Multiple sequence alignment - TraesCS4B01G089400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G089400 chr4B 100.000 8621 0 0 1 8621 90719301 90727921 0.000000e+00 15921.0
1 TraesCS4B01G089400 chr4B 99.394 2806 17 0 4420 7225 5372865 5375670 0.000000e+00 5088.0
2 TraesCS4B01G089400 chr4B 99.394 2806 17 0 4420 7225 322670138 322672943 0.000000e+00 5088.0
3 TraesCS4B01G089400 chr4B 83.133 83 10 1 670 752 618324403 618324481 1.200000e-08 73.1
4 TraesCS4B01G089400 chr4B 88.136 59 7 0 695 753 7829510 7829452 4.320000e-08 71.3
5 TraesCS4B01G089400 chr1A 99.430 2808 16 0 4418 7225 517045158 517047965 0.000000e+00 5097.0
6 TraesCS4B01G089400 chr1A 91.346 104 8 1 2183 2285 154014154 154014257 3.240000e-29 141.0
7 TraesCS4B01G089400 chr1A 100.000 28 0 0 726 753 293708612 293708585 1.600000e-02 52.8
8 TraesCS4B01G089400 chr1B 99.500 2799 14 0 4427 7225 69840621 69843419 0.000000e+00 5092.0
9 TraesCS4B01G089400 chr1B 90.741 54 4 1 700 752 151091125 151091072 4.320000e-08 71.3
10 TraesCS4B01G089400 chr3B 99.394 2807 16 1 4420 7225 695915041 695917847 0.000000e+00 5088.0
11 TraesCS4B01G089400 chr3B 85.385 130 11 6 2160 2285 830367486 830367611 2.530000e-25 128.0
12 TraesCS4B01G089400 chr3B 85.385 130 11 6 2160 2285 830656302 830656427 2.530000e-25 128.0
13 TraesCS4B01G089400 chr3B 96.000 50 2 0 710 759 788510132 788510181 1.990000e-11 82.4
14 TraesCS4B01G089400 chr2A 99.359 2807 17 1 4420 7225 676079639 676076833 0.000000e+00 5083.0
15 TraesCS4B01G089400 chr2A 99.394 2804 16 1 4422 7225 748456865 748454063 0.000000e+00 5083.0
16 TraesCS4B01G089400 chr2A 99.080 2827 21 4 4401 7225 575680375 575683198 0.000000e+00 5072.0
17 TraesCS4B01G089400 chr5A 99.323 2807 19 0 4419 7225 259069719 259066913 0.000000e+00 5079.0
18 TraesCS4B01G089400 chr5A 92.638 163 12 0 2348 2510 320214244 320214406 1.450000e-57 235.0
19 TraesCS4B01G089400 chr5A 94.681 94 5 0 2191 2284 526875400 526875307 6.970000e-31 147.0
20 TraesCS4B01G089400 chr4D 94.799 1942 65 17 2508 4420 61960925 61958991 0.000000e+00 2994.0
21 TraesCS4B01G089400 chr4D 95.711 1399 43 5 7237 8621 61959008 61957613 0.000000e+00 2235.0
22 TraesCS4B01G089400 chr4D 94.474 941 34 11 815 1742 61971249 61970314 0.000000e+00 1434.0
23 TraesCS4B01G089400 chr4D 90.984 366 21 4 1737 2102 61961621 61961268 4.680000e-132 483.0
24 TraesCS4B01G089400 chr4D 92.058 277 21 1 1 277 61985973 61985698 1.050000e-103 388.0
25 TraesCS4B01G089400 chr4D 88.379 327 31 6 274 596 61971842 61971519 3.770000e-103 387.0
26 TraesCS4B01G089400 chr4D 92.638 163 12 0 2347 2509 63049238 63049400 1.450000e-57 235.0
27 TraesCS4B01G089400 chr4D 100.000 77 0 0 2273 2349 61961000 61960924 9.020000e-30 143.0
28 TraesCS4B01G089400 chr4D 95.556 45 2 0 709 753 490284716 490284760 1.200000e-08 73.1
29 TraesCS4B01G089400 chr4A 94.127 1941 78 22 2508 4420 535246995 535245063 0.000000e+00 2920.0
30 TraesCS4B01G089400 chr4A 95.207 1398 48 6 7237 8621 535245080 535243689 0.000000e+00 2193.0
31 TraesCS4B01G089400 chr4A 93.391 1392 51 23 751 2121 535248567 535247196 0.000000e+00 2023.0
32 TraesCS4B01G089400 chr4A 88.442 398 40 6 274 668 535248961 535248567 7.830000e-130 475.0
33 TraesCS4B01G089400 chr4A 92.419 277 20 1 1 277 535249866 535249591 2.260000e-105 394.0
34 TraesCS4B01G089400 chr4A 98.701 77 1 0 2273 2349 535247070 535246994 4.200000e-28 137.0
35 TraesCS4B01G089400 chr4A 95.312 64 3 0 2126 2189 535247132 535247069 1.530000e-17 102.0
36 TraesCS4B01G089400 chr4A 89.286 56 5 1 699 753 599895100 599895045 1.550000e-07 69.4
37 TraesCS4B01G089400 chr3D 93.827 162 10 0 2348 2509 87926000 87926161 2.400000e-60 244.0
38 TraesCS4B01G089400 chr3D 92.638 163 12 0 2348 2510 386609717 386609555 1.450000e-57 235.0
39 TraesCS4B01G089400 chr6D 92.262 168 11 2 2343 2510 431160664 431160829 4.020000e-58 237.0
40 TraesCS4B01G089400 chr6D 92.683 164 11 1 2348 2510 97265797 97265960 1.450000e-57 235.0
41 TraesCS4B01G089400 chr6D 90.857 175 15 1 2335 2509 423084149 423084322 5.200000e-57 233.0
42 TraesCS4B01G089400 chr6D 86.667 60 7 1 709 768 302252246 302252188 2.010000e-06 65.8
43 TraesCS4B01G089400 chr5B 92.593 162 12 0 2348 2509 472754682 472754843 5.200000e-57 233.0
44 TraesCS4B01G089400 chr5B 93.069 101 6 1 2184 2284 532360014 532359915 6.970000e-31 147.0
45 TraesCS4B01G089400 chr5B 88.889 54 5 1 700 752 636986303 636986250 2.010000e-06 65.8
46 TraesCS4B01G089400 chr5D 90.741 162 15 0 2345 2506 314421987 314422148 5.240000e-52 217.0
47 TraesCS4B01G089400 chr3A 95.652 92 4 0 2190 2281 489193170 489193079 1.940000e-31 148.0
48 TraesCS4B01G089400 chr7B 94.681 94 5 0 2190 2283 639796284 639796191 6.970000e-31 147.0
49 TraesCS4B01G089400 chr6A 92.157 102 7 1 2186 2287 407093157 407093057 9.020000e-30 143.0
50 TraesCS4B01G089400 chr1D 88.496 113 10 3 2189 2299 209139275 209139386 5.430000e-27 134.0
51 TraesCS4B01G089400 chr2B 95.455 44 2 0 709 752 248147312 248147355 4.320000e-08 71.3
52 TraesCS4B01G089400 chr6B 100.000 28 0 0 726 753 37637834 37637807 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G089400 chr4B 90719301 90727921 8620 False 15921.000000 15921 100.000000 1 8621 1 chr4B.!!$F2 8620
1 TraesCS4B01G089400 chr4B 5372865 5375670 2805 False 5088.000000 5088 99.394000 4420 7225 1 chr4B.!!$F1 2805
2 TraesCS4B01G089400 chr4B 322670138 322672943 2805 False 5088.000000 5088 99.394000 4420 7225 1 chr4B.!!$F3 2805
3 TraesCS4B01G089400 chr1A 517045158 517047965 2807 False 5097.000000 5097 99.430000 4418 7225 1 chr1A.!!$F2 2807
4 TraesCS4B01G089400 chr1B 69840621 69843419 2798 False 5092.000000 5092 99.500000 4427 7225 1 chr1B.!!$F1 2798
5 TraesCS4B01G089400 chr3B 695915041 695917847 2806 False 5088.000000 5088 99.394000 4420 7225 1 chr3B.!!$F1 2805
6 TraesCS4B01G089400 chr2A 676076833 676079639 2806 True 5083.000000 5083 99.359000 4420 7225 1 chr2A.!!$R1 2805
7 TraesCS4B01G089400 chr2A 748454063 748456865 2802 True 5083.000000 5083 99.394000 4422 7225 1 chr2A.!!$R2 2803
8 TraesCS4B01G089400 chr2A 575680375 575683198 2823 False 5072.000000 5072 99.080000 4401 7225 1 chr2A.!!$F1 2824
9 TraesCS4B01G089400 chr5A 259066913 259069719 2806 True 5079.000000 5079 99.323000 4419 7225 1 chr5A.!!$R1 2806
10 TraesCS4B01G089400 chr4D 61957613 61961621 4008 True 1463.750000 2994 95.373500 1737 8621 4 chr4D.!!$R2 6884
11 TraesCS4B01G089400 chr4D 61970314 61971842 1528 True 910.500000 1434 91.426500 274 1742 2 chr4D.!!$R3 1468
12 TraesCS4B01G089400 chr4A 535243689 535249866 6177 True 1177.714286 2920 93.942714 1 8621 7 chr4A.!!$R2 8620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 1350 0.676466 CCAAGCTTGTGCCGGATACA 60.676 55.000 24.35 6.78 40.80 2.29 F
717 1354 1.065491 AGCTTGTGCCGGATACATTCA 60.065 47.619 5.05 0.00 40.80 2.57 F
946 1758 1.074248 GCGACAGGGAGGGGAAAAA 59.926 57.895 0.00 0.00 0.00 1.94 F
2362 3369 0.252103 TTGCTACTCCCTCCGTTCCT 60.252 55.000 0.00 0.00 0.00 3.36 F
2363 3370 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94 F
3533 4569 0.481128 ATCCCAACCCGTCCAAAACT 59.519 50.000 0.00 0.00 0.00 2.66 F
4415 5456 0.665298 TGCGCATGTGTTTTACTGCA 59.335 45.000 5.66 0.00 34.91 4.41 F
4630 5672 0.682852 TGTCAAAATCGGTCGACCCT 59.317 50.000 28.52 13.68 0.00 4.34 F
5780 6823 2.951229 TCCCCCTTGTTCTTGAAGAC 57.049 50.000 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2774 0.764271 AAAATGGGCCCCAAGTGTTG 59.236 50.000 22.27 0.00 36.95 3.33 R
2050 2875 1.510623 CTTGCTTGCGTCGTCATGC 60.511 57.895 15.53 15.53 37.56 4.06 R
2493 3500 3.383698 TCTGATACTCCCTCCGTTTCT 57.616 47.619 0.00 0.00 0.00 2.52 R
3490 4526 1.066645 CCCGTACTTGAACACCCCTAC 60.067 57.143 0.00 0.00 0.00 3.18 R
3881 4917 1.127951 CGTTTCGGATTTTCAGGACCG 59.872 52.381 0.00 0.00 45.61 4.79 R
4630 5672 1.556911 GGAGAATGTCAAGAGAGGGCA 59.443 52.381 0.00 0.00 0.00 5.36 R
6198 7241 0.392595 GGTTAGGCACGAAGGAAGGG 60.393 60.000 0.00 0.00 0.00 3.95 R
6551 7594 2.356667 GGTGGAAGCTCAAGGGGG 59.643 66.667 0.00 0.00 0.00 5.40 R
7629 8685 0.178998 AATAGCAGCAGCCATCTGGG 60.179 55.000 0.00 0.00 43.56 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.428852 AGCTAAATGGTTTTGGTAACTTGAAAT 58.571 29.630 0.00 0.00 37.61 2.17
44 45 8.432110 AATGGTTTTGGTAACTTGAAATTGAC 57.568 30.769 0.00 0.00 37.61 3.18
59 60 5.945784 TGAAATTGACGAAGGAATCTGGATT 59.054 36.000 0.00 0.00 0.00 3.01
102 103 2.991190 GTGAGTGGCAAATGCATTTCTG 59.009 45.455 21.70 13.73 44.36 3.02
148 149 2.118294 AGTTTTGGGGCAGCCTCC 59.882 61.111 9.53 10.54 0.00 4.30
205 206 2.043953 GGTTGGGTGATGGGAGGC 60.044 66.667 0.00 0.00 0.00 4.70
220 221 1.073284 GGAGGCACACTAGGTTTTGGA 59.927 52.381 0.00 0.00 0.00 3.53
261 262 4.788617 TCCAAACCTCTAAAGAAGGCCTAT 59.211 41.667 5.16 0.00 0.00 2.57
267 268 4.221924 CCTCTAAAGAAGGCCTATCCTAGC 59.778 50.000 5.16 0.00 46.94 3.42
277 278 4.778427 AGGCCTATCCTAGCTTATACAACC 59.222 45.833 1.29 0.00 45.41 3.77
293 927 9.760077 CTTATACAACCGGATAGTTTACTGATT 57.240 33.333 9.46 0.00 0.00 2.57
349 986 6.266131 ACTGATGCTAGGGGAAAATAATCA 57.734 37.500 0.00 0.00 0.00 2.57
374 1011 3.631686 CGGGTGGCAAATGAAATCTATCA 59.368 43.478 0.00 0.00 0.00 2.15
408 1045 0.687354 GGAGACCAGGAGTGCAAAGA 59.313 55.000 0.00 0.00 0.00 2.52
409 1046 1.280421 GGAGACCAGGAGTGCAAAGAT 59.720 52.381 0.00 0.00 0.00 2.40
420 1057 4.301628 GAGTGCAAAGATTGGAAAACTGG 58.698 43.478 0.00 0.00 30.97 4.00
481 1118 3.507622 CGATGATGGATGTGAGCTACCTA 59.492 47.826 0.00 0.00 0.00 3.08
490 1127 7.238710 TGGATGTGAGCTACCTATGTATCTTA 58.761 38.462 0.00 0.00 0.00 2.10
491 1128 7.176865 TGGATGTGAGCTACCTATGTATCTTAC 59.823 40.741 0.00 0.00 33.00 2.34
503 1140 5.599999 ATGTATCTTACCTTCTTCAGCGT 57.400 39.130 0.00 0.00 0.00 5.07
514 1151 6.228258 ACCTTCTTCAGCGTTTTATGTCTAA 58.772 36.000 0.00 0.00 0.00 2.10
515 1152 6.879458 ACCTTCTTCAGCGTTTTATGTCTAAT 59.121 34.615 0.00 0.00 0.00 1.73
516 1153 7.148407 ACCTTCTTCAGCGTTTTATGTCTAATG 60.148 37.037 0.00 0.00 0.00 1.90
517 1154 6.106877 TCTTCAGCGTTTTATGTCTAATGC 57.893 37.500 0.00 0.00 36.71 3.56
562 1199 4.511617 TGTTTATTGCTTTCAATCCGCA 57.488 36.364 0.00 0.00 41.68 5.69
617 1254 5.407387 TCTGTTATGTCGTCTAAACCTTTGC 59.593 40.000 0.00 0.00 0.00 3.68
622 1259 4.695396 TGTCGTCTAAACCTTTGCACTTA 58.305 39.130 0.00 0.00 0.00 2.24
657 1294 9.298250 CTGGTAGATTAAGTATGTTCTAGCCTA 57.702 37.037 7.78 0.00 38.03 3.93
667 1304 8.256356 AGTATGTTCTAGCCTAGATTTGTGAT 57.744 34.615 1.50 0.00 34.22 3.06
668 1305 8.147058 AGTATGTTCTAGCCTAGATTTGTGATG 58.853 37.037 1.50 0.00 34.22 3.07
669 1306 5.118990 TGTTCTAGCCTAGATTTGTGATGC 58.881 41.667 1.50 0.00 34.22 3.91
670 1307 5.104776 TGTTCTAGCCTAGATTTGTGATGCT 60.105 40.000 1.50 0.00 34.22 3.79
671 1308 5.207110 TCTAGCCTAGATTTGTGATGCTC 57.793 43.478 0.00 0.00 0.00 4.26
672 1309 4.898265 TCTAGCCTAGATTTGTGATGCTCT 59.102 41.667 0.00 0.00 0.00 4.09
673 1310 4.070630 AGCCTAGATTTGTGATGCTCTC 57.929 45.455 0.00 0.00 0.00 3.20
674 1311 3.710677 AGCCTAGATTTGTGATGCTCTCT 59.289 43.478 0.00 0.00 0.00 3.10
675 1312 4.163839 AGCCTAGATTTGTGATGCTCTCTT 59.836 41.667 0.00 0.00 0.00 2.85
676 1313 4.511082 GCCTAGATTTGTGATGCTCTCTTC 59.489 45.833 0.00 0.00 0.00 2.87
677 1314 4.744137 CCTAGATTTGTGATGCTCTCTTCG 59.256 45.833 0.00 0.00 0.00 3.79
678 1315 4.199432 AGATTTGTGATGCTCTCTTCGT 57.801 40.909 0.00 0.00 0.00 3.85
679 1316 4.180057 AGATTTGTGATGCTCTCTTCGTC 58.820 43.478 0.00 0.00 0.00 4.20
680 1317 1.982612 TTGTGATGCTCTCTTCGTCG 58.017 50.000 0.00 0.00 0.00 5.12
681 1318 1.165270 TGTGATGCTCTCTTCGTCGA 58.835 50.000 0.00 0.00 0.00 4.20
682 1319 1.539827 TGTGATGCTCTCTTCGTCGAA 59.460 47.619 7.57 7.57 0.00 3.71
683 1320 2.030274 TGTGATGCTCTCTTCGTCGAAA 60.030 45.455 9.30 0.00 0.00 3.46
684 1321 2.987149 GTGATGCTCTCTTCGTCGAAAA 59.013 45.455 9.30 0.00 0.00 2.29
685 1322 3.428870 GTGATGCTCTCTTCGTCGAAAAA 59.571 43.478 9.30 0.00 0.00 1.94
704 1341 3.525268 AAAACTTGTCCCAAGCTTGTG 57.475 42.857 24.35 14.31 0.00 3.33
705 1342 0.746659 AACTTGTCCCAAGCTTGTGC 59.253 50.000 24.35 14.05 40.05 4.57
706 1343 1.109323 ACTTGTCCCAAGCTTGTGCC 61.109 55.000 24.35 11.81 40.80 5.01
707 1344 2.133742 CTTGTCCCAAGCTTGTGCCG 62.134 60.000 24.35 9.39 40.80 5.69
708 1345 3.365265 GTCCCAAGCTTGTGCCGG 61.365 66.667 24.35 17.77 40.80 6.13
709 1346 3.565214 TCCCAAGCTTGTGCCGGA 61.565 61.111 24.35 19.68 40.80 5.14
710 1347 2.361610 CCCAAGCTTGTGCCGGAT 60.362 61.111 24.35 0.00 40.80 4.18
711 1348 1.077787 CCCAAGCTTGTGCCGGATA 60.078 57.895 24.35 0.00 40.80 2.59
712 1349 1.376609 CCCAAGCTTGTGCCGGATAC 61.377 60.000 24.35 3.50 40.80 2.24
713 1350 0.676466 CCAAGCTTGTGCCGGATACA 60.676 55.000 24.35 6.78 40.80 2.29
714 1351 1.382522 CAAGCTTGTGCCGGATACAT 58.617 50.000 18.65 0.00 40.80 2.29
715 1352 1.745087 CAAGCTTGTGCCGGATACATT 59.255 47.619 18.65 0.00 40.80 2.71
716 1353 1.668419 AGCTTGTGCCGGATACATTC 58.332 50.000 5.05 4.54 40.80 2.67
717 1354 1.065491 AGCTTGTGCCGGATACATTCA 60.065 47.619 5.05 0.00 40.80 2.57
718 1355 1.949525 GCTTGTGCCGGATACATTCAT 59.050 47.619 5.05 0.00 0.00 2.57
719 1356 2.358898 GCTTGTGCCGGATACATTCATT 59.641 45.455 5.05 0.00 0.00 2.57
720 1357 3.181487 GCTTGTGCCGGATACATTCATTT 60.181 43.478 5.05 0.00 0.00 2.32
721 1358 4.353737 CTTGTGCCGGATACATTCATTTG 58.646 43.478 5.05 0.00 0.00 2.32
722 1359 3.615155 TGTGCCGGATACATTCATTTGA 58.385 40.909 5.05 0.00 0.00 2.69
723 1360 3.627123 TGTGCCGGATACATTCATTTGAG 59.373 43.478 5.05 0.00 0.00 3.02
724 1361 3.876914 GTGCCGGATACATTCATTTGAGA 59.123 43.478 5.05 0.00 0.00 3.27
725 1362 4.024556 GTGCCGGATACATTCATTTGAGAG 60.025 45.833 5.05 0.00 0.00 3.20
726 1363 4.141733 TGCCGGATACATTCATTTGAGAGA 60.142 41.667 5.05 0.00 0.00 3.10
727 1364 4.212214 GCCGGATACATTCATTTGAGAGAC 59.788 45.833 5.05 0.00 0.00 3.36
728 1365 5.359756 CCGGATACATTCATTTGAGAGACA 58.640 41.667 0.00 0.00 0.00 3.41
729 1366 5.817296 CCGGATACATTCATTTGAGAGACAA 59.183 40.000 0.00 0.00 36.65 3.18
741 1378 5.479716 TTGAGAGACAAACTTTTTCGGAC 57.520 39.130 0.00 0.00 35.39 4.79
742 1379 3.554324 TGAGAGACAAACTTTTTCGGACG 59.446 43.478 0.00 0.00 0.00 4.79
743 1380 2.870411 AGAGACAAACTTTTTCGGACGG 59.130 45.455 0.00 0.00 0.00 4.79
744 1381 2.867975 GAGACAAACTTTTTCGGACGGA 59.132 45.455 0.00 0.00 0.00 4.69
745 1382 2.870411 AGACAAACTTTTTCGGACGGAG 59.130 45.455 0.00 0.00 0.00 4.63
746 1383 1.944709 ACAAACTTTTTCGGACGGAGG 59.055 47.619 0.00 0.00 0.00 4.30
747 1384 2.215196 CAAACTTTTTCGGACGGAGGA 58.785 47.619 0.00 0.00 0.00 3.71
748 1385 2.614983 CAAACTTTTTCGGACGGAGGAA 59.385 45.455 0.00 0.00 0.00 3.36
749 1386 2.165319 ACTTTTTCGGACGGAGGAAG 57.835 50.000 0.00 6.14 0.00 3.46
760 1397 4.616143 CGGACGGAGGAAGTATATGATGTG 60.616 50.000 0.00 0.00 0.00 3.21
781 1418 6.971602 TGTGCTTTTGATGGTTTCGTTAATA 58.028 32.000 0.00 0.00 0.00 0.98
788 1425 9.894783 TTTTGATGGTTTCGTTAATAAAATCGA 57.105 25.926 0.00 0.00 0.00 3.59
792 1429 6.844254 TGGTTTCGTTAATAAAATCGAAGGG 58.156 36.000 0.00 0.00 41.85 3.95
797 1435 4.274214 CGTTAATAAAATCGAAGGGACCCC 59.726 45.833 7.00 1.17 0.00 4.95
811 1450 5.348259 AGGGACCCCTCTTTTGATTAAAA 57.652 39.130 7.00 0.00 44.43 1.52
812 1451 5.722290 AGGGACCCCTCTTTTGATTAAAAA 58.278 37.500 7.00 0.00 44.43 1.94
883 1690 3.727387 CCCCAACGGGTCATCTCT 58.273 61.111 0.00 0.00 45.50 3.10
894 1701 2.676748 GGTCATCTCTGATCAGACCCT 58.323 52.381 21.67 6.24 42.21 4.34
945 1757 2.754375 GCGACAGGGAGGGGAAAA 59.246 61.111 0.00 0.00 0.00 2.29
946 1758 1.074248 GCGACAGGGAGGGGAAAAA 59.926 57.895 0.00 0.00 0.00 1.94
1187 2006 1.196012 CTCCCCCTTCCTGTACAGTC 58.804 60.000 21.18 0.00 0.00 3.51
1269 2090 3.025619 GCTGATTGATTCGGCGGG 58.974 61.111 7.21 0.00 46.38 6.13
1296 2118 1.303309 ACTTGAGCGCCATATGCTTC 58.697 50.000 2.29 0.00 44.18 3.86
1377 2199 2.294074 CTGTCCTCCACGGTTCAAAAA 58.706 47.619 0.00 0.00 0.00 1.94
1470 2293 1.204146 CAGGGCTAGGGTTTGCTCTA 58.796 55.000 0.00 0.00 38.03 2.43
1554 2379 8.875168 ACACAAATTTCTTAATGGGGATGTTTA 58.125 29.630 0.00 0.00 0.00 2.01
1590 2415 7.224557 GGATAATTTTGTTTTAATGCATCGGCT 59.775 33.333 0.00 0.00 41.91 5.52
1624 2449 4.634012 ACTTATGGCTTGTCAAGTGGTA 57.366 40.909 14.03 2.39 30.28 3.25
1664 2489 4.402155 GGATGTATGACAATTTGGCTTCCA 59.598 41.667 3.47 0.00 0.00 3.53
1794 2619 9.007901 CCACTTGAACTCTGAGAATTTAAGATT 57.992 33.333 13.85 0.00 0.00 2.40
1825 2650 5.392703 CCAAGACATTCACATCATCACAAGG 60.393 44.000 0.00 0.00 0.00 3.61
1869 2694 8.166061 AGCTAAAATATCATTAAGGCAGGATCA 58.834 33.333 0.00 0.00 0.00 2.92
1983 2808 6.148948 GGCCCATTTTAAAATTTTGAGCAAC 58.851 36.000 13.76 0.00 0.00 4.17
2059 2884 5.404366 TGTGTAAAGAAGTAAGCATGACGAC 59.596 40.000 0.00 0.00 0.00 4.34
2128 3135 8.723942 AATAACACTTCAGTAATTCTGCTAGG 57.276 34.615 0.00 0.00 43.32 3.02
2145 3152 5.940617 TGCTAGGTATGCCATACTCAATTT 58.059 37.500 14.18 0.00 36.04 1.82
2196 3203 7.923414 AATTCTGAAAGTTATGTGTACTCCC 57.077 36.000 0.00 0.00 33.76 4.30
2197 3204 6.681729 TTCTGAAAGTTATGTGTACTCCCT 57.318 37.500 0.00 0.00 33.76 4.20
2198 3205 6.282199 TCTGAAAGTTATGTGTACTCCCTC 57.718 41.667 0.00 0.00 33.76 4.30
2199 3206 6.017192 TCTGAAAGTTATGTGTACTCCCTCT 58.983 40.000 0.00 0.00 33.76 3.69
2200 3207 7.179966 TCTGAAAGTTATGTGTACTCCCTCTA 58.820 38.462 0.00 0.00 33.76 2.43
2201 3208 7.839705 TCTGAAAGTTATGTGTACTCCCTCTAT 59.160 37.037 0.00 0.00 33.76 1.98
2202 3209 9.132923 CTGAAAGTTATGTGTACTCCCTCTATA 57.867 37.037 0.00 0.00 0.00 1.31
2203 3210 9.483489 TGAAAGTTATGTGTACTCCCTCTATAA 57.517 33.333 0.00 0.00 0.00 0.98
2206 3213 9.710818 AAGTTATGTGTACTCCCTCTATAAAGA 57.289 33.333 0.00 0.00 0.00 2.52
2207 3214 9.710818 AGTTATGTGTACTCCCTCTATAAAGAA 57.289 33.333 0.00 0.00 0.00 2.52
2218 3225 9.796120 CTCCCTCTATAAAGAAATATAAGAGCG 57.204 37.037 0.00 0.00 0.00 5.03
2219 3226 9.310449 TCCCTCTATAAAGAAATATAAGAGCGT 57.690 33.333 0.00 0.00 0.00 5.07
2220 3227 9.930693 CCCTCTATAAAGAAATATAAGAGCGTT 57.069 33.333 0.00 0.00 0.00 4.84
2236 3243 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2237 3244 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2251 3258 7.216973 ACTAAAGTAGTGATCGAAACACTCT 57.783 36.000 24.56 19.16 45.58 3.24
2252 3259 7.659186 ACTAAAGTAGTGATCGAAACACTCTT 58.341 34.615 24.56 22.15 45.58 2.85
2253 3260 8.790718 ACTAAAGTAGTGATCGAAACACTCTTA 58.209 33.333 24.56 19.21 45.58 2.10
2254 3261 9.790389 CTAAAGTAGTGATCGAAACACTCTTAT 57.210 33.333 24.56 18.56 45.58 1.73
2261 3268 9.877178 AGTGATCGAAACACTCTTATATTTCTT 57.123 29.630 18.47 0.00 43.84 2.52
2266 3273 9.079833 TCGAAACACTCTTATATTTCTTTACGG 57.920 33.333 0.00 0.00 0.00 4.02
2267 3274 9.079833 CGAAACACTCTTATATTTCTTTACGGA 57.920 33.333 0.00 0.00 0.00 4.69
2269 3276 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
2270 3277 7.498443 ACACTCTTATATTTCTTTACGGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
2271 3278 7.343833 ACACTCTTATATTTCTTTACGGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
2348 3355 3.780804 TTGCTCCCTTGTAGTTTGCTA 57.219 42.857 0.00 0.00 0.00 3.49
2349 3356 3.053831 TGCTCCCTTGTAGTTTGCTAC 57.946 47.619 0.00 0.00 45.85 3.58
2350 3357 2.637872 TGCTCCCTTGTAGTTTGCTACT 59.362 45.455 6.37 0.00 45.84 2.57
2351 3358 3.263261 GCTCCCTTGTAGTTTGCTACTC 58.737 50.000 6.37 0.00 45.84 2.59
2352 3359 3.863041 CTCCCTTGTAGTTTGCTACTCC 58.137 50.000 6.37 0.00 45.84 3.85
2353 3360 2.570302 TCCCTTGTAGTTTGCTACTCCC 59.430 50.000 6.37 0.00 45.84 4.30
2354 3361 2.572104 CCCTTGTAGTTTGCTACTCCCT 59.428 50.000 6.37 0.00 45.84 4.20
2355 3362 3.369576 CCCTTGTAGTTTGCTACTCCCTC 60.370 52.174 6.37 0.00 45.84 4.30
2356 3363 3.369576 CCTTGTAGTTTGCTACTCCCTCC 60.370 52.174 6.37 0.00 45.84 4.30
2357 3364 1.822990 TGTAGTTTGCTACTCCCTCCG 59.177 52.381 6.37 0.00 45.84 4.63
2358 3365 1.823610 GTAGTTTGCTACTCCCTCCGT 59.176 52.381 0.00 0.00 43.14 4.69
2359 3366 1.349067 AGTTTGCTACTCCCTCCGTT 58.651 50.000 0.00 0.00 28.23 4.44
2360 3367 1.275573 AGTTTGCTACTCCCTCCGTTC 59.724 52.381 0.00 0.00 28.23 3.95
2361 3368 0.611714 TTTGCTACTCCCTCCGTTCC 59.388 55.000 0.00 0.00 0.00 3.62
2362 3369 0.252103 TTGCTACTCCCTCCGTTCCT 60.252 55.000 0.00 0.00 0.00 3.36
2363 3370 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94
2364 3371 1.006281 TGCTACTCCCTCCGTTCCTAA 59.994 52.381 0.00 0.00 0.00 2.69
2365 3372 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
2366 3373 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
2367 3374 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
2368 3375 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
2369 3376 4.957684 ACTCCCTCCGTTCCTAAATATG 57.042 45.455 0.00 0.00 0.00 1.78
2370 3377 4.553678 ACTCCCTCCGTTCCTAAATATGA 58.446 43.478 0.00 0.00 0.00 2.15
2371 3378 4.589374 ACTCCCTCCGTTCCTAAATATGAG 59.411 45.833 0.00 0.00 0.00 2.90
2372 3379 4.553678 TCCCTCCGTTCCTAAATATGAGT 58.446 43.478 0.00 0.00 0.00 3.41
2373 3380 4.587684 TCCCTCCGTTCCTAAATATGAGTC 59.412 45.833 0.00 0.00 0.00 3.36
2374 3381 4.589374 CCCTCCGTTCCTAAATATGAGTCT 59.411 45.833 0.00 0.00 0.00 3.24
2375 3382 5.070580 CCCTCCGTTCCTAAATATGAGTCTT 59.929 44.000 0.00 0.00 0.00 3.01
2376 3383 6.408206 CCCTCCGTTCCTAAATATGAGTCTTT 60.408 42.308 0.00 0.00 0.00 2.52
2377 3384 7.048512 CCTCCGTTCCTAAATATGAGTCTTTT 58.951 38.462 0.00 0.00 0.00 2.27
2378 3385 7.553044 CCTCCGTTCCTAAATATGAGTCTTTTT 59.447 37.037 0.00 0.00 0.00 1.94
2379 3386 9.595823 CTCCGTTCCTAAATATGAGTCTTTTTA 57.404 33.333 0.00 0.00 0.00 1.52
2380 3387 9.595823 TCCGTTCCTAAATATGAGTCTTTTTAG 57.404 33.333 10.55 10.55 33.47 1.85
2381 3388 9.595823 CCGTTCCTAAATATGAGTCTTTTTAGA 57.404 33.333 15.58 0.00 34.90 2.10
2405 3412 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
2406 3413 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
2407 3414 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
2408 3415 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
2409 3416 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
2410 3417 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
2411 3418 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
2412 3419 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2413 3420 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2414 3421 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2415 3422 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2416 3423 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2417 3424 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2418 3425 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2419 3426 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2420 3427 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2421 3428 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2422 3429 5.415701 ACATACGGAGCAAAATGAGTGAATT 59.584 36.000 0.00 0.00 0.00 2.17
2423 3430 4.853924 ACGGAGCAAAATGAGTGAATTT 57.146 36.364 0.00 0.00 0.00 1.82
2424 3431 5.957842 ACGGAGCAAAATGAGTGAATTTA 57.042 34.783 0.00 0.00 0.00 1.40
2425 3432 5.699839 ACGGAGCAAAATGAGTGAATTTAC 58.300 37.500 0.00 0.00 0.00 2.01
2426 3433 5.240623 ACGGAGCAAAATGAGTGAATTTACA 59.759 36.000 2.93 0.00 0.00 2.41
2427 3434 5.569059 CGGAGCAAAATGAGTGAATTTACAC 59.431 40.000 2.93 0.00 40.60 2.90
2448 3455 7.744087 ACACTCTAAAATTTGTCTACATGCA 57.256 32.000 0.00 0.00 0.00 3.96
2449 3456 8.340618 ACACTCTAAAATTTGTCTACATGCAT 57.659 30.769 0.00 0.00 0.00 3.96
2450 3457 8.454106 ACACTCTAAAATTTGTCTACATGCATC 58.546 33.333 0.00 0.00 0.00 3.91
2451 3458 7.912250 CACTCTAAAATTTGTCTACATGCATCC 59.088 37.037 0.00 0.00 0.00 3.51
2452 3459 7.015226 TCTAAAATTTGTCTACATGCATCCG 57.985 36.000 0.00 0.00 0.00 4.18
2453 3460 5.643379 AAAATTTGTCTACATGCATCCGT 57.357 34.783 0.00 0.00 0.00 4.69
2454 3461 6.751514 AAAATTTGTCTACATGCATCCGTA 57.248 33.333 0.00 0.00 0.00 4.02
2455 3462 6.942532 AAATTTGTCTACATGCATCCGTAT 57.057 33.333 0.00 0.00 0.00 3.06
2456 3463 5.929697 ATTTGTCTACATGCATCCGTATG 57.070 39.130 0.00 0.00 40.73 2.39
2458 3465 5.523438 TTGTCTACATGCATCCGTATGTA 57.477 39.130 0.00 0.00 45.37 2.29
2468 3475 8.935844 ACATGCATCCGTATGTAGTTTATATTG 58.064 33.333 0.00 0.00 45.37 1.90
2469 3476 9.150348 CATGCATCCGTATGTAGTTTATATTGA 57.850 33.333 0.00 0.00 35.38 2.57
2470 3477 9.719355 ATGCATCCGTATGTAGTTTATATTGAA 57.281 29.630 0.00 0.00 35.38 2.69
2471 3478 9.549078 TGCATCCGTATGTAGTTTATATTGAAA 57.451 29.630 0.00 0.00 35.38 2.69
2504 3511 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
2505 3512 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2506 3513 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2507 3514 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2522 3529 7.011382 ACGGAGGGAGTATCAGAAATATAAGT 58.989 38.462 0.00 0.00 36.25 2.24
2947 3959 6.186957 TGTGTGGGCATGAAATATTTAGAGT 58.813 36.000 0.00 0.00 0.00 3.24
3039 4051 9.865484 CTTTGAAGTTTTTACTCTAGTTACAGC 57.135 33.333 0.00 0.00 0.00 4.40
3066 4078 7.084486 GGTCATGTAAGTGAATTTGGAAGAAC 58.916 38.462 0.00 0.00 0.00 3.01
3231 4249 7.986085 TGAGATTGGAGAAAGAACCTTAAAG 57.014 36.000 0.00 0.00 0.00 1.85
3319 4354 5.182001 CAGTTTGACTGGAATAACCCTGAAG 59.818 44.000 0.16 0.00 42.35 3.02
3490 4526 3.761657 TGTACCGTAACATCTTAGCACG 58.238 45.455 0.00 0.00 0.00 5.34
3495 4531 3.369385 CGTAACATCTTAGCACGTAGGG 58.631 50.000 0.00 0.00 0.00 3.53
3533 4569 0.481128 ATCCCAACCCGTCCAAAACT 59.519 50.000 0.00 0.00 0.00 2.66
3656 4692 2.962421 TGAGACCATTTTTGAACACCCC 59.038 45.455 0.00 0.00 0.00 4.95
3657 4693 3.230976 GAGACCATTTTTGAACACCCCT 58.769 45.455 0.00 0.00 0.00 4.79
3666 4702 5.514500 TTTTGAACACCCCTCTATTAGCT 57.486 39.130 0.00 0.00 0.00 3.32
3694 4730 4.951254 TGTTTCGTCCAGACTCATAAACA 58.049 39.130 10.73 10.73 34.12 2.83
3867 4903 8.418662 ACTAATACTAACCTAATGATTGCGTCA 58.581 33.333 0.00 0.00 42.06 4.35
3881 4917 3.332761 TGCGTCATGTCTTGTTGAAAC 57.667 42.857 0.00 0.00 0.00 2.78
3882 4918 2.286125 TGCGTCATGTCTTGTTGAAACG 60.286 45.455 0.00 0.00 0.00 3.60
3892 4929 4.011023 TCTTGTTGAAACGGTCCTGAAAA 58.989 39.130 0.00 0.00 0.00 2.29
3893 4930 4.642885 TCTTGTTGAAACGGTCCTGAAAAT 59.357 37.500 0.00 0.00 0.00 1.82
3952 4989 3.199946 CACAACCTAATCCCTGAAGCCTA 59.800 47.826 0.00 0.00 0.00 3.93
3975 5012 1.550976 CCCACGAGCTTTTAGAGGACT 59.449 52.381 0.00 0.00 0.00 3.85
3979 5016 4.639310 CCACGAGCTTTTAGAGGACTAGTA 59.361 45.833 0.00 0.00 0.00 1.82
3984 5021 6.457257 CGAGCTTTTAGAGGACTAGTACAGAC 60.457 46.154 8.10 0.00 0.00 3.51
4167 5207 7.123397 TCACACTCTGCTATTACTCTTTCTGAT 59.877 37.037 0.00 0.00 0.00 2.90
4365 5406 7.069331 TGTCATGGTTAAAAATCAAGTTGAGGT 59.931 33.333 11.91 0.00 0.00 3.85
4399 5440 4.686972 TCATTCCTCTCTCAGTTAATGCG 58.313 43.478 0.00 0.00 0.00 4.73
4402 5443 2.432146 TCCTCTCTCAGTTAATGCGCAT 59.568 45.455 19.28 19.28 0.00 4.73
4403 5444 2.543012 CCTCTCTCAGTTAATGCGCATG 59.457 50.000 26.09 13.12 0.00 4.06
4404 5445 3.193263 CTCTCTCAGTTAATGCGCATGT 58.807 45.455 26.09 16.15 0.00 3.21
4405 5446 2.931969 TCTCTCAGTTAATGCGCATGTG 59.068 45.455 26.09 18.31 0.00 3.21
4410 5451 5.180304 TCTCAGTTAATGCGCATGTGTTTTA 59.820 36.000 26.09 9.38 0.00 1.52
4413 5454 5.059587 CAGTTAATGCGCATGTGTTTTACTG 59.940 40.000 26.09 21.80 0.00 2.74
4415 5456 0.665298 TGCGCATGTGTTTTACTGCA 59.335 45.000 5.66 0.00 34.91 4.41
4568 5609 4.383552 CCTGTCCATAGCTAGCTCTTTGTT 60.384 45.833 23.26 0.00 0.00 2.83
4630 5672 0.682852 TGTCAAAATCGGTCGACCCT 59.317 50.000 28.52 13.68 0.00 4.34
5176 6218 8.671921 TCATGTACTCGGTTTTAGTTCTACTAG 58.328 37.037 0.00 0.00 31.47 2.57
5780 6823 2.951229 TCCCCCTTGTTCTTGAAGAC 57.049 50.000 0.00 0.00 0.00 3.01
6551 7594 2.354203 CCTTGAACACCTGAGCTACCTC 60.354 54.545 0.00 0.00 38.62 3.85
6914 7958 5.514500 AAACCTGTGTTAGATGTACCCAT 57.486 39.130 0.00 0.00 33.30 4.00
6924 7968 1.956477 GATGTACCCATGTGGCCATTC 59.044 52.381 9.72 0.00 37.83 2.67
6931 7975 1.617804 CCATGTGGCCATTCAGGTCTT 60.618 52.381 9.72 0.00 44.59 3.01
7225 8269 2.822643 ATCCTCCACCTCCTTCGCCA 62.823 60.000 0.00 0.00 0.00 5.69
7226 8270 2.370445 CCTCCACCTCCTTCGCCAT 61.370 63.158 0.00 0.00 0.00 4.40
7227 8271 1.604378 CTCCACCTCCTTCGCCATT 59.396 57.895 0.00 0.00 0.00 3.16
7228 8272 0.745845 CTCCACCTCCTTCGCCATTG 60.746 60.000 0.00 0.00 0.00 2.82
7229 8273 1.750399 CCACCTCCTTCGCCATTGG 60.750 63.158 0.00 0.00 0.00 3.16
7230 8274 1.750399 CACCTCCTTCGCCATTGGG 60.750 63.158 4.53 0.00 37.18 4.12
7370 8415 6.537355 TCTCTGTTTGTGATGAGAAGGAAAT 58.463 36.000 0.00 0.00 33.30 2.17
7406 8462 4.096984 CACCCTATCTTTGTTTCTCATGGC 59.903 45.833 0.00 0.00 0.00 4.40
7548 8604 0.609681 GGGACACCATTGCCGGTTTA 60.610 55.000 1.90 0.00 37.07 2.01
7629 8685 3.933048 ATGGCACTGAGCTGCACCC 62.933 63.158 1.02 0.00 44.79 4.61
7780 8836 6.095440 TGCTATAGGGCTTGTTTGAAATTCTC 59.905 38.462 1.04 0.00 0.00 2.87
7781 8837 6.095440 GCTATAGGGCTTGTTTGAAATTCTCA 59.905 38.462 1.04 0.00 0.00 3.27
7815 8871 9.665264 GAACATTGTGGTAGTTAAGAAAGAAAG 57.335 33.333 0.00 0.00 0.00 2.62
7835 8891 1.327764 GTTCGAACCGATGGATGCTTC 59.672 52.381 17.68 0.00 35.23 3.86
7858 8914 2.287393 TGATCGTTGTACATGTCGGG 57.713 50.000 0.00 0.00 0.00 5.14
8175 9232 2.440980 GCCAATCACAGCCCCCTC 60.441 66.667 0.00 0.00 0.00 4.30
8222 9279 4.169461 ACATCCTCCAATCCTCATTTCCAT 59.831 41.667 0.00 0.00 0.00 3.41
8236 9293 8.112822 TCCTCATTTCCATCCATTTAAACTACA 58.887 33.333 0.00 0.00 0.00 2.74
8389 9448 1.908793 CGCCGGATCCTCCAGGTAT 60.909 63.158 5.05 0.00 35.91 2.73
8551 9610 3.193691 ACGGTGAGTACAGAGAAATCTGG 59.806 47.826 9.85 0.00 41.76 3.86
8552 9611 3.429547 CGGTGAGTACAGAGAAATCTGGG 60.430 52.174 9.85 0.00 41.76 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.551702 TCAATCCAGATTCCTTCGTCAA 57.448 40.909 0.00 0.00 0.00 3.18
85 86 1.081094 GCCAGAAATGCATTTGCCAC 58.919 50.000 28.67 14.18 41.18 5.01
117 118 4.829492 CCCCAAAACTGAGAATCTTCTGTT 59.171 41.667 0.00 0.00 39.83 3.16
118 119 4.401925 CCCCAAAACTGAGAATCTTCTGT 58.598 43.478 0.00 0.00 37.73 3.41
122 123 3.160269 CTGCCCCAAAACTGAGAATCTT 58.840 45.455 0.00 0.00 34.92 2.40
131 132 2.118294 GGAGGCTGCCCCAAAACT 59.882 61.111 16.57 0.00 35.39 2.66
178 179 2.871096 TCACCCAACCGCTTCTTAAT 57.129 45.000 0.00 0.00 0.00 1.40
188 189 2.043953 GCCTCCCATCACCCAACC 60.044 66.667 0.00 0.00 0.00 3.77
190 191 2.159490 TGTGCCTCCCATCACCCAA 61.159 57.895 0.00 0.00 32.51 4.12
205 206 5.301805 ACCAATCTTTCCAAAACCTAGTGTG 59.698 40.000 0.00 0.00 0.00 3.82
220 221 2.719705 TGGAACCTACCCACCAATCTTT 59.280 45.455 0.00 0.00 0.00 2.52
261 262 5.638133 ACTATCCGGTTGTATAAGCTAGGA 58.362 41.667 0.00 0.85 31.46 2.94
264 265 8.355169 CAGTAAACTATCCGGTTGTATAAGCTA 58.645 37.037 0.00 0.00 32.23 3.32
267 268 9.760077 AATCAGTAAACTATCCGGTTGTATAAG 57.240 33.333 0.00 0.00 0.00 1.73
277 278 9.438291 CTGCAAAATAAATCAGTAAACTATCCG 57.562 33.333 0.00 0.00 0.00 4.18
293 927 7.362920 GCTCTGGGTTCTTTATCTGCAAAATAA 60.363 37.037 0.00 0.00 0.00 1.40
349 986 0.975887 ATTTCATTTGCCACCCGCTT 59.024 45.000 0.00 0.00 38.78 4.68
399 1036 3.960102 TCCAGTTTTCCAATCTTTGCACT 59.040 39.130 0.00 0.00 0.00 4.40
429 1066 9.743057 CGATAGATGAAGGAAATATCACCTATC 57.257 37.037 6.97 6.97 42.25 2.08
430 1067 9.261035 ACGATAGATGAAGGAAATATCACCTAT 57.739 33.333 0.00 0.00 35.52 2.57
432 1069 7.382110 CACGATAGATGAAGGAAATATCACCT 58.618 38.462 0.00 0.00 41.38 4.00
439 1076 3.069586 TCGCCACGATAGATGAAGGAAAT 59.930 43.478 0.00 0.00 41.38 2.17
448 1085 2.171003 TCCATCATCGCCACGATAGAT 58.829 47.619 1.67 5.80 45.19 1.98
462 1099 4.226384 ACATAGGTAGCTCACATCCATCA 58.774 43.478 0.00 0.00 0.00 3.07
481 1118 5.599999 ACGCTGAAGAAGGTAAGATACAT 57.400 39.130 0.00 0.00 0.00 2.29
490 1127 4.642429 AGACATAAAACGCTGAAGAAGGT 58.358 39.130 0.00 0.00 0.00 3.50
491 1128 6.721571 TTAGACATAAAACGCTGAAGAAGG 57.278 37.500 0.00 0.00 0.00 3.46
503 1140 4.201812 GCAGCAGACGCATTAGACATAAAA 60.202 41.667 0.00 0.00 42.27 1.52
514 1151 1.630244 GACGAAAGCAGCAGACGCAT 61.630 55.000 0.00 0.00 42.27 4.73
515 1152 2.280119 ACGAAAGCAGCAGACGCA 60.280 55.556 0.00 0.00 42.27 5.24
516 1153 0.732880 TAGACGAAAGCAGCAGACGC 60.733 55.000 0.00 0.00 38.99 5.19
517 1154 1.135660 TCTAGACGAAAGCAGCAGACG 60.136 52.381 0.00 0.00 0.00 4.18
570 1207 1.890625 TAATCCACACACGACGGGGG 61.891 60.000 0.00 0.00 0.00 5.40
617 1254 9.906660 CTTAATCTACCAGAAGCTAGATAAGTG 57.093 37.037 0.00 0.00 30.83 3.16
622 1259 9.594936 ACATACTTAATCTACCAGAAGCTAGAT 57.405 33.333 0.00 0.00 32.10 1.98
646 1283 5.104776 AGCATCACAAATCTAGGCTAGAACA 60.105 40.000 26.79 6.10 38.50 3.18
657 1294 4.180057 GACGAAGAGAGCATCACAAATCT 58.820 43.478 0.00 0.00 37.82 2.40
683 1320 6.953609 GGCACAAGCTTGGGACAAGTTTTT 62.954 45.833 32.66 2.15 40.16 1.94
684 1321 5.551722 GGCACAAGCTTGGGACAAGTTTT 62.552 47.826 32.66 2.73 40.16 2.43
685 1322 4.113906 GGCACAAGCTTGGGACAAGTTT 62.114 50.000 32.66 3.54 40.16 2.66
686 1323 2.635117 GGCACAAGCTTGGGACAAGTT 61.635 52.381 32.66 4.35 40.16 2.66
687 1324 1.109323 GGCACAAGCTTGGGACAAGT 61.109 55.000 32.66 5.17 40.16 3.16
688 1325 1.662044 GGCACAAGCTTGGGACAAG 59.338 57.895 32.66 13.68 40.16 3.16
689 1326 2.192861 CGGCACAAGCTTGGGACAA 61.193 57.895 33.12 0.00 40.56 3.18
690 1327 2.594303 CGGCACAAGCTTGGGACA 60.594 61.111 33.12 0.00 40.56 4.02
691 1328 3.365265 CCGGCACAAGCTTGGGAC 61.365 66.667 32.66 29.21 41.70 4.46
692 1329 1.558167 TATCCGGCACAAGCTTGGGA 61.558 55.000 32.66 25.59 41.70 4.37
693 1330 1.077787 TATCCGGCACAAGCTTGGG 60.078 57.895 29.18 27.11 41.70 4.12
694 1331 0.676466 TGTATCCGGCACAAGCTTGG 60.676 55.000 29.18 18.79 41.70 3.61
695 1332 1.382522 ATGTATCCGGCACAAGCTTG 58.617 50.000 24.84 24.84 41.70 4.01
696 1333 2.017049 GAATGTATCCGGCACAAGCTT 58.983 47.619 12.03 0.00 41.70 3.74
697 1334 1.065491 TGAATGTATCCGGCACAAGCT 60.065 47.619 12.03 1.68 41.70 3.74
698 1335 1.378531 TGAATGTATCCGGCACAAGC 58.621 50.000 12.03 8.16 41.10 4.01
699 1336 4.096231 TCAAATGAATGTATCCGGCACAAG 59.904 41.667 12.03 0.00 0.00 3.16
700 1337 4.013050 TCAAATGAATGTATCCGGCACAA 58.987 39.130 12.03 0.00 0.00 3.33
701 1338 3.615155 TCAAATGAATGTATCCGGCACA 58.385 40.909 10.64 10.64 0.00 4.57
702 1339 3.876914 TCTCAAATGAATGTATCCGGCAC 59.123 43.478 0.00 0.00 0.00 5.01
703 1340 4.129380 CTCTCAAATGAATGTATCCGGCA 58.871 43.478 0.00 0.00 0.00 5.69
704 1341 4.212214 GTCTCTCAAATGAATGTATCCGGC 59.788 45.833 0.00 0.00 0.00 6.13
705 1342 5.359756 TGTCTCTCAAATGAATGTATCCGG 58.640 41.667 0.00 0.00 0.00 5.14
706 1343 6.908870 TTGTCTCTCAAATGAATGTATCCG 57.091 37.500 0.00 0.00 32.64 4.18
707 1344 8.273780 AGTTTGTCTCTCAAATGAATGTATCC 57.726 34.615 0.00 0.00 45.88 2.59
711 1348 9.305925 GAAAAAGTTTGTCTCTCAAATGAATGT 57.694 29.630 0.00 0.00 45.88 2.71
712 1349 8.474577 CGAAAAAGTTTGTCTCTCAAATGAATG 58.525 33.333 4.29 0.00 45.88 2.67
713 1350 7.649306 CCGAAAAAGTTTGTCTCTCAAATGAAT 59.351 33.333 4.29 0.00 45.88 2.57
714 1351 6.972328 CCGAAAAAGTTTGTCTCTCAAATGAA 59.028 34.615 4.29 0.00 45.88 2.57
715 1352 6.317642 TCCGAAAAAGTTTGTCTCTCAAATGA 59.682 34.615 4.29 0.00 45.88 2.57
716 1353 6.414987 GTCCGAAAAAGTTTGTCTCTCAAATG 59.585 38.462 4.29 0.00 45.88 2.32
717 1354 6.495706 GTCCGAAAAAGTTTGTCTCTCAAAT 58.504 36.000 4.29 0.00 45.88 2.32
718 1355 5.446741 CGTCCGAAAAAGTTTGTCTCTCAAA 60.447 40.000 4.29 0.00 42.79 2.69
719 1356 4.033587 CGTCCGAAAAAGTTTGTCTCTCAA 59.966 41.667 4.29 0.00 0.00 3.02
720 1357 3.554324 CGTCCGAAAAAGTTTGTCTCTCA 59.446 43.478 4.29 0.00 0.00 3.27
721 1358 3.059800 CCGTCCGAAAAAGTTTGTCTCTC 60.060 47.826 4.29 0.00 0.00 3.20
722 1359 2.870411 CCGTCCGAAAAAGTTTGTCTCT 59.130 45.455 4.29 0.00 0.00 3.10
723 1360 2.867975 TCCGTCCGAAAAAGTTTGTCTC 59.132 45.455 4.29 0.00 0.00 3.36
724 1361 2.870411 CTCCGTCCGAAAAAGTTTGTCT 59.130 45.455 4.29 0.00 0.00 3.41
725 1362 2.032290 CCTCCGTCCGAAAAAGTTTGTC 60.032 50.000 0.00 0.00 0.00 3.18
726 1363 1.944709 CCTCCGTCCGAAAAAGTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
727 1364 2.215196 TCCTCCGTCCGAAAAAGTTTG 58.785 47.619 0.00 0.00 0.00 2.93
728 1365 2.625695 TCCTCCGTCCGAAAAAGTTT 57.374 45.000 0.00 0.00 0.00 2.66
729 1366 2.158856 ACTTCCTCCGTCCGAAAAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
730 1367 1.415289 ACTTCCTCCGTCCGAAAAAGT 59.585 47.619 0.00 0.00 0.00 2.66
731 1368 2.165319 ACTTCCTCCGTCCGAAAAAG 57.835 50.000 0.00 0.00 0.00 2.27
732 1369 3.967332 ATACTTCCTCCGTCCGAAAAA 57.033 42.857 0.00 0.00 0.00 1.94
733 1370 4.646040 TCATATACTTCCTCCGTCCGAAAA 59.354 41.667 0.00 0.00 0.00 2.29
734 1371 4.209538 TCATATACTTCCTCCGTCCGAAA 58.790 43.478 0.00 0.00 0.00 3.46
735 1372 3.824133 TCATATACTTCCTCCGTCCGAA 58.176 45.455 0.00 0.00 0.00 4.30
736 1373 3.497103 TCATATACTTCCTCCGTCCGA 57.503 47.619 0.00 0.00 0.00 4.55
737 1374 3.506455 ACATCATATACTTCCTCCGTCCG 59.494 47.826 0.00 0.00 0.00 4.79
738 1375 4.810790 CACATCATATACTTCCTCCGTCC 58.189 47.826 0.00 0.00 0.00 4.79
739 1376 4.021894 AGCACATCATATACTTCCTCCGTC 60.022 45.833 0.00 0.00 0.00 4.79
740 1377 3.898123 AGCACATCATATACTTCCTCCGT 59.102 43.478 0.00 0.00 0.00 4.69
741 1378 4.527509 AGCACATCATATACTTCCTCCG 57.472 45.455 0.00 0.00 0.00 4.63
742 1379 6.767902 TCAAAAGCACATCATATACTTCCTCC 59.232 38.462 0.00 0.00 0.00 4.30
743 1380 7.792374 TCAAAAGCACATCATATACTTCCTC 57.208 36.000 0.00 0.00 0.00 3.71
744 1381 7.230108 CCATCAAAAGCACATCATATACTTCCT 59.770 37.037 0.00 0.00 0.00 3.36
745 1382 7.013655 ACCATCAAAAGCACATCATATACTTCC 59.986 37.037 0.00 0.00 0.00 3.46
746 1383 7.934457 ACCATCAAAAGCACATCATATACTTC 58.066 34.615 0.00 0.00 0.00 3.01
747 1384 7.886629 ACCATCAAAAGCACATCATATACTT 57.113 32.000 0.00 0.00 0.00 2.24
748 1385 7.886629 AACCATCAAAAGCACATCATATACT 57.113 32.000 0.00 0.00 0.00 2.12
749 1386 7.376866 CGAAACCATCAAAAGCACATCATATAC 59.623 37.037 0.00 0.00 0.00 1.47
760 1397 9.952341 GATTTTATTAACGAAACCATCAAAAGC 57.048 29.630 0.00 0.00 0.00 3.51
788 1425 6.147473 TTTTTAATCAAAAGAGGGGTCCCTT 58.853 36.000 10.30 0.00 37.80 3.95
812 1451 9.586435 ACACTTTCAATCGATTTTCTTTTTCTT 57.414 25.926 8.21 0.00 0.00 2.52
813 1452 9.586435 AACACTTTCAATCGATTTTCTTTTTCT 57.414 25.926 8.21 0.00 0.00 2.52
912 1719 0.025256 TCGCGTTTGTTCGTGTTGAC 59.975 50.000 5.77 0.00 41.26 3.18
945 1757 5.088680 TGACCCGGTCGTATAAGATTTTT 57.911 39.130 13.02 0.00 34.95 1.94
946 1758 4.442472 CCTGACCCGGTCGTATAAGATTTT 60.442 45.833 13.02 0.00 34.95 1.82
1187 2006 1.269051 GGAGCACAAAACGAAGGTTGG 60.269 52.381 0.00 0.00 36.25 3.77
1296 2118 3.058160 CAGAAAGCAGGGCACGGG 61.058 66.667 0.00 0.00 0.00 5.28
1410 2233 6.657541 TCCTGGCTAACTTCAAAACGAATTAT 59.342 34.615 0.00 0.00 31.69 1.28
1412 2235 4.825085 TCCTGGCTAACTTCAAAACGAATT 59.175 37.500 0.00 0.00 31.69 2.17
1430 2253 3.138283 TGCTCTATTAAACCCCATCCTGG 59.862 47.826 0.00 0.00 37.25 4.45
1470 2293 3.030291 CTGCTCTAACCAGATGAGTCCT 58.970 50.000 0.00 0.00 32.03 3.85
1615 2440 4.461081 GGCCAATGTTGTTATACCACTTGA 59.539 41.667 0.00 0.00 0.00 3.02
1624 2449 4.095946 ACATCCAAGGCCAATGTTGTTAT 58.904 39.130 5.01 0.00 29.51 1.89
1664 2489 3.760151 GGATAAACCTTGGCTAAACCGTT 59.240 43.478 0.00 0.00 37.11 4.44
1825 2650 3.480470 AGCTATGTATGCATTGGTGTCC 58.520 45.455 3.54 0.00 37.23 4.02
1949 2774 0.764271 AAAATGGGCCCCAAGTGTTG 59.236 50.000 22.27 0.00 36.95 3.33
2050 2875 1.510623 CTTGCTTGCGTCGTCATGC 60.511 57.895 15.53 15.53 37.56 4.06
2059 2884 7.578852 TGAATAGATCAATATTCTTGCTTGCG 58.421 34.615 13.12 0.00 41.03 4.85
2192 3199 9.796120 CGCTCTTATATTTCTTTATAGAGGGAG 57.204 37.037 0.00 0.00 36.40 4.30
2193 3200 9.310449 ACGCTCTTATATTTCTTTATAGAGGGA 57.690 33.333 16.73 0.00 37.30 4.20
2194 3201 9.930693 AACGCTCTTATATTTCTTTATAGAGGG 57.069 33.333 0.00 0.00 38.95 4.30
2210 3217 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2211 3218 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2212 3219 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2213 3220 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2227 3234 7.216973 AGAGTGTTTCGATCACTACTTTAGT 57.783 36.000 19.01 1.10 44.68 2.24
2228 3235 9.790389 ATAAGAGTGTTTCGATCACTACTTTAG 57.210 33.333 23.08 0.00 44.68 1.85
2235 3242 9.877178 AAGAAATATAAGAGTGTTTCGATCACT 57.123 29.630 19.04 19.04 46.86 3.41
2240 3247 9.079833 CCGTAAAGAAATATAAGAGTGTTTCGA 57.920 33.333 0.00 0.00 36.10 3.71
2241 3248 9.079833 TCCGTAAAGAAATATAAGAGTGTTTCG 57.920 33.333 0.00 0.00 36.10 3.46
2243 3250 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
2244 3251 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
2245 3252 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
2246 3253 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
2247 3254 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
2248 3255 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2249 3256 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2250 3257 8.858094 ACTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2251 3258 8.773033 ACTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2252 3259 8.636213 CAACTACTCCCTCCGTAAAGAAATATA 58.364 37.037 0.00 0.00 0.00 0.86
2253 3260 7.125356 ACAACTACTCCCTCCGTAAAGAAATAT 59.875 37.037 0.00 0.00 0.00 1.28
2254 3261 6.438425 ACAACTACTCCCTCCGTAAAGAAATA 59.562 38.462 0.00 0.00 0.00 1.40
2255 3262 5.247792 ACAACTACTCCCTCCGTAAAGAAAT 59.752 40.000 0.00 0.00 0.00 2.17
2256 3263 4.590222 ACAACTACTCCCTCCGTAAAGAAA 59.410 41.667 0.00 0.00 0.00 2.52
2257 3264 4.154942 ACAACTACTCCCTCCGTAAAGAA 58.845 43.478 0.00 0.00 0.00 2.52
2258 3265 3.771216 ACAACTACTCCCTCCGTAAAGA 58.229 45.455 0.00 0.00 0.00 2.52
2259 3266 4.532314 AACAACTACTCCCTCCGTAAAG 57.468 45.455 0.00 0.00 0.00 1.85
2260 3267 6.418057 TTTAACAACTACTCCCTCCGTAAA 57.582 37.500 0.00 0.00 0.00 2.01
2261 3268 6.041979 ACTTTTAACAACTACTCCCTCCGTAA 59.958 38.462 0.00 0.00 0.00 3.18
2262 3269 5.539955 ACTTTTAACAACTACTCCCTCCGTA 59.460 40.000 0.00 0.00 0.00 4.02
2263 3270 4.346127 ACTTTTAACAACTACTCCCTCCGT 59.654 41.667 0.00 0.00 0.00 4.69
2264 3271 4.689345 CACTTTTAACAACTACTCCCTCCG 59.311 45.833 0.00 0.00 0.00 4.63
2265 3272 5.469084 CACACTTTTAACAACTACTCCCTCC 59.531 44.000 0.00 0.00 0.00 4.30
2266 3273 6.285990 TCACACTTTTAACAACTACTCCCTC 58.714 40.000 0.00 0.00 0.00 4.30
2267 3274 6.243216 TCACACTTTTAACAACTACTCCCT 57.757 37.500 0.00 0.00 0.00 4.20
2268 3275 6.708949 TGATCACACTTTTAACAACTACTCCC 59.291 38.462 0.00 0.00 0.00 4.30
2269 3276 7.724305 TGATCACACTTTTAACAACTACTCC 57.276 36.000 0.00 0.00 0.00 3.85
2270 3277 9.599322 CAATGATCACACTTTTAACAACTACTC 57.401 33.333 0.00 0.00 0.00 2.59
2271 3278 9.337396 TCAATGATCACACTTTTAACAACTACT 57.663 29.630 0.00 0.00 0.00 2.57
2348 3355 4.553678 TCATATTTAGGAACGGAGGGAGT 58.446 43.478 0.00 0.00 0.00 3.85
2349 3356 4.589374 ACTCATATTTAGGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
2350 3357 4.553678 ACTCATATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
2351 3358 4.589374 AGACTCATATTTAGGAACGGAGGG 59.411 45.833 0.00 0.00 0.00 4.30
2352 3359 5.793030 AGACTCATATTTAGGAACGGAGG 57.207 43.478 0.00 0.00 0.00 4.30
2353 3360 8.494016 AAAAAGACTCATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2354 3361 9.595823 CTAAAAAGACTCATATTTAGGAACGGA 57.404 33.333 0.00 0.00 33.69 4.69
2355 3362 9.595823 TCTAAAAAGACTCATATTTAGGAACGG 57.404 33.333 0.00 0.00 36.48 4.44
2379 3386 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
2380 3387 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
2381 3388 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
2382 3389 7.063544 GCTCCGTATGTAGTCCATATTGAAATC 59.936 40.741 0.00 0.00 38.29 2.17
2383 3390 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
2384 3391 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
2385 3392 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
2386 3393 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
2387 3394 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
2388 3395 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
2389 3396 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
2390 3397 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2391 3398 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2392 3399 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2393 3400 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2394 3401 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2395 3402 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2396 3403 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2397 3404 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2398 3405 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2399 3406 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2400 3407 6.515272 AAATTCACTCATTTTGCTCCGTAT 57.485 33.333 0.00 0.00 0.00 3.06
2401 3408 5.957842 AAATTCACTCATTTTGCTCCGTA 57.042 34.783 0.00 0.00 0.00 4.02
2402 3409 4.853924 AAATTCACTCATTTTGCTCCGT 57.146 36.364 0.00 0.00 0.00 4.69
2403 3410 5.569059 GTGTAAATTCACTCATTTTGCTCCG 59.431 40.000 0.00 0.00 35.68 4.63
2404 3411 6.681777 AGTGTAAATTCACTCATTTTGCTCC 58.318 36.000 0.00 0.00 44.07 4.70
2422 3429 9.278978 TGCATGTAGACAAATTTTAGAGTGTAA 57.721 29.630 0.00 0.00 0.00 2.41
2423 3430 8.840833 TGCATGTAGACAAATTTTAGAGTGTA 57.159 30.769 0.00 0.00 0.00 2.90
2424 3431 7.744087 TGCATGTAGACAAATTTTAGAGTGT 57.256 32.000 0.00 0.00 0.00 3.55
2425 3432 7.912250 GGATGCATGTAGACAAATTTTAGAGTG 59.088 37.037 2.46 0.00 0.00 3.51
2426 3433 7.201644 CGGATGCATGTAGACAAATTTTAGAGT 60.202 37.037 2.46 0.00 0.00 3.24
2427 3434 7.128331 CGGATGCATGTAGACAAATTTTAGAG 58.872 38.462 2.46 0.00 0.00 2.43
2428 3435 6.597672 ACGGATGCATGTAGACAAATTTTAGA 59.402 34.615 2.46 0.00 0.00 2.10
2429 3436 6.785191 ACGGATGCATGTAGACAAATTTTAG 58.215 36.000 2.46 0.00 0.00 1.85
2430 3437 6.751514 ACGGATGCATGTAGACAAATTTTA 57.248 33.333 2.46 0.00 0.00 1.52
2431 3438 5.643379 ACGGATGCATGTAGACAAATTTT 57.357 34.783 2.46 0.00 0.00 1.82
2432 3439 6.318648 ACATACGGATGCATGTAGACAAATTT 59.681 34.615 7.78 0.00 36.43 1.82
2433 3440 5.822519 ACATACGGATGCATGTAGACAAATT 59.177 36.000 7.78 0.00 36.43 1.82
2434 3441 5.368145 ACATACGGATGCATGTAGACAAAT 58.632 37.500 7.78 0.00 36.43 2.32
2435 3442 4.765273 ACATACGGATGCATGTAGACAAA 58.235 39.130 7.78 0.00 36.43 2.83
2436 3443 4.400529 ACATACGGATGCATGTAGACAA 57.599 40.909 7.78 0.00 36.43 3.18
2442 3449 8.935844 CAATATAAACTACATACGGATGCATGT 58.064 33.333 7.78 0.00 38.81 3.21
2443 3450 9.150348 TCAATATAAACTACATACGGATGCATG 57.850 33.333 7.78 0.25 36.43 4.06
2444 3451 9.719355 TTCAATATAAACTACATACGGATGCAT 57.281 29.630 7.78 0.00 36.43 3.96
2445 3452 9.549078 TTTCAATATAAACTACATACGGATGCA 57.451 29.630 7.78 0.00 36.43 3.96
2478 3485 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2479 3486 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2480 3487 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2481 3488 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2482 3489 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2483 3490 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2484 3491 9.857957 GATACTCCCTCCGTTTCTAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
2485 3492 9.370930 TGATACTCCCTCCGTTTCTAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
2486 3493 8.945195 TGATACTCCCTCCGTTTCTAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
2487 3494 7.728981 TCTGATACTCCCTCCGTTTCTAAATAT 59.271 37.037 0.00 0.00 0.00 1.28
2488 3495 7.064866 TCTGATACTCCCTCCGTTTCTAAATA 58.935 38.462 0.00 0.00 0.00 1.40
2489 3496 5.897824 TCTGATACTCCCTCCGTTTCTAAAT 59.102 40.000 0.00 0.00 0.00 1.40
2490 3497 5.266788 TCTGATACTCCCTCCGTTTCTAAA 58.733 41.667 0.00 0.00 0.00 1.85
2491 3498 4.863548 TCTGATACTCCCTCCGTTTCTAA 58.136 43.478 0.00 0.00 0.00 2.10
2492 3499 4.515028 TCTGATACTCCCTCCGTTTCTA 57.485 45.455 0.00 0.00 0.00 2.10
2493 3500 3.383698 TCTGATACTCCCTCCGTTTCT 57.616 47.619 0.00 0.00 0.00 2.52
2494 3501 4.467198 TTTCTGATACTCCCTCCGTTTC 57.533 45.455 0.00 0.00 0.00 2.78
2495 3502 6.749036 ATATTTCTGATACTCCCTCCGTTT 57.251 37.500 0.00 0.00 0.00 3.60
2496 3503 7.509659 ACTTATATTTCTGATACTCCCTCCGTT 59.490 37.037 0.00 0.00 0.00 4.44
2497 3504 7.011382 ACTTATATTTCTGATACTCCCTCCGT 58.989 38.462 0.00 0.00 0.00 4.69
2498 3505 7.469537 ACTTATATTTCTGATACTCCCTCCG 57.530 40.000 0.00 0.00 0.00 4.63
2563 3571 5.250200 ACTTGTCGGTATGCCATCTTAAAA 58.750 37.500 0.00 0.00 34.09 1.52
2564 3572 4.839121 ACTTGTCGGTATGCCATCTTAAA 58.161 39.130 0.00 0.00 34.09 1.52
2724 3735 7.395772 TCCTGCACCTACATTATTCATGAAAAA 59.604 33.333 13.09 0.64 36.24 1.94
2947 3959 5.518848 AGAAATGTCTGTTGCACAAATCA 57.481 34.783 0.00 0.00 30.83 2.57
2967 3979 4.368315 CAACAAGGCATAGCACGTATAGA 58.632 43.478 0.00 0.00 0.00 1.98
3039 4051 6.430925 TCTTCCAAATTCACTTACATGACCAG 59.569 38.462 0.00 0.00 0.00 4.00
3066 4078 3.012518 CACTTTACCCTCCAGATTGCTG 58.987 50.000 0.00 0.00 41.93 4.41
3177 4195 9.750882 GGTAAGCTACGTATTTTAAAAGTTCAG 57.249 33.333 6.79 1.78 0.00 3.02
3275 4294 4.065088 CTGCCATAACTATTATGCGTGGT 58.935 43.478 3.48 0.00 41.28 4.16
3319 4354 7.148340 ACACTGCAATACTGAATAAAGCTCTTC 60.148 37.037 0.00 0.00 0.00 2.87
3464 4500 7.514125 CGTGCTAAGATGTTACGGTACAATAAC 60.514 40.741 10.20 10.20 32.24 1.89
3482 4518 1.274167 TGAACACCCCTACGTGCTAAG 59.726 52.381 0.00 0.00 37.25 2.18
3490 4526 1.066645 CCCGTACTTGAACACCCCTAC 60.067 57.143 0.00 0.00 0.00 3.18
3495 4531 2.243602 TCAACCCGTACTTGAACACC 57.756 50.000 0.00 0.00 0.00 4.16
3656 4692 6.913673 GGACGAAACAAGTAGAGCTAATAGAG 59.086 42.308 0.00 0.00 0.00 2.43
3657 4693 6.376299 TGGACGAAACAAGTAGAGCTAATAGA 59.624 38.462 0.00 0.00 0.00 1.98
3666 4702 3.887110 TGAGTCTGGACGAAACAAGTAGA 59.113 43.478 0.00 0.00 36.20 2.59
3694 4730 8.514594 GTGTTGCATGCCTATAATATGTGTATT 58.485 33.333 16.68 0.00 34.90 1.89
3847 4883 5.428253 ACATGACGCAATCATTAGGTTAGT 58.572 37.500 0.00 0.00 46.54 2.24
3853 4889 5.475273 ACAAGACATGACGCAATCATTAG 57.525 39.130 0.00 0.00 46.54 1.73
3863 4899 2.286833 ACCGTTTCAACAAGACATGACG 59.713 45.455 0.00 0.00 0.00 4.35
3867 4903 2.878406 CAGGACCGTTTCAACAAGACAT 59.122 45.455 0.00 0.00 0.00 3.06
3881 4917 1.127951 CGTTTCGGATTTTCAGGACCG 59.872 52.381 0.00 0.00 45.61 4.79
3882 4918 2.894307 CGTTTCGGATTTTCAGGACC 57.106 50.000 0.00 0.00 0.00 4.46
3952 4989 2.370849 TCCTCTAAAAGCTCGTGGGTTT 59.629 45.455 0.00 3.41 46.03 3.27
3975 5012 7.946381 ATGAGATTGTGAAGAGTCTGTACTA 57.054 36.000 0.00 0.00 35.56 1.82
3979 5016 6.211184 AGAGAATGAGATTGTGAAGAGTCTGT 59.789 38.462 0.00 0.00 0.00 3.41
3984 5021 7.868922 CCTGATAGAGAATGAGATTGTGAAGAG 59.131 40.741 0.00 0.00 0.00 2.85
4167 5207 7.656137 GTCTATTTATTCGAAACCCTCATGCTA 59.344 37.037 0.00 0.00 0.00 3.49
4322 5363 9.442047 AACCATGACAAAACAAAACTGATTAAA 57.558 25.926 0.00 0.00 0.00 1.52
4365 5406 3.769844 GAGAGGAATGAGTAGTGTTGGGA 59.230 47.826 0.00 0.00 0.00 4.37
4410 5451 4.775058 TGTTGTTGTTGTTTACTGCAGT 57.225 36.364 25.12 25.12 0.00 4.40
4413 5454 5.175856 TGTTGTTGTTGTTGTTGTTTACTGC 59.824 36.000 0.00 0.00 0.00 4.40
4415 5456 6.757010 TGTTGTTGTTGTTGTTGTTGTTTACT 59.243 30.769 0.00 0.00 0.00 2.24
4568 5609 4.624913 AGACCTGAAGGATTGGAGTATCA 58.375 43.478 2.62 0.00 38.94 2.15
4630 5672 1.556911 GGAGAATGTCAAGAGAGGGCA 59.443 52.381 0.00 0.00 0.00 5.36
5176 6218 2.022195 GGAATCGAAAGGGTTTAGGCC 58.978 52.381 0.00 0.00 0.00 5.19
6198 7241 0.392595 GGTTAGGCACGAAGGAAGGG 60.393 60.000 0.00 0.00 0.00 3.95
6551 7594 2.356667 GGTGGAAGCTCAAGGGGG 59.643 66.667 0.00 0.00 0.00 5.40
6659 7703 2.769602 GGTGATACCTGGGGAGAGTA 57.230 55.000 0.00 0.00 34.73 2.59
6914 7958 1.003580 GAGAAGACCTGAATGGCCACA 59.996 52.381 8.16 0.36 40.22 4.17
6924 7968 3.960102 AGCTCTTCATAGGAGAAGACCTG 59.040 47.826 2.50 0.00 46.62 4.00
6931 7975 3.957497 GGTGAGAAGCTCTTCATAGGAGA 59.043 47.826 11.69 0.00 41.84 3.71
7225 8269 0.540830 TAAAACACAGCCCGCCCAAT 60.541 50.000 0.00 0.00 0.00 3.16
7226 8270 1.152735 TAAAACACAGCCCGCCCAA 60.153 52.632 0.00 0.00 0.00 4.12
7227 8271 1.899534 GTAAAACACAGCCCGCCCA 60.900 57.895 0.00 0.00 0.00 5.36
7228 8272 1.602605 AGTAAAACACAGCCCGCCC 60.603 57.895 0.00 0.00 0.00 6.13
7229 8273 1.579429 CAGTAAAACACAGCCCGCC 59.421 57.895 0.00 0.00 0.00 6.13
7230 8274 1.081442 GCAGTAAAACACAGCCCGC 60.081 57.895 0.00 0.00 33.74 6.13
7231 8275 0.238289 CTGCAGTAAAACACAGCCCG 59.762 55.000 5.25 0.00 38.83 6.13
7232 8276 1.318576 ACTGCAGTAAAACACAGCCC 58.681 50.000 20.16 0.00 38.83 5.19
7233 8277 4.766404 ATTACTGCAGTAAAACACAGCC 57.234 40.909 35.91 0.00 42.93 4.85
7234 8278 5.739161 GCATATTACTGCAGTAAAACACAGC 59.261 40.000 35.91 27.82 42.93 4.40
7235 8279 6.128035 TGGCATATTACTGCAGTAAAACACAG 60.128 38.462 35.91 23.87 44.12 3.66
7318 8363 7.041635 TGCACAGATCTTCAAGATTTCAAAA 57.958 32.000 0.16 0.00 34.53 2.44
7406 8462 3.614616 GGTAGCAACTTGACGAATCTCAG 59.385 47.826 0.00 0.00 0.00 3.35
7410 8466 5.006746 CCATAAGGTAGCAACTTGACGAATC 59.993 44.000 0.00 0.00 0.00 2.52
7548 8604 5.449451 GGTGTTTACAACCAACTCGTCAAAT 60.449 40.000 0.00 0.00 0.00 2.32
7629 8685 0.178998 AATAGCAGCAGCCATCTGGG 60.179 55.000 0.00 0.00 43.56 4.45
7780 8836 7.769272 AACTACCACAATGTTCAACATTTTG 57.231 32.000 18.74 18.74 45.80 2.44
7781 8837 9.528018 CTTAACTACCACAATGTTCAACATTTT 57.472 29.630 13.35 4.44 45.80 1.82
7815 8871 1.327764 GAAGCATCCATCGGTTCGAAC 59.672 52.381 20.14 20.14 39.99 3.95
7835 8891 4.444388 CCCGACATGTACAACGATCATAAG 59.556 45.833 17.50 4.02 0.00 1.73
7858 8914 6.735130 AGCAAAACCAGTAACAGAACATAAC 58.265 36.000 0.00 0.00 0.00 1.89
8175 9232 1.302832 GCCCATGAAGGATAGGCCG 60.303 63.158 0.00 0.00 43.43 6.13
8222 9279 6.209788 GGGAAATGTGGTGTAGTTTAAATGGA 59.790 38.462 0.00 0.00 0.00 3.41
8236 9293 1.480498 GGTTGTGGAGGGAAATGTGGT 60.480 52.381 0.00 0.00 0.00 4.16
8377 9436 1.135094 CTGTGGCATACCTGGAGGAT 58.865 55.000 0.00 0.00 38.94 3.24
8479 9538 4.003788 CTCGAGGTGGCAACGGGT 62.004 66.667 3.91 0.00 42.51 5.28
8485 9544 3.449227 CCTACGCTCGAGGTGGCA 61.449 66.667 15.58 0.00 0.00 4.92
8552 9611 3.397613 AATCTCAGCTGCGAGCCCC 62.398 63.158 12.62 0.00 43.77 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.