Multiple sequence alignment - TraesCS4B01G089500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G089500 chr4B 100.000 3401 0 0 1 3401 90726625 90730025 0.000000e+00 6281.0
1 TraesCS4B01G089500 chr4B 98.765 81 1 0 2914 2994 90729618 90729538 9.840000e-31 145.0
2 TraesCS4B01G089500 chr4B 88.991 109 5 3 2906 3009 626026128 626026234 9.910000e-26 128.0
3 TraesCS4B01G089500 chr4D 96.042 1440 41 4 4 1430 61958916 61957480 0.000000e+00 2329.0
4 TraesCS4B01G089500 chr4D 96.072 1171 27 7 1437 2594 61957397 61956233 0.000000e+00 1890.0
5 TraesCS4B01G089500 chr4D 91.837 98 3 2 2588 2685 61956172 61956080 7.660000e-27 132.0
6 TraesCS4B01G089500 chr4A 95.640 1445 47 6 1 1430 535244997 535243554 0.000000e+00 2305.0
7 TraesCS4B01G089500 chr4A 94.913 1258 42 10 1437 2686 535243469 535242226 0.000000e+00 1949.0
8 TraesCS4B01G089500 chr4A 89.573 211 18 3 2705 2915 535242241 535242035 7.240000e-67 265.0
9 TraesCS4B01G089500 chr4A 92.079 101 8 0 2992 3092 535242037 535241937 3.540000e-30 143.0
10 TraesCS4B01G089500 chr4A 96.512 86 1 2 2914 2999 707045507 707045424 1.270000e-29 141.0
11 TraesCS4B01G089500 chr6B 96.795 312 10 0 3090 3401 556494360 556494049 3.890000e-144 521.0
12 TraesCS4B01G089500 chr6B 84.615 104 12 4 2218 2319 117802952 117803053 2.160000e-17 100.0
13 TraesCS4B01G089500 chr1B 95.312 320 13 2 3083 3401 211371484 211371802 1.090000e-139 507.0
14 TraesCS4B01G089500 chr1B 94.268 314 17 1 3089 3401 471201883 471201570 2.370000e-131 479.0
15 TraesCS4B01G089500 chr1B 89.091 110 5 4 2901 3006 302512473 302512579 2.750000e-26 130.0
16 TraesCS4B01G089500 chr1B 95.000 40 2 0 3092 3131 223151063 223151102 2.830000e-06 63.9
17 TraesCS4B01G089500 chr2B 95.208 313 13 2 3091 3401 12840717 12840405 8.480000e-136 494.0
18 TraesCS4B01G089500 chr3B 94.481 308 17 0 3094 3401 684670209 684670516 3.070000e-130 475.0
19 TraesCS4B01G089500 chr6A 89.655 290 28 2 3113 3401 544143488 544143776 5.360000e-98 368.0
20 TraesCS4B01G089500 chr6A 78.698 169 26 7 2156 2319 61401090 61401253 1.670000e-18 104.0
21 TraesCS4B01G089500 chr6A 92.683 41 3 0 3091 3131 503525214 503525174 3.670000e-05 60.2
22 TraesCS4B01G089500 chr1A 88.621 290 32 1 3112 3401 337976420 337976708 5.400000e-93 351.0
23 TraesCS4B01G089500 chr2A 88.276 290 31 3 3113 3401 15975792 15975505 9.040000e-91 344.0
24 TraesCS4B01G089500 chr5D 87.943 282 32 2 3121 3401 478530307 478530027 7.030000e-87 331.0
25 TraesCS4B01G089500 chr1D 95.506 89 3 1 2911 2999 92968121 92968208 1.270000e-29 141.0
26 TraesCS4B01G089500 chr6D 90.741 108 4 2 2906 3009 277256767 277256662 4.580000e-29 139.0
27 TraesCS4B01G089500 chrUn 95.455 88 1 2 2910 2994 88217857 88217944 1.650000e-28 137.0
28 TraesCS4B01G089500 chrUn 87.069 116 6 5 2914 3024 37336949 37336838 4.610000e-24 122.0
29 TraesCS4B01G089500 chr5B 91.346 104 1 6 2903 2999 550925079 550925181 5.920000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G089500 chr4B 90726625 90730025 3400 False 6281.000000 6281 100.000000 1 3401 1 chr4B.!!$F1 3400
1 TraesCS4B01G089500 chr4D 61956080 61958916 2836 True 1450.333333 2329 94.650333 4 2685 3 chr4D.!!$R1 2681
2 TraesCS4B01G089500 chr4A 535241937 535244997 3060 True 1165.500000 2305 93.051250 1 3092 4 chr4A.!!$R2 3091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 236 0.609681 GGGACACCATTGCCGGTTTA 60.610 55.0 1.9 0.0 37.07 2.01 F
1433 1450 0.179006 GGCCTCCCTCCATTTAGCAG 60.179 60.0 0.0 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1609 0.251077 AGCTGCAAGTCCAAAGGGAG 60.251 55.0 1.02 0.0 46.12 4.3 R
3111 3294 0.032815 TGTCGCAAACCATCAGTCGA 59.967 50.0 0.00 0.0 0.00 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.537355 TCTCTGTTTGTGATGAGAAGGAAAT 58.463 36.000 0.00 0.00 33.30 2.17
82 94 4.096984 CACCCTATCTTTGTTTCTCATGGC 59.903 45.833 0.00 0.00 0.00 4.40
224 236 0.609681 GGGACACCATTGCCGGTTTA 60.610 55.000 1.90 0.00 37.07 2.01
305 317 3.933048 ATGGCACTGAGCTGCACCC 62.933 63.158 1.02 0.00 44.79 4.61
456 468 6.095440 TGCTATAGGGCTTGTTTGAAATTCTC 59.905 38.462 1.04 0.00 0.00 2.87
457 469 6.095440 GCTATAGGGCTTGTTTGAAATTCTCA 59.905 38.462 1.04 0.00 0.00 3.27
491 503 9.665264 GAACATTGTGGTAGTTAAGAAAGAAAG 57.335 33.333 0.00 0.00 0.00 2.62
511 523 1.327764 GTTCGAACCGATGGATGCTTC 59.672 52.381 17.68 0.00 35.23 3.86
534 546 2.287393 TGATCGTTGTACATGTCGGG 57.713 50.000 0.00 0.00 0.00 5.14
851 864 2.440980 GCCAATCACAGCCCCCTC 60.441 66.667 0.00 0.00 0.00 4.30
898 911 4.169461 ACATCCTCCAATCCTCATTTCCAT 59.831 41.667 0.00 0.00 0.00 3.41
912 925 8.112822 TCCTCATTTCCATCCATTTAAACTACA 58.887 33.333 0.00 0.00 0.00 2.74
1065 1080 1.908793 CGCCGGATCCTCCAGGTAT 60.909 63.158 5.05 0.00 35.91 2.73
1227 1242 3.193691 ACGGTGAGTACAGAGAAATCTGG 59.806 47.826 9.85 0.00 41.76 3.86
1228 1243 3.429547 CGGTGAGTACAGAGAAATCTGGG 60.430 52.174 9.85 0.00 41.76 4.45
1430 1447 3.008485 GTCATAGGCCTCCCTCCATTTAG 59.992 52.174 9.68 0.00 41.75 1.85
1431 1448 1.435256 TAGGCCTCCCTCCATTTAGC 58.565 55.000 9.68 0.00 41.75 3.09
1432 1449 0.624500 AGGCCTCCCTCCATTTAGCA 60.625 55.000 0.00 0.00 36.46 3.49
1433 1450 0.179006 GGCCTCCCTCCATTTAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
1434 1451 0.821301 GCCTCCCTCCATTTAGCAGC 60.821 60.000 0.00 0.00 0.00 5.25
1435 1452 0.548031 CCTCCCTCCATTTAGCAGCA 59.452 55.000 0.00 0.00 0.00 4.41
1439 1534 3.048600 TCCCTCCATTTAGCAGCATACT 58.951 45.455 0.00 0.00 0.00 2.12
1514 1609 4.142534 TGCATCTGAACTAATTGCTTGCTC 60.143 41.667 1.04 0.00 34.47 4.26
1635 1736 7.976734 GCAAGTATAGACTAATCTGTGAAGTGT 59.023 37.037 0.00 0.00 36.29 3.55
1677 1778 9.416794 AGAACATATTATCTCGACTAAGCAATG 57.583 33.333 0.00 0.00 0.00 2.82
1678 1779 9.197694 GAACATATTATCTCGACTAAGCAATGT 57.802 33.333 0.00 0.00 0.00 2.71
1691 1792 5.648092 ACTAAGCAATGTTGTCCTGGTATTC 59.352 40.000 0.00 0.00 0.00 1.75
1830 1931 0.879090 GGCCGTTTGGTTCAAGGTAG 59.121 55.000 0.00 0.00 37.67 3.18
1831 1932 1.601166 GCCGTTTGGTTCAAGGTAGT 58.399 50.000 0.00 0.00 37.67 2.73
1832 1933 2.550639 GGCCGTTTGGTTCAAGGTAGTA 60.551 50.000 0.00 0.00 37.67 1.82
1847 1948 4.202441 AGGTAGTAATTGCTGAATGCTGG 58.798 43.478 6.28 0.00 43.37 4.85
2094 2204 0.179073 AGATATTCGTTGCCGCAGCT 60.179 50.000 5.63 0.00 40.80 4.24
2163 2273 0.770499 TTGATGACAAGCTCCACCCA 59.230 50.000 0.00 0.00 0.00 4.51
2271 2381 2.803203 CATGTTCTCCATGCTGGGG 58.197 57.895 2.86 0.00 44.21 4.96
2411 2521 2.662596 CCTGTGAGCTGGCCGTTA 59.337 61.111 0.00 0.00 0.00 3.18
2542 2658 4.508861 CCGTACGTGTAAATTATCAAGGGG 59.491 45.833 15.21 0.00 0.00 4.79
2667 2850 8.744652 TGACTCTTTTTGAAACTTGATTGGTTA 58.255 29.630 0.00 0.00 0.00 2.85
2668 2851 9.750125 GACTCTTTTTGAAACTTGATTGGTTAT 57.250 29.630 0.00 0.00 0.00 1.89
2675 2858 9.974980 TTTGAAACTTGATTGGTTATTAAGTCC 57.025 29.630 0.00 0.00 40.91 3.85
2676 2859 8.934023 TGAAACTTGATTGGTTATTAAGTCCT 57.066 30.769 0.00 0.00 40.91 3.85
2677 2860 9.362151 TGAAACTTGATTGGTTATTAAGTCCTT 57.638 29.630 0.00 0.00 40.91 3.36
2678 2861 9.626045 GAAACTTGATTGGTTATTAAGTCCTTG 57.374 33.333 0.00 0.00 40.91 3.61
2679 2862 7.158099 ACTTGATTGGTTATTAAGTCCTTGC 57.842 36.000 0.00 0.00 38.33 4.01
2680 2863 6.719370 ACTTGATTGGTTATTAAGTCCTTGCA 59.281 34.615 0.00 0.00 38.33 4.08
2681 2864 7.397192 ACTTGATTGGTTATTAAGTCCTTGCAT 59.603 33.333 0.00 0.00 38.33 3.96
2682 2865 8.815565 TTGATTGGTTATTAAGTCCTTGCATA 57.184 30.769 0.00 0.00 0.00 3.14
2683 2866 8.995027 TGATTGGTTATTAAGTCCTTGCATAT 57.005 30.769 0.00 0.00 0.00 1.78
2694 2877 7.573968 AAGTCCTTGCATATATTGACTTTCC 57.426 36.000 0.00 0.00 39.34 3.13
2695 2878 5.760253 AGTCCTTGCATATATTGACTTTCCG 59.240 40.000 0.00 0.00 29.20 4.30
2696 2879 4.515191 TCCTTGCATATATTGACTTTCCGC 59.485 41.667 0.00 0.00 0.00 5.54
2697 2880 4.275689 CCTTGCATATATTGACTTTCCGCA 59.724 41.667 0.00 0.00 0.00 5.69
2698 2881 5.221028 CCTTGCATATATTGACTTTCCGCAA 60.221 40.000 0.00 0.00 35.70 4.85
2699 2882 5.826601 TGCATATATTGACTTTCCGCAAA 57.173 34.783 0.00 0.00 0.00 3.68
2700 2883 6.201226 TGCATATATTGACTTTCCGCAAAA 57.799 33.333 0.00 0.00 0.00 2.44
2701 2884 6.625362 TGCATATATTGACTTTCCGCAAAAA 58.375 32.000 0.00 0.00 0.00 1.94
2841 3024 9.205719 CAGATTCTAGGATATGTTCTTCACATG 57.794 37.037 0.00 0.00 46.37 3.21
2845 3028 8.768501 TCTAGGATATGTTCTTCACATGTAGT 57.231 34.615 0.00 0.00 46.37 2.73
2923 3106 4.939052 AAGATAACATGTACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
2924 3107 3.912248 AGATAACATGTACTCCCTCCGT 58.088 45.455 0.00 0.00 0.00 4.69
2925 3108 4.287552 AGATAACATGTACTCCCTCCGTT 58.712 43.478 0.00 0.00 0.00 4.44
2926 3109 4.341520 AGATAACATGTACTCCCTCCGTTC 59.658 45.833 0.00 0.00 0.00 3.95
2927 3110 1.192428 ACATGTACTCCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62
2928 3111 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
2929 3112 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
2930 3113 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2931 3114 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
2932 3115 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
2933 3116 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
2934 3117 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2935 3118 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2936 3119 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2937 3120 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2938 3121 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2939 3122 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2940 3123 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2941 3124 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2942 3125 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2943 3126 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2944 3127 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2945 3128 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2946 3129 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2947 3130 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2948 3131 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2949 3132 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2950 3133 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2951 3134 7.893302 TCCAAAATAGATGACCCAACTTTGTAT 59.107 33.333 0.00 0.00 0.00 2.29
2952 3135 8.531146 CCAAAATAGATGACCCAACTTTGTATT 58.469 33.333 0.00 0.00 0.00 1.89
2959 3142 9.747898 AGATGACCCAACTTTGTATTAAATACA 57.252 29.630 0.00 0.00 43.54 2.29
2973 3156 9.747898 TGTATTAAATACAAAGTTGGGTCATCT 57.252 29.630 0.00 0.00 42.38 2.90
2979 3162 9.927668 AAATACAAAGTTGGGTCATCTATTTTG 57.072 29.630 0.00 0.00 0.00 2.44
2980 3163 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2981 3164 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2982 3165 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2983 3166 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2984 3167 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2985 3168 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2986 3169 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2987 3170 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2988 3171 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2989 3172 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2990 3173 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3045 3228 7.440198 TGCAAATTGAATCCAATAGTTGACAA 58.560 30.769 0.00 0.00 41.84 3.18
3050 3233 7.537596 TTGAATCCAATAGTTGACAAACCAT 57.462 32.000 0.00 0.00 36.94 3.55
3108 3291 7.605410 TTTCTAAACGACAAATCTATCCACC 57.395 36.000 0.00 0.00 0.00 4.61
3109 3292 6.288941 TCTAAACGACAAATCTATCCACCA 57.711 37.500 0.00 0.00 0.00 4.17
3110 3293 6.338146 TCTAAACGACAAATCTATCCACCAG 58.662 40.000 0.00 0.00 0.00 4.00
3111 3294 4.553330 AACGACAAATCTATCCACCAGT 57.447 40.909 0.00 0.00 0.00 4.00
3112 3295 4.124851 ACGACAAATCTATCCACCAGTC 57.875 45.455 0.00 0.00 0.00 3.51
3113 3296 3.116300 CGACAAATCTATCCACCAGTCG 58.884 50.000 0.00 0.00 41.00 4.18
3114 3297 4.386867 GACAAATCTATCCACCAGTCGA 57.613 45.455 0.00 0.00 0.00 4.20
3115 3298 4.113354 GACAAATCTATCCACCAGTCGAC 58.887 47.826 7.70 7.70 0.00 4.20
3116 3299 3.769844 ACAAATCTATCCACCAGTCGACT 59.230 43.478 13.58 13.58 0.00 4.18
3117 3300 4.115516 CAAATCTATCCACCAGTCGACTG 58.884 47.826 33.87 33.87 43.40 3.51
3118 3301 2.801077 TCTATCCACCAGTCGACTGA 57.199 50.000 40.21 24.36 46.59 3.41
3119 3302 3.298686 TCTATCCACCAGTCGACTGAT 57.701 47.619 40.21 27.13 46.59 2.90
3120 3303 2.952310 TCTATCCACCAGTCGACTGATG 59.048 50.000 40.21 35.20 46.59 3.07
3123 3306 3.914984 CACCAGTCGACTGATGGTT 57.085 52.632 40.21 19.27 44.98 3.67
3124 3307 2.169832 CACCAGTCGACTGATGGTTT 57.830 50.000 40.21 17.68 44.98 3.27
3125 3308 1.800586 CACCAGTCGACTGATGGTTTG 59.199 52.381 40.21 25.67 44.98 2.93
3126 3309 0.798776 CCAGTCGACTGATGGTTTGC 59.201 55.000 40.21 0.00 46.59 3.68
3127 3310 0.439985 CAGTCGACTGATGGTTTGCG 59.560 55.000 36.73 8.74 46.59 4.85
3128 3311 0.317160 AGTCGACTGATGGTTTGCGA 59.683 50.000 19.30 0.00 0.00 5.10
3129 3312 0.438830 GTCGACTGATGGTTTGCGAC 59.561 55.000 8.70 0.00 40.75 5.19
3130 3313 0.032815 TCGACTGATGGTTTGCGACA 59.967 50.000 0.00 0.00 0.00 4.35
3131 3314 0.439985 CGACTGATGGTTTGCGACAG 59.560 55.000 0.00 0.00 35.14 3.51
3132 3315 0.798776 GACTGATGGTTTGCGACAGG 59.201 55.000 0.00 0.00 33.57 4.00
3133 3316 1.237285 ACTGATGGTTTGCGACAGGC 61.237 55.000 0.00 0.00 43.96 4.85
3143 3326 3.545481 CGACAGGCACGCACGATC 61.545 66.667 0.00 0.00 0.00 3.69
3144 3327 3.545481 GACAGGCACGCACGATCG 61.545 66.667 14.88 14.88 0.00 3.69
3147 3330 4.742201 AGGCACGCACGATCGCTT 62.742 61.111 16.60 0.00 0.00 4.68
3148 3331 3.788766 GGCACGCACGATCGCTTT 61.789 61.111 16.60 0.00 0.00 3.51
3149 3332 2.173382 GCACGCACGATCGCTTTT 59.827 55.556 16.60 0.00 0.00 2.27
3150 3333 1.440353 GCACGCACGATCGCTTTTT 60.440 52.632 16.60 0.00 0.00 1.94
3174 3357 8.451908 TTTTCCTTCGATCTTTCTTTTCTTCT 57.548 30.769 0.00 0.00 0.00 2.85
3175 3358 7.659652 TTCCTTCGATCTTTCTTTTCTTCTC 57.340 36.000 0.00 0.00 0.00 2.87
3176 3359 6.998802 TCCTTCGATCTTTCTTTTCTTCTCT 58.001 36.000 0.00 0.00 0.00 3.10
3177 3360 6.870965 TCCTTCGATCTTTCTTTTCTTCTCTG 59.129 38.462 0.00 0.00 0.00 3.35
3178 3361 6.091986 CCTTCGATCTTTCTTTTCTTCTCTGG 59.908 42.308 0.00 0.00 0.00 3.86
3179 3362 4.932200 TCGATCTTTCTTTTCTTCTCTGGC 59.068 41.667 0.00 0.00 0.00 4.85
3180 3363 4.201666 CGATCTTTCTTTTCTTCTCTGGCG 60.202 45.833 0.00 0.00 0.00 5.69
3181 3364 2.808543 TCTTTCTTTTCTTCTCTGGCGC 59.191 45.455 0.00 0.00 0.00 6.53
3182 3365 1.148310 TTCTTTTCTTCTCTGGCGCG 58.852 50.000 0.00 0.00 0.00 6.86
3183 3366 0.033504 TCTTTTCTTCTCTGGCGCGT 59.966 50.000 8.43 0.00 0.00 6.01
3184 3367 1.271379 TCTTTTCTTCTCTGGCGCGTA 59.729 47.619 8.43 0.00 0.00 4.42
3185 3368 2.066262 CTTTTCTTCTCTGGCGCGTAA 58.934 47.619 8.43 0.00 0.00 3.18
3186 3369 2.157834 TTTCTTCTCTGGCGCGTAAA 57.842 45.000 8.43 0.00 0.00 2.01
3187 3370 2.157834 TTCTTCTCTGGCGCGTAAAA 57.842 45.000 8.43 0.00 0.00 1.52
3188 3371 2.157834 TCTTCTCTGGCGCGTAAAAA 57.842 45.000 8.43 0.00 0.00 1.94
3189 3372 2.066262 TCTTCTCTGGCGCGTAAAAAG 58.934 47.619 8.43 2.61 0.00 2.27
3190 3373 2.066262 CTTCTCTGGCGCGTAAAAAGA 58.934 47.619 8.43 1.95 0.00 2.52
3191 3374 1.710013 TCTCTGGCGCGTAAAAAGAG 58.290 50.000 8.43 12.83 36.53 2.85
3192 3375 0.095417 CTCTGGCGCGTAAAAAGAGC 59.905 55.000 8.43 0.00 0.00 4.09
3193 3376 0.320421 TCTGGCGCGTAAAAAGAGCT 60.320 50.000 8.43 0.00 34.82 4.09
3194 3377 0.517316 CTGGCGCGTAAAAAGAGCTT 59.483 50.000 8.43 0.00 34.82 3.74
3195 3378 0.948678 TGGCGCGTAAAAAGAGCTTT 59.051 45.000 8.43 0.00 34.82 3.51
3196 3379 1.327507 GGCGCGTAAAAAGAGCTTTG 58.672 50.000 8.43 0.00 34.82 2.77
3197 3380 1.334689 GGCGCGTAAAAAGAGCTTTGT 60.335 47.619 8.43 0.00 34.82 2.83
3198 3381 2.096119 GGCGCGTAAAAAGAGCTTTGTA 60.096 45.455 8.43 0.00 34.82 2.41
3199 3382 3.547601 GCGCGTAAAAAGAGCTTTGTAA 58.452 40.909 8.43 0.00 32.36 2.41
3200 3383 3.969981 GCGCGTAAAAAGAGCTTTGTAAA 59.030 39.130 8.43 0.00 32.36 2.01
3201 3384 4.438471 GCGCGTAAAAAGAGCTTTGTAAAA 59.562 37.500 8.43 0.00 32.36 1.52
3202 3385 5.052238 GCGCGTAAAAAGAGCTTTGTAAAAA 60.052 36.000 8.43 0.00 32.36 1.94
3203 3386 6.345487 GCGCGTAAAAAGAGCTTTGTAAAAAT 60.345 34.615 8.43 0.00 32.36 1.82
3204 3387 7.149096 GCGCGTAAAAAGAGCTTTGTAAAAATA 60.149 33.333 8.43 0.00 32.36 1.40
3205 3388 8.355806 CGCGTAAAAAGAGCTTTGTAAAAATAG 58.644 33.333 0.00 0.00 32.36 1.73
3206 3389 9.177304 GCGTAAAAAGAGCTTTGTAAAAATAGT 57.823 29.630 0.00 0.00 32.36 2.12
3209 3392 7.946655 AAAAGAGCTTTGTAAAAATAGTGCC 57.053 32.000 0.00 0.00 32.36 5.01
3210 3393 6.648879 AAGAGCTTTGTAAAAATAGTGCCA 57.351 33.333 0.00 0.00 0.00 4.92
3211 3394 6.013842 AGAGCTTTGTAAAAATAGTGCCAC 57.986 37.500 0.00 0.00 0.00 5.01
3212 3395 5.770162 AGAGCTTTGTAAAAATAGTGCCACT 59.230 36.000 1.54 1.54 0.00 4.00
3213 3396 5.772521 AGCTTTGTAAAAATAGTGCCACTG 58.227 37.500 7.83 0.00 0.00 3.66
3214 3397 4.385748 GCTTTGTAAAAATAGTGCCACTGC 59.614 41.667 7.83 0.00 38.26 4.40
3215 3398 5.772521 CTTTGTAAAAATAGTGCCACTGCT 58.227 37.500 7.83 0.00 38.71 4.24
3216 3399 6.569610 GCTTTGTAAAAATAGTGCCACTGCTA 60.570 38.462 7.83 0.00 38.71 3.49
3217 3400 6.494893 TTGTAAAAATAGTGCCACTGCTAG 57.505 37.500 7.83 0.00 38.71 3.42
3218 3401 4.941263 TGTAAAAATAGTGCCACTGCTAGG 59.059 41.667 7.83 0.00 38.71 3.02
3219 3402 4.301072 AAAAATAGTGCCACTGCTAGGA 57.699 40.909 7.83 0.00 38.71 2.94
3220 3403 4.510167 AAAATAGTGCCACTGCTAGGAT 57.490 40.909 7.83 0.00 38.71 3.24
3221 3404 4.510167 AAATAGTGCCACTGCTAGGATT 57.490 40.909 7.83 0.00 38.71 3.01
3222 3405 3.760580 ATAGTGCCACTGCTAGGATTC 57.239 47.619 7.83 0.00 38.71 2.52
3223 3406 1.279496 AGTGCCACTGCTAGGATTCA 58.721 50.000 0.00 0.00 38.71 2.57
3224 3407 1.630369 AGTGCCACTGCTAGGATTCAA 59.370 47.619 0.00 0.00 38.71 2.69
3225 3408 2.040278 AGTGCCACTGCTAGGATTCAAA 59.960 45.455 0.00 0.00 38.71 2.69
3226 3409 2.162408 GTGCCACTGCTAGGATTCAAAC 59.838 50.000 0.00 0.00 38.71 2.93
3227 3410 2.224744 TGCCACTGCTAGGATTCAAACA 60.225 45.455 0.00 0.00 38.71 2.83
3228 3411 2.162408 GCCACTGCTAGGATTCAAACAC 59.838 50.000 0.00 0.00 33.53 3.32
3229 3412 3.411446 CCACTGCTAGGATTCAAACACA 58.589 45.455 0.00 0.00 0.00 3.72
3230 3413 4.012374 CCACTGCTAGGATTCAAACACAT 58.988 43.478 0.00 0.00 0.00 3.21
3231 3414 4.142534 CCACTGCTAGGATTCAAACACATG 60.143 45.833 0.00 0.00 0.00 3.21
3232 3415 4.696877 CACTGCTAGGATTCAAACACATGA 59.303 41.667 0.00 0.00 0.00 3.07
3233 3416 4.697352 ACTGCTAGGATTCAAACACATGAC 59.303 41.667 0.00 0.00 0.00 3.06
3234 3417 4.009675 TGCTAGGATTCAAACACATGACC 58.990 43.478 0.00 0.00 0.00 4.02
3235 3418 4.263462 TGCTAGGATTCAAACACATGACCT 60.263 41.667 0.00 0.00 32.38 3.85
3236 3419 5.045942 TGCTAGGATTCAAACACATGACCTA 60.046 40.000 0.00 0.00 30.75 3.08
3237 3420 6.058183 GCTAGGATTCAAACACATGACCTAT 58.942 40.000 0.00 0.00 31.41 2.57
3238 3421 6.203723 GCTAGGATTCAAACACATGACCTATC 59.796 42.308 0.00 0.00 31.41 2.08
3239 3422 6.065976 AGGATTCAAACACATGACCTATCA 57.934 37.500 0.00 0.00 39.83 2.15
3240 3423 6.118170 AGGATTCAAACACATGACCTATCAG 58.882 40.000 0.00 0.00 38.57 2.90
3241 3424 5.882557 GGATTCAAACACATGACCTATCAGT 59.117 40.000 0.00 0.00 38.57 3.41
3242 3425 6.375455 GGATTCAAACACATGACCTATCAGTT 59.625 38.462 0.00 0.00 38.57 3.16
3243 3426 6.558771 TTCAAACACATGACCTATCAGTTG 57.441 37.500 0.00 0.00 38.57 3.16
3244 3427 4.455533 TCAAACACATGACCTATCAGTTGC 59.544 41.667 0.00 0.00 38.57 4.17
3245 3428 2.991250 ACACATGACCTATCAGTTGCC 58.009 47.619 0.00 0.00 38.57 4.52
3246 3429 2.305635 ACACATGACCTATCAGTTGCCA 59.694 45.455 0.00 0.00 38.57 4.92
3247 3430 2.679837 CACATGACCTATCAGTTGCCAC 59.320 50.000 0.00 0.00 38.57 5.01
3248 3431 2.292267 CATGACCTATCAGTTGCCACC 58.708 52.381 0.00 0.00 38.57 4.61
3249 3432 1.357137 TGACCTATCAGTTGCCACCA 58.643 50.000 0.00 0.00 0.00 4.17
3250 3433 1.003118 TGACCTATCAGTTGCCACCAC 59.997 52.381 0.00 0.00 0.00 4.16
3251 3434 0.036388 ACCTATCAGTTGCCACCACG 60.036 55.000 0.00 0.00 0.00 4.94
3252 3435 0.249120 CCTATCAGTTGCCACCACGA 59.751 55.000 0.00 0.00 0.00 4.35
3253 3436 1.359848 CTATCAGTTGCCACCACGAC 58.640 55.000 0.00 0.00 0.00 4.34
3254 3437 0.389296 TATCAGTTGCCACCACGACG 60.389 55.000 0.00 0.00 0.00 5.12
3255 3438 4.012895 CAGTTGCCACCACGACGC 62.013 66.667 0.00 0.00 0.00 5.19
3256 3439 4.539083 AGTTGCCACCACGACGCA 62.539 61.111 0.00 0.00 0.00 5.24
3257 3440 3.353836 GTTGCCACCACGACGCAT 61.354 61.111 0.00 0.00 31.44 4.73
3258 3441 2.593148 TTGCCACCACGACGCATT 60.593 55.556 0.00 0.00 31.44 3.56
3259 3442 1.301795 TTGCCACCACGACGCATTA 60.302 52.632 0.00 0.00 31.44 1.90
3260 3443 1.570347 TTGCCACCACGACGCATTAC 61.570 55.000 0.00 0.00 31.44 1.89
3261 3444 2.746803 GCCACCACGACGCATTACC 61.747 63.158 0.00 0.00 0.00 2.85
3262 3445 1.374885 CCACCACGACGCATTACCA 60.375 57.895 0.00 0.00 0.00 3.25
3263 3446 1.358725 CCACCACGACGCATTACCAG 61.359 60.000 0.00 0.00 0.00 4.00
3264 3447 1.740296 ACCACGACGCATTACCAGC 60.740 57.895 0.00 0.00 0.00 4.85
3265 3448 1.447838 CCACGACGCATTACCAGCT 60.448 57.895 0.00 0.00 0.00 4.24
3266 3449 1.695893 CCACGACGCATTACCAGCTG 61.696 60.000 6.78 6.78 0.00 4.24
3267 3450 0.735978 CACGACGCATTACCAGCTGA 60.736 55.000 17.39 0.00 0.00 4.26
3268 3451 0.458543 ACGACGCATTACCAGCTGAG 60.459 55.000 17.39 8.04 0.00 3.35
3269 3452 1.756375 CGACGCATTACCAGCTGAGC 61.756 60.000 17.39 9.89 0.00 4.26
3270 3453 0.460987 GACGCATTACCAGCTGAGCT 60.461 55.000 17.39 0.00 40.77 4.09
3271 3454 0.824109 ACGCATTACCAGCTGAGCTA 59.176 50.000 17.39 0.00 36.40 3.32
3272 3455 1.207089 ACGCATTACCAGCTGAGCTAA 59.793 47.619 17.39 8.04 36.40 3.09
3273 3456 1.594862 CGCATTACCAGCTGAGCTAAC 59.405 52.381 17.39 0.00 36.40 2.34
3274 3457 1.943340 GCATTACCAGCTGAGCTAACC 59.057 52.381 17.39 0.00 36.40 2.85
3275 3458 2.680805 GCATTACCAGCTGAGCTAACCA 60.681 50.000 17.39 0.00 36.40 3.67
3276 3459 2.762535 TTACCAGCTGAGCTAACCAC 57.237 50.000 17.39 0.00 36.40 4.16
3277 3460 0.902531 TACCAGCTGAGCTAACCACC 59.097 55.000 17.39 0.00 36.40 4.61
3278 3461 0.838122 ACCAGCTGAGCTAACCACCT 60.838 55.000 17.39 0.00 36.40 4.00
3279 3462 1.195115 CCAGCTGAGCTAACCACCTA 58.805 55.000 17.39 0.00 36.40 3.08
3280 3463 1.555075 CCAGCTGAGCTAACCACCTAA 59.445 52.381 17.39 0.00 36.40 2.69
3281 3464 2.171448 CCAGCTGAGCTAACCACCTAAT 59.829 50.000 17.39 0.00 36.40 1.73
3282 3465 3.370953 CCAGCTGAGCTAACCACCTAATT 60.371 47.826 17.39 0.00 36.40 1.40
3283 3466 4.265073 CAGCTGAGCTAACCACCTAATTT 58.735 43.478 8.42 0.00 36.40 1.82
3284 3467 4.702131 CAGCTGAGCTAACCACCTAATTTT 59.298 41.667 8.42 0.00 36.40 1.82
3285 3468 4.702131 AGCTGAGCTAACCACCTAATTTTG 59.298 41.667 4.49 0.00 36.99 2.44
3286 3469 4.459337 GCTGAGCTAACCACCTAATTTTGT 59.541 41.667 0.00 0.00 0.00 2.83
3287 3470 5.048013 GCTGAGCTAACCACCTAATTTTGTT 60.048 40.000 0.00 0.00 0.00 2.83
3288 3471 6.516693 GCTGAGCTAACCACCTAATTTTGTTT 60.517 38.462 0.00 0.00 0.00 2.83
3289 3472 6.977213 TGAGCTAACCACCTAATTTTGTTTC 58.023 36.000 0.00 0.00 0.00 2.78
3290 3473 6.547880 TGAGCTAACCACCTAATTTTGTTTCA 59.452 34.615 0.00 0.00 0.00 2.69
3291 3474 7.232534 TGAGCTAACCACCTAATTTTGTTTCAT 59.767 33.333 0.00 0.00 0.00 2.57
3292 3475 7.962441 AGCTAACCACCTAATTTTGTTTCATT 58.038 30.769 0.00 0.00 0.00 2.57
3293 3476 8.428852 AGCTAACCACCTAATTTTGTTTCATTT 58.571 29.630 0.00 0.00 0.00 2.32
3294 3477 8.495148 GCTAACCACCTAATTTTGTTTCATTTG 58.505 33.333 0.00 0.00 0.00 2.32
3295 3478 9.541143 CTAACCACCTAATTTTGTTTCATTTGT 57.459 29.630 0.00 0.00 0.00 2.83
3296 3479 7.784633 ACCACCTAATTTTGTTTCATTTGTG 57.215 32.000 0.00 0.00 0.00 3.33
3297 3480 6.765512 ACCACCTAATTTTGTTTCATTTGTGG 59.234 34.615 0.00 0.00 38.65 4.17
3298 3481 6.204495 CCACCTAATTTTGTTTCATTTGTGGG 59.796 38.462 0.00 0.00 34.02 4.61
3299 3482 6.765512 CACCTAATTTTGTTTCATTTGTGGGT 59.234 34.615 0.00 0.00 0.00 4.51
3300 3483 7.281999 CACCTAATTTTGTTTCATTTGTGGGTT 59.718 33.333 0.00 0.00 0.00 4.11
3301 3484 8.487028 ACCTAATTTTGTTTCATTTGTGGGTTA 58.513 29.630 0.00 0.00 0.00 2.85
3302 3485 9.331282 CCTAATTTTGTTTCATTTGTGGGTTAA 57.669 29.630 0.00 0.00 0.00 2.01
3307 3490 8.567285 TTTGTTTCATTTGTGGGTTAATTTGT 57.433 26.923 0.00 0.00 0.00 2.83
3308 3491 9.667107 TTTGTTTCATTTGTGGGTTAATTTGTA 57.333 25.926 0.00 0.00 0.00 2.41
3309 3492 9.838339 TTGTTTCATTTGTGGGTTAATTTGTAT 57.162 25.926 0.00 0.00 0.00 2.29
3310 3493 9.838339 TGTTTCATTTGTGGGTTAATTTGTATT 57.162 25.926 0.00 0.00 0.00 1.89
3317 3500 8.943594 TTGTGGGTTAATTTGTATTTCTACCT 57.056 30.769 0.00 0.00 0.00 3.08
3318 3501 8.943594 TGTGGGTTAATTTGTATTTCTACCTT 57.056 30.769 0.00 0.00 0.00 3.50
3334 3517 9.804758 ATTTCTACCTTAGTAAATGAGAACGAG 57.195 33.333 0.00 0.00 0.00 4.18
3335 3518 8.571461 TTCTACCTTAGTAAATGAGAACGAGA 57.429 34.615 0.00 0.00 0.00 4.04
3336 3519 8.571461 TCTACCTTAGTAAATGAGAACGAGAA 57.429 34.615 0.00 0.00 0.00 2.87
3337 3520 9.017509 TCTACCTTAGTAAATGAGAACGAGAAA 57.982 33.333 0.00 0.00 0.00 2.52
3338 3521 9.291664 CTACCTTAGTAAATGAGAACGAGAAAG 57.708 37.037 0.00 0.00 0.00 2.62
3339 3522 7.893658 ACCTTAGTAAATGAGAACGAGAAAGA 58.106 34.615 0.00 0.00 0.00 2.52
3340 3523 8.365647 ACCTTAGTAAATGAGAACGAGAAAGAA 58.634 33.333 0.00 0.00 0.00 2.52
3341 3524 9.204570 CCTTAGTAAATGAGAACGAGAAAGAAA 57.795 33.333 0.00 0.00 0.00 2.52
3343 3526 9.976511 TTAGTAAATGAGAACGAGAAAGAAAGA 57.023 29.630 0.00 0.00 0.00 2.52
3344 3527 8.300495 AGTAAATGAGAACGAGAAAGAAAGAC 57.700 34.615 0.00 0.00 0.00 3.01
3345 3528 6.546972 AAATGAGAACGAGAAAGAAAGACC 57.453 37.500 0.00 0.00 0.00 3.85
3346 3529 4.665833 TGAGAACGAGAAAGAAAGACCA 57.334 40.909 0.00 0.00 0.00 4.02
3347 3530 4.369182 TGAGAACGAGAAAGAAAGACCAC 58.631 43.478 0.00 0.00 0.00 4.16
3348 3531 4.142026 TGAGAACGAGAAAGAAAGACCACA 60.142 41.667 0.00 0.00 0.00 4.17
3349 3532 4.766375 AGAACGAGAAAGAAAGACCACAA 58.234 39.130 0.00 0.00 0.00 3.33
3350 3533 4.571176 AGAACGAGAAAGAAAGACCACAAC 59.429 41.667 0.00 0.00 0.00 3.32
3351 3534 3.869065 ACGAGAAAGAAAGACCACAACA 58.131 40.909 0.00 0.00 0.00 3.33
3352 3535 3.621715 ACGAGAAAGAAAGACCACAACAC 59.378 43.478 0.00 0.00 0.00 3.32
3353 3536 3.002348 CGAGAAAGAAAGACCACAACACC 59.998 47.826 0.00 0.00 0.00 4.16
3354 3537 4.200092 GAGAAAGAAAGACCACAACACCT 58.800 43.478 0.00 0.00 0.00 4.00
3355 3538 4.600062 AGAAAGAAAGACCACAACACCTT 58.400 39.130 0.00 0.00 0.00 3.50
3356 3539 5.016831 AGAAAGAAAGACCACAACACCTTT 58.983 37.500 0.00 0.00 0.00 3.11
3357 3540 4.718940 AAGAAAGACCACAACACCTTTG 57.281 40.909 0.00 0.00 0.00 2.77
3358 3541 3.963129 AGAAAGACCACAACACCTTTGA 58.037 40.909 0.00 0.00 0.00 2.69
3359 3542 4.536765 AGAAAGACCACAACACCTTTGAT 58.463 39.130 0.00 0.00 0.00 2.57
3360 3543 4.339247 AGAAAGACCACAACACCTTTGATG 59.661 41.667 0.00 0.00 0.00 3.07
3361 3544 3.576078 AGACCACAACACCTTTGATGA 57.424 42.857 0.00 0.00 30.22 2.92
3362 3545 3.480470 AGACCACAACACCTTTGATGAG 58.520 45.455 0.00 0.00 30.22 2.90
3363 3546 2.554032 GACCACAACACCTTTGATGAGG 59.446 50.000 0.00 0.00 40.64 3.86
3364 3547 2.174639 ACCACAACACCTTTGATGAGGA 59.825 45.455 5.59 0.00 38.16 3.71
3365 3548 2.816087 CCACAACACCTTTGATGAGGAG 59.184 50.000 0.00 0.00 38.16 3.69
3366 3549 3.496692 CCACAACACCTTTGATGAGGAGA 60.497 47.826 0.00 0.00 38.16 3.71
3367 3550 3.499918 CACAACACCTTTGATGAGGAGAC 59.500 47.826 0.00 0.00 39.25 3.36
3368 3551 3.136443 ACAACACCTTTGATGAGGAGACA 59.864 43.478 0.00 0.00 39.25 3.41
3369 3552 4.136796 CAACACCTTTGATGAGGAGACAA 58.863 43.478 0.00 0.00 39.25 3.18
3370 3553 4.437682 ACACCTTTGATGAGGAGACAAA 57.562 40.909 0.00 0.00 39.25 2.83
3371 3554 4.792068 ACACCTTTGATGAGGAGACAAAA 58.208 39.130 0.00 0.00 39.25 2.44
3372 3555 4.580580 ACACCTTTGATGAGGAGACAAAAC 59.419 41.667 0.00 0.00 39.25 2.43
3373 3556 4.022849 CACCTTTGATGAGGAGACAAAACC 60.023 45.833 0.00 0.00 39.25 3.27
3374 3557 4.144297 CCTTTGATGAGGAGACAAAACCA 58.856 43.478 0.00 0.00 39.25 3.67
3375 3558 4.768968 CCTTTGATGAGGAGACAAAACCAT 59.231 41.667 0.00 0.00 39.25 3.55
3376 3559 5.244626 CCTTTGATGAGGAGACAAAACCATT 59.755 40.000 0.00 0.00 39.25 3.16
3377 3560 6.239402 CCTTTGATGAGGAGACAAAACCATTT 60.239 38.462 0.00 0.00 39.25 2.32
3378 3561 8.214900 CCTTTGATGAGGAGACAAAACCATTTG 61.215 40.741 0.00 0.03 43.91 2.32
3389 3572 5.816449 CAAAACCATTTGCTCCAAGTTTT 57.184 34.783 0.00 0.00 39.50 2.43
3390 3573 6.193514 CAAAACCATTTGCTCCAAGTTTTT 57.806 33.333 0.00 0.00 39.50 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 94 3.614616 GGTAGCAACTTGACGAATCTCAG 59.385 47.826 0.00 0.00 0.00 3.35
86 98 5.006746 CCATAAGGTAGCAACTTGACGAATC 59.993 44.000 0.00 0.00 0.00 2.52
224 236 5.449451 GGTGTTTACAACCAACTCGTCAAAT 60.449 40.000 0.00 0.00 0.00 2.32
305 317 0.178998 AATAGCAGCAGCCATCTGGG 60.179 55.000 0.00 0.00 43.56 4.45
456 468 7.769272 AACTACCACAATGTTCAACATTTTG 57.231 32.000 18.74 18.74 45.80 2.44
457 469 9.528018 CTTAACTACCACAATGTTCAACATTTT 57.472 29.630 13.35 4.44 45.80 1.82
491 503 1.327764 GAAGCATCCATCGGTTCGAAC 59.672 52.381 20.14 20.14 39.99 3.95
511 523 4.444388 CCCGACATGTACAACGATCATAAG 59.556 45.833 17.50 4.02 0.00 1.73
534 546 6.735130 AGCAAAACCAGTAACAGAACATAAC 58.265 36.000 0.00 0.00 0.00 1.89
851 864 1.302832 GCCCATGAAGGATAGGCCG 60.303 63.158 0.00 0.00 43.43 6.13
898 911 6.209788 GGGAAATGTGGTGTAGTTTAAATGGA 59.790 38.462 0.00 0.00 0.00 3.41
912 925 1.480498 GGTTGTGGAGGGAAATGTGGT 60.480 52.381 0.00 0.00 0.00 4.16
1053 1068 1.135094 CTGTGGCATACCTGGAGGAT 58.865 55.000 0.00 0.00 38.94 3.24
1155 1170 4.003788 CTCGAGGTGGCAACGGGT 62.004 66.667 3.91 0.00 42.51 5.28
1161 1176 3.449227 CCTACGCTCGAGGTGGCA 61.449 66.667 15.58 0.00 0.00 4.92
1228 1243 3.397613 AATCTCAGCTGCGAGCCCC 62.398 63.158 12.62 0.00 43.77 5.80
1297 1312 5.123027 GGCCTGAAACAAATAGAAGACAGAG 59.877 44.000 0.00 0.00 0.00 3.35
1430 1447 3.748048 TGAGAACTTGTGAAGTATGCTGC 59.252 43.478 0.00 0.00 41.91 5.25
1431 1448 4.751600 TGTGAGAACTTGTGAAGTATGCTG 59.248 41.667 0.00 0.00 41.91 4.41
1432 1449 4.960938 TGTGAGAACTTGTGAAGTATGCT 58.039 39.130 0.00 0.00 41.91 3.79
1433 1450 5.409520 TCATGTGAGAACTTGTGAAGTATGC 59.590 40.000 0.00 0.00 41.91 3.14
1434 1451 6.648310 AGTCATGTGAGAACTTGTGAAGTATG 59.352 38.462 0.00 0.00 41.91 2.39
1435 1452 6.648310 CAGTCATGTGAGAACTTGTGAAGTAT 59.352 38.462 0.00 0.00 41.91 2.12
1439 1534 5.022282 TCAGTCATGTGAGAACTTGTGAA 57.978 39.130 0.00 0.00 0.00 3.18
1514 1609 0.251077 AGCTGCAAGTCCAAAGGGAG 60.251 55.000 1.02 0.00 46.12 4.30
1661 1762 4.081420 AGGACAACATTGCTTAGTCGAGAT 60.081 41.667 0.00 0.00 0.00 2.75
1677 1778 7.308435 CAGAATTGAAAGAATACCAGGACAAC 58.692 38.462 0.00 0.00 0.00 3.32
1678 1779 6.071952 GCAGAATTGAAAGAATACCAGGACAA 60.072 38.462 0.00 0.00 0.00 3.18
1691 1792 3.441572 CCTGGTACCTGCAGAATTGAAAG 59.558 47.826 17.39 3.69 0.00 2.62
1805 1906 4.653888 AACCAAACGGCCTCGGGG 62.654 66.667 0.00 0.00 41.39 5.73
1847 1948 0.935196 AAGCCGTGAAAACTGACGAC 59.065 50.000 0.00 0.00 37.81 4.34
2094 2204 1.180029 GGTCAGTACAAGGACGCCTA 58.820 55.000 0.00 0.00 34.87 3.93
2163 2273 3.728373 GGGTCGAATGGGCCACCT 61.728 66.667 9.28 0.00 37.76 4.00
2271 2381 1.207329 ACGTAGGCCTGGATGAAGAAC 59.793 52.381 17.99 0.07 0.00 3.01
2542 2658 2.808543 AGAACGGTCATGTTTCTTCTGC 59.191 45.455 1.87 0.00 30.75 4.26
2668 2851 9.120538 GGAAAGTCAATATATGCAAGGACTTAA 57.879 33.333 14.20 0.00 42.79 1.85
2669 2852 7.441157 CGGAAAGTCAATATATGCAAGGACTTA 59.559 37.037 14.20 0.00 42.79 2.24
2670 2853 6.260936 CGGAAAGTCAATATATGCAAGGACTT 59.739 38.462 0.00 1.35 44.77 3.01
2671 2854 5.760253 CGGAAAGTCAATATATGCAAGGACT 59.240 40.000 0.00 0.00 37.21 3.85
2672 2855 5.560953 GCGGAAAGTCAATATATGCAAGGAC 60.561 44.000 0.00 0.00 0.00 3.85
2673 2856 4.515191 GCGGAAAGTCAATATATGCAAGGA 59.485 41.667 0.00 0.00 0.00 3.36
2674 2857 4.275689 TGCGGAAAGTCAATATATGCAAGG 59.724 41.667 0.00 0.00 0.00 3.61
2675 2858 5.422666 TGCGGAAAGTCAATATATGCAAG 57.577 39.130 0.00 0.00 0.00 4.01
2676 2859 5.826601 TTGCGGAAAGTCAATATATGCAA 57.173 34.783 0.00 0.00 37.46 4.08
2677 2860 5.826601 TTTGCGGAAAGTCAATATATGCA 57.173 34.783 0.00 0.00 0.00 3.96
2785 2968 7.531857 TTTTGGTATAATTCCAGCACTTCAA 57.468 32.000 0.00 0.00 36.28 2.69
2906 3089 2.762327 GGAACGGAGGGAGTACATGTTA 59.238 50.000 2.30 0.00 0.00 2.41
2912 3095 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2913 3096 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2914 3097 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2915 3098 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2916 3099 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2917 3100 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2918 3101 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2919 3102 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2920 3103 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2921 3104 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2922 3105 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2923 3106 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2924 3107 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2925 3108 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2926 3109 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2933 3116 9.747898 TGTATTTAATACAAAGTTGGGTCATCT 57.252 29.630 14.57 0.00 42.38 2.90
2947 3130 9.747898 AGATGACCCAACTTTGTATTTAATACA 57.252 29.630 13.14 13.14 43.54 2.29
2953 3136 9.927668 CAAAATAGATGACCCAACTTTGTATTT 57.072 29.630 0.00 0.00 0.00 1.40
2954 3137 8.531146 CCAAAATAGATGACCCAACTTTGTATT 58.469 33.333 0.00 0.00 0.00 1.89
2955 3138 7.893302 TCCAAAATAGATGACCCAACTTTGTAT 59.107 33.333 0.00 0.00 0.00 2.29
2956 3139 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2957 3140 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2958 3141 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2959 3142 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2960 3143 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2961 3144 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2962 3145 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2963 3146 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2964 3147 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2965 3148 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2966 3149 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2967 3150 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2968 3151 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2969 3152 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2970 3153 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2971 3154 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2972 3155 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2973 3156 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2974 3157 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2975 3158 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2976 3159 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2977 3160 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2978 3161 2.832643 TACATACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
2979 3162 3.228453 TGATACATACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
2980 3163 6.777213 ATATGATACATACTCCCTCCGTTC 57.223 41.667 0.00 0.00 0.00 3.95
2981 3164 7.556996 GTCTATATGATACATACTCCCTCCGTT 59.443 40.741 0.00 0.00 0.00 4.44
2982 3165 7.055378 GTCTATATGATACATACTCCCTCCGT 58.945 42.308 0.00 0.00 0.00 4.69
2983 3166 6.487331 GGTCTATATGATACATACTCCCTCCG 59.513 46.154 0.00 0.00 0.00 4.63
2984 3167 6.487331 CGGTCTATATGATACATACTCCCTCC 59.513 46.154 0.00 0.00 0.00 4.30
2985 3168 7.281098 TCGGTCTATATGATACATACTCCCTC 58.719 42.308 0.00 0.00 0.00 4.30
2986 3169 7.209340 TCGGTCTATATGATACATACTCCCT 57.791 40.000 0.00 0.00 0.00 4.20
2987 3170 7.556996 ACTTCGGTCTATATGATACATACTCCC 59.443 40.741 0.00 0.00 0.00 4.30
2988 3171 8.508883 ACTTCGGTCTATATGATACATACTCC 57.491 38.462 0.00 0.00 0.00 3.85
2989 3172 9.776158 CAACTTCGGTCTATATGATACATACTC 57.224 37.037 0.00 0.00 0.00 2.59
2990 3173 8.244802 GCAACTTCGGTCTATATGATACATACT 58.755 37.037 0.00 0.00 0.00 2.12
3024 3207 7.961351 TGGTTTGTCAACTATTGGATTCAATT 58.039 30.769 4.09 0.00 42.90 2.32
3092 3275 3.116300 CGACTGGTGGATAGATTTGTCG 58.884 50.000 0.00 0.00 39.61 4.35
3093 3276 4.113354 GTCGACTGGTGGATAGATTTGTC 58.887 47.826 8.70 0.00 0.00 3.18
3094 3277 3.769844 AGTCGACTGGTGGATAGATTTGT 59.230 43.478 19.30 0.00 0.00 2.83
3095 3278 4.115516 CAGTCGACTGGTGGATAGATTTG 58.884 47.826 33.36 7.43 40.20 2.32
3096 3279 4.023980 TCAGTCGACTGGTGGATAGATTT 58.976 43.478 37.82 1.93 43.91 2.17
3097 3280 3.632333 TCAGTCGACTGGTGGATAGATT 58.368 45.455 37.82 2.40 43.91 2.40
3098 3281 3.298686 TCAGTCGACTGGTGGATAGAT 57.701 47.619 37.82 2.61 43.91 1.98
3099 3282 2.801077 TCAGTCGACTGGTGGATAGA 57.199 50.000 37.82 18.59 43.91 1.98
3106 3289 1.878102 GCAAACCATCAGTCGACTGGT 60.878 52.381 37.82 32.40 45.08 4.00
3107 3290 0.798776 GCAAACCATCAGTCGACTGG 59.201 55.000 37.82 28.03 43.91 4.00
3108 3291 0.439985 CGCAAACCATCAGTCGACTG 59.560 55.000 34.76 34.76 45.08 3.51
3109 3292 0.317160 TCGCAAACCATCAGTCGACT 59.683 50.000 13.58 13.58 0.00 4.18
3110 3293 0.438830 GTCGCAAACCATCAGTCGAC 59.561 55.000 7.70 7.70 39.25 4.20
3111 3294 0.032815 TGTCGCAAACCATCAGTCGA 59.967 50.000 0.00 0.00 0.00 4.20
3112 3295 0.439985 CTGTCGCAAACCATCAGTCG 59.560 55.000 0.00 0.00 0.00 4.18
3113 3296 0.798776 CCTGTCGCAAACCATCAGTC 59.201 55.000 0.00 0.00 0.00 3.51
3114 3297 1.237285 GCCTGTCGCAAACCATCAGT 61.237 55.000 0.00 0.00 37.47 3.41
3115 3298 1.503542 GCCTGTCGCAAACCATCAG 59.496 57.895 0.00 0.00 37.47 2.90
3116 3299 3.667087 GCCTGTCGCAAACCATCA 58.333 55.556 0.00 0.00 37.47 3.07
3126 3309 3.545481 GATCGTGCGTGCCTGTCG 61.545 66.667 0.00 0.00 0.00 4.35
3127 3310 3.545481 CGATCGTGCGTGCCTGTC 61.545 66.667 7.03 0.00 0.00 3.51
3130 3313 4.742201 AAGCGATCGTGCGTGCCT 62.742 61.111 17.81 0.00 40.67 4.75
3131 3314 2.780149 AAAAAGCGATCGTGCGTGCC 62.780 55.000 17.81 0.00 40.67 5.01
3132 3315 1.440353 AAAAAGCGATCGTGCGTGC 60.440 52.632 17.81 0.00 40.67 5.34
3133 3316 4.818417 AAAAAGCGATCGTGCGTG 57.182 50.000 17.81 0.00 40.67 5.34
3148 3331 8.903820 AGAAGAAAAGAAAGATCGAAGGAAAAA 58.096 29.630 0.00 0.00 0.00 1.94
3149 3332 8.451908 AGAAGAAAAGAAAGATCGAAGGAAAA 57.548 30.769 0.00 0.00 0.00 2.29
3150 3333 7.934120 AGAGAAGAAAAGAAAGATCGAAGGAAA 59.066 33.333 0.00 0.00 0.00 3.13
3151 3334 7.386299 CAGAGAAGAAAAGAAAGATCGAAGGAA 59.614 37.037 0.00 0.00 0.00 3.36
3152 3335 6.870965 CAGAGAAGAAAAGAAAGATCGAAGGA 59.129 38.462 0.00 0.00 0.00 3.36
3153 3336 6.091986 CCAGAGAAGAAAAGAAAGATCGAAGG 59.908 42.308 0.00 0.00 0.00 3.46
3154 3337 6.402011 GCCAGAGAAGAAAAGAAAGATCGAAG 60.402 42.308 0.00 0.00 0.00 3.79
3155 3338 5.409826 GCCAGAGAAGAAAAGAAAGATCGAA 59.590 40.000 0.00 0.00 0.00 3.71
3156 3339 4.932200 GCCAGAGAAGAAAAGAAAGATCGA 59.068 41.667 0.00 0.00 0.00 3.59
3157 3340 4.201666 CGCCAGAGAAGAAAAGAAAGATCG 60.202 45.833 0.00 0.00 0.00 3.69
3158 3341 4.436718 GCGCCAGAGAAGAAAAGAAAGATC 60.437 45.833 0.00 0.00 0.00 2.75
3159 3342 3.438434 GCGCCAGAGAAGAAAAGAAAGAT 59.562 43.478 0.00 0.00 0.00 2.40
3160 3343 2.808543 GCGCCAGAGAAGAAAAGAAAGA 59.191 45.455 0.00 0.00 0.00 2.52
3161 3344 2.412065 CGCGCCAGAGAAGAAAAGAAAG 60.412 50.000 0.00 0.00 0.00 2.62
3162 3345 1.531149 CGCGCCAGAGAAGAAAAGAAA 59.469 47.619 0.00 0.00 0.00 2.52
3163 3346 1.148310 CGCGCCAGAGAAGAAAAGAA 58.852 50.000 0.00 0.00 0.00 2.52
3164 3347 0.033504 ACGCGCCAGAGAAGAAAAGA 59.966 50.000 5.73 0.00 0.00 2.52
3165 3348 1.710013 TACGCGCCAGAGAAGAAAAG 58.290 50.000 5.73 0.00 0.00 2.27
3166 3349 2.157834 TTACGCGCCAGAGAAGAAAA 57.842 45.000 5.73 0.00 0.00 2.29
3167 3350 2.157834 TTTACGCGCCAGAGAAGAAA 57.842 45.000 5.73 0.00 0.00 2.52
3168 3351 2.157834 TTTTACGCGCCAGAGAAGAA 57.842 45.000 5.73 0.00 0.00 2.52
3169 3352 2.066262 CTTTTTACGCGCCAGAGAAGA 58.934 47.619 5.73 0.00 0.00 2.87
3170 3353 2.066262 TCTTTTTACGCGCCAGAGAAG 58.934 47.619 5.73 3.54 0.00 2.85
3171 3354 2.066262 CTCTTTTTACGCGCCAGAGAA 58.934 47.619 5.73 0.00 34.06 2.87
3172 3355 1.710013 CTCTTTTTACGCGCCAGAGA 58.290 50.000 5.73 2.63 34.06 3.10
3173 3356 0.095417 GCTCTTTTTACGCGCCAGAG 59.905 55.000 5.73 10.94 35.11 3.35
3174 3357 0.320421 AGCTCTTTTTACGCGCCAGA 60.320 50.000 5.73 0.00 0.00 3.86
3175 3358 0.517316 AAGCTCTTTTTACGCGCCAG 59.483 50.000 5.73 0.00 0.00 4.85
3176 3359 0.948678 AAAGCTCTTTTTACGCGCCA 59.051 45.000 5.73 0.00 0.00 5.69
3177 3360 1.327507 CAAAGCTCTTTTTACGCGCC 58.672 50.000 5.73 0.00 0.00 6.53
3178 3361 2.032414 ACAAAGCTCTTTTTACGCGC 57.968 45.000 5.73 0.00 0.00 6.86
3179 3362 6.485253 TTTTTACAAAGCTCTTTTTACGCG 57.515 33.333 3.53 3.53 0.00 6.01
3180 3363 9.177304 ACTATTTTTACAAAGCTCTTTTTACGC 57.823 29.630 0.00 0.00 0.00 4.42
3183 3366 9.471084 GGCACTATTTTTACAAAGCTCTTTTTA 57.529 29.630 0.00 0.00 0.00 1.52
3184 3367 7.984617 TGGCACTATTTTTACAAAGCTCTTTTT 59.015 29.630 0.00 0.00 0.00 1.94
3185 3368 7.438160 GTGGCACTATTTTTACAAAGCTCTTTT 59.562 33.333 11.13 0.00 0.00 2.27
3186 3369 6.923508 GTGGCACTATTTTTACAAAGCTCTTT 59.076 34.615 11.13 0.00 0.00 2.52
3187 3370 6.265422 AGTGGCACTATTTTTACAAAGCTCTT 59.735 34.615 20.61 0.00 0.00 2.85
3188 3371 5.770162 AGTGGCACTATTTTTACAAAGCTCT 59.230 36.000 20.61 0.00 0.00 4.09
3189 3372 5.858581 CAGTGGCACTATTTTTACAAAGCTC 59.141 40.000 21.59 0.00 0.00 4.09
3190 3373 5.772521 CAGTGGCACTATTTTTACAAAGCT 58.227 37.500 21.59 0.00 0.00 3.74
3191 3374 4.385748 GCAGTGGCACTATTTTTACAAAGC 59.614 41.667 21.59 11.01 40.72 3.51
3192 3375 5.772521 AGCAGTGGCACTATTTTTACAAAG 58.227 37.500 21.59 4.28 44.61 2.77
3193 3376 5.782893 AGCAGTGGCACTATTTTTACAAA 57.217 34.783 21.59 0.00 44.61 2.83
3194 3377 5.414454 CCTAGCAGTGGCACTATTTTTACAA 59.586 40.000 21.59 0.00 44.61 2.41
3195 3378 4.941263 CCTAGCAGTGGCACTATTTTTACA 59.059 41.667 21.59 0.00 44.61 2.41
3196 3379 5.183228 TCCTAGCAGTGGCACTATTTTTAC 58.817 41.667 21.59 4.12 44.61 2.01
3197 3380 5.429681 TCCTAGCAGTGGCACTATTTTTA 57.570 39.130 21.59 7.56 44.61 1.52
3198 3381 4.301072 TCCTAGCAGTGGCACTATTTTT 57.699 40.909 21.59 6.78 44.61 1.94
3199 3382 4.510167 ATCCTAGCAGTGGCACTATTTT 57.490 40.909 21.59 8.57 44.61 1.82
3200 3383 4.080356 TGAATCCTAGCAGTGGCACTATTT 60.080 41.667 21.59 11.09 44.61 1.40
3201 3384 3.455910 TGAATCCTAGCAGTGGCACTATT 59.544 43.478 21.59 14.95 44.61 1.73
3202 3385 3.041211 TGAATCCTAGCAGTGGCACTAT 58.959 45.455 21.59 14.46 44.61 2.12
3203 3386 2.466846 TGAATCCTAGCAGTGGCACTA 58.533 47.619 21.59 3.55 44.61 2.74
3204 3387 1.279496 TGAATCCTAGCAGTGGCACT 58.721 50.000 15.88 15.88 44.61 4.40
3205 3388 2.113860 TTGAATCCTAGCAGTGGCAC 57.886 50.000 10.29 10.29 44.61 5.01
3206 3389 2.224744 TGTTTGAATCCTAGCAGTGGCA 60.225 45.455 0.00 0.00 44.61 4.92
3207 3390 2.162408 GTGTTTGAATCCTAGCAGTGGC 59.838 50.000 0.00 0.00 41.61 5.01
3208 3391 3.411446 TGTGTTTGAATCCTAGCAGTGG 58.589 45.455 0.00 0.00 0.00 4.00
3209 3392 4.696877 TCATGTGTTTGAATCCTAGCAGTG 59.303 41.667 0.00 0.00 0.00 3.66
3210 3393 4.697352 GTCATGTGTTTGAATCCTAGCAGT 59.303 41.667 0.00 0.00 0.00 4.40
3211 3394 4.095483 GGTCATGTGTTTGAATCCTAGCAG 59.905 45.833 0.00 0.00 0.00 4.24
3212 3395 4.009675 GGTCATGTGTTTGAATCCTAGCA 58.990 43.478 0.00 0.00 0.00 3.49
3213 3396 4.265073 AGGTCATGTGTTTGAATCCTAGC 58.735 43.478 0.00 0.00 0.00 3.42
3214 3397 7.275183 TGATAGGTCATGTGTTTGAATCCTAG 58.725 38.462 0.00 0.00 31.55 3.02
3215 3398 7.092891 ACTGATAGGTCATGTGTTTGAATCCTA 60.093 37.037 0.00 0.00 32.19 2.94
3216 3399 6.065976 TGATAGGTCATGTGTTTGAATCCT 57.934 37.500 0.00 0.00 0.00 3.24
3217 3400 5.882557 ACTGATAGGTCATGTGTTTGAATCC 59.117 40.000 0.00 0.00 32.98 3.01
3218 3401 6.992063 ACTGATAGGTCATGTGTTTGAATC 57.008 37.500 0.00 0.00 32.98 2.52
3219 3402 6.349611 GCAACTGATAGGTCATGTGTTTGAAT 60.350 38.462 0.00 0.00 32.98 2.57
3220 3403 5.048782 GCAACTGATAGGTCATGTGTTTGAA 60.049 40.000 0.00 0.00 32.98 2.69
3221 3404 4.455533 GCAACTGATAGGTCATGTGTTTGA 59.544 41.667 0.00 0.00 32.98 2.69
3222 3405 4.379813 GGCAACTGATAGGTCATGTGTTTG 60.380 45.833 0.00 0.00 32.98 2.93
3223 3406 3.758554 GGCAACTGATAGGTCATGTGTTT 59.241 43.478 0.00 0.00 32.98 2.83
3224 3407 3.244875 TGGCAACTGATAGGTCATGTGTT 60.245 43.478 0.00 0.00 32.98 3.32
3225 3408 2.305635 TGGCAACTGATAGGTCATGTGT 59.694 45.455 0.00 0.00 32.98 3.72
3226 3409 2.679837 GTGGCAACTGATAGGTCATGTG 59.320 50.000 0.00 0.00 32.98 3.21
3227 3410 2.356125 GGTGGCAACTGATAGGTCATGT 60.356 50.000 0.00 0.00 32.98 3.21
3228 3411 2.292267 GGTGGCAACTGATAGGTCATG 58.708 52.381 0.00 0.00 32.98 3.07
3229 3412 1.915489 TGGTGGCAACTGATAGGTCAT 59.085 47.619 3.27 0.00 32.98 3.06
3230 3413 1.003118 GTGGTGGCAACTGATAGGTCA 59.997 52.381 3.27 0.00 37.61 4.02
3231 3414 1.739067 GTGGTGGCAACTGATAGGTC 58.261 55.000 3.27 0.00 37.61 3.85
3232 3415 0.036388 CGTGGTGGCAACTGATAGGT 60.036 55.000 3.27 0.00 37.61 3.08
3233 3416 0.249120 TCGTGGTGGCAACTGATAGG 59.751 55.000 3.27 0.00 37.61 2.57
3234 3417 1.359848 GTCGTGGTGGCAACTGATAG 58.640 55.000 3.27 0.00 37.61 2.08
3235 3418 0.389296 CGTCGTGGTGGCAACTGATA 60.389 55.000 3.27 0.00 37.61 2.15
3236 3419 1.667830 CGTCGTGGTGGCAACTGAT 60.668 57.895 3.27 0.00 37.61 2.90
3237 3420 2.279851 CGTCGTGGTGGCAACTGA 60.280 61.111 3.27 0.00 37.61 3.41
3238 3421 4.012895 GCGTCGTGGTGGCAACTG 62.013 66.667 3.27 0.00 37.61 3.16
3239 3422 3.825160 ATGCGTCGTGGTGGCAACT 62.825 57.895 3.27 0.00 40.49 3.16
3240 3423 1.570347 TAATGCGTCGTGGTGGCAAC 61.570 55.000 0.00 0.00 40.49 4.17
3241 3424 1.301795 TAATGCGTCGTGGTGGCAA 60.302 52.632 0.00 0.00 40.49 4.52
3242 3425 2.030401 GTAATGCGTCGTGGTGGCA 61.030 57.895 0.00 0.00 41.48 4.92
3243 3426 2.746803 GGTAATGCGTCGTGGTGGC 61.747 63.158 0.00 0.00 0.00 5.01
3244 3427 1.358725 CTGGTAATGCGTCGTGGTGG 61.359 60.000 0.00 0.00 0.00 4.61
3245 3428 1.966493 GCTGGTAATGCGTCGTGGTG 61.966 60.000 0.00 0.00 0.00 4.17
3246 3429 1.740296 GCTGGTAATGCGTCGTGGT 60.740 57.895 0.00 0.00 0.00 4.16
3247 3430 1.447838 AGCTGGTAATGCGTCGTGG 60.448 57.895 0.00 0.00 35.28 4.94
3248 3431 0.735978 TCAGCTGGTAATGCGTCGTG 60.736 55.000 15.13 0.00 35.28 4.35
3249 3432 0.458543 CTCAGCTGGTAATGCGTCGT 60.459 55.000 15.13 0.00 35.28 4.34
3250 3433 1.756375 GCTCAGCTGGTAATGCGTCG 61.756 60.000 15.13 0.00 35.28 5.12
3251 3434 0.460987 AGCTCAGCTGGTAATGCGTC 60.461 55.000 15.13 0.00 37.57 5.19
3252 3435 0.824109 TAGCTCAGCTGGTAATGCGT 59.176 50.000 10.31 4.44 40.10 5.24
3253 3436 1.594862 GTTAGCTCAGCTGGTAATGCG 59.405 52.381 10.31 0.00 40.10 4.73
3254 3437 1.943340 GGTTAGCTCAGCTGGTAATGC 59.057 52.381 10.31 10.66 40.10 3.56
3255 3438 2.939103 GTGGTTAGCTCAGCTGGTAATG 59.061 50.000 10.31 0.76 40.10 1.90
3256 3439 2.092914 GGTGGTTAGCTCAGCTGGTAAT 60.093 50.000 10.31 0.22 40.10 1.89
3257 3440 1.278127 GGTGGTTAGCTCAGCTGGTAA 59.722 52.381 10.31 6.92 40.10 2.85
3258 3441 0.902531 GGTGGTTAGCTCAGCTGGTA 59.097 55.000 10.31 0.31 40.10 3.25
3259 3442 0.838122 AGGTGGTTAGCTCAGCTGGT 60.838 55.000 10.31 1.37 40.84 4.00
3260 3443 1.195115 TAGGTGGTTAGCTCAGCTGG 58.805 55.000 10.31 5.82 42.12 4.85
3261 3444 3.550437 ATTAGGTGGTTAGCTCAGCTG 57.450 47.619 10.31 7.63 42.12 4.24
3262 3445 4.576330 AAATTAGGTGGTTAGCTCAGCT 57.424 40.909 3.60 3.60 44.03 4.24
3263 3446 4.459337 ACAAAATTAGGTGGTTAGCTCAGC 59.541 41.667 0.00 0.00 35.90 4.26
3264 3447 6.575162 AACAAAATTAGGTGGTTAGCTCAG 57.425 37.500 0.00 0.00 35.90 3.35
3265 3448 6.547880 TGAAACAAAATTAGGTGGTTAGCTCA 59.452 34.615 0.00 0.00 35.90 4.26
3266 3449 6.977213 TGAAACAAAATTAGGTGGTTAGCTC 58.023 36.000 0.00 0.00 35.90 4.09
3267 3450 6.969993 TGAAACAAAATTAGGTGGTTAGCT 57.030 33.333 0.00 0.00 38.41 3.32
3268 3451 8.495148 CAAATGAAACAAAATTAGGTGGTTAGC 58.505 33.333 0.00 0.00 0.00 3.09
3269 3452 9.541143 ACAAATGAAACAAAATTAGGTGGTTAG 57.459 29.630 0.00 0.00 0.00 2.34
3270 3453 9.319143 CACAAATGAAACAAAATTAGGTGGTTA 57.681 29.630 0.00 0.00 0.00 2.85
3271 3454 7.281999 CCACAAATGAAACAAAATTAGGTGGTT 59.718 33.333 0.00 0.00 37.00 3.67
3272 3455 6.765512 CCACAAATGAAACAAAATTAGGTGGT 59.234 34.615 0.00 0.00 37.00 4.16
3273 3456 6.204495 CCCACAAATGAAACAAAATTAGGTGG 59.796 38.462 0.00 0.00 39.12 4.61
3274 3457 6.765512 ACCCACAAATGAAACAAAATTAGGTG 59.234 34.615 0.00 0.00 0.00 4.00
3275 3458 6.894682 ACCCACAAATGAAACAAAATTAGGT 58.105 32.000 0.00 0.00 0.00 3.08
3276 3459 7.800155 AACCCACAAATGAAACAAAATTAGG 57.200 32.000 0.00 0.00 0.00 2.69
3281 3464 9.014297 ACAAATTAACCCACAAATGAAACAAAA 57.986 25.926 0.00 0.00 0.00 2.44
3282 3465 8.567285 ACAAATTAACCCACAAATGAAACAAA 57.433 26.923 0.00 0.00 0.00 2.83
3283 3466 9.838339 ATACAAATTAACCCACAAATGAAACAA 57.162 25.926 0.00 0.00 0.00 2.83
3284 3467 9.838339 AATACAAATTAACCCACAAATGAAACA 57.162 25.926 0.00 0.00 0.00 2.83
3291 3474 9.369672 AGGTAGAAATACAAATTAACCCACAAA 57.630 29.630 0.00 0.00 0.00 2.83
3292 3475 8.943594 AGGTAGAAATACAAATTAACCCACAA 57.056 30.769 0.00 0.00 0.00 3.33
3293 3476 8.943594 AAGGTAGAAATACAAATTAACCCACA 57.056 30.769 0.00 0.00 0.00 4.17
3308 3491 9.804758 CTCGTTCTCATTTACTAAGGTAGAAAT 57.195 33.333 0.00 0.00 0.00 2.17
3309 3492 9.017509 TCTCGTTCTCATTTACTAAGGTAGAAA 57.982 33.333 0.00 0.00 0.00 2.52
3310 3493 8.571461 TCTCGTTCTCATTTACTAAGGTAGAA 57.429 34.615 0.00 0.00 0.00 2.10
3311 3494 8.571461 TTCTCGTTCTCATTTACTAAGGTAGA 57.429 34.615 0.00 0.00 0.00 2.59
3312 3495 9.291664 CTTTCTCGTTCTCATTTACTAAGGTAG 57.708 37.037 0.00 0.00 0.00 3.18
3313 3496 9.017509 TCTTTCTCGTTCTCATTTACTAAGGTA 57.982 33.333 0.00 0.00 0.00 3.08
3314 3497 7.893658 TCTTTCTCGTTCTCATTTACTAAGGT 58.106 34.615 0.00 0.00 0.00 3.50
3315 3498 8.758633 TTCTTTCTCGTTCTCATTTACTAAGG 57.241 34.615 0.00 0.00 0.00 2.69
3317 3500 9.976511 TCTTTCTTTCTCGTTCTCATTTACTAA 57.023 29.630 0.00 0.00 0.00 2.24
3318 3501 9.408069 GTCTTTCTTTCTCGTTCTCATTTACTA 57.592 33.333 0.00 0.00 0.00 1.82
3319 3502 7.385478 GGTCTTTCTTTCTCGTTCTCATTTACT 59.615 37.037 0.00 0.00 0.00 2.24
3320 3503 7.170998 TGGTCTTTCTTTCTCGTTCTCATTTAC 59.829 37.037 0.00 0.00 0.00 2.01
3321 3504 7.170998 GTGGTCTTTCTTTCTCGTTCTCATTTA 59.829 37.037 0.00 0.00 0.00 1.40
3322 3505 6.017852 GTGGTCTTTCTTTCTCGTTCTCATTT 60.018 38.462 0.00 0.00 0.00 2.32
3323 3506 5.467063 GTGGTCTTTCTTTCTCGTTCTCATT 59.533 40.000 0.00 0.00 0.00 2.57
3324 3507 4.991687 GTGGTCTTTCTTTCTCGTTCTCAT 59.008 41.667 0.00 0.00 0.00 2.90
3325 3508 4.142026 TGTGGTCTTTCTTTCTCGTTCTCA 60.142 41.667 0.00 0.00 0.00 3.27
3326 3509 4.369182 TGTGGTCTTTCTTTCTCGTTCTC 58.631 43.478 0.00 0.00 0.00 2.87
3327 3510 4.402056 TGTGGTCTTTCTTTCTCGTTCT 57.598 40.909 0.00 0.00 0.00 3.01
3328 3511 4.331717 TGTTGTGGTCTTTCTTTCTCGTTC 59.668 41.667 0.00 0.00 0.00 3.95
3329 3512 4.094442 GTGTTGTGGTCTTTCTTTCTCGTT 59.906 41.667 0.00 0.00 0.00 3.85
3330 3513 3.621715 GTGTTGTGGTCTTTCTTTCTCGT 59.378 43.478 0.00 0.00 0.00 4.18
3331 3514 3.002348 GGTGTTGTGGTCTTTCTTTCTCG 59.998 47.826 0.00 0.00 0.00 4.04
3332 3515 4.200092 AGGTGTTGTGGTCTTTCTTTCTC 58.800 43.478 0.00 0.00 0.00 2.87
3333 3516 4.236527 AGGTGTTGTGGTCTTTCTTTCT 57.763 40.909 0.00 0.00 0.00 2.52
3334 3517 4.983671 AAGGTGTTGTGGTCTTTCTTTC 57.016 40.909 0.00 0.00 0.00 2.62
3335 3518 4.770010 TCAAAGGTGTTGTGGTCTTTCTTT 59.230 37.500 0.00 0.00 0.00 2.52
3336 3519 4.340617 TCAAAGGTGTTGTGGTCTTTCTT 58.659 39.130 0.00 0.00 0.00 2.52
3337 3520 3.963129 TCAAAGGTGTTGTGGTCTTTCT 58.037 40.909 0.00 0.00 0.00 2.52
3338 3521 4.338118 TCATCAAAGGTGTTGTGGTCTTTC 59.662 41.667 0.00 0.00 0.00 2.62
3339 3522 4.277476 TCATCAAAGGTGTTGTGGTCTTT 58.723 39.130 0.00 0.00 0.00 2.52
3340 3523 3.885297 CTCATCAAAGGTGTTGTGGTCTT 59.115 43.478 0.00 0.00 0.00 3.01
3341 3524 3.480470 CTCATCAAAGGTGTTGTGGTCT 58.520 45.455 0.00 0.00 0.00 3.85
3342 3525 2.554032 CCTCATCAAAGGTGTTGTGGTC 59.446 50.000 0.00 0.00 35.07 4.02
3343 3526 2.174639 TCCTCATCAAAGGTGTTGTGGT 59.825 45.455 6.03 0.00 38.45 4.16
3344 3527 2.816087 CTCCTCATCAAAGGTGTTGTGG 59.184 50.000 0.00 0.00 38.57 4.17
3345 3528 3.499918 GTCTCCTCATCAAAGGTGTTGTG 59.500 47.826 0.00 0.00 37.69 3.33
3346 3529 3.136443 TGTCTCCTCATCAAAGGTGTTGT 59.864 43.478 0.00 0.00 37.69 3.32
3347 3530 3.743521 TGTCTCCTCATCAAAGGTGTTG 58.256 45.455 0.00 0.00 37.69 3.33
3348 3531 4.437682 TTGTCTCCTCATCAAAGGTGTT 57.562 40.909 0.00 0.00 37.69 3.32
3349 3532 4.437682 TTTGTCTCCTCATCAAAGGTGT 57.562 40.909 0.00 0.00 37.69 4.16
3350 3533 4.022849 GGTTTTGTCTCCTCATCAAAGGTG 60.023 45.833 0.00 0.00 37.69 4.00
3351 3534 4.145052 GGTTTTGTCTCCTCATCAAAGGT 58.855 43.478 0.00 0.00 37.69 3.50
3352 3535 4.144297 TGGTTTTGTCTCCTCATCAAAGG 58.856 43.478 0.00 0.00 37.81 3.11
3353 3536 5.972107 ATGGTTTTGTCTCCTCATCAAAG 57.028 39.130 0.00 0.00 33.61 2.77
3354 3537 6.514947 CAAATGGTTTTGTCTCCTCATCAAA 58.485 36.000 0.00 0.00 37.92 2.69
3355 3538 5.509501 GCAAATGGTTTTGTCTCCTCATCAA 60.510 40.000 0.97 0.00 43.43 2.57
3356 3539 4.022068 GCAAATGGTTTTGTCTCCTCATCA 60.022 41.667 0.97 0.00 43.43 3.07
3357 3540 4.219288 AGCAAATGGTTTTGTCTCCTCATC 59.781 41.667 0.97 0.00 43.43 2.92
3358 3541 4.154942 AGCAAATGGTTTTGTCTCCTCAT 58.845 39.130 0.97 0.00 43.43 2.90
3359 3542 3.565307 AGCAAATGGTTTTGTCTCCTCA 58.435 40.909 0.97 0.00 43.43 3.86
3360 3543 4.166187 GAGCAAATGGTTTTGTCTCCTC 57.834 45.455 9.65 2.10 43.43 3.71
3362 3545 3.303881 GGAGCAAATGGTTTTGTCTCC 57.696 47.619 17.73 17.73 46.51 3.71
3363 3546 4.202151 ACTTGGAGCAAATGGTTTTGTCTC 60.202 41.667 11.22 11.22 43.43 3.36
3364 3547 3.706086 ACTTGGAGCAAATGGTTTTGTCT 59.294 39.130 0.97 0.00 43.43 3.41
3365 3548 4.058721 ACTTGGAGCAAATGGTTTTGTC 57.941 40.909 0.97 0.00 43.43 3.18
3366 3549 4.486125 AACTTGGAGCAAATGGTTTTGT 57.514 36.364 0.97 0.00 43.43 2.83
3367 3550 5.816449 AAAACTTGGAGCAAATGGTTTTG 57.184 34.783 0.00 0.00 44.18 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.