Multiple sequence alignment - TraesCS4B01G089000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G089000 chr4B 100.000 4601 0 0 1 4601 90461269 90456669 0.000000e+00 8497.0
1 TraesCS4B01G089000 chr4B 95.439 285 11 2 485 767 670246924 670246640 1.950000e-123 453.0
2 TraesCS4B01G089000 chr4D 95.471 3091 97 19 758 3840 62117417 62120472 0.000000e+00 4892.0
3 TraesCS4B01G089000 chr4D 93.785 708 39 4 3897 4601 62120675 62121380 0.000000e+00 1059.0
4 TraesCS4B01G089000 chr4D 87.298 433 51 4 1 431 62116962 62117392 4.140000e-135 492.0
5 TraesCS4B01G089000 chr4D 94.030 67 4 0 4532 4598 62121377 62121311 8.140000e-18 102.0
6 TraesCS4B01G089000 chr4A 93.992 3079 123 33 758 3804 535464016 535467064 0.000000e+00 4604.0
7 TraesCS4B01G089000 chr4A 93.935 775 34 6 3807 4579 535467112 535467875 0.000000e+00 1158.0
8 TraesCS4B01G089000 chr4A 85.494 324 43 3 68 389 535435238 535435559 7.380000e-88 335.0
9 TraesCS4B01G089000 chr4A 80.315 127 24 1 27 152 24941533 24941659 1.360000e-15 95.3
10 TraesCS4B01G089000 chr2B 96.809 282 9 0 481 762 177180596 177180877 5.390000e-129 472.0
11 TraesCS4B01G089000 chr2B 95.455 286 13 0 477 762 6960430 6960145 1.510000e-124 457.0
12 TraesCS4B01G089000 chr2B 95.775 284 11 1 482 764 82006069 82005786 1.510000e-124 457.0
13 TraesCS4B01G089000 chr3B 96.466 283 10 0 479 761 122720458 122720740 6.970000e-128 468.0
14 TraesCS4B01G089000 chr3B 96.441 281 10 0 481 761 627981215 627981495 9.020000e-127 464.0
15 TraesCS4B01G089000 chr3B 96.140 285 9 2 479 762 823673568 823673851 9.020000e-127 464.0
16 TraesCS4B01G089000 chr3B 96.085 281 9 2 484 763 636927874 636928153 1.510000e-124 457.0
17 TraesCS4B01G089000 chr3B 94.558 294 12 3 482 773 597050533 597050242 7.020000e-123 451.0
18 TraesCS4B01G089000 chr3B 83.200 125 20 1 28 151 349273087 349272963 3.760000e-21 113.0
19 TraesCS4B01G089000 chr7D 83.621 116 19 0 35 150 58775990 58775875 4.870000e-20 110.0
20 TraesCS4B01G089000 chr7D 77.863 131 19 9 28 152 545644453 545644579 6.390000e-09 73.1
21 TraesCS4B01G089000 chr6D 81.890 127 20 3 28 152 109272176 109272301 2.260000e-18 104.0
22 TraesCS4B01G089000 chr1B 80.315 127 24 1 27 152 282128106 282127980 1.360000e-15 95.3
23 TraesCS4B01G089000 chr2A 80.508 118 23 0 35 152 28026235 28026352 1.760000e-14 91.6
24 TraesCS4B01G089000 chr6B 87.342 79 9 1 27 104 198404868 198404946 6.340000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G089000 chr4B 90456669 90461269 4600 True 8497.000000 8497 100.000000 1 4601 1 chr4B.!!$R1 4600
1 TraesCS4B01G089000 chr4D 62116962 62121380 4418 False 2147.666667 4892 92.184667 1 4601 3 chr4D.!!$F1 4600
2 TraesCS4B01G089000 chr4A 535464016 535467875 3859 False 2881.000000 4604 93.963500 758 4579 2 chr4A.!!$F3 3821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 464 0.037160 ACGTTTAGGGGCGATTTGGT 59.963 50.0 0.0 0.0 0.00 3.67 F
483 486 0.107410 TCGGTGTTGGAGTTGCACTT 60.107 50.0 0.0 0.0 33.96 3.16 F
1062 1069 0.177604 ACCGTCGTATCTCCTCGTCT 59.822 55.0 0.0 0.0 0.00 4.18 F
2429 2464 0.316204 CTTTCCAGTTGCCTGCCTTG 59.684 55.0 0.0 0.0 37.38 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1646 0.602106 CTCTGTGTGTGCAGGGTCAG 60.602 60.0 0.0 0.00 37.12 3.51 R
2429 2464 1.093159 CCCAAAGCATGTCTCAGAGC 58.907 55.0 0.0 0.00 0.00 4.09 R
2767 2807 1.315981 TGGTGCACCAACAAGCGAAA 61.316 50.0 36.1 8.77 44.35 3.46 R
3861 4112 1.182667 GAACCCCAACCAGGTAATGC 58.817 55.0 0.0 0.00 36.27 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.004922 TCAAAATCCAAACCAGTGTGAAC 57.995 39.130 0.00 0.00 0.00 3.18
37 38 0.603975 GTGAACTGCCTCACCCTCAC 60.604 60.000 0.39 0.00 39.93 3.51
86 87 6.078456 TCTATCATCACCTCCCACAATTTT 57.922 37.500 0.00 0.00 0.00 1.82
132 134 4.071423 TCTTCGAACATCTGCAAAATGGA 58.929 39.130 12.09 0.00 0.00 3.41
139 141 5.534207 ACATCTGCAAAATGGACTTGAAA 57.466 34.783 12.09 0.00 0.00 2.69
142 144 4.681744 TCTGCAAAATGGACTTGAAACAC 58.318 39.130 0.00 0.00 0.00 3.32
162 164 2.180017 CAAATGCGCAGTGGAGCC 59.820 61.111 18.32 0.00 39.30 4.70
173 175 1.448540 GTGGAGCCACAGATGTCCG 60.449 63.158 14.53 0.00 45.53 4.79
179 181 1.021390 GCCACAGATGTCCGACAAGG 61.021 60.000 5.07 4.44 42.97 3.61
183 185 1.273606 ACAGATGTCCGACAAGGTCTG 59.726 52.381 21.37 21.37 42.89 3.51
218 221 1.443872 GGTACACCGTCAGCGTCTG 60.444 63.158 0.00 1.02 36.15 3.51
223 226 0.874175 CACCGTCAGCGTCTGTTTGA 60.874 55.000 6.72 0.00 36.15 2.69
224 227 0.179094 ACCGTCAGCGTCTGTTTGAA 60.179 50.000 6.72 0.00 36.15 2.69
233 236 1.532868 CGTCTGTTTGAAAGGGAGCAG 59.467 52.381 0.00 0.00 0.00 4.24
238 241 3.334691 TGTTTGAAAGGGAGCAGATACG 58.665 45.455 0.00 0.00 0.00 3.06
239 242 2.678336 GTTTGAAAGGGAGCAGATACGG 59.322 50.000 0.00 0.00 0.00 4.02
255 258 2.176247 ACGGAGTAATGGAGGATGGT 57.824 50.000 0.00 0.00 41.94 3.55
256 259 2.040178 ACGGAGTAATGGAGGATGGTC 58.960 52.381 0.00 0.00 41.94 4.02
275 278 2.109126 GGAGTGAGAATGTGCGGGC 61.109 63.158 0.00 0.00 0.00 6.13
277 280 0.674895 GAGTGAGAATGTGCGGGCTT 60.675 55.000 0.00 0.00 0.00 4.35
300 303 3.855689 CCATGGTTTTGGCTAAGTCTG 57.144 47.619 2.57 0.00 0.00 3.51
303 306 3.857157 TGGTTTTGGCTAAGTCTGAGT 57.143 42.857 0.00 0.00 0.00 3.41
313 316 0.318762 AAGTCTGAGTTGTCGGAGGC 59.681 55.000 0.00 0.00 38.86 4.70
332 335 1.672854 CCTACATGGCGAAGGTCCGA 61.673 60.000 0.00 0.00 0.00 4.55
335 338 1.375396 CATGGCGAAGGTCCGAACA 60.375 57.895 0.00 0.00 0.00 3.18
344 347 0.818040 AGGTCCGAACACCTGCAAAC 60.818 55.000 0.31 0.00 45.80 2.93
347 350 0.534203 TCCGAACACCTGCAAACCTC 60.534 55.000 0.00 0.00 0.00 3.85
357 360 1.756538 CTGCAAACCTCCCAACTTTGT 59.243 47.619 0.00 0.00 0.00 2.83
382 385 1.268625 GGTTTGTGGGATTTCGGACAC 59.731 52.381 0.00 0.00 0.00 3.67
388 391 0.392595 GGGATTTCGGACACCCAGAC 60.393 60.000 0.00 0.00 41.72 3.51
394 397 2.125106 GGACACCCAGACGCATCC 60.125 66.667 0.00 0.00 0.00 3.51
416 419 3.119743 CGTGAATGTTTGAGGCATGACAT 60.120 43.478 0.00 0.00 34.41 3.06
456 459 2.905681 GGGACGTTTAGGGGCGAT 59.094 61.111 0.00 0.00 0.00 4.58
457 460 1.222661 GGGACGTTTAGGGGCGATT 59.777 57.895 0.00 0.00 0.00 3.34
458 461 0.393402 GGGACGTTTAGGGGCGATTT 60.393 55.000 0.00 0.00 0.00 2.17
459 462 0.730840 GGACGTTTAGGGGCGATTTG 59.269 55.000 0.00 0.00 0.00 2.32
460 463 0.730840 GACGTTTAGGGGCGATTTGG 59.269 55.000 0.00 0.00 0.00 3.28
461 464 0.037160 ACGTTTAGGGGCGATTTGGT 59.963 50.000 0.00 0.00 0.00 3.67
462 465 0.450184 CGTTTAGGGGCGATTTGGTG 59.550 55.000 0.00 0.00 0.00 4.17
463 466 0.815095 GTTTAGGGGCGATTTGGTGG 59.185 55.000 0.00 0.00 0.00 4.61
464 467 0.406361 TTTAGGGGCGATTTGGTGGT 59.594 50.000 0.00 0.00 0.00 4.16
473 476 0.596082 GATTTGGTGGTCGGTGTTGG 59.404 55.000 0.00 0.00 0.00 3.77
481 484 1.647084 GTCGGTGTTGGAGTTGCAC 59.353 57.895 0.00 0.00 0.00 4.57
482 485 0.814010 GTCGGTGTTGGAGTTGCACT 60.814 55.000 0.00 0.00 33.96 4.40
483 486 0.107410 TCGGTGTTGGAGTTGCACTT 60.107 50.000 0.00 0.00 33.96 3.16
484 487 1.139256 TCGGTGTTGGAGTTGCACTTA 59.861 47.619 0.00 0.00 33.96 2.24
485 488 1.531149 CGGTGTTGGAGTTGCACTTAG 59.469 52.381 0.00 0.00 33.96 2.18
486 489 2.805295 CGGTGTTGGAGTTGCACTTAGA 60.805 50.000 0.00 0.00 33.96 2.10
487 490 2.548480 GGTGTTGGAGTTGCACTTAGAC 59.452 50.000 0.00 0.00 33.96 2.59
488 491 3.467803 GTGTTGGAGTTGCACTTAGACT 58.532 45.455 0.00 0.00 0.00 3.24
489 492 4.502604 GGTGTTGGAGTTGCACTTAGACTA 60.503 45.833 0.00 0.00 33.96 2.59
490 493 4.686554 GTGTTGGAGTTGCACTTAGACTAG 59.313 45.833 0.00 0.00 0.00 2.57
491 494 3.594603 TGGAGTTGCACTTAGACTAGC 57.405 47.619 0.00 0.00 0.00 3.42
492 495 2.233922 TGGAGTTGCACTTAGACTAGCC 59.766 50.000 0.00 0.00 0.00 3.93
493 496 2.233922 GGAGTTGCACTTAGACTAGCCA 59.766 50.000 0.00 0.00 0.00 4.75
494 497 3.118592 GGAGTTGCACTTAGACTAGCCAT 60.119 47.826 0.00 0.00 0.00 4.40
495 498 4.099573 GGAGTTGCACTTAGACTAGCCATA 59.900 45.833 0.00 0.00 0.00 2.74
496 499 5.395324 GGAGTTGCACTTAGACTAGCCATAA 60.395 44.000 0.00 0.00 0.00 1.90
497 500 6.240549 AGTTGCACTTAGACTAGCCATAAT 57.759 37.500 0.00 0.00 0.00 1.28
498 501 6.051717 AGTTGCACTTAGACTAGCCATAATG 58.948 40.000 0.00 0.00 0.00 1.90
499 502 4.960938 TGCACTTAGACTAGCCATAATGG 58.039 43.478 0.00 0.00 41.55 3.16
500 503 4.202357 TGCACTTAGACTAGCCATAATGGG 60.202 45.833 0.00 0.00 38.19 4.00
501 504 4.040461 GCACTTAGACTAGCCATAATGGGA 59.960 45.833 0.00 0.00 38.19 4.37
502 505 5.788450 CACTTAGACTAGCCATAATGGGAG 58.212 45.833 0.00 0.00 38.19 4.30
503 506 5.305644 CACTTAGACTAGCCATAATGGGAGT 59.694 44.000 0.00 0.00 38.19 3.85
504 507 6.493802 CACTTAGACTAGCCATAATGGGAGTA 59.506 42.308 0.00 0.00 38.19 2.59
505 508 7.015292 CACTTAGACTAGCCATAATGGGAGTAA 59.985 40.741 0.00 0.00 38.19 2.24
506 509 5.810080 AGACTAGCCATAATGGGAGTAAC 57.190 43.478 0.00 0.00 38.19 2.50
507 510 5.468658 AGACTAGCCATAATGGGAGTAACT 58.531 41.667 0.00 0.00 38.19 2.24
508 511 5.905913 AGACTAGCCATAATGGGAGTAACTT 59.094 40.000 0.00 0.00 38.19 2.66
509 512 6.042208 AGACTAGCCATAATGGGAGTAACTTC 59.958 42.308 0.00 0.00 38.19 3.01
510 513 4.073293 AGCCATAATGGGAGTAACTTCG 57.927 45.455 0.00 0.00 38.19 3.79
511 514 3.139077 GCCATAATGGGAGTAACTTCGG 58.861 50.000 0.00 0.00 38.19 4.30
512 515 3.433173 GCCATAATGGGAGTAACTTCGGT 60.433 47.826 0.00 0.00 38.19 4.69
513 516 4.202284 GCCATAATGGGAGTAACTTCGGTA 60.202 45.833 0.00 0.00 38.19 4.02
514 517 5.539048 CCATAATGGGAGTAACTTCGGTAG 58.461 45.833 0.00 0.00 32.67 3.18
515 518 5.070047 CCATAATGGGAGTAACTTCGGTAGT 59.930 44.000 0.00 0.00 34.05 2.73
516 519 6.266103 CCATAATGGGAGTAACTTCGGTAGTA 59.734 42.308 0.00 0.00 32.28 1.82
517 520 7.201938 CCATAATGGGAGTAACTTCGGTAGTAA 60.202 40.741 0.00 0.00 32.28 2.24
518 521 5.588958 ATGGGAGTAACTTCGGTAGTAAC 57.411 43.478 0.00 0.00 35.54 2.50
519 522 4.406456 TGGGAGTAACTTCGGTAGTAACA 58.594 43.478 0.00 0.00 35.54 2.41
520 523 5.018809 TGGGAGTAACTTCGGTAGTAACAT 58.981 41.667 0.00 0.00 35.54 2.71
521 524 5.126061 TGGGAGTAACTTCGGTAGTAACATC 59.874 44.000 0.00 0.00 35.54 3.06
522 525 5.269313 GGAGTAACTTCGGTAGTAACATCG 58.731 45.833 0.00 0.00 35.54 3.84
523 526 5.065218 GGAGTAACTTCGGTAGTAACATCGA 59.935 44.000 0.00 0.00 35.54 3.59
524 527 6.116680 AGTAACTTCGGTAGTAACATCGAG 57.883 41.667 0.00 0.00 35.54 4.04
525 528 5.645497 AGTAACTTCGGTAGTAACATCGAGT 59.355 40.000 0.00 0.00 35.54 4.18
526 529 4.612932 ACTTCGGTAGTAACATCGAGTC 57.387 45.455 0.00 0.00 34.56 3.36
527 530 3.376546 ACTTCGGTAGTAACATCGAGTCC 59.623 47.826 0.00 0.00 34.56 3.85
528 531 2.989909 TCGGTAGTAACATCGAGTCCA 58.010 47.619 0.00 0.00 0.00 4.02
529 532 3.346315 TCGGTAGTAACATCGAGTCCAA 58.654 45.455 0.00 0.00 0.00 3.53
530 533 3.127548 TCGGTAGTAACATCGAGTCCAAC 59.872 47.826 0.00 0.00 0.00 3.77
531 534 3.128242 CGGTAGTAACATCGAGTCCAACT 59.872 47.826 0.00 0.00 0.00 3.16
532 535 4.670347 GGTAGTAACATCGAGTCCAACTC 58.330 47.826 0.00 0.00 41.71 3.01
533 536 4.157289 GGTAGTAACATCGAGTCCAACTCA 59.843 45.833 7.78 0.00 45.30 3.41
534 537 4.442375 AGTAACATCGAGTCCAACTCAG 57.558 45.455 7.78 1.37 45.30 3.35
535 538 3.827302 AGTAACATCGAGTCCAACTCAGT 59.173 43.478 7.78 0.61 45.30 3.41
536 539 5.008331 AGTAACATCGAGTCCAACTCAGTA 58.992 41.667 7.78 0.00 45.30 2.74
537 540 4.866508 AACATCGAGTCCAACTCAGTAA 57.133 40.909 7.78 0.00 45.30 2.24
538 541 4.866508 ACATCGAGTCCAACTCAGTAAA 57.133 40.909 7.78 0.00 45.30 2.01
539 542 5.407407 ACATCGAGTCCAACTCAGTAAAT 57.593 39.130 7.78 0.00 45.30 1.40
540 543 5.794894 ACATCGAGTCCAACTCAGTAAATT 58.205 37.500 7.78 0.00 45.30 1.82
541 544 6.231211 ACATCGAGTCCAACTCAGTAAATTT 58.769 36.000 7.78 0.00 45.30 1.82
542 545 6.147821 ACATCGAGTCCAACTCAGTAAATTTG 59.852 38.462 0.00 0.00 45.30 2.32
543 546 4.451096 TCGAGTCCAACTCAGTAAATTTGC 59.549 41.667 0.00 0.00 45.30 3.68
544 547 4.452455 CGAGTCCAACTCAGTAAATTTGCT 59.548 41.667 2.58 2.58 45.30 3.91
545 548 5.049405 CGAGTCCAACTCAGTAAATTTGCTT 60.049 40.000 6.00 0.00 45.30 3.91
546 549 6.147164 CGAGTCCAACTCAGTAAATTTGCTTA 59.853 38.462 6.00 0.00 45.30 3.09
547 550 7.148407 CGAGTCCAACTCAGTAAATTTGCTTAT 60.148 37.037 6.00 0.00 45.30 1.73
548 551 7.820648 AGTCCAACTCAGTAAATTTGCTTATG 58.179 34.615 6.00 3.78 0.00 1.90
549 552 7.448469 AGTCCAACTCAGTAAATTTGCTTATGT 59.552 33.333 6.00 3.37 0.00 2.29
550 553 7.538678 GTCCAACTCAGTAAATTTGCTTATGTG 59.461 37.037 6.00 3.50 0.00 3.21
551 554 6.808212 CCAACTCAGTAAATTTGCTTATGTGG 59.192 38.462 6.00 8.36 0.00 4.17
552 555 5.954335 ACTCAGTAAATTTGCTTATGTGGC 58.046 37.500 6.00 0.00 0.00 5.01
553 556 5.476599 ACTCAGTAAATTTGCTTATGTGGCA 59.523 36.000 6.00 0.00 37.97 4.92
554 557 6.015519 ACTCAGTAAATTTGCTTATGTGGCAA 60.016 34.615 6.00 0.00 46.12 4.52
555 558 6.934056 TCAGTAAATTTGCTTATGTGGCAAT 58.066 32.000 6.00 0.00 46.81 3.56
556 559 6.812656 TCAGTAAATTTGCTTATGTGGCAATG 59.187 34.615 6.00 0.00 46.81 2.82
557 560 6.812656 CAGTAAATTTGCTTATGTGGCAATGA 59.187 34.615 6.00 0.00 46.81 2.57
558 561 7.009815 CAGTAAATTTGCTTATGTGGCAATGAG 59.990 37.037 6.00 0.00 46.81 2.90
559 562 5.410355 AATTTGCTTATGTGGCAATGAGT 57.590 34.783 2.01 0.00 46.81 3.41
560 563 4.870123 TTTGCTTATGTGGCAATGAGTT 57.130 36.364 2.01 0.00 46.81 3.01
561 564 5.973899 TTTGCTTATGTGGCAATGAGTTA 57.026 34.783 2.01 0.00 46.81 2.24
562 565 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
563 566 6.528537 TTGCTTATGTGGCAATGAGTTAAT 57.471 33.333 0.00 0.00 43.50 1.40
564 567 5.893687 TGCTTATGTGGCAATGAGTTAATG 58.106 37.500 0.00 0.00 36.71 1.90
565 568 5.651576 TGCTTATGTGGCAATGAGTTAATGA 59.348 36.000 0.00 0.00 36.71 2.57
566 569 6.183360 TGCTTATGTGGCAATGAGTTAATGAG 60.183 38.462 0.00 0.00 36.71 2.90
567 570 6.698008 TTATGTGGCAATGAGTTAATGAGG 57.302 37.500 0.00 0.00 0.00 3.86
568 571 4.299586 TGTGGCAATGAGTTAATGAGGA 57.700 40.909 0.00 0.00 0.00 3.71
569 572 4.264253 TGTGGCAATGAGTTAATGAGGAG 58.736 43.478 0.00 0.00 0.00 3.69
570 573 4.019411 TGTGGCAATGAGTTAATGAGGAGA 60.019 41.667 0.00 0.00 0.00 3.71
571 574 4.574013 GTGGCAATGAGTTAATGAGGAGAG 59.426 45.833 0.00 0.00 0.00 3.20
572 575 4.471025 TGGCAATGAGTTAATGAGGAGAGA 59.529 41.667 0.00 0.00 0.00 3.10
573 576 5.131642 TGGCAATGAGTTAATGAGGAGAGAT 59.868 40.000 0.00 0.00 0.00 2.75
574 577 5.469421 GGCAATGAGTTAATGAGGAGAGATG 59.531 44.000 0.00 0.00 0.00 2.90
575 578 6.054295 GCAATGAGTTAATGAGGAGAGATGT 58.946 40.000 0.00 0.00 0.00 3.06
576 579 7.212976 GCAATGAGTTAATGAGGAGAGATGTA 58.787 38.462 0.00 0.00 0.00 2.29
577 580 7.384660 GCAATGAGTTAATGAGGAGAGATGTAG 59.615 40.741 0.00 0.00 0.00 2.74
578 581 8.420222 CAATGAGTTAATGAGGAGAGATGTAGT 58.580 37.037 0.00 0.00 0.00 2.73
579 582 9.647918 AATGAGTTAATGAGGAGAGATGTAGTA 57.352 33.333 0.00 0.00 0.00 1.82
580 583 8.453238 TGAGTTAATGAGGAGAGATGTAGTAC 57.547 38.462 0.00 0.00 0.00 2.73
581 584 8.275758 TGAGTTAATGAGGAGAGATGTAGTACT 58.724 37.037 0.00 0.00 0.00 2.73
582 585 9.781633 GAGTTAATGAGGAGAGATGTAGTACTA 57.218 37.037 0.00 0.00 0.00 1.82
583 586 9.787435 AGTTAATGAGGAGAGATGTAGTACTAG 57.213 37.037 1.87 0.00 0.00 2.57
584 587 9.563748 GTTAATGAGGAGAGATGTAGTACTAGT 57.436 37.037 1.87 0.00 0.00 2.57
587 590 9.563748 AATGAGGAGAGATGTAGTACTAGTAAC 57.436 37.037 3.61 0.77 0.00 2.50
588 591 8.321621 TGAGGAGAGATGTAGTACTAGTAACT 57.678 38.462 3.61 7.14 0.00 2.24
589 592 8.770322 TGAGGAGAGATGTAGTACTAGTAACTT 58.230 37.037 3.61 0.00 0.00 2.66
592 595 8.992073 GGAGAGATGTAGTACTAGTAACTTAGC 58.008 40.741 3.61 0.00 0.00 3.09
593 596 9.768662 GAGAGATGTAGTACTAGTAACTTAGCT 57.231 37.037 3.61 0.33 0.00 3.32
610 613 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
611 614 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
612 615 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
613 616 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
615 618 7.036220 AGCTAGTTACTGTAACATCACATGTC 58.964 38.462 27.12 9.51 44.07 3.06
616 619 6.255887 GCTAGTTACTGTAACATCACATGTCC 59.744 42.308 27.12 1.73 44.07 4.02
617 620 5.488341 AGTTACTGTAACATCACATGTCCC 58.512 41.667 27.12 1.55 44.07 4.46
618 621 5.012664 AGTTACTGTAACATCACATGTCCCA 59.987 40.000 27.12 0.00 44.07 4.37
619 622 4.365514 ACTGTAACATCACATGTCCCAA 57.634 40.909 0.00 0.00 44.07 4.12
620 623 4.922206 ACTGTAACATCACATGTCCCAAT 58.078 39.130 0.00 0.00 44.07 3.16
621 624 4.701651 ACTGTAACATCACATGTCCCAATG 59.298 41.667 0.00 0.45 44.07 2.82
622 625 3.443329 TGTAACATCACATGTCCCAATGC 59.557 43.478 0.00 0.00 44.07 3.56
623 626 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
624 627 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
625 628 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
626 629 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
627 630 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
628 631 6.069994 ACATCACATGTCCCAATGCAATATA 58.930 36.000 0.00 0.00 39.92 0.86
629 632 6.550481 ACATCACATGTCCCAATGCAATATAA 59.450 34.615 0.00 0.00 39.92 0.98
630 633 6.638096 TCACATGTCCCAATGCAATATAAG 57.362 37.500 0.00 0.00 0.00 1.73
631 634 6.128486 TCACATGTCCCAATGCAATATAAGT 58.872 36.000 0.00 0.00 0.00 2.24
632 635 6.262944 TCACATGTCCCAATGCAATATAAGTC 59.737 38.462 0.00 0.00 0.00 3.01
633 636 6.263842 CACATGTCCCAATGCAATATAAGTCT 59.736 38.462 0.00 0.00 0.00 3.24
634 637 7.445096 CACATGTCCCAATGCAATATAAGTCTA 59.555 37.037 0.00 0.00 0.00 2.59
635 638 8.166061 ACATGTCCCAATGCAATATAAGTCTAT 58.834 33.333 0.00 0.00 0.00 1.98
636 639 9.671279 CATGTCCCAATGCAATATAAGTCTATA 57.329 33.333 0.00 0.00 0.00 1.31
638 641 9.502091 TGTCCCAATGCAATATAAGTCTATAAC 57.498 33.333 0.00 0.00 0.00 1.89
639 642 8.947115 GTCCCAATGCAATATAAGTCTATAACC 58.053 37.037 0.00 0.00 0.00 2.85
640 643 8.890472 TCCCAATGCAATATAAGTCTATAACCT 58.110 33.333 0.00 0.00 0.00 3.50
660 663 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
661 664 7.174107 ACCTAATAAATGAAGCTTTGCATGT 57.826 32.000 0.00 0.00 0.00 3.21
662 665 7.614494 ACCTAATAAATGAAGCTTTGCATGTT 58.386 30.769 0.00 1.51 0.00 2.71
663 666 8.748412 ACCTAATAAATGAAGCTTTGCATGTTA 58.252 29.630 0.00 3.50 0.00 2.41
664 667 9.023967 CCTAATAAATGAAGCTTTGCATGTTAC 57.976 33.333 0.00 0.00 0.00 2.50
665 668 7.832503 AATAAATGAAGCTTTGCATGTTACC 57.167 32.000 0.00 0.00 0.00 2.85
666 669 4.870123 AATGAAGCTTTGCATGTTACCA 57.130 36.364 0.00 0.00 0.00 3.25
667 670 3.641437 TGAAGCTTTGCATGTTACCAC 57.359 42.857 0.00 0.00 0.00 4.16
668 671 2.954989 TGAAGCTTTGCATGTTACCACA 59.045 40.909 0.00 0.00 37.31 4.17
669 672 3.243367 TGAAGCTTTGCATGTTACCACAC 60.243 43.478 0.00 0.00 35.03 3.82
670 673 2.586425 AGCTTTGCATGTTACCACACT 58.414 42.857 0.00 0.00 35.03 3.55
671 674 2.958355 AGCTTTGCATGTTACCACACTT 59.042 40.909 0.00 0.00 35.03 3.16
672 675 4.141287 AGCTTTGCATGTTACCACACTTA 58.859 39.130 0.00 0.00 35.03 2.24
673 676 4.766891 AGCTTTGCATGTTACCACACTTAT 59.233 37.500 0.00 0.00 35.03 1.73
674 677 5.943416 AGCTTTGCATGTTACCACACTTATA 59.057 36.000 0.00 0.00 35.03 0.98
675 678 6.603201 AGCTTTGCATGTTACCACACTTATAT 59.397 34.615 0.00 0.00 35.03 0.86
676 679 7.122650 AGCTTTGCATGTTACCACACTTATATT 59.877 33.333 0.00 0.00 35.03 1.28
677 680 8.402472 GCTTTGCATGTTACCACACTTATATTA 58.598 33.333 0.00 0.00 35.03 0.98
678 681 9.716507 CTTTGCATGTTACCACACTTATATTAC 57.283 33.333 0.00 0.00 35.03 1.89
679 682 9.456147 TTTGCATGTTACCACACTTATATTACT 57.544 29.630 0.00 0.00 35.03 2.24
681 684 9.537192 TGCATGTTACCACACTTATATTACTAC 57.463 33.333 0.00 0.00 35.03 2.73
682 685 8.985805 GCATGTTACCACACTTATATTACTACC 58.014 37.037 0.00 0.00 35.03 3.18
683 686 9.485206 CATGTTACCACACTTATATTACTACCC 57.515 37.037 0.00 0.00 35.03 3.69
684 687 8.606754 TGTTACCACACTTATATTACTACCCA 57.393 34.615 0.00 0.00 0.00 4.51
685 688 8.477256 TGTTACCACACTTATATTACTACCCAC 58.523 37.037 0.00 0.00 0.00 4.61
686 689 8.699130 GTTACCACACTTATATTACTACCCACT 58.301 37.037 0.00 0.00 0.00 4.00
687 690 9.934784 TTACCACACTTATATTACTACCCACTA 57.065 33.333 0.00 0.00 0.00 2.74
689 692 8.867097 ACCACACTTATATTACTACCCACTATG 58.133 37.037 0.00 0.00 0.00 2.23
690 693 9.085645 CCACACTTATATTACTACCCACTATGA 57.914 37.037 0.00 0.00 0.00 2.15
694 697 9.893975 ACTTATATTACTACCCACTATGAAGGT 57.106 33.333 0.00 0.00 37.69 3.50
702 705 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
703 706 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
704 707 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
705 708 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
706 709 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
707 710 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
708 711 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
710 713 9.796180 ACTATGAAGGTAGTAACATAGACTAGG 57.204 37.037 16.37 0.00 42.41 3.02
711 714 9.233649 CTATGAAGGTAGTAACATAGACTAGGG 57.766 40.741 0.00 0.00 42.41 3.53
712 715 7.217028 TGAAGGTAGTAACATAGACTAGGGA 57.783 40.000 0.00 0.00 30.08 4.20
713 716 7.823635 TGAAGGTAGTAACATAGACTAGGGAT 58.176 38.462 0.00 0.00 30.08 3.85
714 717 8.952602 TGAAGGTAGTAACATAGACTAGGGATA 58.047 37.037 0.00 0.00 30.08 2.59
715 718 9.978336 GAAGGTAGTAACATAGACTAGGGATAT 57.022 37.037 0.00 0.00 30.08 1.63
716 719 9.756571 AAGGTAGTAACATAGACTAGGGATATG 57.243 37.037 0.00 2.39 33.93 1.78
717 720 8.902881 AGGTAGTAACATAGACTAGGGATATGT 58.097 37.037 9.65 9.65 40.86 2.29
718 721 8.958506 GGTAGTAACATAGACTAGGGATATGTG 58.041 40.741 14.02 0.00 39.46 3.21
719 722 9.517868 GTAGTAACATAGACTAGGGATATGTGT 57.482 37.037 14.02 9.12 39.46 3.72
723 726 8.958060 AACATAGACTAGGGATATGTGTATGT 57.042 34.615 14.02 8.61 46.13 2.29
724 727 8.958060 ACATAGACTAGGGATATGTGTATGTT 57.042 34.615 13.04 0.00 43.68 2.71
729 732 9.742144 AGACTAGGGATATGTGTATGTTACTAG 57.258 37.037 0.00 0.00 0.00 2.57
730 733 9.517868 GACTAGGGATATGTGTATGTTACTAGT 57.482 37.037 0.00 0.00 39.81 2.57
731 734 9.298250 ACTAGGGATATGTGTATGTTACTAGTG 57.702 37.037 5.39 0.00 36.87 2.74
732 735 9.298250 CTAGGGATATGTGTATGTTACTAGTGT 57.702 37.037 5.39 0.00 0.00 3.55
734 737 9.824216 AGGGATATGTGTATGTTACTAGTGTAT 57.176 33.333 5.39 0.00 0.00 2.29
735 738 9.856488 GGGATATGTGTATGTTACTAGTGTATG 57.144 37.037 5.39 0.00 0.00 2.39
745 748 8.818622 ATGTTACTAGTGTATGTTACTCTCCA 57.181 34.615 5.39 0.00 34.65 3.86
746 749 8.818622 TGTTACTAGTGTATGTTACTCTCCAT 57.181 34.615 5.39 0.00 34.65 3.41
747 750 9.251440 TGTTACTAGTGTATGTTACTCTCCATT 57.749 33.333 5.39 0.00 34.65 3.16
748 751 9.517609 GTTACTAGTGTATGTTACTCTCCATTG 57.482 37.037 5.39 0.00 34.65 2.82
749 752 7.719871 ACTAGTGTATGTTACTCTCCATTGT 57.280 36.000 0.00 0.00 34.65 2.71
750 753 7.548097 ACTAGTGTATGTTACTCTCCATTGTG 58.452 38.462 0.00 0.00 34.65 3.33
751 754 5.734720 AGTGTATGTTACTCTCCATTGTGG 58.265 41.667 0.00 0.00 39.43 4.17
752 755 4.332819 GTGTATGTTACTCTCCATTGTGGC 59.667 45.833 0.00 0.00 37.47 5.01
753 756 4.225042 TGTATGTTACTCTCCATTGTGGCT 59.775 41.667 0.00 0.00 37.47 4.75
754 757 5.423931 TGTATGTTACTCTCCATTGTGGCTA 59.576 40.000 0.00 0.00 37.47 3.93
755 758 4.471904 TGTTACTCTCCATTGTGGCTAG 57.528 45.455 0.00 0.00 37.47 3.42
756 759 3.838317 TGTTACTCTCCATTGTGGCTAGT 59.162 43.478 7.76 7.76 37.47 2.57
790 793 2.521996 CACGTCATCGGTTCGTTCATA 58.478 47.619 0.00 0.00 41.85 2.15
821 824 3.537206 GACCACTCAGGCCGCAACT 62.537 63.158 0.00 0.00 43.14 3.16
823 826 2.281070 CACTCAGGCCGCAACTGT 60.281 61.111 0.00 0.00 37.25 3.55
1035 1042 4.052229 ACAACCGCGTCCTCCTCG 62.052 66.667 4.92 0.00 0.00 4.63
1047 1054 1.977544 CTCCTCGTTCCTCCACCGT 60.978 63.158 0.00 0.00 0.00 4.83
1062 1069 0.177604 ACCGTCGTATCTCCTCGTCT 59.822 55.000 0.00 0.00 0.00 4.18
1110 1123 0.822121 ACCTGGTTTTCTTCCACGCC 60.822 55.000 0.00 0.00 0.00 5.68
1314 1327 1.207791 AGGATGAGGTCTTCGCCATT 58.792 50.000 0.00 0.00 0.00 3.16
1329 1342 1.299648 CATTGAGAACCGCTCCCCA 59.700 57.895 0.00 0.00 43.26 4.96
1409 1422 2.660189 GCAAAATGCCTGCATGTACT 57.340 45.000 5.22 0.00 39.69 2.73
1410 1423 3.781079 GCAAAATGCCTGCATGTACTA 57.219 42.857 5.22 0.00 39.69 1.82
1422 1435 5.468746 CCTGCATGTACTAGTCTAGTCTCTC 59.531 48.000 15.94 6.63 40.14 3.20
1428 1441 5.602145 TGTACTAGTCTAGTCTCTCTACCCC 59.398 48.000 15.94 0.00 40.14 4.95
1430 1443 3.937778 AGTCTAGTCTCTCTACCCCAC 57.062 52.381 0.00 0.00 0.00 4.61
1431 1444 3.466836 AGTCTAGTCTCTCTACCCCACT 58.533 50.000 0.00 0.00 0.00 4.00
1432 1445 4.633351 AGTCTAGTCTCTCTACCCCACTA 58.367 47.826 0.00 0.00 0.00 2.74
1433 1446 5.038279 AGTCTAGTCTCTCTACCCCACTAA 58.962 45.833 0.00 0.00 0.00 2.24
1434 1447 5.491800 AGTCTAGTCTCTCTACCCCACTAAA 59.508 44.000 0.00 0.00 0.00 1.85
1435 1448 5.824097 GTCTAGTCTCTCTACCCCACTAAAG 59.176 48.000 0.00 0.00 0.00 1.85
1436 1449 4.678538 AGTCTCTCTACCCCACTAAAGT 57.321 45.455 0.00 0.00 0.00 2.66
1437 1450 5.013258 AGTCTCTCTACCCCACTAAAGTT 57.987 43.478 0.00 0.00 0.00 2.66
1438 1451 4.773149 AGTCTCTCTACCCCACTAAAGTTG 59.227 45.833 0.00 0.00 0.00 3.16
1444 1457 5.027460 TCTACCCCACTAAAGTTGCTCATA 58.973 41.667 0.00 0.00 0.00 2.15
1470 1485 5.008712 GTGTGACTCTTTTGGAAGGTTAAGG 59.991 44.000 0.00 0.00 33.56 2.69
1471 1486 5.131067 GTGACTCTTTTGGAAGGTTAAGGT 58.869 41.667 0.00 0.00 33.56 3.50
1472 1487 5.238868 GTGACTCTTTTGGAAGGTTAAGGTC 59.761 44.000 0.00 0.00 33.56 3.85
1473 1488 5.104277 TGACTCTTTTGGAAGGTTAAGGTCA 60.104 40.000 0.00 0.00 33.56 4.02
1474 1489 5.131067 ACTCTTTTGGAAGGTTAAGGTCAC 58.869 41.667 0.00 0.00 33.56 3.67
1475 1490 5.118729 TCTTTTGGAAGGTTAAGGTCACA 57.881 39.130 0.00 0.00 33.56 3.58
1476 1491 4.885325 TCTTTTGGAAGGTTAAGGTCACAC 59.115 41.667 0.00 0.00 33.56 3.82
1477 1492 3.935818 TTGGAAGGTTAAGGTCACACA 57.064 42.857 0.00 0.00 0.00 3.72
1533 1548 9.694137 ACAGAATAATAGAAGTATAGGCGAAAC 57.306 33.333 0.00 0.00 0.00 2.78
1536 1551 8.828688 AATAATAGAAGTATAGGCGAAACACC 57.171 34.615 0.00 0.00 0.00 4.16
1537 1552 5.864418 ATAGAAGTATAGGCGAAACACCA 57.136 39.130 0.00 0.00 0.00 4.17
1538 1553 3.858247 AGAAGTATAGGCGAAACACCAC 58.142 45.455 0.00 0.00 0.00 4.16
1539 1554 3.514309 AGAAGTATAGGCGAAACACCACT 59.486 43.478 0.00 0.00 0.00 4.00
1540 1555 3.975168 AGTATAGGCGAAACACCACTT 57.025 42.857 0.00 0.00 0.00 3.16
1541 1556 3.858247 AGTATAGGCGAAACACCACTTC 58.142 45.455 0.00 0.00 0.00 3.01
1579 1594 9.489084 GATACATACTAAATGGTGCATGTAGAA 57.511 33.333 0.00 0.00 34.52 2.10
1644 1662 0.833949 TAACTGACCCTGCACACACA 59.166 50.000 0.00 0.00 0.00 3.72
1696 1714 0.879765 ACATGTCTCTGCTTTGCTGC 59.120 50.000 0.00 0.00 0.00 5.25
1733 1755 7.116075 TGTATCTGCTATGGGTTTTGTGTATT 58.884 34.615 0.00 0.00 0.00 1.89
1795 1818 5.750067 CCTGTTTTCATTGGACAGTCTTTTG 59.250 40.000 0.00 0.00 39.23 2.44
1802 1825 5.827797 TCATTGGACAGTCTTTTGTTTAGCT 59.172 36.000 0.00 0.00 0.00 3.32
1838 1862 1.262417 TTCTGATCGGCAGGTGTGTA 58.738 50.000 0.00 0.00 44.98 2.90
1997 2023 6.151817 GCTGAGATGAAAATAGTTGGGAAAGT 59.848 38.462 0.00 0.00 0.00 2.66
2004 2030 6.553100 TGAAAATAGTTGGGAAAGTTGGACAT 59.447 34.615 0.00 0.00 0.00 3.06
2010 2036 1.273327 GGGAAAGTTGGACATGCAAGG 59.727 52.381 0.00 0.00 0.00 3.61
2151 2178 5.184864 TGTCAGAGTGTTGGTGTTCAATTTT 59.815 36.000 0.00 0.00 37.73 1.82
2180 2207 4.924305 ACATGTCATTGACAGTTTTGCT 57.076 36.364 22.82 3.56 46.04 3.91
2240 2267 6.983906 ATTCCATGTCATAGGGGATTTTTC 57.016 37.500 0.00 0.00 0.00 2.29
2392 2423 6.878317 AGTTCGAATAGGAGTGATTTCATGA 58.122 36.000 0.00 0.00 0.00 3.07
2429 2464 0.316204 CTTTCCAGTTGCCTGCCTTG 59.684 55.000 0.00 0.00 37.38 3.61
2448 2483 1.093159 GCTCTGAGACATGCTTTGGG 58.907 55.000 9.28 0.00 0.00 4.12
2572 2610 7.223193 CCAAATATGTGAAGGTACATGCAATTG 59.777 37.037 0.00 0.00 41.18 2.32
2767 2807 9.495572 CAAAGTTCTAGAGGTTTCAGATAGTTT 57.504 33.333 0.00 0.00 0.00 2.66
2800 2840 1.818060 TGCACCATATCACTTTGCCAC 59.182 47.619 0.00 0.00 31.94 5.01
3311 3354 5.688814 TTAGATGATCCCTGCATGGATAG 57.311 43.478 21.89 0.00 45.25 2.08
3423 3466 3.593442 TTTCAGGTGAGAATGGTGGTT 57.407 42.857 0.00 0.00 0.00 3.67
3438 3481 2.618045 GGTGGTTGATGAAGGTGTAGGG 60.618 54.545 0.00 0.00 0.00 3.53
3692 3735 2.606717 TACAGTTGAGTACACGAGCG 57.393 50.000 0.00 0.00 0.00 5.03
3768 3811 6.013379 TCTTCTACTCACACTCTTGGATCTT 58.987 40.000 0.00 0.00 0.00 2.40
3904 4155 6.370718 TCATGTGAGTTTCAAGATCATGTGAG 59.629 38.462 0.00 0.00 32.38 3.51
3945 4197 4.455877 AGGAAACCAAGAAAGTAGATTGCG 59.544 41.667 0.00 0.00 0.00 4.85
3986 4238 2.749621 CAAAGCTGATGGTACCAGGAAC 59.250 50.000 21.41 9.99 32.51 3.62
4064 4316 3.648545 GCCAGATACTATGGGGAGAAAGT 59.351 47.826 0.00 0.00 38.33 2.66
4072 4324 6.936968 ACTATGGGGAGAAAGTACCATATC 57.063 41.667 0.00 0.00 43.03 1.63
4161 4415 5.537295 GTGGTATTGAAGGTTACCCAAACTT 59.463 40.000 0.00 0.00 44.55 2.66
4199 4453 7.523415 TCACCTTTTGTAAGATAGGTCCTTTT 58.477 34.615 0.00 0.00 38.93 2.27
4242 4496 7.690256 AGTTAGATAGGAACCACAAAATGAGT 58.310 34.615 0.00 0.00 0.00 3.41
4435 4691 2.754552 TCAGAAATCCCATTTTCCTGCG 59.245 45.455 0.00 0.00 36.47 5.18
4436 4692 2.102578 AGAAATCCCATTTTCCTGCGG 58.897 47.619 0.00 0.00 36.47 5.69
4442 4698 1.079888 CATTTTCCTGCGGTTGGCC 60.080 57.895 0.00 0.00 42.61 5.36
4568 4824 6.486993 ACCTGAAAGAAGTGGTTTATTCACTC 59.513 38.462 0.00 0.00 43.82 3.51
4582 4838 7.648112 GGTTTATTCACTCAAACACTTCTTTCC 59.352 37.037 0.00 0.00 36.56 3.13
4585 4841 3.118555 TCACTCAAACACTTCTTTCCGGA 60.119 43.478 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.805192 CAGTTCACACTGGTTTGGATTTTG 59.195 41.667 0.00 0.00 46.10 2.44
23 24 0.325933 TGATTGTGAGGGTGAGGCAG 59.674 55.000 0.00 0.00 0.00 4.85
56 57 4.141642 TGGGAGGTGATGATAGATTGTGTG 60.142 45.833 0.00 0.00 0.00 3.82
108 110 4.320421 CCATTTTGCAGATGTTCGAAGACA 60.320 41.667 0.00 0.00 34.32 3.41
115 117 5.125100 TCAAGTCCATTTTGCAGATGTTC 57.875 39.130 10.20 4.49 0.00 3.18
120 122 4.681744 GTGTTTCAAGTCCATTTTGCAGA 58.318 39.130 0.00 0.00 0.00 4.26
132 134 1.851658 GCATTTGGCGTGTTTCAAGT 58.148 45.000 0.00 0.00 0.00 3.16
152 154 1.002868 ACATCTGTGGCTCCACTGC 60.003 57.895 18.72 0.00 46.30 4.40
154 156 1.892819 CGGACATCTGTGGCTCCACT 61.893 60.000 18.72 0.00 46.30 4.00
155 157 1.448540 CGGACATCTGTGGCTCCAC 60.449 63.158 11.95 11.95 46.33 4.02
162 164 1.273606 AGACCTTGTCGGACATCTGTG 59.726 52.381 12.26 1.99 37.67 3.66
165 167 0.898320 CCAGACCTTGTCGGACATCT 59.102 55.000 12.26 9.18 37.67 2.90
168 170 1.458777 ACCCAGACCTTGTCGGACA 60.459 57.895 6.76 6.76 37.67 4.02
173 175 2.034221 GCCCACCCAGACCTTGTC 59.966 66.667 0.00 0.00 0.00 3.18
197 199 0.801067 GACGCTGACGGTGTACCATC 60.801 60.000 0.00 0.00 46.04 3.51
206 209 0.934496 TTTCAAACAGACGCTGACGG 59.066 50.000 12.77 3.12 46.04 4.79
209 212 1.140052 TCCCTTTCAAACAGACGCTGA 59.860 47.619 12.77 0.00 35.18 4.26
211 214 1.884235 CTCCCTTTCAAACAGACGCT 58.116 50.000 0.00 0.00 0.00 5.07
212 215 0.238553 GCTCCCTTTCAAACAGACGC 59.761 55.000 0.00 0.00 0.00 5.19
218 221 2.678336 CCGTATCTGCTCCCTTTCAAAC 59.322 50.000 0.00 0.00 0.00 2.93
223 226 1.867363 ACTCCGTATCTGCTCCCTTT 58.133 50.000 0.00 0.00 0.00 3.11
224 227 2.750141 TACTCCGTATCTGCTCCCTT 57.250 50.000 0.00 0.00 0.00 3.95
233 236 3.833070 ACCATCCTCCATTACTCCGTATC 59.167 47.826 0.00 0.00 0.00 2.24
238 241 1.344763 CCGACCATCCTCCATTACTCC 59.655 57.143 0.00 0.00 0.00 3.85
239 242 2.297597 CTCCGACCATCCTCCATTACTC 59.702 54.545 0.00 0.00 0.00 2.59
245 248 0.684479 CTCACTCCGACCATCCTCCA 60.684 60.000 0.00 0.00 0.00 3.86
252 255 0.037326 GCACATTCTCACTCCGACCA 60.037 55.000 0.00 0.00 0.00 4.02
255 258 1.215382 CCGCACATTCTCACTCCGA 59.785 57.895 0.00 0.00 0.00 4.55
256 259 1.811266 CCCGCACATTCTCACTCCG 60.811 63.158 0.00 0.00 0.00 4.63
281 284 4.074970 ACTCAGACTTAGCCAAAACCATG 58.925 43.478 0.00 0.00 0.00 3.66
294 297 0.318762 GCCTCCGACAACTCAGACTT 59.681 55.000 0.00 0.00 0.00 3.01
300 303 0.824759 ATGTAGGCCTCCGACAACTC 59.175 55.000 9.68 0.00 41.98 3.01
303 306 1.904771 CCATGTAGGCCTCCGACAA 59.095 57.895 9.68 0.00 41.98 3.18
313 316 1.227263 CGGACCTTCGCCATGTAGG 60.227 63.158 0.00 0.00 40.79 3.18
332 335 0.032615 TTGGGAGGTTTGCAGGTGTT 60.033 50.000 0.00 0.00 0.00 3.32
335 338 0.261696 AAGTTGGGAGGTTTGCAGGT 59.738 50.000 0.00 0.00 0.00 4.00
344 347 1.202842 ACCGGTTACAAAGTTGGGAGG 60.203 52.381 0.00 0.00 0.00 4.30
347 350 2.427812 ACAAACCGGTTACAAAGTTGGG 59.572 45.455 22.60 2.97 0.00 4.12
357 360 2.152830 CGAAATCCCACAAACCGGTTA 58.847 47.619 22.60 3.51 0.00 2.85
382 385 1.153369 ATTCACGGATGCGTCTGGG 60.153 57.895 18.91 15.27 35.33 4.45
388 391 1.202065 CCTCAAACATTCACGGATGCG 60.202 52.381 4.58 4.58 0.00 4.73
394 397 2.226200 TGTCATGCCTCAAACATTCACG 59.774 45.455 0.00 0.00 0.00 4.35
434 437 1.683365 CCCCTAAACGTCCCGAGGA 60.683 63.158 6.58 0.00 0.00 3.71
436 439 2.186125 GCCCCTAAACGTCCCGAG 59.814 66.667 0.00 0.00 0.00 4.63
437 440 3.762247 CGCCCCTAAACGTCCCGA 61.762 66.667 0.00 0.00 0.00 5.14
438 441 2.582734 AATCGCCCCTAAACGTCCCG 62.583 60.000 0.00 0.00 0.00 5.14
439 442 0.393402 AAATCGCCCCTAAACGTCCC 60.393 55.000 0.00 0.00 0.00 4.46
440 443 0.730840 CAAATCGCCCCTAAACGTCC 59.269 55.000 0.00 0.00 0.00 4.79
441 444 0.730840 CCAAATCGCCCCTAAACGTC 59.269 55.000 0.00 0.00 0.00 4.34
442 445 0.037160 ACCAAATCGCCCCTAAACGT 59.963 50.000 0.00 0.00 0.00 3.99
443 446 0.450184 CACCAAATCGCCCCTAAACG 59.550 55.000 0.00 0.00 0.00 3.60
444 447 0.815095 CCACCAAATCGCCCCTAAAC 59.185 55.000 0.00 0.00 0.00 2.01
445 448 0.406361 ACCACCAAATCGCCCCTAAA 59.594 50.000 0.00 0.00 0.00 1.85
446 449 0.034863 GACCACCAAATCGCCCCTAA 60.035 55.000 0.00 0.00 0.00 2.69
447 450 1.605453 GACCACCAAATCGCCCCTA 59.395 57.895 0.00 0.00 0.00 3.53
448 451 2.355115 GACCACCAAATCGCCCCT 59.645 61.111 0.00 0.00 0.00 4.79
449 452 3.131478 CGACCACCAAATCGCCCC 61.131 66.667 0.00 0.00 0.00 5.80
450 453 3.131478 CCGACCACCAAATCGCCC 61.131 66.667 0.00 0.00 37.01 6.13
451 454 2.359478 ACCGACCACCAAATCGCC 60.359 61.111 0.00 0.00 37.01 5.54
452 455 1.512156 AACACCGACCACCAAATCGC 61.512 55.000 0.00 0.00 37.01 4.58
453 456 0.237235 CAACACCGACCACCAAATCG 59.763 55.000 0.00 0.00 38.08 3.34
454 457 0.596082 CCAACACCGACCACCAAATC 59.404 55.000 0.00 0.00 0.00 2.17
455 458 0.183971 TCCAACACCGACCACCAAAT 59.816 50.000 0.00 0.00 0.00 2.32
456 459 0.464735 CTCCAACACCGACCACCAAA 60.465 55.000 0.00 0.00 0.00 3.28
457 460 1.147376 CTCCAACACCGACCACCAA 59.853 57.895 0.00 0.00 0.00 3.67
458 461 1.628238 AACTCCAACACCGACCACCA 61.628 55.000 0.00 0.00 0.00 4.17
459 462 1.147600 AACTCCAACACCGACCACC 59.852 57.895 0.00 0.00 0.00 4.61
460 463 1.782028 GCAACTCCAACACCGACCAC 61.782 60.000 0.00 0.00 0.00 4.16
461 464 1.525077 GCAACTCCAACACCGACCA 60.525 57.895 0.00 0.00 0.00 4.02
462 465 1.525077 TGCAACTCCAACACCGACC 60.525 57.895 0.00 0.00 0.00 4.79
463 466 1.647084 GTGCAACTCCAACACCGAC 59.353 57.895 0.00 0.00 0.00 4.79
464 467 4.134623 GTGCAACTCCAACACCGA 57.865 55.556 0.00 0.00 0.00 4.69
481 484 7.233757 AGTTACTCCCATTATGGCTAGTCTAAG 59.766 40.741 17.07 0.00 35.79 2.18
482 485 7.073854 AGTTACTCCCATTATGGCTAGTCTAA 58.926 38.462 17.07 7.89 35.79 2.10
483 486 6.621394 AGTTACTCCCATTATGGCTAGTCTA 58.379 40.000 17.07 7.70 35.79 2.59
484 487 5.468658 AGTTACTCCCATTATGGCTAGTCT 58.531 41.667 17.07 9.36 35.79 3.24
485 488 5.810080 AGTTACTCCCATTATGGCTAGTC 57.190 43.478 17.07 7.70 35.79 2.59
486 489 5.221461 CGAAGTTACTCCCATTATGGCTAGT 60.221 44.000 17.50 17.50 35.79 2.57
487 490 5.230942 CGAAGTTACTCCCATTATGGCTAG 58.769 45.833 5.57 7.90 35.79 3.42
488 491 4.039973 CCGAAGTTACTCCCATTATGGCTA 59.960 45.833 5.57 0.00 35.79 3.93
489 492 3.181454 CCGAAGTTACTCCCATTATGGCT 60.181 47.826 5.57 0.00 35.79 4.75
490 493 3.139077 CCGAAGTTACTCCCATTATGGC 58.861 50.000 5.57 0.00 35.79 4.40
491 494 4.417426 ACCGAAGTTACTCCCATTATGG 57.583 45.455 3.85 3.85 37.25 2.74
492 495 6.158023 ACTACCGAAGTTACTCCCATTATG 57.842 41.667 0.00 0.00 33.35 1.90
493 496 7.342799 TGTTACTACCGAAGTTACTCCCATTAT 59.657 37.037 8.00 0.00 39.80 1.28
494 497 6.663093 TGTTACTACCGAAGTTACTCCCATTA 59.337 38.462 8.00 0.00 39.80 1.90
495 498 5.481473 TGTTACTACCGAAGTTACTCCCATT 59.519 40.000 8.00 0.00 39.80 3.16
496 499 5.018809 TGTTACTACCGAAGTTACTCCCAT 58.981 41.667 8.00 0.00 39.80 4.00
497 500 4.406456 TGTTACTACCGAAGTTACTCCCA 58.594 43.478 8.00 0.00 39.80 4.37
498 501 5.586339 GATGTTACTACCGAAGTTACTCCC 58.414 45.833 8.00 0.00 39.80 4.30
499 502 5.065218 TCGATGTTACTACCGAAGTTACTCC 59.935 44.000 8.00 1.54 39.80 3.85
500 503 6.111768 TCGATGTTACTACCGAAGTTACTC 57.888 41.667 8.00 4.02 39.80 2.59
501 504 5.645497 ACTCGATGTTACTACCGAAGTTACT 59.355 40.000 8.00 0.00 39.80 2.24
502 505 5.873732 ACTCGATGTTACTACCGAAGTTAC 58.126 41.667 0.00 0.00 39.80 2.50
503 506 5.065218 GGACTCGATGTTACTACCGAAGTTA 59.935 44.000 0.00 0.00 39.80 2.24
504 507 4.142513 GGACTCGATGTTACTACCGAAGTT 60.143 45.833 0.00 0.00 39.80 2.66
505 508 3.376546 GGACTCGATGTTACTACCGAAGT 59.623 47.826 0.00 0.00 42.62 3.01
506 509 3.376234 TGGACTCGATGTTACTACCGAAG 59.624 47.826 0.00 0.00 0.00 3.79
507 510 3.346315 TGGACTCGATGTTACTACCGAA 58.654 45.455 0.00 0.00 0.00 4.30
508 511 2.989909 TGGACTCGATGTTACTACCGA 58.010 47.619 0.00 0.00 0.00 4.69
509 512 3.128242 AGTTGGACTCGATGTTACTACCG 59.872 47.826 0.00 0.00 0.00 4.02
510 513 4.670347 GAGTTGGACTCGATGTTACTACC 58.330 47.826 0.00 0.00 35.28 3.18
522 525 5.948992 AGCAAATTTACTGAGTTGGACTC 57.051 39.130 0.00 1.21 45.26 3.36
523 526 7.448469 ACATAAGCAAATTTACTGAGTTGGACT 59.552 33.333 0.00 0.00 0.00 3.85
524 527 7.538678 CACATAAGCAAATTTACTGAGTTGGAC 59.461 37.037 0.00 0.00 0.00 4.02
525 528 7.309133 CCACATAAGCAAATTTACTGAGTTGGA 60.309 37.037 0.00 0.00 0.00 3.53
526 529 6.808212 CCACATAAGCAAATTTACTGAGTTGG 59.192 38.462 0.00 0.00 0.00 3.77
527 530 6.308766 GCCACATAAGCAAATTTACTGAGTTG 59.691 38.462 0.00 0.00 0.00 3.16
528 531 6.015519 TGCCACATAAGCAAATTTACTGAGTT 60.016 34.615 0.00 0.00 37.28 3.01
529 532 5.476599 TGCCACATAAGCAAATTTACTGAGT 59.523 36.000 0.00 0.00 37.28 3.41
530 533 5.953183 TGCCACATAAGCAAATTTACTGAG 58.047 37.500 0.00 0.00 37.28 3.35
531 534 5.973899 TGCCACATAAGCAAATTTACTGA 57.026 34.783 0.00 0.00 37.28 3.41
541 544 5.651576 TCATTAACTCATTGCCACATAAGCA 59.348 36.000 0.00 0.00 38.81 3.91
542 545 6.135290 TCATTAACTCATTGCCACATAAGC 57.865 37.500 0.00 0.00 0.00 3.09
543 546 6.543465 TCCTCATTAACTCATTGCCACATAAG 59.457 38.462 0.00 0.00 0.00 1.73
544 547 6.422333 TCCTCATTAACTCATTGCCACATAA 58.578 36.000 0.00 0.00 0.00 1.90
545 548 6.000246 TCCTCATTAACTCATTGCCACATA 58.000 37.500 0.00 0.00 0.00 2.29
546 549 4.858850 TCCTCATTAACTCATTGCCACAT 58.141 39.130 0.00 0.00 0.00 3.21
547 550 4.019411 TCTCCTCATTAACTCATTGCCACA 60.019 41.667 0.00 0.00 0.00 4.17
548 551 4.517285 TCTCCTCATTAACTCATTGCCAC 58.483 43.478 0.00 0.00 0.00 5.01
549 552 4.471025 TCTCTCCTCATTAACTCATTGCCA 59.529 41.667 0.00 0.00 0.00 4.92
550 553 5.028549 TCTCTCCTCATTAACTCATTGCC 57.971 43.478 0.00 0.00 0.00 4.52
551 554 6.054295 ACATCTCTCCTCATTAACTCATTGC 58.946 40.000 0.00 0.00 0.00 3.56
552 555 8.420222 ACTACATCTCTCCTCATTAACTCATTG 58.580 37.037 0.00 0.00 0.00 2.82
553 556 8.546083 ACTACATCTCTCCTCATTAACTCATT 57.454 34.615 0.00 0.00 0.00 2.57
554 557 9.073475 GTACTACATCTCTCCTCATTAACTCAT 57.927 37.037 0.00 0.00 0.00 2.90
555 558 8.275758 AGTACTACATCTCTCCTCATTAACTCA 58.724 37.037 0.00 0.00 0.00 3.41
556 559 8.685838 AGTACTACATCTCTCCTCATTAACTC 57.314 38.462 0.00 0.00 0.00 3.01
557 560 9.787435 CTAGTACTACATCTCTCCTCATTAACT 57.213 37.037 0.00 0.00 0.00 2.24
558 561 9.563748 ACTAGTACTACATCTCTCCTCATTAAC 57.436 37.037 0.00 0.00 0.00 2.01
561 564 9.563748 GTTACTAGTACTACATCTCTCCTCATT 57.436 37.037 0.91 0.00 0.00 2.57
562 565 8.940982 AGTTACTAGTACTACATCTCTCCTCAT 58.059 37.037 0.91 0.00 0.00 2.90
563 566 8.321621 AGTTACTAGTACTACATCTCTCCTCA 57.678 38.462 0.91 0.00 0.00 3.86
566 569 8.992073 GCTAAGTTACTAGTACTACATCTCTCC 58.008 40.741 0.91 0.00 0.00 3.71
567 570 9.768662 AGCTAAGTTACTAGTACTACATCTCTC 57.231 37.037 0.91 0.00 0.00 3.20
586 589 8.118976 TGTGATGTTACAGTAACTAGCTAAGT 57.881 34.615 21.56 0.00 41.49 2.24
587 590 9.025020 CATGTGATGTTACAGTAACTAGCTAAG 57.975 37.037 21.56 6.36 39.38 2.18
588 591 8.528643 ACATGTGATGTTACAGTAACTAGCTAA 58.471 33.333 21.56 3.59 41.63 3.09
589 592 8.063200 ACATGTGATGTTACAGTAACTAGCTA 57.937 34.615 21.56 4.25 41.63 3.32
590 593 6.936279 ACATGTGATGTTACAGTAACTAGCT 58.064 36.000 21.56 6.57 41.63 3.32
591 594 6.255887 GGACATGTGATGTTACAGTAACTAGC 59.744 42.308 21.56 12.59 45.03 3.42
592 595 6.757010 GGGACATGTGATGTTACAGTAACTAG 59.243 42.308 21.56 8.25 45.03 2.57
593 596 6.211785 TGGGACATGTGATGTTACAGTAACTA 59.788 38.462 21.56 10.50 45.03 2.24
594 597 5.012664 TGGGACATGTGATGTTACAGTAACT 59.987 40.000 21.56 9.41 45.03 2.24
595 598 5.242434 TGGGACATGTGATGTTACAGTAAC 58.758 41.667 15.58 15.58 45.03 2.50
596 599 5.491323 TGGGACATGTGATGTTACAGTAA 57.509 39.130 1.15 0.00 45.03 2.24
597 600 5.491323 TTGGGACATGTGATGTTACAGTA 57.509 39.130 1.15 0.00 45.03 2.74
598 601 4.365514 TTGGGACATGTGATGTTACAGT 57.634 40.909 1.15 0.00 45.03 3.55
599 602 4.439153 GCATTGGGACATGTGATGTTACAG 60.439 45.833 1.15 0.00 45.03 2.74
600 603 3.443329 GCATTGGGACATGTGATGTTACA 59.557 43.478 1.15 0.00 45.03 2.41
601 604 3.443329 TGCATTGGGACATGTGATGTTAC 59.557 43.478 1.15 0.00 45.03 2.50
602 605 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
603 606 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
605 608 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
606 609 6.779049 ACTTATATTGCATTGGGACATGTGAT 59.221 34.615 1.15 0.00 39.30 3.06
607 610 6.128486 ACTTATATTGCATTGGGACATGTGA 58.872 36.000 1.15 0.00 39.30 3.58
608 611 6.263842 AGACTTATATTGCATTGGGACATGTG 59.736 38.462 1.15 0.00 39.30 3.21
609 612 6.367983 AGACTTATATTGCATTGGGACATGT 58.632 36.000 0.00 0.00 39.30 3.21
610 613 6.889301 AGACTTATATTGCATTGGGACATG 57.111 37.500 0.00 0.00 39.30 3.21
612 615 9.502091 GTTATAGACTTATATTGCATTGGGACA 57.498 33.333 0.00 0.00 0.00 4.02
613 616 8.947115 GGTTATAGACTTATATTGCATTGGGAC 58.053 37.037 0.00 0.00 0.00 4.46
614 617 8.890472 AGGTTATAGACTTATATTGCATTGGGA 58.110 33.333 0.00 0.00 0.00 4.37
634 637 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
635 638 8.748412 ACATGCAAAGCTTCATTTATTAGGTTA 58.252 29.630 0.00 0.00 0.00 2.85
636 639 7.614494 ACATGCAAAGCTTCATTTATTAGGTT 58.386 30.769 0.00 0.00 0.00 3.50
637 640 7.174107 ACATGCAAAGCTTCATTTATTAGGT 57.826 32.000 0.00 0.00 0.00 3.08
638 641 9.023967 GTAACATGCAAAGCTTCATTTATTAGG 57.976 33.333 0.00 0.00 0.00 2.69
639 642 9.023967 GGTAACATGCAAAGCTTCATTTATTAG 57.976 33.333 0.00 0.00 0.00 1.73
640 643 8.526978 TGGTAACATGCAAAGCTTCATTTATTA 58.473 29.630 0.00 0.00 46.17 0.98
641 644 7.385267 TGGTAACATGCAAAGCTTCATTTATT 58.615 30.769 0.00 0.00 46.17 1.40
642 645 6.934056 TGGTAACATGCAAAGCTTCATTTAT 58.066 32.000 0.00 0.00 46.17 1.40
643 646 6.338214 TGGTAACATGCAAAGCTTCATTTA 57.662 33.333 0.00 0.18 46.17 1.40
644 647 5.212532 TGGTAACATGCAAAGCTTCATTT 57.787 34.783 0.00 1.04 46.17 2.32
645 648 4.870123 TGGTAACATGCAAAGCTTCATT 57.130 36.364 0.00 0.00 46.17 2.57
660 663 8.699130 AGTGGGTAGTAATATAAGTGTGGTAAC 58.301 37.037 0.00 0.00 0.00 2.50
661 664 8.843308 AGTGGGTAGTAATATAAGTGTGGTAA 57.157 34.615 0.00 0.00 0.00 2.85
663 666 8.867097 CATAGTGGGTAGTAATATAAGTGTGGT 58.133 37.037 0.00 0.00 0.00 4.16
664 667 9.085645 TCATAGTGGGTAGTAATATAAGTGTGG 57.914 37.037 0.00 0.00 0.00 4.17
668 671 9.893975 ACCTTCATAGTGGGTAGTAATATAAGT 57.106 33.333 0.00 0.00 0.00 2.24
679 682 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
680 683 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
681 684 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
682 685 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
684 687 9.796180 CCTAGTCTATGTTACTACCTTCATAGT 57.204 37.037 0.00 0.00 40.01 2.12
685 688 9.233649 CCCTAGTCTATGTTACTACCTTCATAG 57.766 40.741 0.00 0.00 40.26 2.23
686 689 8.952602 TCCCTAGTCTATGTTACTACCTTCATA 58.047 37.037 0.00 0.00 0.00 2.15
687 690 7.823635 TCCCTAGTCTATGTTACTACCTTCAT 58.176 38.462 0.00 0.00 0.00 2.57
688 691 7.217028 TCCCTAGTCTATGTTACTACCTTCA 57.783 40.000 0.00 0.00 0.00 3.02
689 692 9.978336 ATATCCCTAGTCTATGTTACTACCTTC 57.022 37.037 0.00 0.00 0.00 3.46
690 693 9.756571 CATATCCCTAGTCTATGTTACTACCTT 57.243 37.037 0.00 0.00 0.00 3.50
691 694 8.902881 ACATATCCCTAGTCTATGTTACTACCT 58.097 37.037 4.21 0.00 33.42 3.08
692 695 8.958506 CACATATCCCTAGTCTATGTTACTACC 58.041 40.741 6.43 0.00 34.66 3.18
693 696 9.517868 ACACATATCCCTAGTCTATGTTACTAC 57.482 37.037 6.43 0.00 34.66 2.73
698 701 8.958060 ACATACACATATCCCTAGTCTATGTT 57.042 34.615 6.43 3.44 34.66 2.71
699 702 8.958060 AACATACACATATCCCTAGTCTATGT 57.042 34.615 4.21 4.21 36.72 2.29
703 706 9.742144 CTAGTAACATACACATATCCCTAGTCT 57.258 37.037 0.00 0.00 0.00 3.24
704 707 9.517868 ACTAGTAACATACACATATCCCTAGTC 57.482 37.037 0.00 0.00 28.68 2.59
705 708 9.298250 CACTAGTAACATACACATATCCCTAGT 57.702 37.037 0.00 0.00 33.56 2.57
706 709 9.298250 ACACTAGTAACATACACATATCCCTAG 57.702 37.037 0.00 0.00 0.00 3.02
708 711 9.824216 ATACACTAGTAACATACACATATCCCT 57.176 33.333 0.00 0.00 33.13 4.20
709 712 9.856488 CATACACTAGTAACATACACATATCCC 57.144 37.037 0.00 0.00 33.13 3.85
719 722 9.910267 TGGAGAGTAACATACACTAGTAACATA 57.090 33.333 0.00 0.00 33.13 2.29
720 723 8.818622 TGGAGAGTAACATACACTAGTAACAT 57.181 34.615 0.00 0.00 33.13 2.71
721 724 8.818622 ATGGAGAGTAACATACACTAGTAACA 57.181 34.615 0.00 0.00 33.13 2.41
722 725 9.517609 CAATGGAGAGTAACATACACTAGTAAC 57.482 37.037 0.00 0.00 33.13 2.50
723 726 9.251440 ACAATGGAGAGTAACATACACTAGTAA 57.749 33.333 0.00 0.00 33.13 2.24
724 727 8.683615 CACAATGGAGAGTAACATACACTAGTA 58.316 37.037 0.00 0.00 29.62 1.82
725 728 7.363880 CCACAATGGAGAGTAACATACACTAGT 60.364 40.741 0.00 0.00 40.96 2.57
726 729 6.980978 CCACAATGGAGAGTAACATACACTAG 59.019 42.308 0.00 0.00 40.96 2.57
727 730 6.629515 GCCACAATGGAGAGTAACATACACTA 60.630 42.308 0.00 0.00 40.96 2.74
728 731 5.734720 CCACAATGGAGAGTAACATACACT 58.265 41.667 0.00 0.00 40.96 3.55
729 732 4.332819 GCCACAATGGAGAGTAACATACAC 59.667 45.833 0.00 0.00 40.96 2.90
730 733 4.225042 AGCCACAATGGAGAGTAACATACA 59.775 41.667 0.00 0.00 40.96 2.29
731 734 4.770795 AGCCACAATGGAGAGTAACATAC 58.229 43.478 0.00 0.00 40.96 2.39
732 735 5.661312 ACTAGCCACAATGGAGAGTAACATA 59.339 40.000 0.00 0.00 40.96 2.29
733 736 4.471386 ACTAGCCACAATGGAGAGTAACAT 59.529 41.667 0.00 0.00 40.96 2.71
734 737 3.838317 ACTAGCCACAATGGAGAGTAACA 59.162 43.478 0.00 0.00 40.96 2.41
735 738 4.160626 AGACTAGCCACAATGGAGAGTAAC 59.839 45.833 0.00 0.00 40.96 2.50
736 739 4.353777 AGACTAGCCACAATGGAGAGTAA 58.646 43.478 0.00 0.00 40.96 2.24
737 740 3.982516 AGACTAGCCACAATGGAGAGTA 58.017 45.455 0.00 0.00 40.96 2.59
738 741 2.826488 AGACTAGCCACAATGGAGAGT 58.174 47.619 0.00 0.46 40.96 3.24
739 742 3.902881 AAGACTAGCCACAATGGAGAG 57.097 47.619 0.00 0.00 40.96 3.20
740 743 4.610333 TCTAAGACTAGCCACAATGGAGA 58.390 43.478 0.00 0.00 40.96 3.71
741 744 5.344743 TTCTAAGACTAGCCACAATGGAG 57.655 43.478 0.00 0.00 40.96 3.86
742 745 5.957771 ATTCTAAGACTAGCCACAATGGA 57.042 39.130 0.00 0.00 40.96 3.41
743 746 6.115446 TCAATTCTAAGACTAGCCACAATGG 58.885 40.000 0.00 0.00 41.55 3.16
744 747 6.238320 GCTCAATTCTAAGACTAGCCACAATG 60.238 42.308 0.00 0.00 0.00 2.82
745 748 5.819901 GCTCAATTCTAAGACTAGCCACAAT 59.180 40.000 0.00 0.00 0.00 2.71
746 749 5.178797 GCTCAATTCTAAGACTAGCCACAA 58.821 41.667 0.00 0.00 0.00 3.33
747 750 4.383118 GGCTCAATTCTAAGACTAGCCACA 60.383 45.833 5.61 0.00 45.81 4.17
748 751 4.123506 GGCTCAATTCTAAGACTAGCCAC 58.876 47.826 5.61 0.00 45.81 5.01
749 752 4.408182 GGCTCAATTCTAAGACTAGCCA 57.592 45.455 5.61 0.00 45.81 4.75
750 753 4.123506 GTGGCTCAATTCTAAGACTAGCC 58.876 47.826 0.00 0.00 46.52 3.93
751 754 3.799420 CGTGGCTCAATTCTAAGACTAGC 59.201 47.826 0.00 0.00 0.00 3.42
752 755 5.000012 ACGTGGCTCAATTCTAAGACTAG 58.000 43.478 0.00 0.00 0.00 2.57
753 756 4.461431 TGACGTGGCTCAATTCTAAGACTA 59.539 41.667 0.00 0.00 0.00 2.59
754 757 3.258372 TGACGTGGCTCAATTCTAAGACT 59.742 43.478 0.00 0.00 0.00 3.24
755 758 3.585862 TGACGTGGCTCAATTCTAAGAC 58.414 45.455 0.00 0.00 0.00 3.01
756 759 3.953712 TGACGTGGCTCAATTCTAAGA 57.046 42.857 0.00 0.00 0.00 2.10
790 793 1.068741 GAGTGGTCTGGAACGAGTTGT 59.931 52.381 0.00 0.00 0.00 3.32
821 824 5.878116 GGACACATTTATAGGTTGCTGTACA 59.122 40.000 0.00 0.00 0.00 2.90
823 826 5.113383 CGGACACATTTATAGGTTGCTGTA 58.887 41.667 0.00 0.00 0.00 2.74
1035 1042 1.065251 GAGATACGACGGTGGAGGAAC 59.935 57.143 0.00 0.00 0.00 3.62
1047 1054 1.810794 GCTGGAGACGAGGAGATACGA 60.811 57.143 0.00 0.00 0.00 3.43
1062 1069 1.454847 GGTGGTGGTTGTTGCTGGA 60.455 57.895 0.00 0.00 0.00 3.86
1099 1112 2.975799 GTTGCGGGCGTGGAAGAA 60.976 61.111 0.00 0.00 0.00 2.52
1314 1327 3.706373 GCTGGGGAGCGGTTCTCA 61.706 66.667 0.00 0.00 43.70 3.27
1408 1421 4.657039 AGTGGGGTAGAGAGACTAGACTAG 59.343 50.000 8.00 8.00 0.00 2.57
1409 1422 4.633351 AGTGGGGTAGAGAGACTAGACTA 58.367 47.826 0.00 0.00 0.00 2.59
1410 1423 3.466836 AGTGGGGTAGAGAGACTAGACT 58.533 50.000 0.00 0.00 0.00 3.24
1422 1435 3.695830 TGAGCAACTTTAGTGGGGTAG 57.304 47.619 0.00 0.00 0.00 3.18
1428 1441 6.369890 AGTCACACATATGAGCAACTTTAGTG 59.630 38.462 10.38 0.00 0.00 2.74
1430 1443 6.815641 AGAGTCACACATATGAGCAACTTTAG 59.184 38.462 10.38 0.00 0.00 1.85
1431 1444 6.701340 AGAGTCACACATATGAGCAACTTTA 58.299 36.000 10.38 0.00 0.00 1.85
1432 1445 5.555017 AGAGTCACACATATGAGCAACTTT 58.445 37.500 10.38 1.67 0.00 2.66
1433 1446 5.157940 AGAGTCACACATATGAGCAACTT 57.842 39.130 10.38 0.00 0.00 2.66
1434 1447 4.815533 AGAGTCACACATATGAGCAACT 57.184 40.909 10.38 8.57 0.00 3.16
1435 1448 5.869753 AAAGAGTCACACATATGAGCAAC 57.130 39.130 10.38 3.70 0.00 4.17
1436 1449 5.181811 CCAAAAGAGTCACACATATGAGCAA 59.818 40.000 10.38 0.00 0.00 3.91
1437 1450 4.696877 CCAAAAGAGTCACACATATGAGCA 59.303 41.667 10.38 0.00 0.00 4.26
1438 1451 4.937620 TCCAAAAGAGTCACACATATGAGC 59.062 41.667 10.38 0.00 0.00 4.26
1444 1457 4.170468 ACCTTCCAAAAGAGTCACACAT 57.830 40.909 0.00 0.00 34.14 3.21
1470 1485 2.196749 CTGACTGTGTGAGTGTGTGAC 58.803 52.381 0.00 0.00 33.83 3.67
1471 1486 1.824852 ACTGACTGTGTGAGTGTGTGA 59.175 47.619 0.00 0.00 33.83 3.58
1472 1487 2.299993 ACTGACTGTGTGAGTGTGTG 57.700 50.000 0.00 0.00 33.83 3.82
1473 1488 3.334583 AAACTGACTGTGTGAGTGTGT 57.665 42.857 0.00 0.00 33.83 3.72
1474 1489 4.154015 TGAAAAACTGACTGTGTGAGTGTG 59.846 41.667 0.00 0.00 33.83 3.82
1475 1490 4.323417 TGAAAAACTGACTGTGTGAGTGT 58.677 39.130 0.00 0.00 33.83 3.55
1476 1491 4.944962 TGAAAAACTGACTGTGTGAGTG 57.055 40.909 0.00 0.00 33.83 3.51
1477 1492 5.473504 ACTTTGAAAAACTGACTGTGTGAGT 59.526 36.000 0.00 0.00 37.76 3.41
1540 1555 7.727578 TTAGTATGTATCTTGTCCAAGTGGA 57.272 36.000 6.90 0.00 43.08 4.02
1541 1556 8.830580 CATTTAGTATGTATCTTGTCCAAGTGG 58.169 37.037 6.90 0.00 39.38 4.00
1579 1594 9.314133 TGTACTGATATAGAATAGAAGCCATGT 57.686 33.333 0.00 0.00 0.00 3.21
1628 1646 0.602106 CTCTGTGTGTGCAGGGTCAG 60.602 60.000 0.00 0.00 37.12 3.51
1644 1662 4.774726 TGTCCTTCAGCTTAATCAGTCTCT 59.225 41.667 0.00 0.00 0.00 3.10
1722 1744 4.514066 ACACTCCGAGGAAATACACAAAAC 59.486 41.667 0.00 0.00 0.00 2.43
1733 1755 4.204012 ACAAAATTTCACACTCCGAGGAA 58.796 39.130 0.00 0.00 0.00 3.36
1816 1839 2.159043 ACACACCTGCCGATCAGAATAG 60.159 50.000 6.27 0.00 45.72 1.73
1958 1984 6.094193 TCATCTCAGCGTTCATATTCAGAT 57.906 37.500 0.00 0.00 0.00 2.90
2004 2030 6.528537 AACAGAAATACAATATGCCTTGCA 57.471 33.333 0.00 0.00 44.86 4.08
2151 2178 9.814899 AAAACTGTCAATGACATGTAATTCAAA 57.185 25.926 17.10 0.00 41.94 2.69
2240 2267 6.350110 CCTGTTACACAAATTGATACAAGGGG 60.350 42.308 0.00 0.00 0.00 4.79
2392 2423 7.829706 ACTGGAAAGAAGAAACTAGAAAACTGT 59.170 33.333 0.00 0.00 0.00 3.55
2429 2464 1.093159 CCCAAAGCATGTCTCAGAGC 58.907 55.000 0.00 0.00 0.00 4.09
2617 2655 9.618890 ACAGCACAATATATACAGTTCAGAAAT 57.381 29.630 0.00 0.00 0.00 2.17
2767 2807 1.315981 TGGTGCACCAACAAGCGAAA 61.316 50.000 36.10 8.77 44.35 3.46
2800 2840 5.762218 AGCTTGCAGTATAAGAAATAGCAGG 59.238 40.000 0.00 0.00 0.00 4.85
3423 3466 2.053747 AACCCCCTACACCTTCATCA 57.946 50.000 0.00 0.00 0.00 3.07
3438 3481 2.979814 AAGCAGTGAAACCAAAACCC 57.020 45.000 0.00 0.00 37.80 4.11
3692 3735 7.275560 GGGCAAACATAATGTTCACTTACAATC 59.724 37.037 0.00 0.00 40.14 2.67
3768 3811 2.841266 TGGGGTTTATGGACGATCAGAA 59.159 45.455 0.00 0.00 0.00 3.02
3824 3912 3.228453 ACCGATTATAAGAGAAGCCCGA 58.772 45.455 0.00 0.00 0.00 5.14
3861 4112 1.182667 GAACCCCAACCAGGTAATGC 58.817 55.000 0.00 0.00 36.27 3.56
3904 4155 8.141268 TGGTTTCCTTAACATCAATTTTCTCAC 58.859 33.333 0.00 0.00 38.55 3.51
3945 4197 5.446143 TTGTTGTTTCCCATGTCATACAC 57.554 39.130 0.00 0.00 0.00 2.90
4036 4288 4.044308 TCCCCATAGTATCTGGCTTTCAA 58.956 43.478 0.00 0.00 32.08 2.69
4435 4691 1.412710 TCATCTGAGATACGGCCAACC 59.587 52.381 2.24 0.00 0.00 3.77
4436 4692 2.362397 TCTCATCTGAGATACGGCCAAC 59.638 50.000 2.24 0.00 45.48 3.77
4568 4824 3.064207 TCGATCCGGAAAGAAGTGTTTG 58.936 45.455 9.01 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.