Multiple sequence alignment - TraesCS4B01G089700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G089700 chr4B 100.000 3194 0 0 1 3194 90894180 90890987 0.000000e+00 5899.0
1 TraesCS4B01G089700 chr4D 91.231 3216 109 54 19 3194 61850516 61853598 0.000000e+00 4217.0
2 TraesCS4B01G089700 chr4A 90.813 3026 125 50 253 3194 535034088 535037044 0.000000e+00 3906.0
3 TraesCS4B01G089700 chr4A 91.000 200 2 7 19 208 535033894 535034087 4.090000e-64 255.0
4 TraesCS4B01G089700 chr5A 81.538 195 36 0 1832 2026 459775650 459775456 9.170000e-36 161.0
5 TraesCS4B01G089700 chr5A 79.444 180 27 9 1834 2008 443289630 443289804 5.600000e-23 119.0
6 TraesCS4B01G089700 chr5A 87.500 80 8 2 1348 1426 443289054 443289132 1.220000e-14 91.6
7 TraesCS4B01G089700 chr5B 80.447 179 27 7 1834 2008 401667836 401668010 2.590000e-26 130.0
8 TraesCS4B01G089700 chr5B 86.076 79 9 2 1348 1425 401667251 401667328 2.040000e-12 84.2
9 TraesCS4B01G089700 chr5D 79.888 179 28 7 1834 2008 342175361 342175535 1.200000e-24 124.0
10 TraesCS4B01G089700 chr5D 86.076 79 9 2 1348 1425 342174785 342174862 2.040000e-12 84.2
11 TraesCS4B01G089700 chr1B 76.744 172 40 0 1834 2005 667750250 667750421 2.620000e-16 97.1
12 TraesCS4B01G089700 chr1D 76.163 172 41 0 1834 2005 479540798 479540969 1.220000e-14 91.6
13 TraesCS4B01G089700 chr1A 75.581 172 42 0 1834 2005 575808298 575808469 5.680000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G089700 chr4B 90890987 90894180 3193 True 5899.0 5899 100.0000 1 3194 1 chr4B.!!$R1 3193
1 TraesCS4B01G089700 chr4D 61850516 61853598 3082 False 4217.0 4217 91.2310 19 3194 1 chr4D.!!$F1 3175
2 TraesCS4B01G089700 chr4A 535033894 535037044 3150 False 2080.5 3906 90.9065 19 3194 2 chr4A.!!$F1 3175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 866 0.313043 CTTGGAGCTTGCAAGTGGTG 59.687 55.0 26.55 9.55 40.36 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 2623 0.250513 CCAAGGAGACGAAGAAGGGG 59.749 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.921834 GCCTAGTCACCTCAGTGC 57.078 61.111 0.00 0.00 44.16 4.40
159 171 1.010793 TCCCCTCCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
160 172 1.421646 CCCCTCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
246 263 5.559770 TCTCCATCACACACATAAACACAT 58.440 37.500 0.00 0.00 0.00 3.21
281 298 1.764454 GGAAGCTCCTCCTCCTCCC 60.764 68.421 0.00 0.00 32.53 4.30
284 301 3.773154 GCTCCTCCTCCTCCCCCT 61.773 72.222 0.00 0.00 0.00 4.79
328 348 1.674057 GTGGTGTGTGGGAGAGGAG 59.326 63.158 0.00 0.00 0.00 3.69
384 406 5.300752 GTCCATACATTAGTCCATCCACAG 58.699 45.833 0.00 0.00 0.00 3.66
386 408 5.305386 TCCATACATTAGTCCATCCACAGAG 59.695 44.000 0.00 0.00 0.00 3.35
421 459 2.393768 GCAGCTCGCTTGCTTGCTA 61.394 57.895 8.36 0.00 41.98 3.49
425 464 0.926846 GCTCGCTTGCTTGCTACTAG 59.073 55.000 0.00 0.00 0.00 2.57
443 482 4.954875 ACTAGTACTAGTAGTAGCGGTGG 58.045 47.826 31.69 16.75 43.98 4.61
444 483 2.570135 AGTACTAGTAGTAGCGGTGGC 58.430 52.381 10.38 0.00 40.37 5.01
445 484 1.262683 GTACTAGTAGTAGCGGTGGCG 59.737 57.143 10.38 0.00 46.35 5.69
446 485 1.099879 ACTAGTAGTAGCGGTGGCGG 61.100 60.000 0.00 0.00 46.35 6.13
447 486 1.077501 TAGTAGTAGCGGTGGCGGT 60.078 57.895 0.00 0.00 46.35 5.68
448 487 1.378882 TAGTAGTAGCGGTGGCGGTG 61.379 60.000 0.00 0.00 46.35 4.94
449 488 2.677524 TAGTAGCGGTGGCGGTGT 60.678 61.111 0.00 0.00 46.35 4.16
450 489 1.378382 TAGTAGCGGTGGCGGTGTA 60.378 57.895 0.00 0.00 46.35 2.90
451 490 1.656818 TAGTAGCGGTGGCGGTGTAC 61.657 60.000 0.00 0.00 46.35 2.90
477 516 6.331061 AGTAACTAGTAAAACTCGCATCCAG 58.669 40.000 0.00 0.00 0.00 3.86
584 652 1.066303 GCGAGTGAGTACAGCAGCTAT 59.934 52.381 0.00 0.00 34.35 2.97
793 866 0.313043 CTTGGAGCTTGCAAGTGGTG 59.687 55.000 26.55 9.55 40.36 4.17
851 924 2.563798 CCACACCACACCATGCACC 61.564 63.158 0.00 0.00 0.00 5.01
852 925 1.529010 CACACCACACCATGCACCT 60.529 57.895 0.00 0.00 0.00 4.00
854 927 1.073722 CACCACACCATGCACCTCT 59.926 57.895 0.00 0.00 0.00 3.69
856 929 1.130054 ACCACACCATGCACCTCTCT 61.130 55.000 0.00 0.00 0.00 3.10
897 970 2.628178 CCTTCCTTTTTGTTCTCCACCC 59.372 50.000 0.00 0.00 0.00 4.61
990 1067 0.322648 GCCATTGGCCTTTTCTTGCT 59.677 50.000 17.28 0.00 44.06 3.91
991 1068 1.673923 GCCATTGGCCTTTTCTTGCTC 60.674 52.381 17.28 0.00 44.06 4.26
992 1069 1.897802 CCATTGGCCTTTTCTTGCTCT 59.102 47.619 3.32 0.00 0.00 4.09
1040 1117 1.074752 CAGAGAAGGCGAACAGAAGC 58.925 55.000 0.00 0.00 0.00 3.86
1041 1118 0.681733 AGAGAAGGCGAACAGAAGCA 59.318 50.000 0.00 0.00 34.54 3.91
1042 1119 1.074752 GAGAAGGCGAACAGAAGCAG 58.925 55.000 0.00 0.00 34.54 4.24
1043 1120 0.952984 AGAAGGCGAACAGAAGCAGC 60.953 55.000 0.00 0.00 34.54 5.25
1044 1121 1.227943 AAGGCGAACAGAAGCAGCA 60.228 52.632 0.00 0.00 34.54 4.41
1045 1122 1.233285 AAGGCGAACAGAAGCAGCAG 61.233 55.000 0.00 0.00 34.54 4.24
1046 1123 2.175322 GCGAACAGAAGCAGCAGC 59.825 61.111 0.00 0.00 42.56 5.25
1257 1355 3.790437 CAGTCCCAGGCGCAGGAT 61.790 66.667 18.56 4.96 33.88 3.24
1491 1589 4.110319 TGCCACCGCAATTTCCAT 57.890 50.000 0.00 0.00 43.74 3.41
1551 1655 4.564116 CACGGCTACGGCTACGGG 62.564 72.222 0.00 0.00 46.48 5.28
1719 1823 0.534427 ACCAGATCATCATGCCGCTG 60.534 55.000 0.00 0.00 0.00 5.18
1890 2000 2.816958 CGCATGCTGGAGTTCGCT 60.817 61.111 17.13 0.00 0.00 4.93
1920 2030 3.471620 TGGCGTCTCCAGAAGCTT 58.528 55.556 13.22 0.00 46.34 3.74
1944 2054 2.922950 CGCCATGGTGCAGCACTTT 61.923 57.895 22.79 10.01 34.40 2.66
2015 2125 1.724582 AACAAGCACAACCTCGCCAC 61.725 55.000 0.00 0.00 0.00 5.01
2016 2126 2.972505 AAGCACAACCTCGCCACG 60.973 61.111 0.00 0.00 0.00 4.94
2207 2317 1.865865 GACTGACGGCACAAAGAAGA 58.134 50.000 0.00 0.00 0.00 2.87
2208 2318 2.417719 GACTGACGGCACAAAGAAGAT 58.582 47.619 0.00 0.00 0.00 2.40
2209 2319 2.146342 ACTGACGGCACAAAGAAGATG 58.854 47.619 0.00 0.00 0.00 2.90
2210 2320 2.224281 ACTGACGGCACAAAGAAGATGA 60.224 45.455 0.00 0.00 0.00 2.92
2211 2321 2.807967 CTGACGGCACAAAGAAGATGAA 59.192 45.455 0.00 0.00 0.00 2.57
2212 2322 3.210227 TGACGGCACAAAGAAGATGAAA 58.790 40.909 0.00 0.00 0.00 2.69
2213 2323 3.820467 TGACGGCACAAAGAAGATGAAAT 59.180 39.130 0.00 0.00 0.00 2.17
2214 2324 4.278170 TGACGGCACAAAGAAGATGAAATT 59.722 37.500 0.00 0.00 0.00 1.82
2215 2325 5.471797 TGACGGCACAAAGAAGATGAAATTA 59.528 36.000 0.00 0.00 0.00 1.40
2216 2326 6.016693 TGACGGCACAAAGAAGATGAAATTAA 60.017 34.615 0.00 0.00 0.00 1.40
2223 2333 5.921962 AAGAAGATGAAATTAACCCTGGC 57.078 39.130 0.00 0.00 0.00 4.85
2229 2339 1.132453 GAAATTAACCCTGGCGTCTGC 59.868 52.381 0.00 0.00 41.71 4.26
2370 2484 5.380900 ACTCGAGTCTATCATCATCTCCAA 58.619 41.667 13.58 0.00 0.00 3.53
2446 2561 2.428925 GGGGACATAGGCGAACCGA 61.429 63.158 0.00 0.00 42.76 4.69
2600 2715 5.021033 AGTTGTCATGGATCAGATCAGAC 57.979 43.478 12.66 15.27 0.00 3.51
2602 2718 4.667519 TGTCATGGATCAGATCAGACAG 57.332 45.455 20.26 5.36 34.48 3.51
2619 2735 4.391216 CAGACAGCAGAGGTTGTATGAAAG 59.609 45.833 0.88 0.00 46.38 2.62
2677 2794 1.017387 GTTTCCTGGGCTAATCTGCG 58.983 55.000 0.00 0.00 0.00 5.18
2689 2806 3.684788 GCTAATCTGCGGAGTCTGAAAAA 59.315 43.478 0.00 0.00 0.00 1.94
2819 2936 2.828256 TTACTGTGGCCTGCCTGCA 61.828 57.895 9.97 7.65 36.94 4.41
2855 2976 1.898472 CTATGCCTGATCTGATCCGGT 59.102 52.381 23.55 11.57 36.20 5.28
2889 3010 2.016318 CACTCACAAGCCACAAAGACA 58.984 47.619 0.00 0.00 0.00 3.41
2892 3013 3.067180 ACTCACAAGCCACAAAGACAATG 59.933 43.478 0.00 0.00 0.00 2.82
2893 3014 3.286353 TCACAAGCCACAAAGACAATGA 58.714 40.909 0.00 0.00 0.00 2.57
2895 3016 4.159321 TCACAAGCCACAAAGACAATGAAA 59.841 37.500 0.00 0.00 0.00 2.69
2897 3018 5.005971 CACAAGCCACAAAGACAATGAAAAG 59.994 40.000 0.00 0.00 0.00 2.27
2932 3059 1.019278 TGTCAAGAATTCGGGAGCGC 61.019 55.000 0.00 0.00 0.00 5.92
2960 3087 0.551879 TGGAACGGGAGGGTGAAAAA 59.448 50.000 0.00 0.00 0.00 1.94
2971 3098 6.539173 GGGAGGGTGAAAAATAAAATTTGGT 58.461 36.000 0.00 0.00 0.00 3.67
3163 3300 2.290260 ACAGAGATGGAAACCATGCGAA 60.290 45.455 8.06 0.00 45.26 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108424 CTGCACTGAGGTGACTAGGC 60.108 60.000 0.00 0.00 45.61 3.93
1 2 0.108424 GCTGCACTGAGGTGACTAGG 60.108 60.000 0.00 0.00 45.61 3.02
2 3 0.457509 CGCTGCACTGAGGTGACTAG 60.458 60.000 0.00 0.00 45.61 2.57
3 4 1.586541 CGCTGCACTGAGGTGACTA 59.413 57.895 0.00 0.00 45.61 2.59
4 5 2.341543 CGCTGCACTGAGGTGACT 59.658 61.111 0.00 0.00 45.61 3.41
5 6 3.418068 GCGCTGCACTGAGGTGAC 61.418 66.667 0.00 0.00 45.61 3.67
6 7 2.736579 ATTGCGCTGCACTGAGGTGA 62.737 55.000 9.73 0.00 45.61 4.02
7 8 2.330372 ATTGCGCTGCACTGAGGTG 61.330 57.895 9.73 0.00 45.53 4.00
8 9 2.033141 ATTGCGCTGCACTGAGGT 59.967 55.556 9.73 0.00 38.71 3.85
9 10 2.483745 CATTGCGCTGCACTGAGG 59.516 61.111 9.73 0.00 40.81 3.86
10 11 2.330372 ACCATTGCGCTGCACTGAG 61.330 57.895 9.73 12.01 40.81 3.35
11 12 2.281692 ACCATTGCGCTGCACTGA 60.282 55.556 9.73 0.53 40.81 3.41
12 13 2.126618 CACCATTGCGCTGCACTG 60.127 61.111 9.73 11.82 38.71 3.66
13 14 3.367743 CCACCATTGCGCTGCACT 61.368 61.111 9.73 0.00 38.71 4.40
14 15 2.807631 CTTCCACCATTGCGCTGCAC 62.808 60.000 9.73 0.00 38.71 4.57
15 16 2.596923 TTCCACCATTGCGCTGCA 60.597 55.556 9.73 0.00 36.47 4.41
16 17 2.180017 CTTCCACCATTGCGCTGC 59.820 61.111 9.73 0.00 0.00 5.25
17 18 2.180017 GCTTCCACCATTGCGCTG 59.820 61.111 9.73 0.00 0.00 5.18
147 159 2.293519 TGGAGGAGGAGAGAGAGAGAGA 60.294 54.545 0.00 0.00 0.00 3.10
159 171 0.687354 GCTTGAACAGTGGAGGAGGA 59.313 55.000 0.00 0.00 0.00 3.71
160 172 0.397941 TGCTTGAACAGTGGAGGAGG 59.602 55.000 0.00 0.00 0.00 4.30
181 196 0.469494 TCTTCTTGTCCTGCACTGCA 59.531 50.000 3.11 3.11 36.92 4.41
227 244 8.453320 AGATGTTATGTGTTTATGTGTGTGATG 58.547 33.333 0.00 0.00 0.00 3.07
246 263 4.225942 AGCTTCCTTCATGGACAGATGTTA 59.774 41.667 0.00 0.00 46.14 2.41
425 464 1.262683 CGCCACCGCTACTACTAGTAC 59.737 57.143 0.00 0.00 0.00 2.73
434 473 1.656818 TAGTACACCGCCACCGCTAC 61.657 60.000 0.00 0.00 0.00 3.58
438 477 0.810648 TTACTAGTACACCGCCACCG 59.189 55.000 0.91 0.00 0.00 4.94
439 478 1.821136 AGTTACTAGTACACCGCCACC 59.179 52.381 0.91 0.00 0.00 4.61
440 479 3.691609 ACTAGTTACTAGTACACCGCCAC 59.308 47.826 21.95 0.00 44.35 5.01
441 480 3.955471 ACTAGTTACTAGTACACCGCCA 58.045 45.455 21.95 0.00 44.35 5.69
442 481 6.436843 TTTACTAGTTACTAGTACACCGCC 57.563 41.667 26.27 0.00 45.56 6.13
443 482 7.530863 AGTTTTACTAGTTACTAGTACACCGC 58.469 38.462 26.27 16.38 45.56 5.68
444 483 7.900352 CGAGTTTTACTAGTTACTAGTACACCG 59.100 40.741 26.27 22.90 45.56 4.94
445 484 7.694367 GCGAGTTTTACTAGTTACTAGTACACC 59.306 40.741 26.27 15.81 45.56 4.16
446 485 8.230486 TGCGAGTTTTACTAGTTACTAGTACAC 58.770 37.037 26.27 23.73 45.56 2.90
447 486 8.322906 TGCGAGTTTTACTAGTTACTAGTACA 57.677 34.615 26.27 19.53 45.56 2.90
448 487 9.432077 GATGCGAGTTTTACTAGTTACTAGTAC 57.568 37.037 26.27 19.48 45.56 2.73
449 488 8.616076 GGATGCGAGTTTTACTAGTTACTAGTA 58.384 37.037 23.65 23.65 44.35 1.82
451 490 7.478322 TGGATGCGAGTTTTACTAGTTACTAG 58.522 38.462 16.96 16.96 39.72 2.57
483 527 1.349067 AAGCGAGTGAGGGGTTACTT 58.651 50.000 0.00 0.00 0.00 2.24
584 652 3.456277 GGGGAGAAGCTTTAGAAGATGGA 59.544 47.826 0.00 0.00 0.00 3.41
731 804 5.994054 AGCTGCTCAATTACACCATACATAG 59.006 40.000 0.00 0.00 0.00 2.23
793 866 5.164954 CCTTATCAAGAAGATACTAGCGGC 58.835 45.833 0.00 0.00 38.90 6.53
794 867 6.334102 ACCTTATCAAGAAGATACTAGCGG 57.666 41.667 0.00 0.00 38.90 5.52
795 868 6.383415 GGACCTTATCAAGAAGATACTAGCG 58.617 44.000 0.00 0.00 38.90 4.26
796 869 6.693466 GGGACCTTATCAAGAAGATACTAGC 58.307 44.000 0.00 0.00 38.90 3.42
851 924 4.743057 TGTGAGAGAGAGAGAGAGAGAG 57.257 50.000 0.00 0.00 0.00 3.20
852 925 4.716287 TGATGTGAGAGAGAGAGAGAGAGA 59.284 45.833 0.00 0.00 0.00 3.10
854 927 4.384098 GGTGATGTGAGAGAGAGAGAGAGA 60.384 50.000 0.00 0.00 0.00 3.10
856 929 3.523157 AGGTGATGTGAGAGAGAGAGAGA 59.477 47.826 0.00 0.00 0.00 3.10
897 970 7.717436 ACACTAAAGAAAAGAAAAGAGAGAGGG 59.283 37.037 0.00 0.00 0.00 4.30
990 1067 2.907458 TGGACACCATGAGAGAGAGA 57.093 50.000 0.00 0.00 0.00 3.10
991 1068 3.197333 ACAATGGACACCATGAGAGAGAG 59.803 47.826 3.97 0.00 44.40 3.20
992 1069 3.055602 CACAATGGACACCATGAGAGAGA 60.056 47.826 3.97 0.00 44.40 3.10
1043 1120 3.420606 CTGGTGCTGCTGACGCTG 61.421 66.667 0.00 0.00 38.05 5.18
1047 1124 3.117171 CTCGCTGGTGCTGCTGAC 61.117 66.667 0.00 0.00 36.97 3.51
1048 1125 2.776670 CTTCTCGCTGGTGCTGCTGA 62.777 60.000 0.00 0.00 36.97 4.26
1056 1148 0.107945 GAAGGATGCTTCTCGCTGGT 60.108 55.000 18.82 0.00 40.11 4.00
1057 1149 0.813210 GGAAGGATGCTTCTCGCTGG 60.813 60.000 24.03 0.00 40.11 4.85
1203 1301 2.436646 GCGTGGTCATGGTGGAGG 60.437 66.667 0.00 0.00 0.00 4.30
1629 1733 2.044650 TAGGCGCCGTAGTGGTCT 60.045 61.111 23.20 1.83 41.21 3.85
1719 1823 1.134367 TCGGACGTCTGGATCATGTTC 59.866 52.381 23.78 0.00 0.00 3.18
1773 1877 3.274586 CTGCCGTCGCCCATGATG 61.275 66.667 0.00 0.00 0.00 3.07
1890 2000 4.308458 CGCCACCCCACGTTCTCA 62.308 66.667 0.00 0.00 0.00 3.27
1920 2030 4.306967 TGCACCATGGCGTCGTCA 62.307 61.111 13.04 0.14 36.28 4.35
2016 2126 3.164977 GAGGTAGGGGGCTGCCTC 61.165 72.222 19.68 15.69 46.04 4.70
2021 2131 3.436028 TAGGCGAGGTAGGGGGCT 61.436 66.667 0.00 0.00 40.02 5.19
2207 2317 3.016736 CAGACGCCAGGGTTAATTTCAT 58.983 45.455 0.00 0.00 0.00 2.57
2208 2318 2.432444 CAGACGCCAGGGTTAATTTCA 58.568 47.619 0.00 0.00 0.00 2.69
2209 2319 1.132453 GCAGACGCCAGGGTTAATTTC 59.868 52.381 0.00 0.00 0.00 2.17
2210 2320 1.173913 GCAGACGCCAGGGTTAATTT 58.826 50.000 0.00 0.00 0.00 1.82
2211 2321 2.868253 GCAGACGCCAGGGTTAATT 58.132 52.632 0.00 0.00 0.00 1.40
2212 2322 4.637771 GCAGACGCCAGGGTTAAT 57.362 55.556 0.00 0.00 0.00 1.40
2229 2339 4.418401 CAACCATGGCGCCGTTGG 62.418 66.667 34.60 34.60 34.55 3.77
2349 2463 6.907853 AATTGGAGATGATGATAGACTCGA 57.092 37.500 0.00 0.00 0.00 4.04
2385 2500 7.502226 CCCAACCTTATGATAAGATAAACAGCA 59.498 37.037 13.56 0.00 0.00 4.41
2398 2513 2.687914 GCTTGCTCCCCAACCTTATGAT 60.688 50.000 0.00 0.00 0.00 2.45
2497 2612 3.646637 ACGAAGAAGGGGAAGAAGAAGAA 59.353 43.478 0.00 0.00 0.00 2.52
2499 2614 3.259625 AGACGAAGAAGGGGAAGAAGAAG 59.740 47.826 0.00 0.00 0.00 2.85
2500 2615 3.240302 AGACGAAGAAGGGGAAGAAGAA 58.760 45.455 0.00 0.00 0.00 2.52
2501 2616 2.826725 GAGACGAAGAAGGGGAAGAAGA 59.173 50.000 0.00 0.00 0.00 2.87
2502 2617 2.093921 GGAGACGAAGAAGGGGAAGAAG 60.094 54.545 0.00 0.00 0.00 2.85
2503 2618 1.900486 GGAGACGAAGAAGGGGAAGAA 59.100 52.381 0.00 0.00 0.00 2.52
2504 2619 1.077334 AGGAGACGAAGAAGGGGAAGA 59.923 52.381 0.00 0.00 0.00 2.87
2505 2620 1.562783 AGGAGACGAAGAAGGGGAAG 58.437 55.000 0.00 0.00 0.00 3.46
2506 2621 1.623811 CAAGGAGACGAAGAAGGGGAA 59.376 52.381 0.00 0.00 0.00 3.97
2507 2622 1.267121 CAAGGAGACGAAGAAGGGGA 58.733 55.000 0.00 0.00 0.00 4.81
2508 2623 0.250513 CCAAGGAGACGAAGAAGGGG 59.749 60.000 0.00 0.00 0.00 4.79
2509 2624 0.977395 ACCAAGGAGACGAAGAAGGG 59.023 55.000 0.00 0.00 0.00 3.95
2510 2625 2.417719 CAACCAAGGAGACGAAGAAGG 58.582 52.381 0.00 0.00 0.00 3.46
2600 2715 6.992063 ATTACTTTCATACAACCTCTGCTG 57.008 37.500 0.00 0.00 0.00 4.41
2602 2718 7.334421 TCAGAATTACTTTCATACAACCTCTGC 59.666 37.037 0.00 0.00 36.75 4.26
2689 2806 2.842496 TGCATCCCATGTTCTCTCTCTT 59.158 45.455 0.00 0.00 0.00 2.85
2691 2808 2.996249 TGCATCCCATGTTCTCTCTC 57.004 50.000 0.00 0.00 0.00 3.20
2693 2810 3.814283 GAGATTGCATCCCATGTTCTCTC 59.186 47.826 0.00 0.00 33.80 3.20
2749 2866 2.793790 GCAGATCATGTCATGACTCGTC 59.206 50.000 25.55 17.09 43.01 4.20
2855 2976 4.084011 TGTGAGTGGTGAATTCACATCA 57.916 40.909 33.42 28.58 46.98 3.07
2889 3010 4.792972 AGGATCTCTCTTCCCCTTTTCATT 59.207 41.667 0.00 0.00 33.45 2.57
2892 3013 4.018870 ACAAGGATCTCTCTTCCCCTTTTC 60.019 45.833 0.00 0.00 35.23 2.29
2893 3014 3.919554 ACAAGGATCTCTCTTCCCCTTTT 59.080 43.478 0.00 0.00 35.23 2.27
2895 3016 3.111484 GACAAGGATCTCTCTTCCCCTT 58.889 50.000 0.00 0.00 37.69 3.95
2897 3018 2.472029 TGACAAGGATCTCTCTTCCCC 58.528 52.381 0.00 0.00 33.45 4.81
2932 3059 2.278857 CCCGTTCCATCGCTCTCG 60.279 66.667 0.00 0.00 0.00 4.04
2945 3072 6.227522 CAAATTTTATTTTTCACCCTCCCGT 58.772 36.000 0.00 0.00 0.00 5.28
2947 3074 6.539173 ACCAAATTTTATTTTTCACCCTCCC 58.461 36.000 0.00 0.00 0.00 4.30
2960 3087 5.305902 AGAAACGGGGACAACCAAATTTTAT 59.694 36.000 0.00 0.00 42.91 1.40
2971 3098 2.235016 CAAATGGAGAAACGGGGACAA 58.765 47.619 0.00 0.00 0.00 3.18
3163 3300 1.069765 CGGGGAGCACTGCGATATT 59.930 57.895 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.