Multiple sequence alignment - TraesCS4B01G088300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G088300 chr4B 100.000 3188 0 0 1 3188 89302125 89305312 0.000000e+00 5888.0
1 TraesCS4B01G088300 chr4B 96.875 32 1 0 2477 2508 161553249 161553218 2.000000e-03 54.7
2 TraesCS4B01G088300 chr4B 96.875 32 1 0 2478 2509 656162614 656162645 2.000000e-03 54.7
3 TraesCS4B01G088300 chr4D 96.864 2870 67 7 1 2868 60132204 60135052 0.000000e+00 4780.0
4 TraesCS4B01G088300 chr4D 95.556 180 8 0 2851 3030 60135195 60135374 4.020000e-74 289.0
5 TraesCS4B01G088300 chr4D 93.043 115 8 0 3074 3188 60135371 60135485 5.470000e-38 169.0
6 TraesCS4B01G088300 chr4A 96.700 2394 60 8 1 2389 536199622 536197243 0.000000e+00 3965.0
7 TraesCS4B01G088300 chr7D 97.059 34 1 0 2478 2511 103820625 103820592 1.240000e-04 58.4
8 TraesCS4B01G088300 chr5D 100.000 31 0 0 2478 2508 421173809 421173839 1.240000e-04 58.4
9 TraesCS4B01G088300 chr6D 100.000 30 0 0 2479 2508 342467204 342467233 4.440000e-04 56.5
10 TraesCS4B01G088300 chr6D 100.000 29 0 0 2477 2505 95294899 95294927 2.000000e-03 54.7
11 TraesCS4B01G088300 chr5B 96.875 32 1 0 2479 2510 564992408 564992377 2.000000e-03 54.7
12 TraesCS4B01G088300 chr5A 96.875 32 1 0 2479 2510 326659580 326659549 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G088300 chr4B 89302125 89305312 3187 False 5888 5888 100.000000 1 3188 1 chr4B.!!$F1 3187
1 TraesCS4B01G088300 chr4D 60132204 60135485 3281 False 1746 4780 95.154333 1 3188 3 chr4D.!!$F1 3187
2 TraesCS4B01G088300 chr4A 536197243 536199622 2379 True 3965 3965 96.700000 1 2389 1 chr4A.!!$R1 2388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 983 2.711009 TCTCTCTCATCTCCTCCTCCTC 59.289 54.545 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2380 2392 0.035458 AGGAGGCGACCAAAGAACAG 59.965 55.0 6.55 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 8.833231 TTCTCTCTATTGAAAACATCTTTCGT 57.167 30.769 0.00 0.00 0.00 3.85
303 305 4.340617 TGTAAAGCCCCCACTAATTTCTG 58.659 43.478 0.00 0.00 0.00 3.02
476 478 4.416179 TCCCCTTTAGTTAGTCCCAAAACA 59.584 41.667 0.00 0.00 0.00 2.83
677 684 7.957002 TCCGAATATAATTTCTTGCTCTCTCT 58.043 34.615 0.00 0.00 0.00 3.10
678 685 8.085296 TCCGAATATAATTTCTTGCTCTCTCTC 58.915 37.037 0.00 0.00 0.00 3.20
679 686 8.087750 CCGAATATAATTTCTTGCTCTCTCTCT 58.912 37.037 0.00 0.00 0.00 3.10
680 687 9.474920 CGAATATAATTTCTTGCTCTCTCTCTT 57.525 33.333 0.00 0.00 0.00 2.85
684 691 8.947055 ATAATTTCTTGCTCTCTCTCTTTCTC 57.053 34.615 0.00 0.00 0.00 2.87
685 692 6.610075 ATTTCTTGCTCTCTCTCTTTCTCT 57.390 37.500 0.00 0.00 0.00 3.10
686 693 5.643379 TTCTTGCTCTCTCTCTTTCTCTC 57.357 43.478 0.00 0.00 0.00 3.20
687 694 4.016444 TCTTGCTCTCTCTCTTTCTCTCC 58.984 47.826 0.00 0.00 0.00 3.71
688 695 2.733956 TGCTCTCTCTCTTTCTCTCCC 58.266 52.381 0.00 0.00 0.00 4.30
878 887 3.748645 AGCTCCCTTTCTCTCTCTACA 57.251 47.619 0.00 0.00 0.00 2.74
969 981 3.424703 CATCTCTCTCATCTCCTCCTCC 58.575 54.545 0.00 0.00 0.00 4.30
970 982 2.787956 TCTCTCTCATCTCCTCCTCCT 58.212 52.381 0.00 0.00 0.00 3.69
971 983 2.711009 TCTCTCTCATCTCCTCCTCCTC 59.289 54.545 0.00 0.00 0.00 3.71
1014 1026 6.017605 GCATATAAGACATGAAGGTGTTCAGG 60.018 42.308 0.00 0.00 45.96 3.86
1050 1062 1.134670 GCACTAGGGTCACTCATGGAC 60.135 57.143 0.00 0.00 34.52 4.02
1055 1067 3.876300 GTCACTCATGGACCACGC 58.124 61.111 0.00 0.00 0.00 5.34
1605 1617 4.980805 GACGACAAGCCGCACCCA 62.981 66.667 0.00 0.00 0.00 4.51
1607 1619 4.988598 CGACAAGCCGCACCCAGT 62.989 66.667 0.00 0.00 0.00 4.00
1622 1634 0.392729 CCAGTCTCCTCCTACGACGT 60.393 60.000 5.52 5.52 33.10 4.34
1654 1666 2.164026 GCGCTCCTCTTCAAGCTCG 61.164 63.158 0.00 0.00 36.35 5.03
1860 1872 1.349026 CTCAGGGTTTCAGCTCAGGAA 59.651 52.381 0.00 0.00 0.00 3.36
1899 1911 1.588597 TCAGACGCCTGAGCTGAAG 59.411 57.895 0.00 0.00 44.01 3.02
1996 2008 1.078214 CAGGCCTCGGCAATTGAGA 60.078 57.895 10.34 6.75 44.11 3.27
2006 2018 0.666913 GCAATTGAGATCATGCCGCT 59.333 50.000 10.34 0.00 32.73 5.52
2198 2210 3.540751 CAGCTAGCCGGCCTGCTA 61.541 66.667 33.56 25.22 42.75 3.49
2203 2215 1.903890 TAGCCGGCCTGCTAGCTAG 60.904 63.158 26.15 16.84 42.75 3.42
2204 2216 2.642183 TAGCCGGCCTGCTAGCTAGT 62.642 60.000 26.15 1.43 42.75 2.57
2205 2217 2.201022 GCCGGCCTGCTAGCTAGTA 61.201 63.158 18.11 16.60 0.00 1.82
2206 2218 1.660917 CCGGCCTGCTAGCTAGTAC 59.339 63.158 21.62 7.00 0.00 2.73
2343 2355 3.144657 TCATTCAGCTGGCAAGAAAGA 57.855 42.857 15.13 0.00 0.00 2.52
2380 2392 9.581099 TTTTCACTTATTTCTGTTGTTTCCTTC 57.419 29.630 0.00 0.00 0.00 3.46
2393 2405 3.625764 TGTTTCCTTCTGTTCTTTGGTCG 59.374 43.478 0.00 0.00 0.00 4.79
2418 2430 2.540101 CCTTTGTTGCGGTCTCGATATC 59.460 50.000 0.00 0.00 39.00 1.63
2426 2438 2.505405 CGGTCTCGATATCTCCTTCCA 58.495 52.381 0.34 0.00 39.00 3.53
2466 2478 6.040278 TGTTCTTTGCCATCATGTTTGAACTA 59.960 34.615 0.00 0.00 34.96 2.24
2468 2480 4.782019 TTGCCATCATGTTTGAACTACC 57.218 40.909 0.00 0.00 34.96 3.18
2549 2561 5.872617 TGTAACTTGGATGGATAGTGTTTCG 59.127 40.000 0.00 0.00 0.00 3.46
2553 2565 2.027653 TGGATGGATAGTGTTTCGTGCA 60.028 45.455 0.00 0.00 0.00 4.57
2620 2632 4.388499 AGCGTGGTACTTGCCGGG 62.388 66.667 2.18 0.00 0.00 5.73
2649 2661 3.834799 CGGGGGTGCTCGTCTACC 61.835 72.222 0.00 0.00 36.21 3.18
2671 2683 4.892965 GGGTGTGGTGGTGCTGCA 62.893 66.667 0.00 0.00 0.00 4.41
2718 2731 1.078497 GCGGATGTGTGGTGGATCA 60.078 57.895 0.00 0.00 0.00 2.92
2826 2839 0.534203 CCTACGGCACAACACACCTT 60.534 55.000 0.00 0.00 0.00 3.50
2827 2840 0.865769 CTACGGCACAACACACCTTC 59.134 55.000 0.00 0.00 0.00 3.46
2832 2845 1.436195 GCACAACACACCTTCAGCGA 61.436 55.000 0.00 0.00 0.00 4.93
2834 2847 1.151777 ACAACACACCTTCAGCGACG 61.152 55.000 0.00 0.00 0.00 5.12
2845 2858 2.507102 AGCGACGCGAATGACAGG 60.507 61.111 15.93 0.00 0.00 4.00
2948 3121 0.590195 GCACAGAGAGCCACAAACAG 59.410 55.000 0.00 0.00 0.00 3.16
2950 3123 0.181114 ACAGAGAGCCACAAACAGCA 59.819 50.000 0.00 0.00 0.00 4.41
2979 3152 1.832608 TCGGGGATGGTGGAGATCG 60.833 63.158 0.00 0.00 0.00 3.69
2982 3155 2.029666 GGATGGTGGAGATCGCGG 59.970 66.667 6.13 0.00 0.00 6.46
3008 3181 2.840651 GAGGATGAGGGAGTTTGAAGGA 59.159 50.000 0.00 0.00 0.00 3.36
3012 3185 1.004745 TGAGGGAGTTTGAAGGATGGC 59.995 52.381 0.00 0.00 0.00 4.40
3037 3210 3.282157 CAAGCGTGCACACCTGCT 61.282 61.111 18.64 14.30 44.57 4.24
3038 3211 2.974698 AAGCGTGCACACCTGCTC 60.975 61.111 18.64 0.00 44.57 4.26
3042 3215 2.340078 GTGCACACCTGCTCGAGA 59.660 61.111 18.75 0.02 44.57 4.04
3043 3216 1.079543 GTGCACACCTGCTCGAGAT 60.080 57.895 18.75 0.00 44.57 2.75
3044 3217 1.080995 GTGCACACCTGCTCGAGATC 61.081 60.000 18.75 0.00 44.57 2.75
3045 3218 1.875813 GCACACCTGCTCGAGATCG 60.876 63.158 18.75 3.94 40.63 3.69
3046 3219 1.226802 CACACCTGCTCGAGATCGG 60.227 63.158 18.75 14.58 40.29 4.18
3047 3220 2.415010 CACCTGCTCGAGATCGGG 59.585 66.667 18.75 16.14 44.00 5.14
3048 3221 2.043852 ACCTGCTCGAGATCGGGT 60.044 61.111 18.75 16.84 42.89 5.28
3049 3222 2.122167 ACCTGCTCGAGATCGGGTC 61.122 63.158 18.75 0.00 42.89 4.46
3050 3223 2.121538 CCTGCTCGAGATCGGGTCA 61.122 63.158 18.75 1.15 42.89 4.02
3051 3224 1.459455 CCTGCTCGAGATCGGGTCAT 61.459 60.000 18.75 0.00 42.89 3.06
3052 3225 0.318529 CTGCTCGAGATCGGGTCATG 60.319 60.000 18.75 0.00 42.89 3.07
3053 3226 1.006805 GCTCGAGATCGGGTCATGG 60.007 63.158 18.75 0.00 42.89 3.66
3054 3227 1.739338 GCTCGAGATCGGGTCATGGT 61.739 60.000 18.75 0.00 42.89 3.55
3055 3228 0.747255 CTCGAGATCGGGTCATGGTT 59.253 55.000 6.58 0.00 40.29 3.67
3056 3229 0.744874 TCGAGATCGGGTCATGGTTC 59.255 55.000 1.91 0.00 40.29 3.62
3057 3230 0.459899 CGAGATCGGGTCATGGTTCA 59.540 55.000 0.00 0.00 35.37 3.18
3058 3231 1.134818 CGAGATCGGGTCATGGTTCAA 60.135 52.381 0.00 0.00 35.37 2.69
3059 3232 2.483714 CGAGATCGGGTCATGGTTCAAT 60.484 50.000 0.00 0.00 35.37 2.57
3060 3233 3.243737 CGAGATCGGGTCATGGTTCAATA 60.244 47.826 0.00 0.00 35.37 1.90
3061 3234 4.058817 GAGATCGGGTCATGGTTCAATAC 58.941 47.826 0.00 0.00 0.00 1.89
3072 3245 3.350219 GGTTCAATACCAAGCAGGAGA 57.650 47.619 1.83 0.00 46.92 3.71
3073 3246 3.891049 GGTTCAATACCAAGCAGGAGAT 58.109 45.455 1.83 0.00 46.92 2.75
3074 3247 3.629398 GGTTCAATACCAAGCAGGAGATG 59.371 47.826 1.83 0.00 46.92 2.90
3086 3259 0.693430 AGGAGATGCAGATGGAGGCA 60.693 55.000 0.00 0.00 45.23 4.75
3088 3261 0.179702 GAGATGCAGATGGAGGCACA 59.820 55.000 0.00 0.00 43.75 4.57
3090 3263 0.179702 GATGCAGATGGAGGCACAGA 59.820 55.000 0.00 0.00 43.75 3.41
3104 3277 1.079819 ACAGACGGTGCTGGATTCG 60.080 57.895 10.76 0.00 40.20 3.34
3120 3293 2.065993 TTCGCTGACGGAGAAAGAAG 57.934 50.000 0.00 0.00 40.63 2.85
3123 3296 1.989165 CGCTGACGGAGAAAGAAGAAG 59.011 52.381 0.00 0.00 34.97 2.85
3158 3331 1.317613 AGAAACGCAAGCACCATTCA 58.682 45.000 0.00 0.00 45.62 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.134521 TCTCCGTGTCATATTGGTGGC 60.135 52.381 0.00 0.00 0.00 5.01
149 150 7.989416 AAAGTGTTAGGTTCGATAATTTCCA 57.011 32.000 0.00 0.00 0.00 3.53
303 305 1.443872 CGGATATACACGCCTCGCC 60.444 63.158 0.00 0.00 0.00 5.54
476 478 3.308473 GGAGCTTTTGGGAGGAATGTAGT 60.308 47.826 0.00 0.00 0.00 2.73
677 684 1.289530 GAGGGGAGAGGGAGAGAAAGA 59.710 57.143 0.00 0.00 0.00 2.52
678 685 1.290732 AGAGGGGAGAGGGAGAGAAAG 59.709 57.143 0.00 0.00 0.00 2.62
679 686 1.289530 GAGAGGGGAGAGGGAGAGAAA 59.710 57.143 0.00 0.00 0.00 2.52
680 687 0.930726 GAGAGGGGAGAGGGAGAGAA 59.069 60.000 0.00 0.00 0.00 2.87
681 688 0.047176 AGAGAGGGGAGAGGGAGAGA 59.953 60.000 0.00 0.00 0.00 3.10
682 689 0.478507 GAGAGAGGGGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
683 690 0.047176 AGAGAGAGGGGAGAGGGAGA 59.953 60.000 0.00 0.00 0.00 3.71
684 691 0.478507 GAGAGAGAGGGGAGAGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
685 692 0.253868 TGAGAGAGAGGGGAGAGGGA 60.254 60.000 0.00 0.00 0.00 4.20
686 693 0.859760 ATGAGAGAGAGGGGAGAGGG 59.140 60.000 0.00 0.00 0.00 4.30
687 694 1.498576 TCATGAGAGAGAGGGGAGAGG 59.501 57.143 0.00 0.00 0.00 3.69
688 695 3.530928 ATCATGAGAGAGAGGGGAGAG 57.469 52.381 0.09 0.00 0.00 3.20
837 846 1.131638 TAGATGGCCATGGTCAGACC 58.868 55.000 26.56 15.69 39.22 3.85
878 887 2.157786 AGGTGGGCCAAGGGAGATATAT 60.158 50.000 8.40 0.00 37.19 0.86
969 981 3.149196 GCCCTCATGAGAGTAGAGAGAG 58.851 54.545 24.62 2.90 40.40 3.20
970 982 2.511637 TGCCCTCATGAGAGTAGAGAGA 59.488 50.000 24.62 0.00 40.40 3.10
971 983 2.942804 TGCCCTCATGAGAGTAGAGAG 58.057 52.381 24.62 4.38 40.40 3.20
1014 1026 2.285024 TGCTGCCCAAATCTTGCCC 61.285 57.895 0.00 0.00 0.00 5.36
1095 1107 3.749064 GTGAGGAGCGCTCGGTCA 61.749 66.667 28.04 28.04 43.66 4.02
1341 1353 2.650116 GCCTCGGAAGTCCTGCTCA 61.650 63.158 0.00 0.00 0.00 4.26
1575 1587 0.666274 TGTCGTCGTGATCTTGTGGC 60.666 55.000 0.00 0.00 0.00 5.01
1605 1617 0.459934 CGACGTCGTAGGAGGAGACT 60.460 60.000 29.08 0.00 37.86 3.24
1607 1619 4.509756 CGACGTCGTAGGAGGAGA 57.490 61.111 29.08 0.00 34.11 3.71
1637 1649 2.164026 GCGAGCTTGAAGAGGAGCG 61.164 63.158 4.70 0.00 43.53 5.03
1693 1705 0.453793 CTTGTGTTGTTGTCCGGCAA 59.546 50.000 0.00 1.09 34.16 4.52
1860 1872 2.345244 CACGCCTTCCTCAGCACT 59.655 61.111 0.00 0.00 0.00 4.40
1899 1911 2.543777 TGCACTTGTGGTAGAACTCC 57.456 50.000 2.81 0.00 0.00 3.85
2006 2018 0.842030 ACCATCCTCTTCACAGGCCA 60.842 55.000 5.01 0.00 32.91 5.36
2009 2021 0.176680 CCGACCATCCTCTTCACAGG 59.823 60.000 0.00 0.00 34.40 4.00
2195 2207 7.614494 ACTCCTACATACTAGTACTAGCTAGC 58.386 42.308 26.54 6.62 41.49 3.42
2196 2208 9.643693 GAACTCCTACATACTAGTACTAGCTAG 57.356 40.741 26.54 19.44 42.96 3.42
2197 2209 9.378504 AGAACTCCTACATACTAGTACTAGCTA 57.621 37.037 26.54 18.28 36.66 3.32
2198 2210 8.266363 AGAACTCCTACATACTAGTACTAGCT 57.734 38.462 26.54 16.93 36.66 3.32
2199 2211 8.907222 AAGAACTCCTACATACTAGTACTAGC 57.093 38.462 26.54 8.20 36.66 3.42
2203 2215 8.248945 TGCAAAAGAACTCCTACATACTAGTAC 58.751 37.037 4.31 0.00 0.00 2.73
2204 2216 8.357290 TGCAAAAGAACTCCTACATACTAGTA 57.643 34.615 4.77 4.77 0.00 1.82
2205 2217 7.241042 TGCAAAAGAACTCCTACATACTAGT 57.759 36.000 0.00 0.00 0.00 2.57
2206 2218 8.607459 CATTGCAAAAGAACTCCTACATACTAG 58.393 37.037 1.71 0.00 0.00 2.57
2380 2392 0.035458 AGGAGGCGACCAAAGAACAG 59.965 55.000 6.55 0.00 0.00 3.16
2393 2405 1.578206 GAGACCGCAACAAAGGAGGC 61.578 60.000 0.00 0.00 0.00 4.70
2426 2438 2.914059 AGAACACAAAACACGCTAGGT 58.086 42.857 0.00 0.00 0.00 3.08
2466 2478 6.670027 GGAGGGAGTATATATGATCACTTGGT 59.330 42.308 0.00 0.00 0.00 3.67
2468 2480 6.378564 ACGGAGGGAGTATATATGATCACTTG 59.621 42.308 0.00 4.87 0.00 3.16
2549 2561 3.254014 ATCACTTGCCGCGTTGCAC 62.254 57.895 9.63 0.00 41.88 4.57
2587 2599 2.430921 CTGACCACCACGAGTCGC 60.431 66.667 13.59 0.00 35.71 5.19
2589 2601 2.430921 CGCTGACCACCACGAGTC 60.431 66.667 0.00 0.00 0.00 3.36
2595 2607 1.404479 AAGTACCACGCTGACCACCA 61.404 55.000 0.00 0.00 0.00 4.17
2671 2683 0.980231 GAGGGAGAGCACATGGTCCT 60.980 60.000 7.44 0.00 43.11 3.85
2737 2750 0.878523 CGCACGGAACAACTTCCTCA 60.879 55.000 0.00 0.00 43.73 3.86
2779 2792 1.405526 GCCTCTCCAAGTATCGCAACA 60.406 52.381 0.00 0.00 0.00 3.33
2826 2839 1.801512 CTGTCATTCGCGTCGCTGA 60.802 57.895 16.36 9.62 0.00 4.26
2827 2840 2.691522 CTGTCATTCGCGTCGCTG 59.308 61.111 16.36 7.15 0.00 5.18
2834 2847 4.778143 ACCCCGCCTGTCATTCGC 62.778 66.667 0.00 0.00 0.00 4.70
2845 2858 0.035739 TTAAACCACTCTCACCCCGC 59.964 55.000 0.00 0.00 0.00 6.13
2848 2861 2.160205 GGCTTTAAACCACTCTCACCC 58.840 52.381 2.96 0.00 0.00 4.61
2965 3138 2.028125 TTCCGCGATCTCCACCATCC 62.028 60.000 8.23 0.00 0.00 3.51
2979 3152 2.279784 CCTCATCCTCGCTTCCGC 60.280 66.667 0.00 0.00 0.00 5.54
2982 3155 0.827368 AACTCCCTCATCCTCGCTTC 59.173 55.000 0.00 0.00 0.00 3.86
3030 3203 2.343163 GACCCGATCTCGAGCAGGTG 62.343 65.000 16.81 11.51 43.02 4.00
3031 3204 2.043852 ACCCGATCTCGAGCAGGT 60.044 61.111 7.81 8.54 43.02 4.00
3032 3205 1.459455 ATGACCCGATCTCGAGCAGG 61.459 60.000 7.81 10.41 43.02 4.85
3033 3206 0.318529 CATGACCCGATCTCGAGCAG 60.319 60.000 7.81 0.91 43.02 4.24
3034 3207 1.735973 CATGACCCGATCTCGAGCA 59.264 57.895 7.81 0.00 43.02 4.26
3035 3208 1.006805 CCATGACCCGATCTCGAGC 60.007 63.158 7.81 0.00 43.02 5.03
3036 3209 0.747255 AACCATGACCCGATCTCGAG 59.253 55.000 5.93 5.93 43.02 4.04
3037 3210 0.744874 GAACCATGACCCGATCTCGA 59.255 55.000 0.22 0.00 43.02 4.04
3038 3211 0.459899 TGAACCATGACCCGATCTCG 59.540 55.000 0.00 0.00 39.44 4.04
3039 3212 2.691409 TTGAACCATGACCCGATCTC 57.309 50.000 0.00 0.00 0.00 2.75
3040 3213 4.073293 GTATTGAACCATGACCCGATCT 57.927 45.455 0.00 0.00 0.00 2.75
3053 3226 4.889832 CATCTCCTGCTTGGTATTGAAC 57.110 45.455 0.00 0.00 37.07 3.18
3066 3239 0.250381 GCCTCCATCTGCATCTCCTG 60.250 60.000 0.00 0.00 0.00 3.86
3067 3240 0.693430 TGCCTCCATCTGCATCTCCT 60.693 55.000 0.00 0.00 31.31 3.69
3068 3241 0.534652 GTGCCTCCATCTGCATCTCC 60.535 60.000 0.00 0.00 40.07 3.71
3069 3242 0.179702 TGTGCCTCCATCTGCATCTC 59.820 55.000 0.00 0.00 40.07 2.75
3070 3243 0.180642 CTGTGCCTCCATCTGCATCT 59.819 55.000 0.00 0.00 40.07 2.90
3071 3244 0.179702 TCTGTGCCTCCATCTGCATC 59.820 55.000 0.00 0.00 40.07 3.91
3072 3245 0.107312 GTCTGTGCCTCCATCTGCAT 60.107 55.000 0.00 0.00 40.07 3.96
3073 3246 1.297689 GTCTGTGCCTCCATCTGCA 59.702 57.895 0.00 0.00 34.54 4.41
3074 3247 1.812922 CGTCTGTGCCTCCATCTGC 60.813 63.158 0.00 0.00 0.00 4.26
3075 3248 1.153489 CCGTCTGTGCCTCCATCTG 60.153 63.158 0.00 0.00 0.00 2.90
3076 3249 1.610673 ACCGTCTGTGCCTCCATCT 60.611 57.895 0.00 0.00 0.00 2.90
3086 3259 1.079819 CGAATCCAGCACCGTCTGT 60.080 57.895 0.00 0.00 32.32 3.41
3088 3261 2.125512 GCGAATCCAGCACCGTCT 60.126 61.111 0.00 0.00 34.19 4.18
3090 3263 2.434884 CAGCGAATCCAGCACCGT 60.435 61.111 0.00 0.00 37.01 4.83
3104 3277 2.342179 CCTTCTTCTTTCTCCGTCAGC 58.658 52.381 0.00 0.00 0.00 4.26
3120 3293 6.273825 GTTTCTTCTTGAAAAGTTCCCCTTC 58.726 40.000 0.00 0.00 46.34 3.46
3123 3296 4.607955 CGTTTCTTCTTGAAAAGTTCCCC 58.392 43.478 0.00 0.00 46.34 4.81
3158 3331 2.440409 GCCAACATCAACATCTCCAGT 58.560 47.619 0.00 0.00 0.00 4.00
3167 3340 0.451783 GGTCCATCGCCAACATCAAC 59.548 55.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.