.87 0.00 0.00 4.46
1710 1760 4.213564 ACAGAATTGAGACTCATGGACC 57.786 45.455 5.87 0.00 0.00 4.46
1711 1761 6.259608 CCAATACAGAATTGAGACTCATGGAC 59.740 42.308 5.87 0.00 46.81 4.02
1712 1762 6.156775 TCCAATACAGAATTGAGACTCATGGA 59.843 38.462 12.50 12.50 46.81 3.41
1713 1763 6.351711 TCCAATACAGAATTGAGACTCATGG 58.648 40.000 5.87 7.72 46.81 3.66
1714 1764 7.551974 AGTTCCAATACAGAATTGAGACTCATG 59.448 37.037 5.87 4.10 46.81 3.07
1715 1765 7.551974 CAGTTCCAATACAGAATTGAGACTCAT 59.448 37.037 5.87 0.00 46.81 2.90
1716 1766 6.875726 CAGTTCCAATACAGAATTGAGACTCA 59.124 38.462 0.00 0.00 46.81 3.41
1717 1767 6.876257 ACAGTTCCAATACAGAATTGAGACTC 59.124 38.462 0.00 0.00 46.81 3.36
1718 1768 6.652481 CACAGTTCCAATACAGAATTGAGACT 59.348 38.462 3.44 1.11 46.81 3.24
1719 1769 6.621596 GCACAGTTCCAATACAGAATTGAGAC 60.622 42.308 3.44 0.00 46.81 3.36
1785 1848 5.732810 GCAGGAATCAAATGCTAGAGAAAGC 60.733 44.000 0.00 0.00 43.08 3.51
1834 1897 3.476181 GCAATTTGGTCGAGTTTACGTC 58.524 45.455 0.00 0.00 34.70 4.34
1848 1911 0.108709 CATGGACGGGTGGCAATTTG 60.109 55.000 0.00 0.00 0.00 2.32
1858 1921 3.932545 TTTTCATTTCACATGGACGGG 57.067 42.857 0.00 0.00 0.00 5.28
1906 1969 4.556233 GCAGTTCACATCAGTACACAGTA 58.444 43.478 0.00 0.00 0.00 2.74
1907 1970 3.393800 GCAGTTCACATCAGTACACAGT 58.606 45.455 0.00 0.00 0.00 3.55
1923 1986 6.755141 AGTTCGATATATGTTTACACGCAGTT 59.245 34.615 0.00 0.00 41.61 3.16
2015 2103 3.314913 CGCTGAAGATGCTCTAAGAGAGA 59.685 47.826 8.67 0.00 45.07 3.10
2016 2104 3.550639 CCGCTGAAGATGCTCTAAGAGAG 60.551 52.174 4.34 4.34 45.04 3.20
2017 2105 2.360483 CCGCTGAAGATGCTCTAAGAGA 59.640 50.000 0.00 0.00 0.00 3.10
2058 2148 1.106944 AACACCCAAAGGCCTTCACG 61.107 55.000 20.79 11.18 36.11 4.35
2117 2210 2.597510 AAACCTGGAAGCACGGCC 60.598 61.111 0.00 0.00 0.00 6.13
2122 2216 2.282180 GGCCGAAACCTGGAAGCA 60.282 61.111 0.00 0.00 0.00 3.91
2125 2219 3.974293 GGGGGCCGAAACCTGGAA 61.974 66.667 0.00 0.00 0.00 3.53
2186 2281 4.630894 TGATGATCGGTAAATTTGTGCC 57.369 40.909 0.00 0.00 0.00 5.01
2188 2283 4.977963 GGCATGATGATCGGTAAATTTGTG 59.022 41.667 0.00 0.00 0.00 3.33
2189 2284 4.644234 TGGCATGATGATCGGTAAATTTGT 59.356 37.500 0.00 0.00 0.00 2.83
2190 2285 4.977963 GTGGCATGATGATCGGTAAATTTG 59.022 41.667 0.00 0.00 0.00 2.32
2191 2286 4.644234 TGTGGCATGATGATCGGTAAATTT 59.356 37.500 0.00 0.00 0.00 1.82
2192 2287 4.206375 TGTGGCATGATGATCGGTAAATT 58.794 39.130 0.00 0.00 0.00 1.82
2193 2288 3.819368 TGTGGCATGATGATCGGTAAAT 58.181 40.909 0.00 0.00 0.00 1.40
2194 2289 3.274095 TGTGGCATGATGATCGGTAAA 57.726 42.857 0.00 0.00 0.00 2.01
2195 2290 2.998316 TGTGGCATGATGATCGGTAA 57.002 45.000 0.00 0.00 0.00 2.85
2196 2291 2.170397 ACTTGTGGCATGATGATCGGTA 59.830 45.455 0.00 0.00 0.00 4.02
2197 2292 1.065199 ACTTGTGGCATGATGATCGGT 60.065 47.619 0.00 0.00 0.00 4.69
2198 2293 1.671979 ACTTGTGGCATGATGATCGG 58.328 50.000 0.00 0.00 0.00 4.18
2199 2294 3.127376 TCAAACTTGTGGCATGATGATCG 59.873 43.478 0.00 0.00 0.00 3.69
2200 2295 4.418392 GTCAAACTTGTGGCATGATGATC 58.582 43.478 0.00 0.00 0.00 2.92
2201 2296 3.119743 CGTCAAACTTGTGGCATGATGAT 60.120 43.478 0.00 0.00 30.41 2.45
2202 2297 2.226200 CGTCAAACTTGTGGCATGATGA 59.774 45.455 0.00 0.00 30.41 2.92
2203 2298 2.226200 TCGTCAAACTTGTGGCATGATG 59.774 45.455 0.00 0.00 0.00 3.07
2204 2299 2.503331 TCGTCAAACTTGTGGCATGAT 58.497 42.857 0.00 0.00 0.00 2.45
2205 2300 1.960417 TCGTCAAACTTGTGGCATGA 58.040 45.000 0.00 0.00 0.00 3.07
2206 2301 2.226200 TGATCGTCAAACTTGTGGCATG 59.774 45.455 0.00 0.00 0.00 4.06
2207 2302 2.503331 TGATCGTCAAACTTGTGGCAT 58.497 42.857 0.00 0.00 0.00 4.40
2208 2303 1.960417 TGATCGTCAAACTTGTGGCA 58.040 45.000 0.00 0.00 0.00 4.92
2209 2304 2.483877 TGATGATCGTCAAACTTGTGGC 59.516 45.455 15.35 0.00 0.00 5.01
2210 2305 4.655027 CATGATGATCGTCAAACTTGTGG 58.345 43.478 21.10 1.35 0.00 4.17
2249 2366 1.274167 TCGTGGACTTCGGCTATGTTT 59.726 47.619 0.00 0.00 0.00 2.83
2259 2400 2.779506 ACCCTTTTGATCGTGGACTTC 58.220 47.619 0.00 0.00 0.00 3.01
2397 2553 3.289834 CATGCCCATGCCTACGCC 61.290 66.667 0.00 0.00 36.33 5.68
2398 2554 3.289834 CCATGCCCATGCCTACGC 61.290 66.667 2.75 0.00 37.49 4.42
2399 2555 2.595463 CCCATGCCCATGCCTACG 60.595 66.667 2.75 0.00 37.49 3.51
2400 2556 2.914097 GCCCATGCCCATGCCTAC 60.914 66.667 2.75 0.00 37.49 3.18
2401 2557 1.433682 TATGCCCATGCCCATGCCTA 61.434 55.000 2.75 0.00 37.49 3.93
2402 2558 2.725127 CTATGCCCATGCCCATGCCT 62.725 60.000 2.75 0.00 37.49 4.75
2510 2687 1.225426 GATGGGAGCAGGCATGTCA 59.775 57.895 0.00 0.00 0.00 3.58
2552 2729 1.209128 CTAACATCGCCGCGAAGAAT 58.791 50.000 23.52 13.94 39.99 2.40
2566 2743 3.082548 CTCGACCTTCTCAGGACTAACA 58.917 50.000 0.00 0.00 44.19 2.41
2570 2749 0.039035 AGCTCGACCTTCTCAGGACT 59.961 55.000 0.00 0.00 44.19 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.