Multiple sequence alignment - TraesCS4B01G089800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G089800 chr4B 100.000 2612 0 0 1 2612 91185876 91183265 0.000000e+00 4824.0
1 TraesCS4B01G089800 chr4B 92.308 65 4 1 2323 2386 91183487 91183423 9.950000e-15 91.6
2 TraesCS4B01G089800 chr4B 92.308 65 4 1 2390 2454 91183554 91183491 9.950000e-15 91.6
3 TraesCS4B01G089800 chr4B 91.045 67 4 2 1896 1961 524557716 524557781 3.580000e-14 89.8
4 TraesCS4B01G089800 chr4D 94.635 1342 46 8 638 1961 61604777 61606110 0.000000e+00 2056.0
5 TraesCS4B01G089800 chr4D 84.807 441 27 20 1973 2394 61606081 61606500 8.700000e-110 407.0
6 TraesCS4B01G089800 chr4D 95.935 123 4 1 2491 2612 61607049 61607171 5.700000e-47 198.0
7 TraesCS4B01G089800 chr4D 95.000 60 3 0 1902 1961 4359393 4359452 7.700000e-16 95.3
8 TraesCS4B01G089800 chr4D 90.769 65 2 2 2390 2454 61606432 61606492 1.670000e-12 84.2
9 TraesCS4B01G089800 chr4A 93.110 1074 45 12 638 1693 534811093 534812155 0.000000e+00 1546.0
10 TraesCS4B01G089800 chr4A 84.756 164 18 6 1961 2118 251216714 251216876 9.680000e-35 158.0
11 TraesCS4B01G089800 chr4A 81.622 185 21 8 1960 2143 444421832 444421660 9.750000e-30 141.0
12 TraesCS4B01G089800 chr7D 89.894 188 14 3 1961 2143 548196959 548197146 1.210000e-58 237.0
13 TraesCS4B01G089800 chr7D 82.258 124 16 5 2001 2118 140130044 140130167 4.600000e-18 102.0
14 TraesCS4B01G089800 chr7B 89.474 190 12 7 1961 2143 666224 666412 1.560000e-57 233.0
15 TraesCS4B01G089800 chr5D 89.362 188 15 4 1961 2143 220494633 220494446 5.620000e-57 231.0
16 TraesCS4B01G089800 chr5D 85.185 162 19 4 1962 2118 92912494 92912333 7.480000e-36 161.0
17 TraesCS4B01G089800 chr5D 91.304 69 5 1 1900 1967 220494654 220494586 2.770000e-15 93.5
18 TraesCS4B01G089800 chr5D 91.304 69 5 1 1900 1967 383967064 383966996 2.770000e-15 93.5
19 TraesCS4B01G089800 chr1D 89.362 188 15 4 1961 2143 191235450 191235263 5.620000e-57 231.0
20 TraesCS4B01G089800 chr1D 89.362 188 15 4 1961 2143 194433993 194433806 5.620000e-57 231.0
21 TraesCS4B01G089800 chr1D 88.830 188 16 5 1961 2143 16286090 16286277 2.620000e-55 226.0
22 TraesCS4B01G089800 chr1D 92.537 67 5 0 1901 1967 194434012 194433946 2.140000e-16 97.1
23 TraesCS4B01G089800 chr6D 88.830 188 16 4 1961 2143 199208896 199209083 2.620000e-55 226.0
24 TraesCS4B01G089800 chr6A 88.770 187 17 2 1961 2143 102996982 102997168 2.620000e-55 226.0
25 TraesCS4B01G089800 chr6A 84.211 76 10 2 479 552 575556909 575556834 3.610000e-09 73.1
26 TraesCS4B01G089800 chr3D 88.830 188 16 3 1961 2143 429641631 429641818 2.620000e-55 226.0
27 TraesCS4B01G089800 chr3D 84.878 205 24 6 1944 2143 306398989 306398787 1.590000e-47 200.0
28 TraesCS4B01G089800 chr3D 92.424 66 4 1 1897 1961 140091132 140091197 2.770000e-15 93.5
29 TraesCS4B01G089800 chr3D 90.278 72 6 1 1897 1967 222337974 222338045 2.770000e-15 93.5
30 TraesCS4B01G089800 chrUn 85.366 164 18 5 1961 2118 115274970 115274807 5.780000e-37 165.0
31 TraesCS4B01G089800 chr7A 82.822 163 18 8 1961 2118 206516728 206516571 1.260000e-28 137.0
32 TraesCS4B01G089800 chr2A 81.132 159 18 6 1961 2118 111631183 111631036 1.640000e-22 117.0
33 TraesCS4B01G089800 chr2D 93.939 66 3 1 1900 1964 317636980 317636915 5.950000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G089800 chr4B 91183265 91185876 2611 True 1669.066667 4824 94.8720 1 2612 3 chr4B.!!$R1 2611
1 TraesCS4B01G089800 chr4D 61604777 61607171 2394 False 686.300000 2056 91.5365 638 2612 4 chr4D.!!$F2 1974
2 TraesCS4B01G089800 chr4A 534811093 534812155 1062 False 1546.000000 1546 93.1100 638 1693 1 chr4A.!!$F2 1055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.034896 ATCCACGCCGAACAGAACTT 59.965 50.0 0.0 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 1877 0.251297 TCGAAACCAGTACGGGGAGA 60.251 55.0 16.82 6.91 40.22 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.654749 GATAAACAGTGGCTTTGGGC 57.345 50.000 0.00 0.00 40.90 5.36
20 21 2.171003 GATAAACAGTGGCTTTGGGCT 58.829 47.619 0.00 0.00 41.46 5.19
21 22 2.080654 TAAACAGTGGCTTTGGGCTT 57.919 45.000 0.00 0.00 41.46 4.35
22 23 0.752658 AAACAGTGGCTTTGGGCTTC 59.247 50.000 0.00 0.00 41.46 3.86
23 24 1.115326 AACAGTGGCTTTGGGCTTCC 61.115 55.000 0.00 0.00 41.46 3.46
24 25 2.282462 AGTGGCTTTGGGCTTCCG 60.282 61.111 0.00 0.00 41.46 4.30
25 26 4.056125 GTGGCTTTGGGCTTCCGC 62.056 66.667 0.00 0.00 41.46 5.54
26 27 4.284550 TGGCTTTGGGCTTCCGCT 62.285 61.111 0.00 0.00 41.46 5.52
27 28 3.752339 GGCTTTGGGCTTCCGCTG 61.752 66.667 0.00 0.00 41.46 5.18
28 29 2.985847 GCTTTGGGCTTCCGCTGT 60.986 61.111 0.00 0.00 38.06 4.40
29 30 2.564721 GCTTTGGGCTTCCGCTGTT 61.565 57.895 0.00 0.00 38.06 3.16
30 31 1.286880 CTTTGGGCTTCCGCTGTTG 59.713 57.895 0.00 0.00 36.09 3.33
31 32 2.753931 CTTTGGGCTTCCGCTGTTGC 62.754 60.000 0.00 0.00 36.09 4.17
32 33 4.577677 TGGGCTTCCGCTGTTGCA 62.578 61.111 0.00 0.00 39.64 4.08
33 34 3.064324 GGGCTTCCGCTGTTGCAT 61.064 61.111 0.00 0.00 39.64 3.96
34 35 2.180017 GGCTTCCGCTGTTGCATG 59.820 61.111 0.00 0.00 39.64 4.06
35 36 2.629656 GGCTTCCGCTGTTGCATGT 61.630 57.895 0.00 0.00 39.64 3.21
36 37 1.443194 GCTTCCGCTGTTGCATGTG 60.443 57.895 0.00 0.00 39.64 3.21
37 38 1.855213 GCTTCCGCTGTTGCATGTGA 61.855 55.000 0.00 0.00 39.64 3.58
38 39 0.592637 CTTCCGCTGTTGCATGTGAA 59.407 50.000 0.00 0.00 39.64 3.18
39 40 1.200716 CTTCCGCTGTTGCATGTGAAT 59.799 47.619 0.00 0.00 39.64 2.57
40 41 1.246649 TCCGCTGTTGCATGTGAATT 58.753 45.000 0.00 0.00 39.64 2.17
41 42 1.199789 TCCGCTGTTGCATGTGAATTC 59.800 47.619 0.00 0.00 39.64 2.17
42 43 1.068402 CCGCTGTTGCATGTGAATTCA 60.068 47.619 3.38 3.38 39.64 2.57
43 44 2.607526 CCGCTGTTGCATGTGAATTCAA 60.608 45.455 10.35 1.23 39.64 2.69
44 45 3.051327 CGCTGTTGCATGTGAATTCAAA 58.949 40.909 10.35 4.96 39.64 2.69
45 46 3.120616 CGCTGTTGCATGTGAATTCAAAG 59.879 43.478 10.35 4.26 39.64 2.77
46 47 3.430895 GCTGTTGCATGTGAATTCAAAGG 59.569 43.478 10.35 7.94 39.41 3.11
47 48 3.991773 CTGTTGCATGTGAATTCAAAGGG 59.008 43.478 10.35 2.71 0.00 3.95
48 49 3.387374 TGTTGCATGTGAATTCAAAGGGT 59.613 39.130 10.35 0.00 0.00 4.34
49 50 4.141756 TGTTGCATGTGAATTCAAAGGGTT 60.142 37.500 10.35 0.00 0.00 4.11
50 51 4.686191 TGCATGTGAATTCAAAGGGTTT 57.314 36.364 10.35 0.00 0.00 3.27
51 52 5.798125 TGCATGTGAATTCAAAGGGTTTA 57.202 34.783 10.35 0.00 0.00 2.01
52 53 5.537188 TGCATGTGAATTCAAAGGGTTTAC 58.463 37.500 10.35 0.00 0.00 2.01
53 54 5.069648 TGCATGTGAATTCAAAGGGTTTACA 59.930 36.000 10.35 0.73 0.00 2.41
54 55 6.165577 GCATGTGAATTCAAAGGGTTTACAT 58.834 36.000 10.35 3.25 33.88 2.29
55 56 7.039434 TGCATGTGAATTCAAAGGGTTTACATA 60.039 33.333 10.35 0.00 32.47 2.29
56 57 7.816995 GCATGTGAATTCAAAGGGTTTACATAA 59.183 33.333 10.35 0.00 32.47 1.90
57 58 9.874205 CATGTGAATTCAAAGGGTTTACATAAT 57.126 29.630 10.35 0.00 32.47 1.28
59 60 8.240682 TGTGAATTCAAAGGGTTTACATAATCG 58.759 33.333 10.35 0.00 0.00 3.34
60 61 7.700656 GTGAATTCAAAGGGTTTACATAATCGG 59.299 37.037 10.35 0.00 0.00 4.18
61 62 7.394923 TGAATTCAAAGGGTTTACATAATCGGT 59.605 33.333 5.45 0.00 0.00 4.69
62 63 7.712204 ATTCAAAGGGTTTACATAATCGGTT 57.288 32.000 0.00 0.00 0.00 4.44
63 64 6.503589 TCAAAGGGTTTACATAATCGGTTG 57.496 37.500 0.00 0.00 0.00 3.77
64 65 6.239396 TCAAAGGGTTTACATAATCGGTTGA 58.761 36.000 0.00 0.00 0.00 3.18
65 66 6.715718 TCAAAGGGTTTACATAATCGGTTGAA 59.284 34.615 0.00 0.00 0.00 2.69
66 67 7.230913 TCAAAGGGTTTACATAATCGGTTGAAA 59.769 33.333 0.00 0.00 0.00 2.69
67 68 6.505044 AGGGTTTACATAATCGGTTGAAAC 57.495 37.500 0.00 0.00 0.00 2.78
68 69 6.243148 AGGGTTTACATAATCGGTTGAAACT 58.757 36.000 0.00 0.00 0.00 2.66
69 70 7.396418 AGGGTTTACATAATCGGTTGAAACTA 58.604 34.615 0.00 0.00 0.00 2.24
70 71 7.884354 AGGGTTTACATAATCGGTTGAAACTAA 59.116 33.333 0.00 0.00 0.00 2.24
71 72 8.513774 GGGTTTACATAATCGGTTGAAACTAAA 58.486 33.333 0.00 0.00 0.00 1.85
72 73 9.896263 GGTTTACATAATCGGTTGAAACTAAAA 57.104 29.630 0.00 0.00 0.00 1.52
81 82 8.911247 ATCGGTTGAAACTAAAAATAATCTGC 57.089 30.769 0.00 0.00 0.00 4.26
82 83 8.106247 TCGGTTGAAACTAAAAATAATCTGCT 57.894 30.769 0.00 0.00 0.00 4.24
83 84 9.221933 TCGGTTGAAACTAAAAATAATCTGCTA 57.778 29.630 0.00 0.00 0.00 3.49
84 85 9.274065 CGGTTGAAACTAAAAATAATCTGCTAC 57.726 33.333 0.00 0.00 0.00 3.58
85 86 9.569167 GGTTGAAACTAAAAATAATCTGCTACC 57.431 33.333 0.00 0.00 0.00 3.18
86 87 9.569167 GTTGAAACTAAAAATAATCTGCTACCC 57.431 33.333 0.00 0.00 0.00 3.69
87 88 7.981142 TGAAACTAAAAATAATCTGCTACCCG 58.019 34.615 0.00 0.00 0.00 5.28
88 89 7.825270 TGAAACTAAAAATAATCTGCTACCCGA 59.175 33.333 0.00 0.00 0.00 5.14
89 90 8.747538 AAACTAAAAATAATCTGCTACCCGAT 57.252 30.769 0.00 0.00 0.00 4.18
90 91 7.730364 ACTAAAAATAATCTGCTACCCGATG 57.270 36.000 0.00 0.00 0.00 3.84
91 92 7.506114 ACTAAAAATAATCTGCTACCCGATGA 58.494 34.615 0.00 0.00 0.00 2.92
92 93 7.990886 ACTAAAAATAATCTGCTACCCGATGAA 59.009 33.333 0.00 0.00 0.00 2.57
93 94 7.823745 AAAAATAATCTGCTACCCGATGAAT 57.176 32.000 0.00 0.00 0.00 2.57
94 95 8.918202 AAAAATAATCTGCTACCCGATGAATA 57.082 30.769 0.00 0.00 0.00 1.75
95 96 8.553459 AAAATAATCTGCTACCCGATGAATAG 57.447 34.615 0.00 0.00 0.00 1.73
96 97 4.543590 AATCTGCTACCCGATGAATAGG 57.456 45.455 0.00 0.00 0.00 2.57
97 98 1.618837 TCTGCTACCCGATGAATAGGC 59.381 52.381 0.00 0.00 0.00 3.93
98 99 0.317160 TGCTACCCGATGAATAGGCG 59.683 55.000 0.00 0.00 0.00 5.52
99 100 0.317479 GCTACCCGATGAATAGGCGT 59.683 55.000 0.00 0.00 0.00 5.68
100 101 1.270147 GCTACCCGATGAATAGGCGTT 60.270 52.381 0.00 0.00 0.00 4.84
101 102 2.805657 GCTACCCGATGAATAGGCGTTT 60.806 50.000 0.00 0.00 0.00 3.60
102 103 1.949465 ACCCGATGAATAGGCGTTTC 58.051 50.000 0.00 0.00 0.00 2.78
103 104 1.226746 CCCGATGAATAGGCGTTTCC 58.773 55.000 0.00 0.00 0.00 3.13
104 105 1.474320 CCCGATGAATAGGCGTTTCCA 60.474 52.381 0.00 0.00 37.29 3.53
105 106 2.285083 CCGATGAATAGGCGTTTCCAA 58.715 47.619 0.00 0.00 37.29 3.53
106 107 2.680841 CCGATGAATAGGCGTTTCCAAA 59.319 45.455 0.00 0.00 37.29 3.28
107 108 3.127895 CCGATGAATAGGCGTTTCCAAAA 59.872 43.478 0.00 0.00 37.29 2.44
108 109 4.380023 CCGATGAATAGGCGTTTCCAAAAA 60.380 41.667 0.00 0.00 37.29 1.94
129 130 6.588719 AAAAATCATCATCCCAAACTTCGA 57.411 33.333 0.00 0.00 0.00 3.71
130 131 6.780457 AAAATCATCATCCCAAACTTCGAT 57.220 33.333 0.00 0.00 0.00 3.59
131 132 7.880160 AAAATCATCATCCCAAACTTCGATA 57.120 32.000 0.00 0.00 0.00 2.92
132 133 8.469309 AAAATCATCATCCCAAACTTCGATAT 57.531 30.769 0.00 0.00 0.00 1.63
133 134 9.573166 AAAATCATCATCCCAAACTTCGATATA 57.427 29.630 0.00 0.00 0.00 0.86
134 135 8.553459 AATCATCATCCCAAACTTCGATATAC 57.447 34.615 0.00 0.00 0.00 1.47
135 136 7.061566 TCATCATCCCAAACTTCGATATACA 57.938 36.000 0.00 0.00 0.00 2.29
136 137 7.505258 TCATCATCCCAAACTTCGATATACAA 58.495 34.615 0.00 0.00 0.00 2.41
137 138 7.441157 TCATCATCCCAAACTTCGATATACAAC 59.559 37.037 0.00 0.00 0.00 3.32
138 139 6.645306 TCATCCCAAACTTCGATATACAACA 58.355 36.000 0.00 0.00 0.00 3.33
139 140 6.761242 TCATCCCAAACTTCGATATACAACAG 59.239 38.462 0.00 0.00 0.00 3.16
140 141 6.288941 TCCCAAACTTCGATATACAACAGA 57.711 37.500 0.00 0.00 0.00 3.41
141 142 6.703319 TCCCAAACTTCGATATACAACAGAA 58.297 36.000 0.00 0.00 0.00 3.02
142 143 7.162761 TCCCAAACTTCGATATACAACAGAAA 58.837 34.615 0.00 0.00 0.00 2.52
143 144 7.662258 TCCCAAACTTCGATATACAACAGAAAA 59.338 33.333 0.00 0.00 0.00 2.29
144 145 8.458843 CCCAAACTTCGATATACAACAGAAAAT 58.541 33.333 0.00 0.00 0.00 1.82
145 146 9.490663 CCAAACTTCGATATACAACAGAAAATC 57.509 33.333 0.00 0.00 0.00 2.17
148 149 8.197988 ACTTCGATATACAACAGAAAATCACC 57.802 34.615 0.00 0.00 0.00 4.02
149 150 7.822334 ACTTCGATATACAACAGAAAATCACCA 59.178 33.333 0.00 0.00 0.00 4.17
150 151 8.731275 TTCGATATACAACAGAAAATCACCAT 57.269 30.769 0.00 0.00 0.00 3.55
151 152 8.365399 TCGATATACAACAGAAAATCACCATC 57.635 34.615 0.00 0.00 0.00 3.51
152 153 7.441157 TCGATATACAACAGAAAATCACCATCC 59.559 37.037 0.00 0.00 0.00 3.51
153 154 5.818136 ATACAACAGAAAATCACCATCCG 57.182 39.130 0.00 0.00 0.00 4.18
154 155 3.750371 ACAACAGAAAATCACCATCCGA 58.250 40.909 0.00 0.00 0.00 4.55
155 156 4.141287 ACAACAGAAAATCACCATCCGAA 58.859 39.130 0.00 0.00 0.00 4.30
156 157 4.582656 ACAACAGAAAATCACCATCCGAAA 59.417 37.500 0.00 0.00 0.00 3.46
157 158 4.766404 ACAGAAAATCACCATCCGAAAC 57.234 40.909 0.00 0.00 0.00 2.78
158 159 4.398319 ACAGAAAATCACCATCCGAAACT 58.602 39.130 0.00 0.00 0.00 2.66
159 160 4.827284 ACAGAAAATCACCATCCGAAACTT 59.173 37.500 0.00 0.00 0.00 2.66
160 161 5.301805 ACAGAAAATCACCATCCGAAACTTT 59.698 36.000 0.00 0.00 0.00 2.66
161 162 6.488683 ACAGAAAATCACCATCCGAAACTTTA 59.511 34.615 0.00 0.00 0.00 1.85
162 163 7.013846 ACAGAAAATCACCATCCGAAACTTTAA 59.986 33.333 0.00 0.00 0.00 1.52
163 164 8.028938 CAGAAAATCACCATCCGAAACTTTAAT 58.971 33.333 0.00 0.00 0.00 1.40
164 165 8.028938 AGAAAATCACCATCCGAAACTTTAATG 58.971 33.333 0.00 0.00 0.00 1.90
165 166 7.461182 AAATCACCATCCGAAACTTTAATGA 57.539 32.000 0.00 0.00 0.00 2.57
166 167 6.683974 ATCACCATCCGAAACTTTAATGAG 57.316 37.500 0.00 0.00 0.00 2.90
167 168 4.394920 TCACCATCCGAAACTTTAATGAGC 59.605 41.667 0.00 0.00 0.00 4.26
168 169 3.694566 ACCATCCGAAACTTTAATGAGCC 59.305 43.478 0.00 0.00 0.00 4.70
169 170 3.066760 CCATCCGAAACTTTAATGAGCCC 59.933 47.826 0.00 0.00 0.00 5.19
170 171 2.352388 TCCGAAACTTTAATGAGCCCG 58.648 47.619 0.00 0.00 0.00 6.13
171 172 2.081462 CCGAAACTTTAATGAGCCCGT 58.919 47.619 0.00 0.00 0.00 5.28
172 173 2.486592 CCGAAACTTTAATGAGCCCGTT 59.513 45.455 0.00 0.00 0.00 4.44
173 174 3.488489 CGAAACTTTAATGAGCCCGTTG 58.512 45.455 0.00 0.00 0.00 4.10
174 175 3.058501 CGAAACTTTAATGAGCCCGTTGT 60.059 43.478 0.00 0.00 0.00 3.32
175 176 4.555906 CGAAACTTTAATGAGCCCGTTGTT 60.556 41.667 0.00 0.00 0.00 2.83
176 177 3.915437 ACTTTAATGAGCCCGTTGTTG 57.085 42.857 0.00 0.00 0.00 3.33
177 178 3.482436 ACTTTAATGAGCCCGTTGTTGA 58.518 40.909 0.00 0.00 0.00 3.18
178 179 3.252458 ACTTTAATGAGCCCGTTGTTGAC 59.748 43.478 0.00 0.00 0.00 3.18
192 193 3.326733 TGTTGACGAAAAACATCCACG 57.673 42.857 0.00 0.00 32.71 4.94
193 194 2.041244 GTTGACGAAAAACATCCACGC 58.959 47.619 0.00 0.00 0.00 5.34
194 195 0.589223 TGACGAAAAACATCCACGCC 59.411 50.000 0.00 0.00 0.00 5.68
195 196 0.452122 GACGAAAAACATCCACGCCG 60.452 55.000 0.00 0.00 0.00 6.46
196 197 0.881159 ACGAAAAACATCCACGCCGA 60.881 50.000 0.00 0.00 0.00 5.54
197 198 0.236187 CGAAAAACATCCACGCCGAA 59.764 50.000 0.00 0.00 0.00 4.30
198 199 1.681825 GAAAAACATCCACGCCGAAC 58.318 50.000 0.00 0.00 0.00 3.95
199 200 1.002251 GAAAAACATCCACGCCGAACA 60.002 47.619 0.00 0.00 0.00 3.18
200 201 0.591170 AAAACATCCACGCCGAACAG 59.409 50.000 0.00 0.00 0.00 3.16
201 202 0.250124 AAACATCCACGCCGAACAGA 60.250 50.000 0.00 0.00 0.00 3.41
202 203 0.250124 AACATCCACGCCGAACAGAA 60.250 50.000 0.00 0.00 0.00 3.02
203 204 0.949105 ACATCCACGCCGAACAGAAC 60.949 55.000 0.00 0.00 0.00 3.01
204 205 0.670546 CATCCACGCCGAACAGAACT 60.671 55.000 0.00 0.00 0.00 3.01
205 206 0.034896 ATCCACGCCGAACAGAACTT 59.965 50.000 0.00 0.00 0.00 2.66
206 207 0.179067 TCCACGCCGAACAGAACTTT 60.179 50.000 0.00 0.00 0.00 2.66
207 208 0.661020 CCACGCCGAACAGAACTTTT 59.339 50.000 0.00 0.00 0.00 2.27
208 209 1.064952 CCACGCCGAACAGAACTTTTT 59.935 47.619 0.00 0.00 0.00 1.94
209 210 2.372350 CACGCCGAACAGAACTTTTTC 58.628 47.619 0.00 0.00 0.00 2.29
210 211 2.031683 CACGCCGAACAGAACTTTTTCT 59.968 45.455 0.00 0.00 43.35 2.52
211 212 2.681344 ACGCCGAACAGAACTTTTTCTT 59.319 40.909 0.00 0.00 40.34 2.52
212 213 3.242641 ACGCCGAACAGAACTTTTTCTTC 60.243 43.478 0.00 0.00 40.34 2.87
213 214 3.002348 CGCCGAACAGAACTTTTTCTTCT 59.998 43.478 0.00 0.00 40.34 2.85
214 215 4.528504 GCCGAACAGAACTTTTTCTTCTC 58.471 43.478 0.00 0.00 40.34 2.87
215 216 4.273724 GCCGAACAGAACTTTTTCTTCTCT 59.726 41.667 0.00 0.00 40.34 3.10
216 217 5.465724 GCCGAACAGAACTTTTTCTTCTCTA 59.534 40.000 0.00 0.00 40.34 2.43
217 218 6.564312 GCCGAACAGAACTTTTTCTTCTCTAC 60.564 42.308 0.00 0.00 40.34 2.59
218 219 6.702282 CCGAACAGAACTTTTTCTTCTCTACT 59.298 38.462 0.00 0.00 40.34 2.57
219 220 7.866393 CCGAACAGAACTTTTTCTTCTCTACTA 59.134 37.037 0.00 0.00 40.34 1.82
220 221 8.692615 CGAACAGAACTTTTTCTTCTCTACTAC 58.307 37.037 0.00 0.00 40.34 2.73
221 222 9.752961 GAACAGAACTTTTTCTTCTCTACTACT 57.247 33.333 0.00 0.00 40.34 2.57
251 252 7.529880 AAAAGCAGTGTTTCTTTTTCAGATG 57.470 32.000 0.00 0.00 38.84 2.90
252 253 5.841957 AGCAGTGTTTCTTTTTCAGATGT 57.158 34.783 0.00 0.00 0.00 3.06
253 254 5.825507 AGCAGTGTTTCTTTTTCAGATGTC 58.174 37.500 0.00 0.00 0.00 3.06
254 255 5.357878 AGCAGTGTTTCTTTTTCAGATGTCA 59.642 36.000 0.00 0.00 0.00 3.58
255 256 6.040166 AGCAGTGTTTCTTTTTCAGATGTCAT 59.960 34.615 0.00 0.00 0.00 3.06
256 257 7.229306 AGCAGTGTTTCTTTTTCAGATGTCATA 59.771 33.333 0.00 0.00 0.00 2.15
257 258 7.324616 GCAGTGTTTCTTTTTCAGATGTCATAC 59.675 37.037 0.00 0.00 0.00 2.39
258 259 7.805071 CAGTGTTTCTTTTTCAGATGTCATACC 59.195 37.037 0.00 0.00 0.00 2.73
259 260 7.502226 AGTGTTTCTTTTTCAGATGTCATACCA 59.498 33.333 0.00 0.00 0.00 3.25
260 261 7.591426 GTGTTTCTTTTTCAGATGTCATACCAC 59.409 37.037 0.00 0.00 0.00 4.16
261 262 7.502226 TGTTTCTTTTTCAGATGTCATACCACT 59.498 33.333 0.00 0.00 0.00 4.00
262 263 8.352942 GTTTCTTTTTCAGATGTCATACCACTT 58.647 33.333 0.00 0.00 0.00 3.16
263 264 8.463930 TTCTTTTTCAGATGTCATACCACTTT 57.536 30.769 0.00 0.00 0.00 2.66
264 265 7.874940 TCTTTTTCAGATGTCATACCACTTTG 58.125 34.615 0.00 0.00 0.00 2.77
265 266 7.502226 TCTTTTTCAGATGTCATACCACTTTGT 59.498 33.333 0.00 0.00 0.00 2.83
266 267 6.801539 TTTCAGATGTCATACCACTTTGTC 57.198 37.500 0.00 0.00 0.00 3.18
267 268 5.482163 TCAGATGTCATACCACTTTGTCA 57.518 39.130 0.00 0.00 0.00 3.58
268 269 5.863965 TCAGATGTCATACCACTTTGTCAA 58.136 37.500 0.00 0.00 0.00 3.18
269 270 5.700832 TCAGATGTCATACCACTTTGTCAAC 59.299 40.000 0.00 0.00 0.00 3.18
270 271 5.003804 AGATGTCATACCACTTTGTCAACC 58.996 41.667 0.00 0.00 0.00 3.77
271 272 4.157849 TGTCATACCACTTTGTCAACCA 57.842 40.909 0.00 0.00 0.00 3.67
272 273 4.527944 TGTCATACCACTTTGTCAACCAA 58.472 39.130 0.00 0.00 0.00 3.67
273 274 5.136828 TGTCATACCACTTTGTCAACCAAT 58.863 37.500 0.00 0.00 31.81 3.16
274 275 5.240623 TGTCATACCACTTTGTCAACCAATC 59.759 40.000 0.00 0.00 31.81 2.67
275 276 5.473504 GTCATACCACTTTGTCAACCAATCT 59.526 40.000 0.00 0.00 31.81 2.40
276 277 5.705441 TCATACCACTTTGTCAACCAATCTC 59.295 40.000 0.00 0.00 31.81 2.75
277 278 3.222603 ACCACTTTGTCAACCAATCTCC 58.777 45.455 0.00 0.00 31.81 3.71
278 279 2.558359 CCACTTTGTCAACCAATCTCCC 59.442 50.000 0.00 0.00 31.81 4.30
279 280 2.558359 CACTTTGTCAACCAATCTCCCC 59.442 50.000 0.00 0.00 31.81 4.81
280 281 2.171003 CTTTGTCAACCAATCTCCCCC 58.829 52.381 0.00 0.00 31.81 5.40
295 296 2.855669 CCCCCTCCTATCTTGTCCC 58.144 63.158 0.00 0.00 0.00 4.46
296 297 0.269173 CCCCCTCCTATCTTGTCCCT 59.731 60.000 0.00 0.00 0.00 4.20
297 298 1.723288 CCCCTCCTATCTTGTCCCTC 58.277 60.000 0.00 0.00 0.00 4.30
298 299 1.723288 CCCTCCTATCTTGTCCCTCC 58.277 60.000 0.00 0.00 0.00 4.30
299 300 1.062121 CCCTCCTATCTTGTCCCTCCA 60.062 57.143 0.00 0.00 0.00 3.86
300 301 2.428484 CCCTCCTATCTTGTCCCTCCAT 60.428 54.545 0.00 0.00 0.00 3.41
301 302 3.321950 CCTCCTATCTTGTCCCTCCATT 58.678 50.000 0.00 0.00 0.00 3.16
302 303 3.072184 CCTCCTATCTTGTCCCTCCATTG 59.928 52.174 0.00 0.00 0.00 2.82
303 304 3.969976 CTCCTATCTTGTCCCTCCATTGA 59.030 47.826 0.00 0.00 0.00 2.57
304 305 4.570926 TCCTATCTTGTCCCTCCATTGAT 58.429 43.478 0.00 0.00 0.00 2.57
305 306 4.977739 TCCTATCTTGTCCCTCCATTGATT 59.022 41.667 0.00 0.00 0.00 2.57
306 307 5.433051 TCCTATCTTGTCCCTCCATTGATTT 59.567 40.000 0.00 0.00 0.00 2.17
307 308 6.068853 TCCTATCTTGTCCCTCCATTGATTTT 60.069 38.462 0.00 0.00 0.00 1.82
308 309 6.608808 CCTATCTTGTCCCTCCATTGATTTTT 59.391 38.462 0.00 0.00 0.00 1.94
324 325 3.390003 TTTTTCGCTCAACCGGTCT 57.610 47.368 8.04 0.00 0.00 3.85
325 326 1.670791 TTTTTCGCTCAACCGGTCTT 58.329 45.000 8.04 0.00 0.00 3.01
326 327 1.670791 TTTTCGCTCAACCGGTCTTT 58.329 45.000 8.04 0.00 0.00 2.52
327 328 1.670791 TTTCGCTCAACCGGTCTTTT 58.329 45.000 8.04 0.00 0.00 2.27
328 329 0.941542 TTCGCTCAACCGGTCTTTTG 59.058 50.000 8.04 1.60 0.00 2.44
329 330 0.179067 TCGCTCAACCGGTCTTTTGT 60.179 50.000 8.04 0.00 0.00 2.83
330 331 0.234884 CGCTCAACCGGTCTTTTGTC 59.765 55.000 8.04 0.00 0.00 3.18
331 332 0.591659 GCTCAACCGGTCTTTTGTCC 59.408 55.000 8.04 0.00 0.00 4.02
332 333 1.235724 CTCAACCGGTCTTTTGTCCC 58.764 55.000 8.04 0.00 0.00 4.46
333 334 0.547075 TCAACCGGTCTTTTGTCCCA 59.453 50.000 8.04 0.00 0.00 4.37
334 335 0.666374 CAACCGGTCTTTTGTCCCAC 59.334 55.000 8.04 0.00 0.00 4.61
335 336 0.256464 AACCGGTCTTTTGTCCCACA 59.744 50.000 8.04 0.00 0.00 4.17
336 337 0.464916 ACCGGTCTTTTGTCCCACAC 60.465 55.000 0.00 0.00 0.00 3.82
337 338 0.464735 CCGGTCTTTTGTCCCACACA 60.465 55.000 0.00 0.00 0.00 3.72
338 339 0.661020 CGGTCTTTTGTCCCACACAC 59.339 55.000 0.00 0.00 33.41 3.82
339 340 1.029681 GGTCTTTTGTCCCACACACC 58.970 55.000 0.00 0.00 33.41 4.16
340 341 1.029681 GTCTTTTGTCCCACACACCC 58.970 55.000 0.00 0.00 33.41 4.61
341 342 0.923358 TCTTTTGTCCCACACACCCT 59.077 50.000 0.00 0.00 33.41 4.34
342 343 1.286553 TCTTTTGTCCCACACACCCTT 59.713 47.619 0.00 0.00 33.41 3.95
343 344 2.107366 CTTTTGTCCCACACACCCTTT 58.893 47.619 0.00 0.00 33.41 3.11
344 345 1.479709 TTTGTCCCACACACCCTTTG 58.520 50.000 0.00 0.00 33.41 2.77
345 346 0.333312 TTGTCCCACACACCCTTTGT 59.667 50.000 0.00 0.00 39.97 2.83
346 347 0.106918 TGTCCCACACACCCTTTGTC 60.107 55.000 0.00 0.00 35.67 3.18
347 348 0.182775 GTCCCACACACCCTTTGTCT 59.817 55.000 0.00 0.00 35.67 3.41
348 349 0.182537 TCCCACACACCCTTTGTCTG 59.817 55.000 0.00 0.00 35.67 3.51
349 350 1.455383 CCCACACACCCTTTGTCTGC 61.455 60.000 0.00 0.00 35.67 4.26
350 351 0.751277 CCACACACCCTTTGTCTGCA 60.751 55.000 0.00 0.00 35.67 4.41
351 352 0.381801 CACACACCCTTTGTCTGCAC 59.618 55.000 0.00 0.00 35.67 4.57
352 353 0.751643 ACACACCCTTTGTCTGCACC 60.752 55.000 0.00 0.00 35.67 5.01
353 354 0.466189 CACACCCTTTGTCTGCACCT 60.466 55.000 0.00 0.00 35.67 4.00
354 355 0.258774 ACACCCTTTGTCTGCACCTT 59.741 50.000 0.00 0.00 29.79 3.50
355 356 1.493022 ACACCCTTTGTCTGCACCTTA 59.507 47.619 0.00 0.00 29.79 2.69
356 357 2.108250 ACACCCTTTGTCTGCACCTTAT 59.892 45.455 0.00 0.00 29.79 1.73
357 358 2.749621 CACCCTTTGTCTGCACCTTATC 59.250 50.000 0.00 0.00 0.00 1.75
358 359 2.290960 ACCCTTTGTCTGCACCTTATCC 60.291 50.000 0.00 0.00 0.00 2.59
359 360 2.290896 CCCTTTGTCTGCACCTTATCCA 60.291 50.000 0.00 0.00 0.00 3.41
360 361 3.624777 CCTTTGTCTGCACCTTATCCAT 58.375 45.455 0.00 0.00 0.00 3.41
361 362 4.385199 CCCTTTGTCTGCACCTTATCCATA 60.385 45.833 0.00 0.00 0.00 2.74
362 363 5.380043 CCTTTGTCTGCACCTTATCCATAT 58.620 41.667 0.00 0.00 0.00 1.78
363 364 5.240183 CCTTTGTCTGCACCTTATCCATATG 59.760 44.000 0.00 0.00 0.00 1.78
364 365 3.743521 TGTCTGCACCTTATCCATATGC 58.256 45.455 0.00 0.00 36.81 3.14
365 366 3.392285 TGTCTGCACCTTATCCATATGCT 59.608 43.478 0.00 0.00 37.20 3.79
366 367 4.141413 TGTCTGCACCTTATCCATATGCTT 60.141 41.667 0.00 0.00 37.20 3.91
367 368 5.071653 TGTCTGCACCTTATCCATATGCTTA 59.928 40.000 0.00 0.00 37.20 3.09
368 369 6.176183 GTCTGCACCTTATCCATATGCTTAT 58.824 40.000 0.00 0.00 37.20 1.73
369 370 6.314896 GTCTGCACCTTATCCATATGCTTATC 59.685 42.308 0.00 0.00 37.20 1.75
370 371 6.013466 TCTGCACCTTATCCATATGCTTATCA 60.013 38.462 0.00 0.00 37.20 2.15
371 372 6.541907 TGCACCTTATCCATATGCTTATCAA 58.458 36.000 0.00 0.00 37.20 2.57
372 373 7.177184 TGCACCTTATCCATATGCTTATCAAT 58.823 34.615 0.00 0.00 37.20 2.57
373 374 7.337689 TGCACCTTATCCATATGCTTATCAATC 59.662 37.037 0.00 0.00 37.20 2.67
374 375 7.337689 GCACCTTATCCATATGCTTATCAATCA 59.662 37.037 0.00 0.00 33.44 2.57
375 376 9.234827 CACCTTATCCATATGCTTATCAATCAA 57.765 33.333 0.00 0.00 0.00 2.57
376 377 9.986157 ACCTTATCCATATGCTTATCAATCAAT 57.014 29.630 0.00 0.00 0.00 2.57
404 405 9.800433 TGAATTATTTATCAAATTGCATCACGT 57.200 25.926 0.00 0.00 32.38 4.49
412 413 9.676195 TTATCAAATTGCATCACGTTAATATGG 57.324 29.630 0.00 0.00 0.00 2.74
413 414 7.326968 TCAAATTGCATCACGTTAATATGGA 57.673 32.000 0.00 0.00 0.00 3.41
414 415 7.192913 TCAAATTGCATCACGTTAATATGGAC 58.807 34.615 0.00 0.00 0.00 4.02
415 416 5.689383 ATTGCATCACGTTAATATGGACC 57.311 39.130 0.00 0.00 0.00 4.46
416 417 4.143986 TGCATCACGTTAATATGGACCA 57.856 40.909 0.00 0.00 0.00 4.02
417 418 4.518249 TGCATCACGTTAATATGGACCAA 58.482 39.130 0.00 0.00 0.00 3.67
418 419 4.944317 TGCATCACGTTAATATGGACCAAA 59.056 37.500 0.00 0.00 0.00 3.28
419 420 5.592282 TGCATCACGTTAATATGGACCAAAT 59.408 36.000 0.00 0.00 0.00 2.32
420 421 6.096141 TGCATCACGTTAATATGGACCAAATT 59.904 34.615 0.00 0.00 0.00 1.82
421 422 6.978080 GCATCACGTTAATATGGACCAAATTT 59.022 34.615 0.00 0.00 0.00 1.82
422 423 7.043458 GCATCACGTTAATATGGACCAAATTTG 60.043 37.037 11.40 11.40 0.00 2.32
423 424 7.689446 TCACGTTAATATGGACCAAATTTGA 57.311 32.000 19.86 0.00 0.00 2.69
424 425 8.287439 TCACGTTAATATGGACCAAATTTGAT 57.713 30.769 19.86 1.03 0.00 2.57
425 426 9.397280 TCACGTTAATATGGACCAAATTTGATA 57.603 29.630 19.86 9.41 0.00 2.15
458 459 9.772973 ATTTAGACAACCGCATTAATATAGACA 57.227 29.630 0.00 0.00 0.00 3.41
459 460 8.812147 TTAGACAACCGCATTAATATAGACAG 57.188 34.615 0.00 0.00 0.00 3.51
460 461 6.223852 AGACAACCGCATTAATATAGACAGG 58.776 40.000 0.00 0.00 0.00 4.00
461 462 4.755123 ACAACCGCATTAATATAGACAGGC 59.245 41.667 0.00 0.00 0.00 4.85
462 463 4.617253 ACCGCATTAATATAGACAGGCA 57.383 40.909 0.00 0.00 0.00 4.75
463 464 4.968259 ACCGCATTAATATAGACAGGCAA 58.032 39.130 0.00 0.00 0.00 4.52
464 465 5.373222 ACCGCATTAATATAGACAGGCAAA 58.627 37.500 0.00 0.00 0.00 3.68
465 466 6.003950 ACCGCATTAATATAGACAGGCAAAT 58.996 36.000 0.00 0.00 0.00 2.32
466 467 6.149474 ACCGCATTAATATAGACAGGCAAATC 59.851 38.462 0.00 0.00 0.00 2.17
467 468 6.149308 CCGCATTAATATAGACAGGCAAATCA 59.851 38.462 0.00 0.00 0.00 2.57
468 469 7.017645 CGCATTAATATAGACAGGCAAATCAC 58.982 38.462 0.00 0.00 0.00 3.06
469 470 7.308435 GCATTAATATAGACAGGCAAATCACC 58.692 38.462 0.00 0.00 0.00 4.02
470 471 7.175641 GCATTAATATAGACAGGCAAATCACCT 59.824 37.037 0.00 0.00 38.35 4.00
471 472 9.725019 CATTAATATAGACAGGCAAATCACCTA 57.275 33.333 0.00 0.00 35.10 3.08
472 473 9.726438 ATTAATATAGACAGGCAAATCACCTAC 57.274 33.333 0.00 0.00 35.10 3.18
473 474 6.747414 ATATAGACAGGCAAATCACCTACA 57.253 37.500 0.00 0.00 35.10 2.74
474 475 5.636903 ATAGACAGGCAAATCACCTACAT 57.363 39.130 0.00 0.00 35.10 2.29
475 476 3.614092 AGACAGGCAAATCACCTACATG 58.386 45.455 0.00 0.00 35.10 3.21
476 477 3.264193 AGACAGGCAAATCACCTACATGA 59.736 43.478 0.00 0.00 35.10 3.07
477 478 4.080129 AGACAGGCAAATCACCTACATGAT 60.080 41.667 0.00 0.00 41.20 2.45
571 572 9.438228 TTTATATCTCATTACAACAAACGGTCA 57.562 29.630 0.00 0.00 0.00 4.02
572 573 9.607988 TTATATCTCATTACAACAAACGGTCAT 57.392 29.630 0.00 0.00 0.00 3.06
573 574 6.817765 ATCTCATTACAACAAACGGTCATT 57.182 33.333 0.00 0.00 0.00 2.57
574 575 5.996219 TCTCATTACAACAAACGGTCATTG 58.004 37.500 0.00 0.00 0.00 2.82
575 576 5.529430 TCTCATTACAACAAACGGTCATTGT 59.471 36.000 7.38 7.38 42.56 2.71
577 578 6.202937 TCATTACAACAAACGGTCATTGTTC 58.797 36.000 7.51 0.00 45.27 3.18
578 579 5.821516 TTACAACAAACGGTCATTGTTCT 57.178 34.783 7.51 1.03 45.27 3.01
579 580 6.922247 TTACAACAAACGGTCATTGTTCTA 57.078 33.333 7.51 0.22 45.27 2.10
580 581 5.821516 ACAACAAACGGTCATTGTTCTAA 57.178 34.783 7.73 0.00 45.27 2.10
581 582 6.385649 ACAACAAACGGTCATTGTTCTAAT 57.614 33.333 7.73 0.00 45.27 1.73
582 583 6.801575 ACAACAAACGGTCATTGTTCTAATT 58.198 32.000 7.73 0.00 45.27 1.40
583 584 7.932335 ACAACAAACGGTCATTGTTCTAATTA 58.068 30.769 7.73 0.00 45.27 1.40
584 585 8.407064 ACAACAAACGGTCATTGTTCTAATTAA 58.593 29.630 7.73 0.00 45.27 1.40
585 586 9.239002 CAACAAACGGTCATTGTTCTAATTAAA 57.761 29.630 7.73 0.00 45.27 1.52
586 587 9.974980 AACAAACGGTCATTGTTCTAATTAAAT 57.025 25.926 5.36 0.00 45.27 1.40
587 588 9.974980 ACAAACGGTCATTGTTCTAATTAAATT 57.025 25.926 0.00 0.00 37.74 1.82
592 593 9.210426 CGGTCATTGTTCTAATTAAATTTCTCG 57.790 33.333 0.00 0.00 0.00 4.04
593 594 9.010366 GGTCATTGTTCTAATTAAATTTCTCGC 57.990 33.333 0.00 0.00 0.00 5.03
594 595 9.554724 GTCATTGTTCTAATTAAATTTCTCGCA 57.445 29.630 0.00 0.00 0.00 5.10
660 661 4.778143 AACCCCCTGATGACGCGC 62.778 66.667 5.73 0.00 0.00 6.86
759 761 1.609794 ACCTCCGTCTCCAAGTCCC 60.610 63.158 0.00 0.00 0.00 4.46
771 773 3.248024 TCCAAGTCCCACTGAACACTAT 58.752 45.455 0.00 0.00 0.00 2.12
797 799 5.007136 CGAAGCTCCTAGAAATGAATGGAAC 59.993 44.000 0.00 0.00 0.00 3.62
805 807 6.540189 CCTAGAAATGAATGGAACGATCAACT 59.460 38.462 0.00 0.00 0.00 3.16
869 871 1.412074 GGAATTGACCCCTCATGCCAT 60.412 52.381 0.00 0.00 0.00 4.40
936 947 2.904932 GAGAAAAAGAATCAAGCACGCG 59.095 45.455 3.53 3.53 0.00 6.01
1004 1028 4.081406 ACAATTGAAGCTGTAGCAATGGA 58.919 39.130 13.59 0.00 45.16 3.41
1039 1063 1.064166 AGGCTCTGGTAACTACGGCTA 60.064 52.381 0.00 0.00 32.55 3.93
1702 1727 0.107606 TTTGCGTGTGTGGTACTGGT 60.108 50.000 0.00 0.00 0.00 4.00
1703 1728 0.751452 TTGCGTGTGTGGTACTGGTA 59.249 50.000 0.00 0.00 0.00 3.25
1704 1729 0.032403 TGCGTGTGTGGTACTGGTAC 59.968 55.000 2.58 2.58 35.40 3.34
1705 1730 0.316204 GCGTGTGTGGTACTGGTACT 59.684 55.000 10.19 0.00 36.36 2.73
1706 1731 1.933500 GCGTGTGTGGTACTGGTACTG 60.934 57.143 10.19 0.00 36.36 2.74
1723 1748 4.574828 GGTACTGAAGTGTGATGTTGTTGT 59.425 41.667 0.00 0.00 0.00 3.32
1725 1750 4.985413 ACTGAAGTGTGATGTTGTTGTTG 58.015 39.130 0.00 0.00 0.00 3.33
1739 1764 5.587043 TGTTGTTGTTGTCAGGTAACCTAAG 59.413 40.000 0.00 0.00 29.64 2.18
1756 1783 4.579753 ACCTAAGTTACCGATAGAGCTGTC 59.420 45.833 0.00 0.00 39.76 3.51
1804 1831 3.144657 ACCTGATCAGTCACATTTGCA 57.855 42.857 21.11 0.00 0.00 4.08
1821 1848 8.067189 CACATTTGCAAAACCCTACATTTTTAC 58.933 33.333 17.19 0.00 0.00 2.01
1850 1877 9.382275 CTTAATAATTGCTGGTTTGCCTTATTT 57.618 29.630 0.00 0.00 34.57 1.40
1857 1884 1.749063 GGTTTGCCTTATTTCTCCCCG 59.251 52.381 0.00 0.00 0.00 5.73
1907 1944 9.929180 TCATATCCAAGCATCTTACAATACTAC 57.071 33.333 0.00 0.00 0.00 2.73
1916 1953 7.039363 AGCATCTTACAATACTACCTCCATCTC 60.039 40.741 0.00 0.00 0.00 2.75
1929 1966 3.054802 CCTCCATCTCAGTTTACAAGGCT 60.055 47.826 0.00 0.00 0.00 4.58
1930 1967 4.566488 CCTCCATCTCAGTTTACAAGGCTT 60.566 45.833 0.00 0.00 0.00 4.35
1931 1968 4.326826 TCCATCTCAGTTTACAAGGCTTG 58.673 43.478 25.06 25.06 0.00 4.01
1932 1969 3.119708 CCATCTCAGTTTACAAGGCTTGC 60.120 47.826 26.45 10.61 0.00 4.01
1935 1972 1.953686 TCAGTTTACAAGGCTTGCACC 59.046 47.619 26.45 12.15 0.00 5.01
1947 1984 3.118592 AGGCTTGCACCTGTATCTAAGTC 60.119 47.826 0.00 0.00 39.13 3.01
1948 1985 2.860735 GCTTGCACCTGTATCTAAGTCG 59.139 50.000 0.00 0.00 0.00 4.18
1949 1986 3.676324 GCTTGCACCTGTATCTAAGTCGT 60.676 47.826 0.00 0.00 0.00 4.34
1950 1987 3.777465 TGCACCTGTATCTAAGTCGTC 57.223 47.619 0.00 0.00 0.00 4.20
1951 1988 3.086282 TGCACCTGTATCTAAGTCGTCA 58.914 45.455 0.00 0.00 0.00 4.35
1952 1989 3.508402 TGCACCTGTATCTAAGTCGTCAA 59.492 43.478 0.00 0.00 0.00 3.18
1953 1990 4.159693 TGCACCTGTATCTAAGTCGTCAAT 59.840 41.667 0.00 0.00 0.00 2.57
1954 1991 5.109903 GCACCTGTATCTAAGTCGTCAATT 58.890 41.667 0.00 0.00 0.00 2.32
1955 1992 5.581085 GCACCTGTATCTAAGTCGTCAATTT 59.419 40.000 0.00 0.00 0.00 1.82
1956 1993 6.755141 GCACCTGTATCTAAGTCGTCAATTTA 59.245 38.462 0.00 0.00 0.00 1.40
1957 1994 7.277098 GCACCTGTATCTAAGTCGTCAATTTAA 59.723 37.037 0.00 0.00 0.00 1.52
1958 1995 8.592998 CACCTGTATCTAAGTCGTCAATTTAAC 58.407 37.037 0.00 0.00 0.00 2.01
1959 1996 8.529476 ACCTGTATCTAAGTCGTCAATTTAACT 58.471 33.333 0.00 0.00 0.00 2.24
1960 1997 9.367444 CCTGTATCTAAGTCGTCAATTTAACTT 57.633 33.333 0.00 0.00 36.09 2.66
1969 2006 7.136772 AGTCGTCAATTTAACTTTTACAAGGC 58.863 34.615 0.00 0.00 33.82 4.35
1970 2007 7.012989 AGTCGTCAATTTAACTTTTACAAGGCT 59.987 33.333 0.00 0.00 33.82 4.58
1971 2008 7.646526 GTCGTCAATTTAACTTTTACAAGGCTT 59.353 33.333 0.00 0.00 33.82 4.35
1972 2009 7.646130 TCGTCAATTTAACTTTTACAAGGCTTG 59.354 33.333 25.06 25.06 33.82 4.01
1973 2010 7.564128 GTCAATTTAACTTTTACAAGGCTTGC 58.436 34.615 26.45 0.66 33.82 4.01
1974 2011 7.223777 GTCAATTTAACTTTTACAAGGCTTGCA 59.776 33.333 26.45 12.05 33.82 4.08
1975 2012 7.223777 TCAATTTAACTTTTACAAGGCTTGCAC 59.776 33.333 26.45 0.00 33.82 4.57
1976 2013 3.452755 AACTTTTACAAGGCTTGCACC 57.547 42.857 26.45 0.00 33.82 5.01
1977 2014 2.666317 ACTTTTACAAGGCTTGCACCT 58.334 42.857 26.45 10.11 43.91 4.00
1978 2015 2.362077 ACTTTTACAAGGCTTGCACCTG 59.638 45.455 26.45 15.95 39.93 4.00
1979 2016 0.673437 TTTACAAGGCTTGCACCTGC 59.327 50.000 26.45 0.00 39.93 4.85
2111 2154 9.769093 CCTTCTATTAAGTTGGTCAAATTAACG 57.231 33.333 15.42 11.12 41.57 3.18
2130 2173 4.465632 ACGACCTAGATACATGTGCAAA 57.534 40.909 9.11 0.00 0.00 3.68
2131 2174 4.827692 ACGACCTAGATACATGTGCAAAA 58.172 39.130 9.11 0.00 0.00 2.44
2132 2175 4.630069 ACGACCTAGATACATGTGCAAAAC 59.370 41.667 9.11 0.00 0.00 2.43
2133 2176 4.870426 CGACCTAGATACATGTGCAAAACT 59.130 41.667 9.11 0.00 0.00 2.66
2134 2177 5.351465 CGACCTAGATACATGTGCAAAACTT 59.649 40.000 9.11 0.00 0.00 2.66
2135 2178 6.500684 ACCTAGATACATGTGCAAAACTTG 57.499 37.500 9.11 0.00 0.00 3.16
2136 2179 6.003950 ACCTAGATACATGTGCAAAACTTGT 58.996 36.000 9.11 0.00 0.00 3.16
2137 2180 7.165485 ACCTAGATACATGTGCAAAACTTGTA 58.835 34.615 9.11 6.67 0.00 2.41
2138 2181 7.663905 ACCTAGATACATGTGCAAAACTTGTAA 59.336 33.333 9.11 0.00 0.00 2.41
2139 2182 8.511321 CCTAGATACATGTGCAAAACTTGTAAA 58.489 33.333 9.11 0.00 0.00 2.01
2140 2183 9.329913 CTAGATACATGTGCAAAACTTGTAAAC 57.670 33.333 9.11 6.31 0.00 2.01
2141 2184 7.940850 AGATACATGTGCAAAACTTGTAAACT 58.059 30.769 9.11 7.86 0.00 2.66
2142 2185 7.862372 AGATACATGTGCAAAACTTGTAAACTG 59.138 33.333 9.11 0.00 0.00 3.16
2143 2186 5.719173 ACATGTGCAAAACTTGTAAACTGT 58.281 33.333 0.00 0.00 0.00 3.55
2144 2187 5.576384 ACATGTGCAAAACTTGTAAACTGTG 59.424 36.000 0.00 0.00 0.00 3.66
2145 2188 3.923461 TGTGCAAAACTTGTAAACTGTGC 59.077 39.130 0.00 0.00 0.00 4.57
2146 2189 3.923461 GTGCAAAACTTGTAAACTGTGCA 59.077 39.130 0.00 0.00 38.35 4.57
2147 2190 4.387256 GTGCAAAACTTGTAAACTGTGCAA 59.613 37.500 0.00 0.00 41.93 4.08
2148 2191 4.991056 TGCAAAACTTGTAAACTGTGCAAA 59.009 33.333 0.00 0.00 37.78 3.68
2169 2212 7.173218 TGCAAAACTTGTAAACTGAGATAGAGG 59.827 37.037 0.00 0.00 0.00 3.69
2190 2233 4.645535 GGGAGTACCTTTTTCTTTACGGT 58.354 43.478 0.00 0.00 35.85 4.83
2209 2252 4.109766 CGGTCGAAGCATCTTACAATACA 58.890 43.478 0.00 0.00 0.00 2.29
2220 2263 9.073475 AGCATCTTACAATACACCAACTAAAAA 57.927 29.630 0.00 0.00 0.00 1.94
2221 2264 9.341899 GCATCTTACAATACACCAACTAAAAAG 57.658 33.333 0.00 0.00 0.00 2.27
2223 2266 7.878036 TCTTACAATACACCAACTAAAAAGGC 58.122 34.615 0.00 0.00 0.00 4.35
2224 2267 7.502895 TCTTACAATACACCAACTAAAAAGGCA 59.497 33.333 0.00 0.00 0.00 4.75
2225 2268 6.664428 ACAATACACCAACTAAAAAGGCAT 57.336 33.333 0.00 0.00 0.00 4.40
2226 2269 6.687604 ACAATACACCAACTAAAAAGGCATC 58.312 36.000 0.00 0.00 0.00 3.91
2227 2270 6.493458 ACAATACACCAACTAAAAAGGCATCT 59.507 34.615 0.00 0.00 0.00 2.90
2295 2351 8.232513 TGATAACCAACTAATATAGACGCGTAG 58.767 37.037 13.97 6.56 0.00 3.51
2309 2365 1.924524 CGCGTAGGAACTGTTGTATGG 59.075 52.381 0.00 0.00 41.52 2.74
2331 2387 6.919721 TGGTTGTTCAAGGAGTTAAATATGC 58.080 36.000 0.00 0.00 0.00 3.14
2362 2418 6.515272 TTCTGAAAATGTTAGGGCTTCATC 57.485 37.500 0.00 0.00 0.00 2.92
2363 2419 5.569355 TCTGAAAATGTTAGGGCTTCATCA 58.431 37.500 0.00 0.00 0.00 3.07
2364 2420 5.415701 TCTGAAAATGTTAGGGCTTCATCAC 59.584 40.000 0.00 0.00 0.00 3.06
2365 2421 5.324409 TGAAAATGTTAGGGCTTCATCACT 58.676 37.500 0.00 0.00 0.00 3.41
2366 2422 6.480763 TGAAAATGTTAGGGCTTCATCACTA 58.519 36.000 0.00 0.00 0.00 2.74
2389 2445 2.884012 TCAGCAAATCGGACACACAAAT 59.116 40.909 0.00 0.00 0.00 2.32
2428 2578 6.916360 AATTCTGAAAATGTTAGGGCTTCA 57.084 33.333 0.00 0.00 0.00 3.02
2430 2580 6.515272 TTCTGAAAATGTTAGGGCTTCATC 57.485 37.500 0.00 0.00 0.00 2.92
2432 2582 5.415701 TCTGAAAATGTTAGGGCTTCATCAC 59.584 40.000 0.00 0.00 0.00 3.06
2434 2584 2.332063 ATGTTAGGGCTTCATCACCG 57.668 50.000 0.00 0.00 0.00 4.94
2436 2586 1.349688 TGTTAGGGCTTCATCACCGTT 59.650 47.619 0.00 0.00 0.00 4.44
2437 2587 2.007608 GTTAGGGCTTCATCACCGTTC 58.992 52.381 0.00 0.00 0.00 3.95
2438 2588 1.271856 TAGGGCTTCATCACCGTTCA 58.728 50.000 0.00 0.00 0.00 3.18
2439 2589 0.036010 AGGGCTTCATCACCGTTCAG 60.036 55.000 0.00 0.00 0.00 3.02
2440 2590 1.648467 GGGCTTCATCACCGTTCAGC 61.648 60.000 0.00 0.00 0.00 4.26
2441 2591 0.955428 GGCTTCATCACCGTTCAGCA 60.955 55.000 0.00 0.00 0.00 4.41
2443 2593 1.266718 GCTTCATCACCGTTCAGCAAA 59.733 47.619 0.00 0.00 0.00 3.68
2444 2594 2.095059 GCTTCATCACCGTTCAGCAAAT 60.095 45.455 0.00 0.00 0.00 2.32
2445 2595 3.612479 GCTTCATCACCGTTCAGCAAATT 60.612 43.478 0.00 0.00 0.00 1.82
2446 2596 3.557577 TCATCACCGTTCAGCAAATTG 57.442 42.857 0.00 0.00 0.00 2.32
2447 2597 2.228582 TCATCACCGTTCAGCAAATTGG 59.771 45.455 0.00 0.00 0.00 3.16
2449 2599 1.606668 TCACCGTTCAGCAAATTGGAC 59.393 47.619 0.00 0.00 0.00 4.02
2451 2601 1.336755 ACCGTTCAGCAAATTGGACAC 59.663 47.619 0.00 0.00 0.00 3.67
2452 2602 1.336440 CCGTTCAGCAAATTGGACACA 59.664 47.619 0.00 0.00 0.00 3.72
2453 2603 2.384382 CGTTCAGCAAATTGGACACAC 58.616 47.619 0.00 0.00 0.00 3.82
2454 2604 2.384382 GTTCAGCAAATTGGACACACG 58.616 47.619 0.00 0.00 0.00 4.49
2455 2605 0.950836 TCAGCAAATTGGACACACGG 59.049 50.000 0.00 0.00 0.00 4.94
2456 2606 0.039256 CAGCAAATTGGACACACGGG 60.039 55.000 0.00 0.00 0.00 5.28
2457 2607 1.178534 AGCAAATTGGACACACGGGG 61.179 55.000 0.00 0.00 0.00 5.73
2458 2608 1.175983 GCAAATTGGACACACGGGGA 61.176 55.000 0.00 0.00 0.00 4.81
2483 2649 4.464112 GAGCGTCTAACACAAAACATTCC 58.536 43.478 0.00 0.00 0.00 3.01
2484 2650 3.059188 AGCGTCTAACACAAAACATTCCG 60.059 43.478 0.00 0.00 0.00 4.30
2485 2651 3.059461 GCGTCTAACACAAAACATTCCGA 60.059 43.478 0.00 0.00 0.00 4.55
2486 2652 4.553156 GCGTCTAACACAAAACATTCCGAA 60.553 41.667 0.00 0.00 0.00 4.30
2487 2653 5.685841 CGTCTAACACAAAACATTCCGAAT 58.314 37.500 0.00 0.00 0.00 3.34
2488 2654 5.563751 CGTCTAACACAAAACATTCCGAATG 59.436 40.000 17.88 17.88 44.48 2.67
2489 2655 6.565060 CGTCTAACACAAAACATTCCGAATGA 60.565 38.462 24.79 1.42 41.46 2.57
2555 3064 2.762745 TGAAGTTCAGTTAGGCCGAAC 58.237 47.619 20.04 20.04 39.44 3.95
2558 3067 1.342174 AGTTCAGTTAGGCCGAACGAA 59.658 47.619 21.17 21.72 43.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.171003 AGCCCAAAGCCACTGTTTATC 58.829 47.619 0.00 0.00 45.47 1.75
1 2 2.309136 AGCCCAAAGCCACTGTTTAT 57.691 45.000 0.00 0.00 45.47 1.40
2 3 1.960689 GAAGCCCAAAGCCACTGTTTA 59.039 47.619 0.00 0.00 45.47 2.01
3 4 0.752658 GAAGCCCAAAGCCACTGTTT 59.247 50.000 0.00 0.00 45.47 2.83
4 5 1.115326 GGAAGCCCAAAGCCACTGTT 61.115 55.000 0.00 0.00 45.47 3.16
5 6 1.531602 GGAAGCCCAAAGCCACTGT 60.532 57.895 0.00 0.00 45.47 3.55
6 7 2.629656 CGGAAGCCCAAAGCCACTG 61.630 63.158 0.00 0.00 45.47 3.66
7 8 2.282462 CGGAAGCCCAAAGCCACT 60.282 61.111 0.00 0.00 45.47 4.00
19 20 0.592637 TTCACATGCAACAGCGGAAG 59.407 50.000 0.00 0.00 0.00 3.46
20 21 1.246649 ATTCACATGCAACAGCGGAA 58.753 45.000 0.00 0.00 0.00 4.30
21 22 1.199789 GAATTCACATGCAACAGCGGA 59.800 47.619 0.00 0.00 0.00 5.54
22 23 1.068402 TGAATTCACATGCAACAGCGG 60.068 47.619 3.38 0.00 0.00 5.52
23 24 2.334971 TGAATTCACATGCAACAGCG 57.665 45.000 3.38 0.00 0.00 5.18
24 25 3.430895 CCTTTGAATTCACATGCAACAGC 59.569 43.478 7.89 0.00 26.08 4.40
25 26 3.991773 CCCTTTGAATTCACATGCAACAG 59.008 43.478 7.89 0.00 26.08 3.16
26 27 3.387374 ACCCTTTGAATTCACATGCAACA 59.613 39.130 7.89 0.00 26.08 3.33
27 28 3.993920 ACCCTTTGAATTCACATGCAAC 58.006 40.909 7.89 0.00 26.08 4.17
28 29 4.686191 AACCCTTTGAATTCACATGCAA 57.314 36.364 7.89 0.00 0.00 4.08
29 30 4.686191 AAACCCTTTGAATTCACATGCA 57.314 36.364 7.89 0.00 0.00 3.96
30 31 5.537188 TGTAAACCCTTTGAATTCACATGC 58.463 37.500 7.89 0.00 0.00 4.06
31 32 9.874205 ATTATGTAAACCCTTTGAATTCACATG 57.126 29.630 7.89 0.00 0.00 3.21
33 34 8.240682 CGATTATGTAAACCCTTTGAATTCACA 58.759 33.333 7.89 0.00 0.00 3.58
34 35 7.700656 CCGATTATGTAAACCCTTTGAATTCAC 59.299 37.037 7.89 0.00 0.00 3.18
35 36 7.394923 ACCGATTATGTAAACCCTTTGAATTCA 59.605 33.333 3.38 3.38 0.00 2.57
36 37 7.768240 ACCGATTATGTAAACCCTTTGAATTC 58.232 34.615 0.00 0.00 0.00 2.17
37 38 7.712204 ACCGATTATGTAAACCCTTTGAATT 57.288 32.000 0.00 0.00 0.00 2.17
38 39 7.394923 TCAACCGATTATGTAAACCCTTTGAAT 59.605 33.333 0.00 0.00 0.00 2.57
39 40 6.715718 TCAACCGATTATGTAAACCCTTTGAA 59.284 34.615 0.00 0.00 0.00 2.69
40 41 6.239396 TCAACCGATTATGTAAACCCTTTGA 58.761 36.000 0.00 0.00 0.00 2.69
41 42 6.503589 TCAACCGATTATGTAAACCCTTTG 57.496 37.500 0.00 0.00 0.00 2.77
42 43 7.231925 AGTTTCAACCGATTATGTAAACCCTTT 59.768 33.333 0.00 0.00 0.00 3.11
43 44 6.717997 AGTTTCAACCGATTATGTAAACCCTT 59.282 34.615 0.00 0.00 0.00 3.95
44 45 6.243148 AGTTTCAACCGATTATGTAAACCCT 58.757 36.000 0.00 0.00 0.00 4.34
45 46 6.505044 AGTTTCAACCGATTATGTAAACCC 57.495 37.500 0.00 0.00 0.00 4.11
46 47 9.896263 TTTTAGTTTCAACCGATTATGTAAACC 57.104 29.630 0.00 0.00 0.00 3.27
55 56 9.353999 GCAGATTATTTTTAGTTTCAACCGATT 57.646 29.630 0.00 0.00 0.00 3.34
56 57 8.739972 AGCAGATTATTTTTAGTTTCAACCGAT 58.260 29.630 0.00 0.00 0.00 4.18
57 58 8.106247 AGCAGATTATTTTTAGTTTCAACCGA 57.894 30.769 0.00 0.00 0.00 4.69
58 59 9.274065 GTAGCAGATTATTTTTAGTTTCAACCG 57.726 33.333 0.00 0.00 0.00 4.44
59 60 9.569167 GGTAGCAGATTATTTTTAGTTTCAACC 57.431 33.333 0.00 0.00 0.00 3.77
60 61 9.569167 GGGTAGCAGATTATTTTTAGTTTCAAC 57.431 33.333 0.00 0.00 0.00 3.18
61 62 8.455682 CGGGTAGCAGATTATTTTTAGTTTCAA 58.544 33.333 0.00 0.00 0.00 2.69
62 63 7.825270 TCGGGTAGCAGATTATTTTTAGTTTCA 59.175 33.333 0.00 0.00 0.00 2.69
63 64 8.205131 TCGGGTAGCAGATTATTTTTAGTTTC 57.795 34.615 0.00 0.00 0.00 2.78
64 65 8.621286 CATCGGGTAGCAGATTATTTTTAGTTT 58.379 33.333 4.74 0.00 0.00 2.66
65 66 7.990886 TCATCGGGTAGCAGATTATTTTTAGTT 59.009 33.333 4.74 0.00 0.00 2.24
66 67 7.506114 TCATCGGGTAGCAGATTATTTTTAGT 58.494 34.615 4.74 0.00 0.00 2.24
67 68 7.962964 TCATCGGGTAGCAGATTATTTTTAG 57.037 36.000 4.74 0.00 0.00 1.85
68 69 8.918202 ATTCATCGGGTAGCAGATTATTTTTA 57.082 30.769 4.74 0.00 0.00 1.52
69 70 7.823745 ATTCATCGGGTAGCAGATTATTTTT 57.176 32.000 4.74 0.00 0.00 1.94
70 71 7.607991 CCTATTCATCGGGTAGCAGATTATTTT 59.392 37.037 4.74 0.00 0.00 1.82
71 72 7.106239 CCTATTCATCGGGTAGCAGATTATTT 58.894 38.462 4.74 0.00 0.00 1.40
72 73 6.644347 CCTATTCATCGGGTAGCAGATTATT 58.356 40.000 4.74 0.00 0.00 1.40
73 74 5.395768 GCCTATTCATCGGGTAGCAGATTAT 60.396 44.000 4.74 5.07 0.00 1.28
74 75 4.081642 GCCTATTCATCGGGTAGCAGATTA 60.082 45.833 4.74 0.00 0.00 1.75
75 76 3.307059 GCCTATTCATCGGGTAGCAGATT 60.307 47.826 4.74 0.00 0.00 2.40
76 77 2.234908 GCCTATTCATCGGGTAGCAGAT 59.765 50.000 1.44 1.44 0.00 2.90
77 78 1.618837 GCCTATTCATCGGGTAGCAGA 59.381 52.381 0.00 0.00 0.00 4.26
78 79 1.670087 CGCCTATTCATCGGGTAGCAG 60.670 57.143 0.00 0.00 0.00 4.24
79 80 0.317160 CGCCTATTCATCGGGTAGCA 59.683 55.000 0.00 0.00 0.00 3.49
80 81 0.317479 ACGCCTATTCATCGGGTAGC 59.683 55.000 0.00 0.00 0.00 3.58
81 82 2.814280 AACGCCTATTCATCGGGTAG 57.186 50.000 0.00 0.00 0.00 3.18
82 83 2.224113 GGAAACGCCTATTCATCGGGTA 60.224 50.000 0.00 0.00 0.00 3.69
83 84 1.474498 GGAAACGCCTATTCATCGGGT 60.474 52.381 0.00 0.00 0.00 5.28
84 85 1.226746 GGAAACGCCTATTCATCGGG 58.773 55.000 0.00 0.00 0.00 5.14
85 86 1.948104 TGGAAACGCCTATTCATCGG 58.052 50.000 0.00 0.00 37.63 4.18
86 87 4.349663 TTTTGGAAACGCCTATTCATCG 57.650 40.909 0.00 0.00 37.63 3.84
106 107 6.588719 TCGAAGTTTGGGATGATGATTTTT 57.411 33.333 0.00 0.00 0.00 1.94
107 108 6.780457 ATCGAAGTTTGGGATGATGATTTT 57.220 33.333 0.00 0.00 0.00 1.82
108 109 9.003658 GTATATCGAAGTTTGGGATGATGATTT 57.996 33.333 0.00 0.00 0.00 2.17
109 110 8.156820 TGTATATCGAAGTTTGGGATGATGATT 58.843 33.333 0.00 0.00 0.00 2.57
110 111 7.679783 TGTATATCGAAGTTTGGGATGATGAT 58.320 34.615 0.00 0.00 0.00 2.45
111 112 7.061566 TGTATATCGAAGTTTGGGATGATGA 57.938 36.000 0.00 0.00 0.00 2.92
112 113 7.226523 TGTTGTATATCGAAGTTTGGGATGATG 59.773 37.037 0.00 0.00 0.00 3.07
113 114 7.279615 TGTTGTATATCGAAGTTTGGGATGAT 58.720 34.615 0.00 0.00 0.00 2.45
114 115 6.645306 TGTTGTATATCGAAGTTTGGGATGA 58.355 36.000 0.00 0.00 0.00 2.92
115 116 6.761242 TCTGTTGTATATCGAAGTTTGGGATG 59.239 38.462 0.00 0.00 0.00 3.51
116 117 6.884832 TCTGTTGTATATCGAAGTTTGGGAT 58.115 36.000 0.00 0.00 0.00 3.85
117 118 6.288941 TCTGTTGTATATCGAAGTTTGGGA 57.711 37.500 0.00 0.00 0.00 4.37
118 119 6.978343 TTCTGTTGTATATCGAAGTTTGGG 57.022 37.500 0.00 0.00 0.00 4.12
119 120 9.490663 GATTTTCTGTTGTATATCGAAGTTTGG 57.509 33.333 0.00 0.00 0.00 3.28
122 123 8.665685 GGTGATTTTCTGTTGTATATCGAAGTT 58.334 33.333 0.00 0.00 0.00 2.66
123 124 7.822334 TGGTGATTTTCTGTTGTATATCGAAGT 59.178 33.333 0.00 0.00 0.00 3.01
124 125 8.196802 TGGTGATTTTCTGTTGTATATCGAAG 57.803 34.615 0.00 0.00 0.00 3.79
125 126 8.731275 ATGGTGATTTTCTGTTGTATATCGAA 57.269 30.769 0.00 0.00 0.00 3.71
126 127 7.441157 GGATGGTGATTTTCTGTTGTATATCGA 59.559 37.037 0.00 0.00 0.00 3.59
127 128 7.569408 CGGATGGTGATTTTCTGTTGTATATCG 60.569 40.741 0.00 0.00 0.00 2.92
128 129 7.441157 TCGGATGGTGATTTTCTGTTGTATATC 59.559 37.037 0.00 0.00 0.00 1.63
129 130 7.279615 TCGGATGGTGATTTTCTGTTGTATAT 58.720 34.615 0.00 0.00 0.00 0.86
130 131 6.645306 TCGGATGGTGATTTTCTGTTGTATA 58.355 36.000 0.00 0.00 0.00 1.47
131 132 5.496556 TCGGATGGTGATTTTCTGTTGTAT 58.503 37.500 0.00 0.00 0.00 2.29
132 133 4.900684 TCGGATGGTGATTTTCTGTTGTA 58.099 39.130 0.00 0.00 0.00 2.41
133 134 3.750371 TCGGATGGTGATTTTCTGTTGT 58.250 40.909 0.00 0.00 0.00 3.32
134 135 4.764679 TTCGGATGGTGATTTTCTGTTG 57.235 40.909 0.00 0.00 0.00 3.33
135 136 4.827284 AGTTTCGGATGGTGATTTTCTGTT 59.173 37.500 0.00 0.00 0.00 3.16
136 137 4.398319 AGTTTCGGATGGTGATTTTCTGT 58.602 39.130 0.00 0.00 0.00 3.41
137 138 5.376854 AAGTTTCGGATGGTGATTTTCTG 57.623 39.130 0.00 0.00 0.00 3.02
138 139 7.519032 TTAAAGTTTCGGATGGTGATTTTCT 57.481 32.000 0.00 0.00 0.00 2.52
139 140 8.026607 TCATTAAAGTTTCGGATGGTGATTTTC 58.973 33.333 0.00 0.00 0.00 2.29
140 141 7.891561 TCATTAAAGTTTCGGATGGTGATTTT 58.108 30.769 0.00 0.00 0.00 1.82
141 142 7.461182 TCATTAAAGTTTCGGATGGTGATTT 57.539 32.000 0.00 0.00 0.00 2.17
142 143 6.404734 GCTCATTAAAGTTTCGGATGGTGATT 60.405 38.462 0.00 0.00 0.00 2.57
143 144 5.066505 GCTCATTAAAGTTTCGGATGGTGAT 59.933 40.000 0.00 0.00 0.00 3.06
144 145 4.394920 GCTCATTAAAGTTTCGGATGGTGA 59.605 41.667 0.00 0.00 0.00 4.02
145 146 4.438744 GGCTCATTAAAGTTTCGGATGGTG 60.439 45.833 0.00 0.00 0.00 4.17
146 147 3.694566 GGCTCATTAAAGTTTCGGATGGT 59.305 43.478 0.00 0.00 0.00 3.55
147 148 3.066760 GGGCTCATTAAAGTTTCGGATGG 59.933 47.826 0.00 0.00 0.00 3.51
148 149 3.242739 CGGGCTCATTAAAGTTTCGGATG 60.243 47.826 0.00 0.00 0.00 3.51
149 150 2.943033 CGGGCTCATTAAAGTTTCGGAT 59.057 45.455 0.00 0.00 0.00 4.18
150 151 2.289819 ACGGGCTCATTAAAGTTTCGGA 60.290 45.455 0.00 0.00 0.00 4.55
151 152 2.081462 ACGGGCTCATTAAAGTTTCGG 58.919 47.619 0.00 0.00 0.00 4.30
152 153 3.058501 ACAACGGGCTCATTAAAGTTTCG 60.059 43.478 0.00 0.00 0.00 3.46
153 154 4.499037 ACAACGGGCTCATTAAAGTTTC 57.501 40.909 0.00 0.00 0.00 2.78
154 155 4.339814 TCAACAACGGGCTCATTAAAGTTT 59.660 37.500 0.00 0.00 0.00 2.66
155 156 3.886505 TCAACAACGGGCTCATTAAAGTT 59.113 39.130 0.00 0.00 0.00 2.66
156 157 3.252458 GTCAACAACGGGCTCATTAAAGT 59.748 43.478 0.00 0.00 0.00 2.66
157 158 3.821841 GTCAACAACGGGCTCATTAAAG 58.178 45.455 0.00 0.00 0.00 1.85
158 159 3.907894 GTCAACAACGGGCTCATTAAA 57.092 42.857 0.00 0.00 0.00 1.52
170 171 3.480668 CGTGGATGTTTTTCGTCAACAAC 59.519 43.478 1.90 0.21 37.67 3.32
171 172 3.686128 CGTGGATGTTTTTCGTCAACAA 58.314 40.909 1.90 0.00 37.67 2.83
172 173 2.539953 GCGTGGATGTTTTTCGTCAACA 60.540 45.455 0.51 0.51 36.15 3.33
173 174 2.041244 GCGTGGATGTTTTTCGTCAAC 58.959 47.619 0.00 0.00 33.78 3.18
174 175 1.002251 GGCGTGGATGTTTTTCGTCAA 60.002 47.619 0.00 0.00 34.01 3.18
175 176 0.589223 GGCGTGGATGTTTTTCGTCA 59.411 50.000 0.00 0.00 34.01 4.35
176 177 0.452122 CGGCGTGGATGTTTTTCGTC 60.452 55.000 0.00 0.00 0.00 4.20
177 178 0.881159 TCGGCGTGGATGTTTTTCGT 60.881 50.000 6.85 0.00 0.00 3.85
178 179 0.236187 TTCGGCGTGGATGTTTTTCG 59.764 50.000 6.85 0.00 0.00 3.46
179 180 1.002251 TGTTCGGCGTGGATGTTTTTC 60.002 47.619 6.85 0.00 0.00 2.29
180 181 1.001815 CTGTTCGGCGTGGATGTTTTT 60.002 47.619 6.85 0.00 0.00 1.94
181 182 0.591170 CTGTTCGGCGTGGATGTTTT 59.409 50.000 6.85 0.00 0.00 2.43
182 183 0.250124 TCTGTTCGGCGTGGATGTTT 60.250 50.000 6.85 0.00 0.00 2.83
183 184 0.250124 TTCTGTTCGGCGTGGATGTT 60.250 50.000 6.85 0.00 0.00 2.71
184 185 0.949105 GTTCTGTTCGGCGTGGATGT 60.949 55.000 6.85 0.00 0.00 3.06
185 186 0.670546 AGTTCTGTTCGGCGTGGATG 60.671 55.000 6.85 0.00 0.00 3.51
186 187 0.034896 AAGTTCTGTTCGGCGTGGAT 59.965 50.000 6.85 0.00 0.00 3.41
187 188 0.179067 AAAGTTCTGTTCGGCGTGGA 60.179 50.000 6.85 0.00 0.00 4.02
188 189 0.661020 AAAAGTTCTGTTCGGCGTGG 59.339 50.000 6.85 0.00 0.00 4.94
189 190 2.031683 AGAAAAAGTTCTGTTCGGCGTG 59.968 45.455 6.85 0.00 42.73 5.34
190 191 2.285977 AGAAAAAGTTCTGTTCGGCGT 58.714 42.857 6.85 0.00 42.73 5.68
191 192 3.002348 AGAAGAAAAAGTTCTGTTCGGCG 59.998 43.478 0.00 0.00 43.59 6.46
192 193 4.273724 AGAGAAGAAAAAGTTCTGTTCGGC 59.726 41.667 0.00 0.00 43.59 5.54
193 194 5.993106 AGAGAAGAAAAAGTTCTGTTCGG 57.007 39.130 0.00 0.00 43.59 4.30
194 195 7.701809 AGTAGAGAAGAAAAAGTTCTGTTCG 57.298 36.000 0.00 0.00 43.59 3.95
195 196 9.752961 AGTAGTAGAGAAGAAAAAGTTCTGTTC 57.247 33.333 0.00 0.00 43.59 3.18
227 228 7.099120 ACATCTGAAAAAGAAACACTGCTTTT 58.901 30.769 0.00 0.00 43.87 2.27
228 229 6.633856 ACATCTGAAAAAGAAACACTGCTTT 58.366 32.000 0.00 0.00 38.79 3.51
229 230 6.127647 TGACATCTGAAAAAGAAACACTGCTT 60.128 34.615 0.00 0.00 38.79 3.91
230 231 5.357878 TGACATCTGAAAAAGAAACACTGCT 59.642 36.000 0.00 0.00 38.79 4.24
231 232 5.581605 TGACATCTGAAAAAGAAACACTGC 58.418 37.500 0.00 0.00 38.79 4.40
232 233 7.805071 GGTATGACATCTGAAAAAGAAACACTG 59.195 37.037 0.00 0.00 38.79 3.66
233 234 7.502226 TGGTATGACATCTGAAAAAGAAACACT 59.498 33.333 0.00 0.00 38.79 3.55
234 235 7.591426 GTGGTATGACATCTGAAAAAGAAACAC 59.409 37.037 0.00 0.00 38.79 3.32
235 236 7.502226 AGTGGTATGACATCTGAAAAAGAAACA 59.498 33.333 0.00 0.00 38.79 2.83
236 237 7.875971 AGTGGTATGACATCTGAAAAAGAAAC 58.124 34.615 0.00 0.00 38.79 2.78
237 238 8.463930 AAGTGGTATGACATCTGAAAAAGAAA 57.536 30.769 0.00 0.00 38.79 2.52
238 239 8.352201 CAAAGTGGTATGACATCTGAAAAAGAA 58.648 33.333 0.00 0.00 38.79 2.52
239 240 7.502226 ACAAAGTGGTATGACATCTGAAAAAGA 59.498 33.333 0.00 0.00 39.94 2.52
240 241 7.651808 ACAAAGTGGTATGACATCTGAAAAAG 58.348 34.615 0.00 0.00 0.00 2.27
241 242 7.284261 TGACAAAGTGGTATGACATCTGAAAAA 59.716 33.333 0.00 0.00 0.00 1.94
242 243 6.770303 TGACAAAGTGGTATGACATCTGAAAA 59.230 34.615 0.00 0.00 0.00 2.29
243 244 6.295249 TGACAAAGTGGTATGACATCTGAAA 58.705 36.000 0.00 0.00 0.00 2.69
244 245 5.863965 TGACAAAGTGGTATGACATCTGAA 58.136 37.500 0.00 0.00 0.00 3.02
245 246 5.482163 TGACAAAGTGGTATGACATCTGA 57.518 39.130 0.00 0.00 0.00 3.27
246 247 5.106555 GGTTGACAAAGTGGTATGACATCTG 60.107 44.000 0.00 0.00 0.00 2.90
247 248 5.003804 GGTTGACAAAGTGGTATGACATCT 58.996 41.667 0.00 0.00 0.00 2.90
248 249 4.759693 TGGTTGACAAAGTGGTATGACATC 59.240 41.667 0.00 0.00 0.00 3.06
249 250 4.724399 TGGTTGACAAAGTGGTATGACAT 58.276 39.130 0.00 0.00 0.00 3.06
250 251 4.157849 TGGTTGACAAAGTGGTATGACA 57.842 40.909 0.00 0.00 0.00 3.58
251 252 5.473504 AGATTGGTTGACAAAGTGGTATGAC 59.526 40.000 0.00 0.00 43.46 3.06
252 253 5.630121 AGATTGGTTGACAAAGTGGTATGA 58.370 37.500 0.00 0.00 43.46 2.15
253 254 5.106157 GGAGATTGGTTGACAAAGTGGTATG 60.106 44.000 0.00 0.00 43.46 2.39
254 255 5.010282 GGAGATTGGTTGACAAAGTGGTAT 58.990 41.667 0.00 0.00 43.46 2.73
255 256 4.394729 GGAGATTGGTTGACAAAGTGGTA 58.605 43.478 0.00 0.00 43.46 3.25
256 257 3.222603 GGAGATTGGTTGACAAAGTGGT 58.777 45.455 0.00 0.00 43.46 4.16
257 258 2.558359 GGGAGATTGGTTGACAAAGTGG 59.442 50.000 0.00 0.00 43.46 4.00
258 259 2.558359 GGGGAGATTGGTTGACAAAGTG 59.442 50.000 0.00 0.00 43.46 3.16
259 260 2.490902 GGGGGAGATTGGTTGACAAAGT 60.491 50.000 0.00 0.00 43.46 2.66
260 261 2.171003 GGGGGAGATTGGTTGACAAAG 58.829 52.381 0.00 0.00 43.46 2.77
261 262 2.302587 GGGGGAGATTGGTTGACAAA 57.697 50.000 0.00 0.00 43.46 2.83
277 278 0.269173 AGGGACAAGATAGGAGGGGG 59.731 60.000 0.00 0.00 0.00 5.40
278 279 1.723288 GAGGGACAAGATAGGAGGGG 58.277 60.000 0.00 0.00 0.00 4.79
279 280 1.062121 TGGAGGGACAAGATAGGAGGG 60.062 57.143 0.00 0.00 0.00 4.30
280 281 2.478872 TGGAGGGACAAGATAGGAGG 57.521 55.000 0.00 0.00 0.00 4.30
281 282 3.969976 TCAATGGAGGGACAAGATAGGAG 59.030 47.826 0.00 0.00 0.00 3.69
282 283 4.007581 TCAATGGAGGGACAAGATAGGA 57.992 45.455 0.00 0.00 0.00 2.94
283 284 4.989875 ATCAATGGAGGGACAAGATAGG 57.010 45.455 0.00 0.00 0.00 2.57
284 285 7.651027 AAAAATCAATGGAGGGACAAGATAG 57.349 36.000 0.00 0.00 0.00 2.08
306 307 1.670791 AAGACCGGTTGAGCGAAAAA 58.329 45.000 9.42 0.00 0.00 1.94
307 308 1.670791 AAAGACCGGTTGAGCGAAAA 58.329 45.000 9.42 0.00 0.00 2.29
308 309 1.332375 CAAAAGACCGGTTGAGCGAAA 59.668 47.619 9.42 0.00 0.00 3.46
309 310 0.941542 CAAAAGACCGGTTGAGCGAA 59.058 50.000 9.42 0.00 0.00 4.70
310 311 0.179067 ACAAAAGACCGGTTGAGCGA 60.179 50.000 9.42 0.00 0.00 4.93
311 312 0.234884 GACAAAAGACCGGTTGAGCG 59.765 55.000 9.42 0.00 0.00 5.03
312 313 0.591659 GGACAAAAGACCGGTTGAGC 59.408 55.000 9.42 0.00 0.00 4.26
313 314 1.235724 GGGACAAAAGACCGGTTGAG 58.764 55.000 9.42 0.00 0.00 3.02
314 315 0.547075 TGGGACAAAAGACCGGTTGA 59.453 50.000 9.42 0.00 31.92 3.18
315 316 0.666374 GTGGGACAAAAGACCGGTTG 59.334 55.000 9.42 5.29 44.16 3.77
316 317 0.256464 TGTGGGACAAAAGACCGGTT 59.744 50.000 9.42 0.00 44.16 4.44
317 318 0.464916 GTGTGGGACAAAAGACCGGT 60.465 55.000 6.92 6.92 44.16 5.28
318 319 0.464735 TGTGTGGGACAAAAGACCGG 60.465 55.000 0.00 0.00 44.16 5.28
319 320 0.661020 GTGTGTGGGACAAAAGACCG 59.339 55.000 0.00 0.00 44.16 4.79
320 321 1.029681 GGTGTGTGGGACAAAAGACC 58.970 55.000 0.00 0.00 44.16 3.85
321 322 1.029681 GGGTGTGTGGGACAAAAGAC 58.970 55.000 0.00 0.00 44.16 3.01
322 323 0.923358 AGGGTGTGTGGGACAAAAGA 59.077 50.000 0.00 0.00 44.16 2.52
323 324 1.775385 AAGGGTGTGTGGGACAAAAG 58.225 50.000 0.00 0.00 44.16 2.27
324 325 1.827969 CAAAGGGTGTGTGGGACAAAA 59.172 47.619 0.00 0.00 44.16 2.44
325 326 1.272760 ACAAAGGGTGTGTGGGACAAA 60.273 47.619 0.00 0.00 39.72 2.83
326 327 0.333312 ACAAAGGGTGTGTGGGACAA 59.667 50.000 0.00 0.00 39.72 3.18
327 328 0.106918 GACAAAGGGTGTGTGGGACA 60.107 55.000 0.00 0.00 41.96 4.02
328 329 0.182775 AGACAAAGGGTGTGTGGGAC 59.817 55.000 0.00 0.00 41.96 4.46
329 330 0.182537 CAGACAAAGGGTGTGTGGGA 59.817 55.000 0.00 0.00 45.56 4.37
330 331 2.719376 CAGACAAAGGGTGTGTGGG 58.281 57.895 0.00 0.00 45.56 4.61
333 334 0.751643 GGTGCAGACAAAGGGTGTGT 60.752 55.000 0.00 0.00 42.51 3.72
334 335 0.466189 AGGTGCAGACAAAGGGTGTG 60.466 55.000 0.00 0.00 41.96 3.82
335 336 0.258774 AAGGTGCAGACAAAGGGTGT 59.741 50.000 0.00 0.00 45.74 4.16
336 337 2.270352 TAAGGTGCAGACAAAGGGTG 57.730 50.000 0.00 0.00 0.00 4.61
337 338 2.290960 GGATAAGGTGCAGACAAAGGGT 60.291 50.000 0.00 0.00 0.00 4.34
338 339 2.290896 TGGATAAGGTGCAGACAAAGGG 60.291 50.000 0.00 0.00 0.00 3.95
339 340 3.071874 TGGATAAGGTGCAGACAAAGG 57.928 47.619 0.00 0.00 0.00 3.11
340 341 5.278169 GCATATGGATAAGGTGCAGACAAAG 60.278 44.000 4.56 0.00 35.93 2.77
341 342 4.580167 GCATATGGATAAGGTGCAGACAAA 59.420 41.667 4.56 0.00 35.93 2.83
342 343 4.136796 GCATATGGATAAGGTGCAGACAA 58.863 43.478 4.56 0.00 35.93 3.18
343 344 3.392285 AGCATATGGATAAGGTGCAGACA 59.608 43.478 4.56 0.00 38.23 3.41
344 345 4.013267 AGCATATGGATAAGGTGCAGAC 57.987 45.455 4.56 0.00 38.23 3.51
345 346 4.712051 AAGCATATGGATAAGGTGCAGA 57.288 40.909 4.56 0.00 38.23 4.26
346 347 6.175471 TGATAAGCATATGGATAAGGTGCAG 58.825 40.000 4.56 0.00 38.23 4.41
347 348 6.125589 TGATAAGCATATGGATAAGGTGCA 57.874 37.500 4.56 0.00 38.23 4.57
348 349 7.337689 TGATTGATAAGCATATGGATAAGGTGC 59.662 37.037 4.56 0.00 36.11 5.01
349 350 8.797350 TGATTGATAAGCATATGGATAAGGTG 57.203 34.615 4.56 0.00 0.00 4.00
350 351 9.986157 ATTGATTGATAAGCATATGGATAAGGT 57.014 29.630 4.56 0.00 0.00 3.50
378 379 9.800433 ACGTGATGCAATTTGATAAATAATTCA 57.200 25.926 0.00 0.00 0.00 2.57
386 387 9.676195 CCATATTAACGTGATGCAATTTGATAA 57.324 29.630 0.00 0.00 0.00 1.75
387 388 9.061435 TCCATATTAACGTGATGCAATTTGATA 57.939 29.630 0.00 0.00 0.00 2.15
388 389 7.862372 GTCCATATTAACGTGATGCAATTTGAT 59.138 33.333 0.00 0.00 0.00 2.57
389 390 7.192913 GTCCATATTAACGTGATGCAATTTGA 58.807 34.615 0.00 0.00 0.00 2.69
390 391 6.417635 GGTCCATATTAACGTGATGCAATTTG 59.582 38.462 0.00 0.00 0.00 2.32
391 392 6.096141 TGGTCCATATTAACGTGATGCAATTT 59.904 34.615 0.00 0.00 0.00 1.82
392 393 5.592282 TGGTCCATATTAACGTGATGCAATT 59.408 36.000 0.00 0.00 0.00 2.32
393 394 5.129634 TGGTCCATATTAACGTGATGCAAT 58.870 37.500 0.00 0.00 0.00 3.56
394 395 4.518249 TGGTCCATATTAACGTGATGCAA 58.482 39.130 0.00 0.00 0.00 4.08
395 396 4.143986 TGGTCCATATTAACGTGATGCA 57.856 40.909 0.00 0.00 0.00 3.96
396 397 5.493133 TTTGGTCCATATTAACGTGATGC 57.507 39.130 0.00 0.00 0.00 3.91
397 398 8.187480 TCAAATTTGGTCCATATTAACGTGATG 58.813 33.333 17.90 2.21 0.00 3.07
398 399 8.287439 TCAAATTTGGTCCATATTAACGTGAT 57.713 30.769 17.90 0.00 0.00 3.06
399 400 7.689446 TCAAATTTGGTCCATATTAACGTGA 57.311 32.000 17.90 5.74 0.00 4.35
432 433 9.772973 TGTCTATATTAATGCGGTTGTCTAAAT 57.227 29.630 0.00 0.00 0.00 1.40
433 434 9.256477 CTGTCTATATTAATGCGGTTGTCTAAA 57.744 33.333 0.00 0.00 0.00 1.85
434 435 7.870954 CCTGTCTATATTAATGCGGTTGTCTAA 59.129 37.037 0.00 0.00 0.00 2.10
435 436 7.375834 CCTGTCTATATTAATGCGGTTGTCTA 58.624 38.462 0.00 0.00 0.00 2.59
436 437 6.223852 CCTGTCTATATTAATGCGGTTGTCT 58.776 40.000 0.00 0.00 0.00 3.41
437 438 5.107065 GCCTGTCTATATTAATGCGGTTGTC 60.107 44.000 0.00 0.00 0.00 3.18
438 439 4.755123 GCCTGTCTATATTAATGCGGTTGT 59.245 41.667 0.00 0.00 0.00 3.32
439 440 4.754618 TGCCTGTCTATATTAATGCGGTTG 59.245 41.667 0.00 0.00 0.00 3.77
440 441 4.968259 TGCCTGTCTATATTAATGCGGTT 58.032 39.130 0.00 0.00 0.00 4.44
441 442 4.617253 TGCCTGTCTATATTAATGCGGT 57.383 40.909 0.00 0.00 0.00 5.68
442 443 5.940192 TTTGCCTGTCTATATTAATGCGG 57.060 39.130 0.00 0.00 0.00 5.69
443 444 7.017645 GTGATTTGCCTGTCTATATTAATGCG 58.982 38.462 0.00 0.00 0.00 4.73
444 445 7.175641 AGGTGATTTGCCTGTCTATATTAATGC 59.824 37.037 0.00 0.00 34.56 3.56
445 446 8.627208 AGGTGATTTGCCTGTCTATATTAATG 57.373 34.615 0.00 0.00 34.56 1.90
446 447 9.726438 GTAGGTGATTTGCCTGTCTATATTAAT 57.274 33.333 0.00 0.00 37.54 1.40
447 448 8.710239 TGTAGGTGATTTGCCTGTCTATATTAA 58.290 33.333 0.00 0.00 37.54 1.40
448 449 8.257602 TGTAGGTGATTTGCCTGTCTATATTA 57.742 34.615 0.00 0.00 37.54 0.98
449 450 7.136822 TGTAGGTGATTTGCCTGTCTATATT 57.863 36.000 0.00 0.00 37.54 1.28
450 451 6.747414 TGTAGGTGATTTGCCTGTCTATAT 57.253 37.500 0.00 0.00 37.54 0.86
451 452 6.326323 TCATGTAGGTGATTTGCCTGTCTATA 59.674 38.462 0.00 0.00 37.54 1.31
452 453 5.130975 TCATGTAGGTGATTTGCCTGTCTAT 59.869 40.000 0.00 0.00 37.54 1.98
453 454 4.469586 TCATGTAGGTGATTTGCCTGTCTA 59.530 41.667 0.00 0.00 37.54 2.59
454 455 3.264193 TCATGTAGGTGATTTGCCTGTCT 59.736 43.478 0.00 0.00 37.54 3.41
455 456 3.609853 TCATGTAGGTGATTTGCCTGTC 58.390 45.455 0.00 0.00 37.54 3.51
456 457 3.719268 TCATGTAGGTGATTTGCCTGT 57.281 42.857 0.00 0.00 37.54 4.00
545 546 9.438228 TGACCGTTTGTTGTAATGAGATATAAA 57.562 29.630 0.00 0.00 0.00 1.40
546 547 9.607988 ATGACCGTTTGTTGTAATGAGATATAA 57.392 29.630 0.00 0.00 0.00 0.98
547 548 9.607988 AATGACCGTTTGTTGTAATGAGATATA 57.392 29.630 0.00 0.00 0.00 0.86
548 549 8.397906 CAATGACCGTTTGTTGTAATGAGATAT 58.602 33.333 0.00 0.00 0.00 1.63
549 550 7.389330 ACAATGACCGTTTGTTGTAATGAGATA 59.611 33.333 0.00 0.00 33.64 1.98
550 551 6.206634 ACAATGACCGTTTGTTGTAATGAGAT 59.793 34.615 0.00 0.00 33.64 2.75
551 552 5.529430 ACAATGACCGTTTGTTGTAATGAGA 59.471 36.000 0.00 0.00 33.64 3.27
552 553 5.757886 ACAATGACCGTTTGTTGTAATGAG 58.242 37.500 0.00 0.00 33.64 2.90
553 554 5.759506 ACAATGACCGTTTGTTGTAATGA 57.240 34.783 0.00 0.00 33.64 2.57
554 555 6.205784 AGAACAATGACCGTTTGTTGTAATG 58.794 36.000 6.14 0.00 44.90 1.90
555 556 6.385649 AGAACAATGACCGTTTGTTGTAAT 57.614 33.333 6.14 0.00 44.90 1.89
556 557 5.821516 AGAACAATGACCGTTTGTTGTAA 57.178 34.783 6.14 0.00 44.90 2.41
557 558 6.922247 TTAGAACAATGACCGTTTGTTGTA 57.078 33.333 6.14 4.42 44.90 2.41
558 559 5.821516 TTAGAACAATGACCGTTTGTTGT 57.178 34.783 6.14 5.24 44.90 3.32
559 560 8.789881 TTAATTAGAACAATGACCGTTTGTTG 57.210 30.769 6.14 0.00 44.90 3.33
560 561 9.974980 ATTTAATTAGAACAATGACCGTTTGTT 57.025 25.926 1.72 1.72 46.89 2.83
561 562 9.974980 AATTTAATTAGAACAATGACCGTTTGT 57.025 25.926 0.00 0.00 38.91 2.83
566 567 9.210426 CGAGAAATTTAATTAGAACAATGACCG 57.790 33.333 0.00 0.00 0.00 4.79
567 568 9.010366 GCGAGAAATTTAATTAGAACAATGACC 57.990 33.333 0.00 0.00 0.00 4.02
568 569 9.554724 TGCGAGAAATTTAATTAGAACAATGAC 57.445 29.630 0.00 0.00 0.00 3.06
629 630 3.054728 CAGGGGGTTTGTTCCAAGTTTTT 60.055 43.478 0.00 0.00 0.00 1.94
630 631 2.503765 CAGGGGGTTTGTTCCAAGTTTT 59.496 45.455 0.00 0.00 0.00 2.43
631 632 2.115427 CAGGGGGTTTGTTCCAAGTTT 58.885 47.619 0.00 0.00 0.00 2.66
632 633 1.289530 TCAGGGGGTTTGTTCCAAGTT 59.710 47.619 0.00 0.00 0.00 2.66
633 634 0.930726 TCAGGGGGTTTGTTCCAAGT 59.069 50.000 0.00 0.00 0.00 3.16
634 635 1.895131 CATCAGGGGGTTTGTTCCAAG 59.105 52.381 0.00 0.00 0.00 3.61
635 636 1.501170 TCATCAGGGGGTTTGTTCCAA 59.499 47.619 0.00 0.00 0.00 3.53
636 637 1.153539 TCATCAGGGGGTTTGTTCCA 58.846 50.000 0.00 0.00 0.00 3.53
696 698 2.036089 ACTCTCGAAATATCTTCGGCCC 59.964 50.000 15.30 0.00 41.78 5.80
759 761 2.341257 AGCTTCGCATAGTGTTCAGTG 58.659 47.619 0.00 0.00 0.00 3.66
771 773 3.610040 TTCATTTCTAGGAGCTTCGCA 57.390 42.857 0.00 0.00 0.00 5.10
792 794 2.798283 GTTCGTTCAGTTGATCGTTCCA 59.202 45.455 11.12 0.00 38.15 3.53
797 799 3.318017 AGAAGGTTCGTTCAGTTGATCG 58.682 45.455 6.31 6.31 38.28 3.69
805 807 1.268899 GGACTCGAGAAGGTTCGTTCA 59.731 52.381 21.68 0.00 41.22 3.18
869 871 6.816640 AGTGTTTGCGTGCTATTTATAGAAGA 59.183 34.615 0.97 0.00 32.05 2.87
936 947 0.301687 CGAATGTGTGGATGCGCTAC 59.698 55.000 9.73 1.91 0.00 3.58
1004 1028 1.073897 GCCTTCTTGGACACTGCCT 59.926 57.895 0.00 0.00 38.35 4.75
1481 1505 0.396435 AATCTTGGGCACTGTGACGA 59.604 50.000 12.86 2.24 0.00 4.20
1702 1727 5.645929 ACAACAACAACATCACACTTCAGTA 59.354 36.000 0.00 0.00 0.00 2.74
1703 1728 4.458989 ACAACAACAACATCACACTTCAGT 59.541 37.500 0.00 0.00 0.00 3.41
1704 1729 4.985413 ACAACAACAACATCACACTTCAG 58.015 39.130 0.00 0.00 0.00 3.02
1705 1730 4.457257 TGACAACAACAACATCACACTTCA 59.543 37.500 0.00 0.00 0.00 3.02
1706 1731 4.980590 TGACAACAACAACATCACACTTC 58.019 39.130 0.00 0.00 0.00 3.01
1739 1764 2.097142 ACACGACAGCTCTATCGGTAAC 59.903 50.000 14.22 0.00 42.67 2.50
1756 1783 3.393800 AGATCCAACTGAACAAGACACG 58.606 45.455 0.00 0.00 0.00 4.49
1821 1848 6.633856 AGGCAAACCAGCAATTATTAAGAAG 58.366 36.000 0.00 0.00 39.06 2.85
1850 1877 0.251297 TCGAAACCAGTACGGGGAGA 60.251 55.000 16.82 6.91 40.22 3.71
1906 1943 3.307762 GCCTTGTAAACTGAGATGGAGGT 60.308 47.826 0.00 0.00 0.00 3.85
1907 1944 3.054802 AGCCTTGTAAACTGAGATGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
1916 1953 1.956477 AGGTGCAAGCCTTGTAAACTG 59.044 47.619 6.28 0.00 34.71 3.16
1929 1966 3.508402 TGACGACTTAGATACAGGTGCAA 59.492 43.478 0.00 0.00 0.00 4.08
1930 1967 3.086282 TGACGACTTAGATACAGGTGCA 58.914 45.455 0.00 0.00 0.00 4.57
1931 1968 3.777465 TGACGACTTAGATACAGGTGC 57.223 47.619 0.00 0.00 0.00 5.01
1932 1969 8.592998 GTTAAATTGACGACTTAGATACAGGTG 58.407 37.037 0.00 0.00 0.00 4.00
1947 1984 7.566868 GCAAGCCTTGTAAAAGTTAAATTGACG 60.567 37.037 6.28 0.00 0.00 4.35
1948 1985 7.223777 TGCAAGCCTTGTAAAAGTTAAATTGAC 59.776 33.333 6.28 0.00 0.00 3.18
1949 1986 7.223777 GTGCAAGCCTTGTAAAAGTTAAATTGA 59.776 33.333 6.28 0.00 0.00 2.57
1950 1987 7.344441 GTGCAAGCCTTGTAAAAGTTAAATTG 58.656 34.615 6.28 0.00 0.00 2.32
1951 1988 6.481976 GGTGCAAGCCTTGTAAAAGTTAAATT 59.518 34.615 6.28 0.00 0.00 1.82
1952 1989 5.989168 GGTGCAAGCCTTGTAAAAGTTAAAT 59.011 36.000 6.28 0.00 0.00 1.40
1953 1990 5.128008 AGGTGCAAGCCTTGTAAAAGTTAAA 59.872 36.000 6.28 0.00 34.71 1.52
1954 1991 4.647399 AGGTGCAAGCCTTGTAAAAGTTAA 59.353 37.500 6.28 0.00 34.71 2.01
1955 1992 4.037446 CAGGTGCAAGCCTTGTAAAAGTTA 59.963 41.667 6.28 0.00 36.58 2.24
1956 1993 3.031013 AGGTGCAAGCCTTGTAAAAGTT 58.969 40.909 6.28 0.00 34.71 2.66
1957 1994 2.362077 CAGGTGCAAGCCTTGTAAAAGT 59.638 45.455 6.28 0.00 36.58 2.66
1958 1995 2.863704 GCAGGTGCAAGCCTTGTAAAAG 60.864 50.000 6.28 0.00 41.59 2.27
1959 1996 1.068434 GCAGGTGCAAGCCTTGTAAAA 59.932 47.619 6.28 0.00 41.59 1.52
1960 1997 0.673437 GCAGGTGCAAGCCTTGTAAA 59.327 50.000 6.28 0.00 41.59 2.01
1961 1998 2.340427 GCAGGTGCAAGCCTTGTAA 58.660 52.632 6.28 0.00 41.59 2.41
1962 1999 4.079446 GCAGGTGCAAGCCTTGTA 57.921 55.556 6.28 0.00 41.59 2.41
1972 2009 1.281899 GACGACTTAGATGCAGGTGC 58.718 55.000 0.00 0.00 42.50 5.01
1973 2010 2.654749 TGACGACTTAGATGCAGGTG 57.345 50.000 0.00 0.00 0.00 4.00
1974 2011 3.895232 ATTGACGACTTAGATGCAGGT 57.105 42.857 0.00 0.00 0.00 4.00
1975 2012 6.313905 AGTTAAATTGACGACTTAGATGCAGG 59.686 38.462 0.00 0.00 0.00 4.85
1976 2013 7.295952 AGTTAAATTGACGACTTAGATGCAG 57.704 36.000 0.00 0.00 0.00 4.41
1977 2014 7.667043 AAGTTAAATTGACGACTTAGATGCA 57.333 32.000 0.00 0.00 31.05 3.96
2111 2154 6.149474 ACAAGTTTTGCACATGTATCTAGGTC 59.851 38.462 0.00 0.00 35.51 3.85
2114 2157 9.329913 GTTTACAAGTTTTGCACATGTATCTAG 57.670 33.333 0.00 0.00 38.91 2.43
2123 2166 3.923461 GCACAGTTTACAAGTTTTGCACA 59.077 39.130 0.00 0.00 0.00 4.57
2130 2173 6.220201 ACAAGTTTTGCACAGTTTACAAGTT 58.780 32.000 0.00 0.00 0.00 2.66
2131 2174 5.778862 ACAAGTTTTGCACAGTTTACAAGT 58.221 33.333 0.00 0.00 0.00 3.16
2132 2175 7.804614 TTACAAGTTTTGCACAGTTTACAAG 57.195 32.000 0.00 0.00 0.00 3.16
2133 2176 7.868415 AGTTTACAAGTTTTGCACAGTTTACAA 59.132 29.630 0.00 0.00 0.00 2.41
2134 2177 7.327275 CAGTTTACAAGTTTTGCACAGTTTACA 59.673 33.333 0.00 0.00 0.00 2.41
2135 2178 7.539366 TCAGTTTACAAGTTTTGCACAGTTTAC 59.461 33.333 0.00 0.00 0.00 2.01
2136 2179 7.594714 TCAGTTTACAAGTTTTGCACAGTTTA 58.405 30.769 0.00 0.00 0.00 2.01
2137 2180 6.451393 TCAGTTTACAAGTTTTGCACAGTTT 58.549 32.000 0.00 0.00 0.00 2.66
2138 2181 6.019779 TCAGTTTACAAGTTTTGCACAGTT 57.980 33.333 0.00 0.00 0.00 3.16
2139 2182 5.414454 TCTCAGTTTACAAGTTTTGCACAGT 59.586 36.000 0.00 0.00 0.00 3.55
2140 2183 5.879237 TCTCAGTTTACAAGTTTTGCACAG 58.121 37.500 0.00 0.00 0.00 3.66
2141 2184 5.888691 TCTCAGTTTACAAGTTTTGCACA 57.111 34.783 0.00 0.00 0.00 4.57
2142 2185 7.861630 TCTATCTCAGTTTACAAGTTTTGCAC 58.138 34.615 0.00 0.00 0.00 4.57
2143 2186 7.173218 CCTCTATCTCAGTTTACAAGTTTTGCA 59.827 37.037 0.00 0.00 0.00 4.08
2144 2187 7.361286 CCCTCTATCTCAGTTTACAAGTTTTGC 60.361 40.741 0.00 0.00 0.00 3.68
2145 2188 7.878127 TCCCTCTATCTCAGTTTACAAGTTTTG 59.122 37.037 0.00 0.00 0.00 2.44
2146 2189 7.974504 TCCCTCTATCTCAGTTTACAAGTTTT 58.025 34.615 0.00 0.00 0.00 2.43
2147 2190 7.235812 ACTCCCTCTATCTCAGTTTACAAGTTT 59.764 37.037 0.00 0.00 0.00 2.66
2148 2191 6.726764 ACTCCCTCTATCTCAGTTTACAAGTT 59.273 38.462 0.00 0.00 0.00 2.66
2169 2212 4.386954 CGACCGTAAAGAAAAAGGTACTCC 59.613 45.833 0.00 0.00 38.49 3.85
2177 2220 4.753107 AGATGCTTCGACCGTAAAGAAAAA 59.247 37.500 0.00 0.00 0.00 1.94
2186 2229 2.736144 TTGTAAGATGCTTCGACCGT 57.264 45.000 0.00 0.00 0.00 4.83
2190 2233 5.079689 TGGTGTATTGTAAGATGCTTCGA 57.920 39.130 0.00 0.00 0.00 3.71
2209 2252 6.969993 TTGTTAGATGCCTTTTTAGTTGGT 57.030 33.333 0.00 0.00 0.00 3.67
2220 2263 9.023962 TGAAAAGTTATGAATTGTTAGATGCCT 57.976 29.630 0.00 0.00 0.00 4.75
2221 2264 9.807649 ATGAAAAGTTATGAATTGTTAGATGCC 57.192 29.630 0.00 0.00 0.00 4.40
2289 2345 1.924524 CCATACAACAGTTCCTACGCG 59.075 52.381 3.53 3.53 0.00 6.01
2295 2351 5.507315 CCTTGAACAACCATACAACAGTTCC 60.507 44.000 0.00 0.00 35.68 3.62
2331 2387 9.710900 AGCCCTAACATTTTCAGAATTTTTAAG 57.289 29.630 0.00 0.00 0.00 1.85
2362 2418 3.684305 TGTGTCCGATTTGCTGAATAGTG 59.316 43.478 0.00 0.00 0.00 2.74
2363 2419 3.684788 GTGTGTCCGATTTGCTGAATAGT 59.315 43.478 0.00 0.00 0.00 2.12
2364 2420 3.684305 TGTGTGTCCGATTTGCTGAATAG 59.316 43.478 0.00 0.00 0.00 1.73
2365 2421 3.669536 TGTGTGTCCGATTTGCTGAATA 58.330 40.909 0.00 0.00 0.00 1.75
2366 2422 2.503331 TGTGTGTCCGATTTGCTGAAT 58.497 42.857 0.00 0.00 0.00 2.57
2401 2551 9.705290 GAAGCCCTAACATTTTCAGAATTTTTA 57.295 29.630 0.00 0.00 0.00 1.52
2402 2552 8.210265 TGAAGCCCTAACATTTTCAGAATTTTT 58.790 29.630 0.00 0.00 0.00 1.94
2404 2554 7.301868 TGAAGCCCTAACATTTTCAGAATTT 57.698 32.000 0.00 0.00 0.00 1.82
2409 2559 5.393461 GGTGATGAAGCCCTAACATTTTCAG 60.393 44.000 0.00 0.00 32.00 3.02
2425 2575 3.305267 CCAATTTGCTGAACGGTGATGAA 60.305 43.478 0.00 0.00 0.00 2.57
2426 2576 2.228582 CCAATTTGCTGAACGGTGATGA 59.771 45.455 0.00 0.00 0.00 2.92
2428 2578 2.228822 GTCCAATTTGCTGAACGGTGAT 59.771 45.455 0.00 0.00 0.00 3.06
2430 2580 1.336440 TGTCCAATTTGCTGAACGGTG 59.664 47.619 0.00 0.00 0.00 4.94
2432 2582 1.336440 TGTGTCCAATTTGCTGAACGG 59.664 47.619 0.00 0.00 0.00 4.44
2434 2584 2.384382 CGTGTGTCCAATTTGCTGAAC 58.616 47.619 0.00 0.00 0.00 3.18
2436 2586 0.950836 CCGTGTGTCCAATTTGCTGA 59.049 50.000 0.00 0.00 0.00 4.26
2437 2587 0.039256 CCCGTGTGTCCAATTTGCTG 60.039 55.000 0.00 0.00 0.00 4.41
2438 2588 1.178534 CCCCGTGTGTCCAATTTGCT 61.179 55.000 0.00 0.00 0.00 3.91
2439 2589 1.175983 TCCCCGTGTGTCCAATTTGC 61.176 55.000 0.00 0.00 0.00 3.68
2440 2590 0.881118 CTCCCCGTGTGTCCAATTTG 59.119 55.000 0.00 0.00 0.00 2.32
2441 2591 0.251165 CCTCCCCGTGTGTCCAATTT 60.251 55.000 0.00 0.00 0.00 1.82
2443 2593 2.602676 CCCTCCCCGTGTGTCCAAT 61.603 63.158 0.00 0.00 0.00 3.16
2444 2594 3.246112 CCCTCCCCGTGTGTCCAA 61.246 66.667 0.00 0.00 0.00 3.53
2445 2595 4.242586 TCCCTCCCCGTGTGTCCA 62.243 66.667 0.00 0.00 0.00 4.02
2446 2596 3.391382 CTCCCTCCCCGTGTGTCC 61.391 72.222 0.00 0.00 0.00 4.02
2447 2597 4.083862 GCTCCCTCCCCGTGTGTC 62.084 72.222 0.00 0.00 0.00 3.67
2452 2602 3.292481 TTAGACGCTCCCTCCCCGT 62.292 63.158 0.00 0.00 37.99 5.28
2453 2603 2.441532 TTAGACGCTCCCTCCCCG 60.442 66.667 0.00 0.00 0.00 5.73
2454 2604 1.684734 TGTTAGACGCTCCCTCCCC 60.685 63.158 0.00 0.00 0.00 4.81
2455 2605 1.255667 TGTGTTAGACGCTCCCTCCC 61.256 60.000 0.00 0.00 0.00 4.30
2456 2606 0.606604 TTGTGTTAGACGCTCCCTCC 59.393 55.000 0.00 0.00 0.00 4.30
2457 2607 2.450609 TTTGTGTTAGACGCTCCCTC 57.549 50.000 0.00 0.00 0.00 4.30
2458 2608 2.158871 TGTTTTGTGTTAGACGCTCCCT 60.159 45.455 0.00 0.00 0.00 4.20
2465 2631 6.664515 TCATTCGGAATGTTTTGTGTTAGAC 58.335 36.000 25.40 0.00 39.87 2.59
2548 3057 5.343058 GGTTTAGTTTAAATTTCGTTCGGCC 59.657 40.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.