Multiple sequence alignment - TraesCS4B01G087700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G087700 chr4B 100.000 2405 0 0 1 2405 88282911 88280507 0.000000e+00 4442
1 TraesCS4B01G087700 chr4B 92.807 431 30 1 1975 2405 455707420 455706991 7.300000e-175 623
2 TraesCS4B01G087700 chr1B 96.932 1988 51 6 1 1986 187725087 187723108 0.000000e+00 3325
3 TraesCS4B01G087700 chr1B 95.844 818 31 3 1 818 234748480 234749294 0.000000e+00 1319
4 TraesCS4B01G087700 chr2B 96.208 1978 58 8 1 1975 339913399 339915362 0.000000e+00 3221
5 TraesCS4B01G087700 chr2B 93.088 434 29 1 1972 2405 160328440 160328872 3.370000e-178 634
6 TraesCS4B01G087700 chr2B 92.857 434 30 1 1972 2405 698668078 698668510 1.570000e-176 628
7 TraesCS4B01G087700 chrUn 95.913 1982 70 7 1 1979 57122027 57120054 0.000000e+00 3201
8 TraesCS4B01G087700 chr1D 96.939 1503 39 4 473 1975 244916258 244917753 0.000000e+00 2514
9 TraesCS4B01G087700 chr1D 97.708 480 10 1 1 480 244869674 244870152 0.000000e+00 824
10 TraesCS4B01G087700 chr1A 89.609 1867 159 21 126 1976 316575859 316574012 0.000000e+00 2340
11 TraesCS4B01G087700 chr5B 89.333 1125 73 15 880 1975 236082003 236083109 0.000000e+00 1369
12 TraesCS4B01G087700 chr5B 93.355 903 38 6 1 898 236080404 236081289 0.000000e+00 1315
13 TraesCS4B01G087700 chr7A 92.593 864 47 3 472 1334 485865937 485866784 0.000000e+00 1225
14 TraesCS4B01G087700 chr7A 92.254 865 48 8 472 1334 486317665 486318512 0.000000e+00 1208
15 TraesCS4B01G087700 chr7A 91.735 859 53 4 472 1329 496598122 496598963 0.000000e+00 1177
16 TraesCS4B01G087700 chr7A 91.551 864 56 3 472 1334 502892295 502891448 0.000000e+00 1175
17 TraesCS4B01G087700 chr7A 91.561 865 54 5 472 1334 505171748 505172595 0.000000e+00 1175
18 TraesCS4B01G087700 chr7A 90.031 642 45 8 1336 1975 496610083 496610707 0.000000e+00 813
19 TraesCS4B01G087700 chr7A 89.580 643 48 6 1336 1976 486318674 486319299 0.000000e+00 798
20 TraesCS4B01G087700 chr7A 89.564 642 48 8 1336 1975 485866946 485867570 0.000000e+00 797
21 TraesCS4B01G087700 chr7A 89.408 642 48 9 1336 1975 502891286 502890663 0.000000e+00 791
22 TraesCS4B01G087700 chr7A 88.941 642 51 10 1336 1975 505172757 505173380 0.000000e+00 774
23 TraesCS4B01G087700 chr7A 94.023 435 17 5 1 430 505171312 505171742 0.000000e+00 651
24 TraesCS4B01G087700 chr7A 92.986 442 18 5 1 433 496597682 496598119 1.210000e-177 632
25 TraesCS4B01G087700 chr7A 92.825 446 15 5 1 433 485865493 485865934 4.360000e-177 630
26 TraesCS4B01G087700 chr7B 94.457 433 23 1 1972 2404 305135934 305136365 0.000000e+00 665
27 TraesCS4B01G087700 chr7B 94.200 431 24 1 1975 2405 511361994 511361565 0.000000e+00 656
28 TraesCS4B01G087700 chr7B 93.039 431 29 1 1975 2405 465034008 465033579 1.570000e-176 628
29 TraesCS4B01G087700 chr3B 93.240 429 27 2 1977 2405 622411901 622412327 4.360000e-177 630
30 TraesCS4B01G087700 chr6B 92.857 434 30 1 1972 2405 179922422 179922854 1.570000e-176 628
31 TraesCS4B01G087700 chr6B 92.857 434 29 2 1972 2405 337828474 337828905 1.570000e-176 628


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G087700 chr4B 88280507 88282911 2404 True 4442.000000 4442 100.000000 1 2405 1 chr4B.!!$R1 2404
1 TraesCS4B01G087700 chr1B 187723108 187725087 1979 True 3325.000000 3325 96.932000 1 1986 1 chr1B.!!$R1 1985
2 TraesCS4B01G087700 chr1B 234748480 234749294 814 False 1319.000000 1319 95.844000 1 818 1 chr1B.!!$F1 817
3 TraesCS4B01G087700 chr2B 339913399 339915362 1963 False 3221.000000 3221 96.208000 1 1975 1 chr2B.!!$F2 1974
4 TraesCS4B01G087700 chrUn 57120054 57122027 1973 True 3201.000000 3201 95.913000 1 1979 1 chrUn.!!$R1 1978
5 TraesCS4B01G087700 chr1D 244916258 244917753 1495 False 2514.000000 2514 96.939000 473 1975 1 chr1D.!!$F2 1502
6 TraesCS4B01G087700 chr1A 316574012 316575859 1847 True 2340.000000 2340 89.609000 126 1976 1 chr1A.!!$R1 1850
7 TraesCS4B01G087700 chr5B 236080404 236083109 2705 False 1342.000000 1369 91.344000 1 1975 2 chr5B.!!$F1 1974
8 TraesCS4B01G087700 chr7A 486317665 486319299 1634 False 1003.000000 1208 90.917000 472 1976 2 chr7A.!!$F3 1504
9 TraesCS4B01G087700 chr7A 502890663 502892295 1632 True 983.000000 1175 90.479500 472 1975 2 chr7A.!!$R1 1503
10 TraesCS4B01G087700 chr7A 496597682 496598963 1281 False 904.500000 1177 92.360500 1 1329 2 chr7A.!!$F4 1328
11 TraesCS4B01G087700 chr7A 485865493 485867570 2077 False 884.000000 1225 91.660667 1 1975 3 chr7A.!!$F2 1974
12 TraesCS4B01G087700 chr7A 505171312 505173380 2068 False 866.666667 1175 91.508333 1 1975 3 chr7A.!!$F5 1974
13 TraesCS4B01G087700 chr7A 496610083 496610707 624 False 813.000000 813 90.031000 1336 1975 1 chr7A.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 304 4.917906 AATAAGAAGTGCCAGGAGACTT 57.082 40.909 4.32 4.32 40.21 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2949 0.037447 AGAGCCCTTTTCAGGTCAGC 59.963 55.0 0.0 0.0 38.79 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 304 4.917906 AATAAGAAGTGCCAGGAGACTT 57.082 40.909 4.32 4.32 40.21 3.01
341 356 7.870509 AATTCACTGCAGCTCTTTTGATATA 57.129 32.000 15.27 0.00 0.00 0.86
342 357 8.461249 AATTCACTGCAGCTCTTTTGATATAT 57.539 30.769 15.27 0.00 0.00 0.86
343 358 9.565090 AATTCACTGCAGCTCTTTTGATATATA 57.435 29.630 15.27 0.00 0.00 0.86
353 374 9.289782 AGCTCTTTTGATATATATTTTTCCGCT 57.710 29.630 0.00 0.00 0.00 5.52
765 789 5.545588 AGAACGATGCTATGCAATATGAGT 58.454 37.500 0.00 0.00 43.62 3.41
793 817 7.287061 TGGTCATATAACTTGGGTAATGGAAG 58.713 38.462 0.00 0.00 0.00 3.46
794 818 7.092174 TGGTCATATAACTTGGGTAATGGAAGT 60.092 37.037 0.00 0.00 0.00 3.01
1091 1856 4.507710 GACACTGGTATGCTCAATGAAGA 58.492 43.478 0.00 0.00 0.00 2.87
1207 1972 6.878389 AGGTGCTAATATAGAGACGTACCTAC 59.122 42.308 0.00 0.00 33.38 3.18
1273 2064 2.043227 CTAGCCTAAAGGAGGGGTCAG 58.957 57.143 0.00 0.00 46.81 3.51
1285 2076 4.106663 AGGAGGGGTCAGGTATAGTAAGAG 59.893 50.000 0.00 0.00 0.00 2.85
1382 2333 6.044637 TCACAGTTGGGGTTTAACCTACTATT 59.955 38.462 14.27 3.86 41.13 1.73
1686 2646 5.185249 GTGACCAGATAGTTCCTACACTTGA 59.815 44.000 0.00 0.00 0.00 3.02
1782 2742 5.601583 TGCAATATTCACATCCTGCATTT 57.398 34.783 0.00 0.00 35.02 2.32
1986 2948 3.242969 TGACGACTAGTAAGGCTAATGCG 60.243 47.826 0.00 0.00 40.82 4.73
1987 2949 2.034305 ACGACTAGTAAGGCTAATGCGG 59.966 50.000 0.00 0.00 40.82 5.69
1988 2950 2.405172 GACTAGTAAGGCTAATGCGGC 58.595 52.381 0.00 0.00 40.82 6.53
1989 2951 2.036089 GACTAGTAAGGCTAATGCGGCT 59.964 50.000 0.00 0.00 42.15 5.52
1990 2952 2.224066 ACTAGTAAGGCTAATGCGGCTG 60.224 50.000 0.00 0.00 40.00 4.85
1991 2953 0.830648 AGTAAGGCTAATGCGGCTGA 59.169 50.000 0.00 0.00 40.00 4.26
1992 2954 0.938008 GTAAGGCTAATGCGGCTGAC 59.062 55.000 0.00 0.00 40.00 3.51
1993 2955 0.179056 TAAGGCTAATGCGGCTGACC 60.179 55.000 0.00 0.00 40.00 4.02
1994 2956 1.915078 AAGGCTAATGCGGCTGACCT 61.915 55.000 0.00 0.00 40.00 3.85
1995 2957 2.182842 GGCTAATGCGGCTGACCTG 61.183 63.158 0.00 0.00 40.82 4.00
1996 2958 1.153369 GCTAATGCGGCTGACCTGA 60.153 57.895 0.00 0.00 0.00 3.86
1997 2959 0.744414 GCTAATGCGGCTGACCTGAA 60.744 55.000 0.00 0.00 0.00 3.02
1998 2960 1.737838 CTAATGCGGCTGACCTGAAA 58.262 50.000 0.00 0.00 0.00 2.69
1999 2961 2.083774 CTAATGCGGCTGACCTGAAAA 58.916 47.619 0.00 0.00 0.00 2.29
2000 2962 0.883833 AATGCGGCTGACCTGAAAAG 59.116 50.000 0.00 0.00 0.00 2.27
2001 2963 0.962356 ATGCGGCTGACCTGAAAAGG 60.962 55.000 0.00 0.00 0.00 3.11
2002 2964 2.335712 GCGGCTGACCTGAAAAGGG 61.336 63.158 0.00 0.00 0.00 3.95
2003 2965 2.335712 CGGCTGACCTGAAAAGGGC 61.336 63.158 0.00 0.00 37.53 5.19
2004 2966 1.075659 GGCTGACCTGAAAAGGGCT 59.924 57.895 0.00 0.00 38.00 5.19
2005 2967 0.962855 GGCTGACCTGAAAAGGGCTC 60.963 60.000 0.00 0.00 38.00 4.70
2006 2968 0.037447 GCTGACCTGAAAAGGGCTCT 59.963 55.000 0.00 0.00 38.00 4.09
2007 2969 1.546548 GCTGACCTGAAAAGGGCTCTT 60.547 52.381 0.00 0.00 38.00 2.85
2008 2970 2.157738 CTGACCTGAAAAGGGCTCTTG 58.842 52.381 0.00 0.00 38.00 3.02
2009 2971 1.774254 TGACCTGAAAAGGGCTCTTGA 59.226 47.619 0.00 0.00 38.00 3.02
2010 2972 2.376518 TGACCTGAAAAGGGCTCTTGAT 59.623 45.455 0.00 0.00 38.00 2.57
2011 2973 2.751806 GACCTGAAAAGGGCTCTTGATG 59.248 50.000 0.00 0.00 33.10 3.07
2012 2974 1.475682 CCTGAAAAGGGCTCTTGATGC 59.524 52.381 0.00 0.00 32.75 3.91
2013 2975 1.131883 CTGAAAAGGGCTCTTGATGCG 59.868 52.381 0.00 0.00 32.75 4.73
2014 2976 0.453390 GAAAAGGGCTCTTGATGCGG 59.547 55.000 0.00 0.00 32.75 5.69
2015 2977 1.598701 AAAAGGGCTCTTGATGCGGC 61.599 55.000 0.00 0.00 32.75 6.53
2016 2978 4.496336 AGGGCTCTTGATGCGGCC 62.496 66.667 0.00 0.00 45.28 6.13
2017 2979 4.802051 GGGCTCTTGATGCGGCCA 62.802 66.667 2.24 0.00 44.45 5.36
2018 2980 2.751436 GGCTCTTGATGCGGCCAA 60.751 61.111 2.24 0.00 43.59 4.52
2019 2981 2.768492 GGCTCTTGATGCGGCCAAG 61.768 63.158 2.24 11.34 43.59 3.61
2020 2982 2.768492 GCTCTTGATGCGGCCAAGG 61.768 63.158 15.76 9.66 40.88 3.61
2021 2983 1.078214 CTCTTGATGCGGCCAAGGA 60.078 57.895 15.76 0.00 40.88 3.36
2022 2984 1.078214 TCTTGATGCGGCCAAGGAG 60.078 57.895 15.76 0.00 40.88 3.69
2023 2985 1.078214 CTTGATGCGGCCAAGGAGA 60.078 57.895 2.24 0.00 37.83 3.71
2024 2986 1.372087 CTTGATGCGGCCAAGGAGAC 61.372 60.000 2.24 0.00 37.83 3.36
2025 2987 2.892425 GATGCGGCCAAGGAGACG 60.892 66.667 2.24 0.00 0.00 4.18
2030 2992 3.119096 GGCCAAGGAGACGCGTTC 61.119 66.667 15.53 12.91 0.00 3.95
2031 2993 3.119096 GCCAAGGAGACGCGTTCC 61.119 66.667 24.12 24.12 34.83 3.62
2032 2994 2.342279 CCAAGGAGACGCGTTCCA 59.658 61.111 29.35 0.00 37.18 3.53
2033 2995 1.301401 CCAAGGAGACGCGTTCCAA 60.301 57.895 29.35 0.00 37.18 3.53
2034 2996 1.291877 CCAAGGAGACGCGTTCCAAG 61.292 60.000 29.35 22.90 37.18 3.61
2035 2997 0.319555 CAAGGAGACGCGTTCCAAGA 60.320 55.000 29.35 0.00 37.18 3.02
2036 2998 0.608640 AAGGAGACGCGTTCCAAGAT 59.391 50.000 29.35 16.59 37.18 2.40
2037 2999 0.608640 AGGAGACGCGTTCCAAGATT 59.391 50.000 29.35 14.46 37.18 2.40
2038 3000 1.822990 AGGAGACGCGTTCCAAGATTA 59.177 47.619 29.35 0.00 37.18 1.75
2039 3001 2.159226 AGGAGACGCGTTCCAAGATTAG 60.159 50.000 29.35 0.00 37.18 1.73
2040 3002 2.194271 GAGACGCGTTCCAAGATTAGG 58.806 52.381 15.53 0.00 0.00 2.69
2041 3003 1.134788 AGACGCGTTCCAAGATTAGGG 60.135 52.381 15.53 0.00 0.00 3.53
2042 3004 0.899720 ACGCGTTCCAAGATTAGGGA 59.100 50.000 5.58 0.00 0.00 4.20
2043 3005 1.485066 ACGCGTTCCAAGATTAGGGAT 59.515 47.619 5.58 0.00 32.15 3.85
2044 3006 1.867233 CGCGTTCCAAGATTAGGGATG 59.133 52.381 0.00 0.00 32.15 3.51
2045 3007 1.604278 GCGTTCCAAGATTAGGGATGC 59.396 52.381 0.00 0.00 39.36 3.91
2046 3008 1.867233 CGTTCCAAGATTAGGGATGCG 59.133 52.381 0.00 0.00 32.15 4.73
2047 3009 1.604278 GTTCCAAGATTAGGGATGCGC 59.396 52.381 0.00 0.00 32.15 6.09
2048 3010 0.249868 TCCAAGATTAGGGATGCGCG 60.250 55.000 0.00 0.00 0.00 6.86
2049 3011 1.230635 CCAAGATTAGGGATGCGCGG 61.231 60.000 8.83 0.00 0.00 6.46
2050 3012 1.071471 AAGATTAGGGATGCGCGGG 59.929 57.895 8.83 0.00 0.00 6.13
2051 3013 1.407656 AAGATTAGGGATGCGCGGGA 61.408 55.000 8.83 0.00 0.00 5.14
2052 3014 1.374758 GATTAGGGATGCGCGGGAG 60.375 63.158 8.83 0.00 0.00 4.30
2053 3015 2.788191 GATTAGGGATGCGCGGGAGG 62.788 65.000 8.83 0.00 0.00 4.30
2054 3016 4.533124 TAGGGATGCGCGGGAGGA 62.533 66.667 8.83 0.00 0.00 3.71
2058 3020 4.537433 GATGCGCGGGAGGAGCTT 62.537 66.667 8.83 0.00 42.55 3.74
2059 3021 4.537433 ATGCGCGGGAGGAGCTTC 62.537 66.667 8.83 0.00 42.55 3.86
2062 3024 4.856607 CGCGGGAGGAGCTTCGAC 62.857 72.222 0.00 0.00 0.00 4.20
2063 3025 3.760035 GCGGGAGGAGCTTCGACA 61.760 66.667 0.00 0.00 0.00 4.35
2064 3026 2.492090 CGGGAGGAGCTTCGACAG 59.508 66.667 0.00 0.00 0.00 3.51
2065 3027 2.896443 GGGAGGAGCTTCGACAGG 59.104 66.667 0.00 0.00 0.00 4.00
2066 3028 2.185608 GGAGGAGCTTCGACAGGC 59.814 66.667 0.00 0.00 0.00 4.85
2067 3029 2.185608 GAGGAGCTTCGACAGGCC 59.814 66.667 0.00 0.00 0.00 5.19
2068 3030 3.708220 GAGGAGCTTCGACAGGCCG 62.708 68.421 0.00 0.00 0.00 6.13
2069 3031 4.821589 GGAGCTTCGACAGGCCGG 62.822 72.222 0.00 0.00 0.00 6.13
2070 3032 4.821589 GAGCTTCGACAGGCCGGG 62.822 72.222 8.08 1.20 0.00 5.73
2073 3035 3.702048 CTTCGACAGGCCGGGGAA 61.702 66.667 8.08 9.45 0.00 3.97
2074 3036 3.243053 TTCGACAGGCCGGGGAAA 61.243 61.111 8.08 0.00 0.00 3.13
2075 3037 2.536997 CTTCGACAGGCCGGGGAAAT 62.537 60.000 8.08 0.00 0.00 2.17
2076 3038 2.513897 CGACAGGCCGGGGAAATC 60.514 66.667 8.08 0.00 0.00 2.17
2077 3039 2.513897 GACAGGCCGGGGAAATCG 60.514 66.667 8.08 0.00 0.00 3.34
2078 3040 4.796495 ACAGGCCGGGGAAATCGC 62.796 66.667 8.08 0.00 0.00 4.58
2084 3046 3.564027 CGGGGAAATCGCGTCTGC 61.564 66.667 5.77 0.00 45.17 4.26
2085 3047 2.435938 GGGGAAATCGCGTCTGCA 60.436 61.111 5.77 0.00 42.97 4.41
2086 3048 2.038269 GGGGAAATCGCGTCTGCAA 61.038 57.895 5.77 0.00 42.97 4.08
2087 3049 1.582610 GGGGAAATCGCGTCTGCAAA 61.583 55.000 5.77 0.00 42.97 3.68
2088 3050 0.239879 GGGAAATCGCGTCTGCAAAA 59.760 50.000 5.77 0.00 42.97 2.44
2089 3051 1.327507 GGAAATCGCGTCTGCAAAAC 58.672 50.000 5.77 0.00 42.97 2.43
2090 3052 1.069227 GGAAATCGCGTCTGCAAAACT 60.069 47.619 5.77 0.00 42.97 2.66
2091 3053 2.234187 GAAATCGCGTCTGCAAAACTC 58.766 47.619 5.77 0.00 42.97 3.01
2092 3054 1.512926 AATCGCGTCTGCAAAACTCT 58.487 45.000 5.77 0.00 42.97 3.24
2093 3055 1.512926 ATCGCGTCTGCAAAACTCTT 58.487 45.000 5.77 0.00 42.97 2.85
2094 3056 2.143008 TCGCGTCTGCAAAACTCTTA 57.857 45.000 5.77 0.00 42.97 2.10
2095 3057 2.683968 TCGCGTCTGCAAAACTCTTAT 58.316 42.857 5.77 0.00 42.97 1.73
2096 3058 3.064207 TCGCGTCTGCAAAACTCTTATT 58.936 40.909 5.77 0.00 42.97 1.40
2097 3059 3.496884 TCGCGTCTGCAAAACTCTTATTT 59.503 39.130 5.77 0.00 42.97 1.40
2098 3060 3.599514 CGCGTCTGCAAAACTCTTATTTG 59.400 43.478 0.00 0.00 42.97 2.32
2099 3061 4.537015 GCGTCTGCAAAACTCTTATTTGT 58.463 39.130 0.00 0.00 42.15 2.83
2100 3062 4.976116 GCGTCTGCAAAACTCTTATTTGTT 59.024 37.500 0.00 0.00 42.15 2.83
2101 3063 5.108254 GCGTCTGCAAAACTCTTATTTGTTG 60.108 40.000 0.00 0.00 42.15 3.33
2102 3064 5.108254 CGTCTGCAAAACTCTTATTTGTTGC 60.108 40.000 0.00 0.00 39.42 4.17
2103 3065 4.975502 TCTGCAAAACTCTTATTTGTTGCG 59.024 37.500 0.00 0.00 39.42 4.85
2104 3066 4.047822 TGCAAAACTCTTATTTGTTGCGG 58.952 39.130 0.00 0.00 39.42 5.69
2105 3067 4.202060 TGCAAAACTCTTATTTGTTGCGGA 60.202 37.500 0.00 0.00 39.42 5.54
2106 3068 4.923281 GCAAAACTCTTATTTGTTGCGGAT 59.077 37.500 0.00 0.00 39.42 4.18
2107 3069 5.164061 GCAAAACTCTTATTTGTTGCGGATG 60.164 40.000 0.00 0.00 39.42 3.51
2108 3070 5.957842 AAACTCTTATTTGTTGCGGATGA 57.042 34.783 0.00 0.00 0.00 2.92
2109 3071 5.957842 AACTCTTATTTGTTGCGGATGAA 57.042 34.783 0.00 0.00 0.00 2.57
2110 3072 5.551760 ACTCTTATTTGTTGCGGATGAAG 57.448 39.130 0.00 0.00 0.00 3.02
2111 3073 5.003804 ACTCTTATTTGTTGCGGATGAAGT 58.996 37.500 0.00 0.00 0.00 3.01
2112 3074 5.473504 ACTCTTATTTGTTGCGGATGAAGTT 59.526 36.000 0.00 0.00 0.00 2.66
2113 3075 6.016276 ACTCTTATTTGTTGCGGATGAAGTTT 60.016 34.615 0.00 0.00 0.00 2.66
2114 3076 6.744112 TCTTATTTGTTGCGGATGAAGTTTT 58.256 32.000 0.00 0.00 0.00 2.43
2115 3077 7.206687 TCTTATTTGTTGCGGATGAAGTTTTT 58.793 30.769 0.00 0.00 0.00 1.94
2116 3078 8.353684 TCTTATTTGTTGCGGATGAAGTTTTTA 58.646 29.630 0.00 0.00 0.00 1.52
2117 3079 8.514136 TTATTTGTTGCGGATGAAGTTTTTAG 57.486 30.769 0.00 0.00 0.00 1.85
2118 3080 5.759506 TTGTTGCGGATGAAGTTTTTAGA 57.240 34.783 0.00 0.00 0.00 2.10
2119 3081 5.957842 TGTTGCGGATGAAGTTTTTAGAT 57.042 34.783 0.00 0.00 0.00 1.98
2120 3082 5.938322 TGTTGCGGATGAAGTTTTTAGATC 58.062 37.500 0.00 0.00 0.00 2.75
2121 3083 5.106317 TGTTGCGGATGAAGTTTTTAGATCC 60.106 40.000 0.00 0.00 0.00 3.36
2126 3088 6.986904 GGATGAAGTTTTTAGATCCGAAGT 57.013 37.500 0.00 0.00 0.00 3.01
2128 3090 7.907194 GGATGAAGTTTTTAGATCCGAAGTAC 58.093 38.462 0.00 0.00 0.00 2.73
2129 3091 6.939551 TGAAGTTTTTAGATCCGAAGTACG 57.060 37.500 0.00 0.00 42.18 3.67
2130 3092 5.346822 TGAAGTTTTTAGATCCGAAGTACGC 59.653 40.000 0.00 0.00 41.07 4.42
2131 3093 5.069501 AGTTTTTAGATCCGAAGTACGCT 57.930 39.130 0.00 0.00 41.07 5.07
2132 3094 5.100943 AGTTTTTAGATCCGAAGTACGCTC 58.899 41.667 0.00 0.00 41.07 5.03
2133 3095 3.705043 TTTAGATCCGAAGTACGCTCC 57.295 47.619 0.00 0.00 41.07 4.70
2134 3096 2.634815 TAGATCCGAAGTACGCTCCT 57.365 50.000 0.00 0.00 41.07 3.69
2135 3097 2.634815 AGATCCGAAGTACGCTCCTA 57.365 50.000 0.00 0.00 41.07 2.94
2136 3098 3.143211 AGATCCGAAGTACGCTCCTAT 57.857 47.619 0.00 0.00 41.07 2.57
2137 3099 2.814919 AGATCCGAAGTACGCTCCTATG 59.185 50.000 0.00 0.00 41.07 2.23
2138 3100 1.315690 TCCGAAGTACGCTCCTATGG 58.684 55.000 0.00 0.00 41.07 2.74
2139 3101 1.134007 TCCGAAGTACGCTCCTATGGA 60.134 52.381 0.00 0.00 41.07 3.41
2140 3102 1.887198 CCGAAGTACGCTCCTATGGAT 59.113 52.381 0.00 0.00 41.07 3.41
2141 3103 2.095161 CCGAAGTACGCTCCTATGGATC 60.095 54.545 0.00 0.00 41.07 3.36
2142 3104 2.412977 CGAAGTACGCTCCTATGGATCG 60.413 54.545 8.09 8.09 45.33 3.69
2143 3105 2.563261 AGTACGCTCCTATGGATCGA 57.437 50.000 15.30 0.00 42.97 3.59
2144 3106 2.152830 AGTACGCTCCTATGGATCGAC 58.847 52.381 15.30 9.49 42.97 4.20
2145 3107 1.136029 GTACGCTCCTATGGATCGACG 60.136 57.143 15.30 6.83 42.97 5.12
2146 3108 1.442857 CGCTCCTATGGATCGACGC 60.443 63.158 4.09 0.00 42.97 5.19
2147 3109 1.857318 CGCTCCTATGGATCGACGCT 61.857 60.000 4.09 0.00 42.97 5.07
2148 3110 0.387878 GCTCCTATGGATCGACGCTG 60.388 60.000 0.00 0.00 0.00 5.18
2149 3111 0.242286 CTCCTATGGATCGACGCTGG 59.758 60.000 0.00 0.00 0.00 4.85
2150 3112 0.179001 TCCTATGGATCGACGCTGGA 60.179 55.000 0.00 0.00 0.00 3.86
2151 3113 0.242286 CCTATGGATCGACGCTGGAG 59.758 60.000 0.00 0.00 0.00 3.86
2152 3114 0.955178 CTATGGATCGACGCTGGAGT 59.045 55.000 0.00 0.00 0.00 3.85
2153 3115 0.952280 TATGGATCGACGCTGGAGTC 59.048 55.000 0.00 0.00 37.76 3.36
2154 3116 1.739338 ATGGATCGACGCTGGAGTCC 61.739 60.000 0.73 0.73 37.85 3.85
2155 3117 2.122167 GGATCGACGCTGGAGTCCT 61.122 63.158 11.33 0.00 37.85 3.85
2156 3118 0.818445 GGATCGACGCTGGAGTCCTA 60.818 60.000 11.33 0.00 37.85 2.94
2157 3119 0.308376 GATCGACGCTGGAGTCCTAC 59.692 60.000 11.33 1.08 37.85 3.18
2158 3120 0.393944 ATCGACGCTGGAGTCCTACA 60.394 55.000 11.33 0.00 37.85 2.74
2159 3121 1.025113 TCGACGCTGGAGTCCTACAG 61.025 60.000 11.33 1.94 44.38 2.74
2160 3122 1.025113 CGACGCTGGAGTCCTACAGA 61.025 60.000 10.78 0.00 44.32 3.41
2161 3123 0.452585 GACGCTGGAGTCCTACAGAC 59.547 60.000 10.78 1.42 44.32 3.51
2169 3131 3.571741 GTCCTACAGACGCCTATGC 57.428 57.895 0.00 0.00 35.30 3.14
2170 3132 0.744874 GTCCTACAGACGCCTATGCA 59.255 55.000 0.00 0.00 35.30 3.96
2171 3133 1.032794 TCCTACAGACGCCTATGCAG 58.967 55.000 0.00 0.00 37.32 4.41
2172 3134 1.032794 CCTACAGACGCCTATGCAGA 58.967 55.000 0.00 0.00 37.32 4.26
2173 3135 1.615883 CCTACAGACGCCTATGCAGAT 59.384 52.381 0.00 0.00 37.32 2.90
2174 3136 2.036475 CCTACAGACGCCTATGCAGATT 59.964 50.000 0.00 0.00 37.32 2.40
2175 3137 2.698855 ACAGACGCCTATGCAGATTT 57.301 45.000 0.00 0.00 37.32 2.17
2176 3138 2.283298 ACAGACGCCTATGCAGATTTG 58.717 47.619 0.00 0.00 37.32 2.32
2177 3139 1.600957 CAGACGCCTATGCAGATTTGG 59.399 52.381 0.00 0.00 37.32 3.28
2178 3140 0.308993 GACGCCTATGCAGATTTGGC 59.691 55.000 0.15 0.15 40.14 4.52
2179 3141 0.394216 ACGCCTATGCAGATTTGGCA 60.394 50.000 10.31 0.00 46.66 4.92
2180 3142 0.740149 CGCCTATGCAGATTTGGCAA 59.260 50.000 10.31 0.00 45.60 4.52
2181 3143 1.134753 CGCCTATGCAGATTTGGCAAA 59.865 47.619 16.01 16.01 45.60 3.68
2182 3144 2.797087 CGCCTATGCAGATTTGGCAAAG 60.797 50.000 18.61 6.09 45.60 2.77
2183 3145 2.428171 GCCTATGCAGATTTGGCAAAGA 59.572 45.455 18.61 0.00 45.60 2.52
2184 3146 3.490419 GCCTATGCAGATTTGGCAAAGAG 60.490 47.826 18.61 11.10 45.60 2.85
2185 3147 3.698040 CCTATGCAGATTTGGCAAAGAGT 59.302 43.478 18.61 1.11 45.60 3.24
2186 3148 4.883585 CCTATGCAGATTTGGCAAAGAGTA 59.116 41.667 18.61 10.04 45.60 2.59
2187 3149 4.708726 ATGCAGATTTGGCAAAGAGTAC 57.291 40.909 18.61 7.23 45.60 2.73
2188 3150 2.483877 TGCAGATTTGGCAAAGAGTACG 59.516 45.455 18.61 4.79 38.54 3.67
2189 3151 2.159517 GCAGATTTGGCAAAGAGTACGG 60.160 50.000 18.61 8.65 0.00 4.02
2190 3152 2.084546 AGATTTGGCAAAGAGTACGGC 58.915 47.619 18.61 0.78 0.00 5.68
2191 3153 2.084546 GATTTGGCAAAGAGTACGGCT 58.915 47.619 18.61 0.00 0.00 5.52
2192 3154 1.234821 TTTGGCAAAGAGTACGGCTG 58.765 50.000 8.93 0.00 0.00 4.85
2193 3155 0.394938 TTGGCAAAGAGTACGGCTGA 59.605 50.000 0.00 0.00 0.00 4.26
2194 3156 0.613260 TGGCAAAGAGTACGGCTGAT 59.387 50.000 0.00 0.00 0.00 2.90
2195 3157 1.009829 GGCAAAGAGTACGGCTGATG 58.990 55.000 0.00 0.00 0.00 3.07
2196 3158 0.375106 GCAAAGAGTACGGCTGATGC 59.625 55.000 0.00 11.26 38.76 3.91
2197 3159 1.725641 CAAAGAGTACGGCTGATGCA 58.274 50.000 0.00 0.00 41.91 3.96
2198 3160 1.662629 CAAAGAGTACGGCTGATGCAG 59.337 52.381 0.00 0.00 41.91 4.41
2210 3172 2.322161 CTGATGCAGCCAAGTTTTTCG 58.678 47.619 0.00 0.00 0.00 3.46
2211 3173 1.952990 TGATGCAGCCAAGTTTTTCGA 59.047 42.857 0.00 0.00 0.00 3.71
2212 3174 2.030893 TGATGCAGCCAAGTTTTTCGAG 60.031 45.455 0.00 0.00 0.00 4.04
2213 3175 0.667993 TGCAGCCAAGTTTTTCGAGG 59.332 50.000 0.00 0.00 0.00 4.63
2214 3176 0.951558 GCAGCCAAGTTTTTCGAGGA 59.048 50.000 0.00 0.00 0.00 3.71
2215 3177 1.541588 GCAGCCAAGTTTTTCGAGGAT 59.458 47.619 0.00 0.00 0.00 3.24
2216 3178 2.414691 GCAGCCAAGTTTTTCGAGGATC 60.415 50.000 0.00 0.00 0.00 3.36
2217 3179 2.813754 CAGCCAAGTTTTTCGAGGATCA 59.186 45.455 0.00 0.00 33.17 2.92
2218 3180 3.253188 CAGCCAAGTTTTTCGAGGATCAA 59.747 43.478 0.00 0.00 33.17 2.57
2219 3181 3.888930 AGCCAAGTTTTTCGAGGATCAAA 59.111 39.130 0.00 0.00 33.17 2.69
2220 3182 4.340950 AGCCAAGTTTTTCGAGGATCAAAA 59.659 37.500 0.00 0.00 33.17 2.44
2221 3183 5.047188 GCCAAGTTTTTCGAGGATCAAAAA 58.953 37.500 0.00 0.00 34.86 1.94
2222 3184 5.175673 GCCAAGTTTTTCGAGGATCAAAAAG 59.824 40.000 0.00 0.00 36.51 2.27
2223 3185 6.503524 CCAAGTTTTTCGAGGATCAAAAAGA 58.496 36.000 0.00 0.00 36.51 2.52
2224 3186 7.147976 CCAAGTTTTTCGAGGATCAAAAAGAT 58.852 34.615 0.00 0.00 36.51 2.40
2225 3187 7.115378 CCAAGTTTTTCGAGGATCAAAAAGATG 59.885 37.037 0.00 1.93 36.51 2.90
2226 3188 7.510549 AGTTTTTCGAGGATCAAAAAGATGA 57.489 32.000 0.00 0.00 36.51 2.92
2227 3189 8.115490 AGTTTTTCGAGGATCAAAAAGATGAT 57.885 30.769 0.00 0.00 42.62 2.45
2228 3190 8.025445 AGTTTTTCGAGGATCAAAAAGATGATG 58.975 33.333 0.00 0.00 40.08 3.07
2229 3191 7.686438 TTTTCGAGGATCAAAAAGATGATGA 57.314 32.000 0.00 0.00 40.08 2.92
2230 3192 7.686438 TTTCGAGGATCAAAAAGATGATGAA 57.314 32.000 0.00 0.00 40.08 2.57
2231 3193 6.915544 TCGAGGATCAAAAAGATGATGAAG 57.084 37.500 0.00 0.00 40.08 3.02
2232 3194 6.409704 TCGAGGATCAAAAAGATGATGAAGT 58.590 36.000 0.00 0.00 40.08 3.01
2233 3195 6.314648 TCGAGGATCAAAAAGATGATGAAGTG 59.685 38.462 0.00 0.00 40.08 3.16
2234 3196 6.457934 CGAGGATCAAAAAGATGATGAAGTGG 60.458 42.308 0.00 0.00 40.08 4.00
2235 3197 6.487828 AGGATCAAAAAGATGATGAAGTGGA 58.512 36.000 0.00 0.00 40.08 4.02
2236 3198 6.950041 AGGATCAAAAAGATGATGAAGTGGAA 59.050 34.615 0.00 0.00 40.08 3.53
2237 3199 7.452501 AGGATCAAAAAGATGATGAAGTGGAAA 59.547 33.333 0.00 0.00 40.08 3.13
2238 3200 8.090214 GGATCAAAAAGATGATGAAGTGGAAAA 58.910 33.333 0.00 0.00 40.08 2.29
2239 3201 9.136952 GATCAAAAAGATGATGAAGTGGAAAAG 57.863 33.333 0.00 0.00 40.08 2.27
2240 3202 6.925165 TCAAAAAGATGATGAAGTGGAAAAGC 59.075 34.615 0.00 0.00 0.00 3.51
2241 3203 6.661304 AAAAGATGATGAAGTGGAAAAGCT 57.339 33.333 0.00 0.00 0.00 3.74
2242 3204 7.765695 AAAAGATGATGAAGTGGAAAAGCTA 57.234 32.000 0.00 0.00 0.00 3.32
2243 3205 7.951347 AAAGATGATGAAGTGGAAAAGCTAT 57.049 32.000 0.00 0.00 0.00 2.97
2244 3206 7.951347 AAGATGATGAAGTGGAAAAGCTATT 57.049 32.000 0.00 0.00 0.00 1.73
2245 3207 7.565323 AGATGATGAAGTGGAAAAGCTATTC 57.435 36.000 0.00 0.00 0.00 1.75
2246 3208 7.344913 AGATGATGAAGTGGAAAAGCTATTCT 58.655 34.615 0.00 0.00 0.00 2.40
2247 3209 6.748333 TGATGAAGTGGAAAAGCTATTCTG 57.252 37.500 0.00 0.00 0.00 3.02
2248 3210 5.649395 TGATGAAGTGGAAAAGCTATTCTGG 59.351 40.000 0.00 0.00 0.00 3.86
2249 3211 4.985538 TGAAGTGGAAAAGCTATTCTGGT 58.014 39.130 0.00 0.00 0.00 4.00
2250 3212 5.003804 TGAAGTGGAAAAGCTATTCTGGTC 58.996 41.667 0.00 0.00 0.00 4.02
2251 3213 3.600388 AGTGGAAAAGCTATTCTGGTCG 58.400 45.455 0.00 0.00 0.00 4.79
2252 3214 2.096013 GTGGAAAAGCTATTCTGGTCGC 59.904 50.000 0.00 0.00 0.00 5.19
2253 3215 2.290008 TGGAAAAGCTATTCTGGTCGCA 60.290 45.455 0.00 0.00 0.00 5.10
2254 3216 2.352960 GGAAAAGCTATTCTGGTCGCAG 59.647 50.000 0.00 0.00 0.00 5.18
2255 3217 2.770164 AAAGCTATTCTGGTCGCAGT 57.230 45.000 0.00 0.00 0.00 4.40
2256 3218 2.770164 AAGCTATTCTGGTCGCAGTT 57.230 45.000 0.00 0.00 0.00 3.16
2257 3219 2.301577 AGCTATTCTGGTCGCAGTTC 57.698 50.000 0.00 0.00 0.00 3.01
2258 3220 1.550524 AGCTATTCTGGTCGCAGTTCA 59.449 47.619 0.00 0.00 0.00 3.18
2259 3221 1.929836 GCTATTCTGGTCGCAGTTCAG 59.070 52.381 0.00 0.00 0.00 3.02
2260 3222 1.929836 CTATTCTGGTCGCAGTTCAGC 59.070 52.381 0.00 0.00 0.00 4.26
2268 3230 2.558313 GCAGTTCAGCGCTCCAAC 59.442 61.111 7.13 14.05 0.00 3.77
2269 3231 2.856032 CAGTTCAGCGCTCCAACG 59.144 61.111 7.13 6.58 0.00 4.10
2270 3232 1.956170 CAGTTCAGCGCTCCAACGT 60.956 57.895 7.13 1.15 34.88 3.99
2271 3233 1.956170 AGTTCAGCGCTCCAACGTG 60.956 57.895 7.13 0.00 34.88 4.49
2272 3234 3.345808 TTCAGCGCTCCAACGTGC 61.346 61.111 7.13 0.00 40.58 5.34
2273 3235 4.600576 TCAGCGCTCCAACGTGCA 62.601 61.111 7.13 0.00 42.62 4.57
2274 3236 4.374702 CAGCGCTCCAACGTGCAC 62.375 66.667 7.13 6.82 42.62 4.57
2275 3237 4.908687 AGCGCTCCAACGTGCACA 62.909 61.111 18.64 0.00 42.62 4.57
2276 3238 3.726517 GCGCTCCAACGTGCACAT 61.727 61.111 18.64 0.00 40.04 3.21
2277 3239 2.945984 CGCTCCAACGTGCACATT 59.054 55.556 18.64 4.57 0.00 2.71
2278 3240 1.440850 CGCTCCAACGTGCACATTG 60.441 57.895 18.36 18.36 0.00 2.82
2279 3241 1.730547 GCTCCAACGTGCACATTGC 60.731 57.895 19.77 5.41 45.29 3.56
2280 3242 1.081242 CTCCAACGTGCACATTGCC 60.081 57.895 19.77 0.00 44.23 4.52
2281 3243 1.518056 CTCCAACGTGCACATTGCCT 61.518 55.000 19.77 0.00 44.23 4.75
2282 3244 1.106351 TCCAACGTGCACATTGCCTT 61.106 50.000 19.77 0.00 44.23 4.35
2283 3245 0.249405 CCAACGTGCACATTGCCTTT 60.249 50.000 19.77 0.00 44.23 3.11
2284 3246 0.854062 CAACGTGCACATTGCCTTTG 59.146 50.000 13.24 1.96 44.23 2.77
2285 3247 0.743688 AACGTGCACATTGCCTTTGA 59.256 45.000 18.64 0.00 44.23 2.69
2286 3248 0.311790 ACGTGCACATTGCCTTTGAG 59.688 50.000 18.64 0.00 44.23 3.02
2287 3249 0.311790 CGTGCACATTGCCTTTGAGT 59.688 50.000 18.64 0.00 44.23 3.41
2288 3250 1.774639 GTGCACATTGCCTTTGAGTG 58.225 50.000 13.17 0.00 44.23 3.51
2289 3251 1.337703 GTGCACATTGCCTTTGAGTGA 59.662 47.619 13.17 0.00 44.23 3.41
2290 3252 1.610038 TGCACATTGCCTTTGAGTGAG 59.390 47.619 0.00 0.00 44.23 3.51
2291 3253 1.881973 GCACATTGCCTTTGAGTGAGA 59.118 47.619 0.00 0.00 37.42 3.27
2292 3254 2.095364 GCACATTGCCTTTGAGTGAGAG 60.095 50.000 0.00 0.00 37.42 3.20
2293 3255 2.486982 CACATTGCCTTTGAGTGAGAGG 59.513 50.000 0.00 0.00 32.14 3.69
2294 3256 2.373169 ACATTGCCTTTGAGTGAGAGGA 59.627 45.455 0.00 0.00 32.11 3.71
2295 3257 3.009916 ACATTGCCTTTGAGTGAGAGGAT 59.990 43.478 0.00 0.00 32.11 3.24
2296 3258 2.775911 TGCCTTTGAGTGAGAGGATG 57.224 50.000 0.00 0.00 32.11 3.51
2297 3259 1.280133 TGCCTTTGAGTGAGAGGATGG 59.720 52.381 0.00 0.00 32.11 3.51
2298 3260 2.016096 GCCTTTGAGTGAGAGGATGGC 61.016 57.143 0.00 0.00 32.11 4.40
2299 3261 1.558756 CCTTTGAGTGAGAGGATGGCT 59.441 52.381 0.00 0.00 32.11 4.75
2300 3262 2.630158 CTTTGAGTGAGAGGATGGCTG 58.370 52.381 0.00 0.00 0.00 4.85
2301 3263 0.251354 TTGAGTGAGAGGATGGCTGC 59.749 55.000 0.00 0.00 0.00 5.25
2302 3264 0.616964 TGAGTGAGAGGATGGCTGCT 60.617 55.000 0.00 0.00 0.00 4.24
2303 3265 1.342374 TGAGTGAGAGGATGGCTGCTA 60.342 52.381 0.00 0.00 0.00 3.49
2304 3266 1.969923 GAGTGAGAGGATGGCTGCTAT 59.030 52.381 0.00 0.00 0.00 2.97
2305 3267 1.693062 AGTGAGAGGATGGCTGCTATG 59.307 52.381 2.27 0.00 0.00 2.23
2306 3268 1.054231 TGAGAGGATGGCTGCTATGG 58.946 55.000 2.27 0.00 0.00 2.74
2307 3269 0.321475 GAGAGGATGGCTGCTATGGC 60.321 60.000 2.27 0.00 39.26 4.40
2313 3275 4.247380 GGCTGCTATGGCCGAGCT 62.247 66.667 25.17 0.00 40.76 4.09
2314 3276 2.664518 GCTGCTATGGCCGAGCTC 60.665 66.667 25.17 15.47 40.76 4.09
2315 3277 2.030262 CTGCTATGGCCGAGCTCC 59.970 66.667 25.17 0.00 40.76 4.70
2316 3278 2.763710 TGCTATGGCCGAGCTCCA 60.764 61.111 25.17 0.74 40.76 3.86
2317 3279 2.280457 GCTATGGCCGAGCTCCAC 60.280 66.667 19.63 0.00 36.26 4.02
2318 3280 3.094062 GCTATGGCCGAGCTCCACA 62.094 63.158 19.63 5.09 36.26 4.17
2319 3281 1.068753 CTATGGCCGAGCTCCACAG 59.931 63.158 8.47 0.00 36.26 3.66
2320 3282 2.374830 CTATGGCCGAGCTCCACAGG 62.375 65.000 8.47 4.44 36.26 4.00
2322 3284 4.021925 GGCCGAGCTCCACAGGTT 62.022 66.667 8.47 0.00 0.00 3.50
2323 3285 2.743928 GCCGAGCTCCACAGGTTG 60.744 66.667 8.47 0.00 0.00 3.77
2324 3286 2.743718 CCGAGCTCCACAGGTTGT 59.256 61.111 8.47 0.00 30.32 3.32
2325 3287 1.374758 CCGAGCTCCACAGGTTGTC 60.375 63.158 8.47 0.00 30.32 3.18
2326 3288 1.374758 CGAGCTCCACAGGTTGTCC 60.375 63.158 8.47 0.00 0.00 4.02
2327 3289 1.374758 GAGCTCCACAGGTTGTCCG 60.375 63.158 0.87 0.00 39.05 4.79
2328 3290 2.358737 GCTCCACAGGTTGTCCGG 60.359 66.667 0.00 0.00 39.05 5.14
2329 3291 3.148084 CTCCACAGGTTGTCCGGT 58.852 61.111 0.00 0.00 42.53 5.28
2330 3292 1.004918 CTCCACAGGTTGTCCGGTC 60.005 63.158 0.00 0.00 39.97 4.79
2331 3293 1.458777 TCCACAGGTTGTCCGGTCT 60.459 57.895 0.00 0.00 39.97 3.85
2332 3294 1.052124 TCCACAGGTTGTCCGGTCTT 61.052 55.000 0.00 0.00 39.97 3.01
2333 3295 0.884704 CCACAGGTTGTCCGGTCTTG 60.885 60.000 0.00 0.46 39.97 3.02
2334 3296 1.227853 ACAGGTTGTCCGGTCTTGC 60.228 57.895 0.00 0.00 37.59 4.01
2335 3297 1.227823 CAGGTTGTCCGGTCTTGCA 60.228 57.895 0.00 0.00 39.05 4.08
2336 3298 0.817634 CAGGTTGTCCGGTCTTGCAA 60.818 55.000 0.00 0.00 39.05 4.08
2337 3299 0.110486 AGGTTGTCCGGTCTTGCAAT 59.890 50.000 0.00 0.00 39.05 3.56
2338 3300 0.240945 GGTTGTCCGGTCTTGCAATG 59.759 55.000 0.00 0.00 0.00 2.82
2339 3301 0.387239 GTTGTCCGGTCTTGCAATGC 60.387 55.000 0.00 0.00 0.00 3.56
2340 3302 1.851021 TTGTCCGGTCTTGCAATGCG 61.851 55.000 0.00 0.00 0.00 4.73
2341 3303 2.745884 TCCGGTCTTGCAATGCGG 60.746 61.111 0.00 4.36 0.00 5.69
2342 3304 3.055719 CCGGTCTTGCAATGCGGT 61.056 61.111 0.00 0.00 0.00 5.68
2343 3305 2.480555 CGGTCTTGCAATGCGGTC 59.519 61.111 0.00 0.00 0.00 4.79
2344 3306 2.034879 CGGTCTTGCAATGCGGTCT 61.035 57.895 0.00 0.00 0.00 3.85
2345 3307 1.503542 GGTCTTGCAATGCGGTCTG 59.496 57.895 0.00 0.00 0.00 3.51
2346 3308 1.237285 GGTCTTGCAATGCGGTCTGT 61.237 55.000 0.00 0.00 0.00 3.41
2347 3309 1.438651 GTCTTGCAATGCGGTCTGTA 58.561 50.000 0.00 0.00 0.00 2.74
2348 3310 1.804151 GTCTTGCAATGCGGTCTGTAA 59.196 47.619 0.00 0.00 0.00 2.41
2349 3311 2.420022 GTCTTGCAATGCGGTCTGTAAT 59.580 45.455 0.00 0.00 0.00 1.89
2350 3312 3.621268 GTCTTGCAATGCGGTCTGTAATA 59.379 43.478 0.00 0.00 0.00 0.98
2351 3313 3.871006 TCTTGCAATGCGGTCTGTAATAG 59.129 43.478 0.00 0.00 0.00 1.73
2352 3314 3.535280 TGCAATGCGGTCTGTAATAGA 57.465 42.857 0.00 0.00 0.00 1.98
2390 3352 2.327200 GCCTAAGCCGGACAGTTATT 57.673 50.000 5.05 0.00 0.00 1.40
2391 3353 2.640184 GCCTAAGCCGGACAGTTATTT 58.360 47.619 5.05 0.00 0.00 1.40
2392 3354 3.014623 GCCTAAGCCGGACAGTTATTTT 58.985 45.455 5.05 0.00 0.00 1.82
2393 3355 4.193865 GCCTAAGCCGGACAGTTATTTTA 58.806 43.478 5.05 0.00 0.00 1.52
2394 3356 4.272748 GCCTAAGCCGGACAGTTATTTTAG 59.727 45.833 5.05 0.00 0.00 1.85
2395 3357 5.425630 CCTAAGCCGGACAGTTATTTTAGT 58.574 41.667 5.05 0.00 0.00 2.24
2396 3358 5.878669 CCTAAGCCGGACAGTTATTTTAGTT 59.121 40.000 5.05 0.00 0.00 2.24
2397 3359 6.373495 CCTAAGCCGGACAGTTATTTTAGTTT 59.627 38.462 5.05 0.00 0.00 2.66
2398 3360 7.550196 CCTAAGCCGGACAGTTATTTTAGTTTA 59.450 37.037 5.05 0.00 0.00 2.01
2399 3361 6.980051 AGCCGGACAGTTATTTTAGTTTAG 57.020 37.500 5.05 0.00 0.00 1.85
2400 3362 6.470278 AGCCGGACAGTTATTTTAGTTTAGT 58.530 36.000 5.05 0.00 0.00 2.24
2401 3363 6.370718 AGCCGGACAGTTATTTTAGTTTAGTG 59.629 38.462 5.05 0.00 0.00 2.74
2402 3364 6.540205 CCGGACAGTTATTTTAGTTTAGTGC 58.460 40.000 0.00 0.00 0.00 4.40
2403 3365 6.148150 CCGGACAGTTATTTTAGTTTAGTGCA 59.852 38.462 0.00 0.00 0.00 4.57
2404 3366 7.308109 CCGGACAGTTATTTTAGTTTAGTGCAA 60.308 37.037 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
327 342 9.289782 AGCGGAAAAATATATATCAAAAGAGCT 57.710 29.630 0.00 0.00 0.00 4.09
341 356 8.024285 TCGAACATTTGTTTAGCGGAAAAATAT 58.976 29.630 0.00 0.00 38.56 1.28
342 357 7.324135 GTCGAACATTTGTTTAGCGGAAAAATA 59.676 33.333 0.00 0.00 38.56 1.40
343 358 6.143278 GTCGAACATTTGTTTAGCGGAAAAAT 59.857 34.615 0.00 0.00 38.56 1.82
483 505 2.091333 AGCCTCTTTTTGAAGTTGGGGA 60.091 45.455 0.00 0.00 0.00 4.81
726 750 6.128553 GCATCGTTCTCAATGTTCAAACTCTA 60.129 38.462 0.00 0.00 0.00 2.43
765 789 5.702065 TTACCCAAGTTATATGACCAGCA 57.298 39.130 0.00 0.00 0.00 4.41
793 817 6.644248 AAGGTTTGGTTCTGGTACATTAAC 57.356 37.500 0.00 0.00 38.20 2.01
794 818 8.943594 ATAAAGGTTTGGTTCTGGTACATTAA 57.056 30.769 0.00 0.00 38.20 1.40
1076 1841 7.025963 CCTGTTCTTTTCTTCATTGAGCATAC 58.974 38.462 0.00 0.00 0.00 2.39
1091 1856 6.710744 ACATACGATGTTCTTCCTGTTCTTTT 59.289 34.615 0.00 0.00 41.63 2.27
1207 1972 8.807667 ATACAAAAATGCTTCTTGAAACTGAG 57.192 30.769 2.52 0.00 0.00 3.35
1285 2076 8.239998 CAGGAGGTGAAGAAAAGAAATTACATC 58.760 37.037 0.00 0.00 0.00 3.06
1490 2442 9.163899 TGGCACATATGTTCGTTATTACTTTTA 57.836 29.630 5.37 0.00 0.00 1.52
1663 2619 5.330233 TCAAGTGTAGGAACTATCTGGTCA 58.670 41.667 0.00 0.00 45.60 4.02
1686 2646 5.439721 TCTGATTCATCGATGGACCATTTT 58.560 37.500 24.61 0.00 0.00 1.82
1986 2948 0.962855 GAGCCCTTTTCAGGTCAGCC 60.963 60.000 0.00 0.00 38.79 4.85
1987 2949 0.037447 AGAGCCCTTTTCAGGTCAGC 59.963 55.000 0.00 0.00 38.79 4.26
1988 2950 2.157738 CAAGAGCCCTTTTCAGGTCAG 58.842 52.381 0.00 0.00 38.79 3.51
1989 2951 1.774254 TCAAGAGCCCTTTTCAGGTCA 59.226 47.619 0.00 0.00 38.79 4.02
1990 2952 2.568623 TCAAGAGCCCTTTTCAGGTC 57.431 50.000 0.00 0.00 38.79 3.85
1991 2953 2.800250 CATCAAGAGCCCTTTTCAGGT 58.200 47.619 0.00 0.00 38.79 4.00
1992 2954 1.475682 GCATCAAGAGCCCTTTTCAGG 59.524 52.381 0.00 0.00 40.45 3.86
1993 2955 1.131883 CGCATCAAGAGCCCTTTTCAG 59.868 52.381 0.00 0.00 0.00 3.02
1994 2956 1.167851 CGCATCAAGAGCCCTTTTCA 58.832 50.000 0.00 0.00 0.00 2.69
1995 2957 0.453390 CCGCATCAAGAGCCCTTTTC 59.547 55.000 0.00 0.00 0.00 2.29
1996 2958 1.598701 GCCGCATCAAGAGCCCTTTT 61.599 55.000 0.00 0.00 0.00 2.27
1997 2959 2.048603 GCCGCATCAAGAGCCCTTT 61.049 57.895 0.00 0.00 0.00 3.11
1998 2960 2.439156 GCCGCATCAAGAGCCCTT 60.439 61.111 0.00 0.00 0.00 3.95
1999 2961 4.496336 GGCCGCATCAAGAGCCCT 62.496 66.667 0.00 0.00 39.60 5.19
2000 2962 4.802051 TGGCCGCATCAAGAGCCC 62.802 66.667 0.00 0.00 45.14 5.19
2001 2963 2.751436 TTGGCCGCATCAAGAGCC 60.751 61.111 0.00 0.00 45.96 4.70
2002 2964 2.768492 CCTTGGCCGCATCAAGAGC 61.768 63.158 10.07 0.00 42.94 4.09
2003 2965 1.078214 TCCTTGGCCGCATCAAGAG 60.078 57.895 10.07 2.69 42.94 2.85
2004 2966 1.078214 CTCCTTGGCCGCATCAAGA 60.078 57.895 10.07 0.00 42.94 3.02
2005 2967 1.078214 TCTCCTTGGCCGCATCAAG 60.078 57.895 0.00 0.00 40.75 3.02
2006 2968 1.377202 GTCTCCTTGGCCGCATCAA 60.377 57.895 0.00 0.00 0.00 2.57
2007 2969 2.268920 GTCTCCTTGGCCGCATCA 59.731 61.111 0.00 0.00 0.00 3.07
2008 2970 2.892425 CGTCTCCTTGGCCGCATC 60.892 66.667 0.00 0.00 0.00 3.91
2013 2975 3.119096 GAACGCGTCTCCTTGGCC 61.119 66.667 14.44 0.00 0.00 5.36
2014 2976 3.119096 GGAACGCGTCTCCTTGGC 61.119 66.667 24.19 6.21 0.00 4.52
2015 2977 1.291877 CTTGGAACGCGTCTCCTTGG 61.292 60.000 28.33 18.91 33.77 3.61
2016 2978 0.319555 TCTTGGAACGCGTCTCCTTG 60.320 55.000 28.33 22.54 33.77 3.61
2017 2979 0.608640 ATCTTGGAACGCGTCTCCTT 59.391 50.000 28.33 10.51 33.77 3.36
2018 2980 0.608640 AATCTTGGAACGCGTCTCCT 59.391 50.000 28.33 10.86 33.77 3.69
2019 2981 2.194271 CTAATCTTGGAACGCGTCTCC 58.806 52.381 24.51 24.51 0.00 3.71
2020 2982 2.194271 CCTAATCTTGGAACGCGTCTC 58.806 52.381 14.44 12.49 0.00 3.36
2021 2983 1.134788 CCCTAATCTTGGAACGCGTCT 60.135 52.381 14.44 2.25 0.00 4.18
2022 2984 1.134907 TCCCTAATCTTGGAACGCGTC 60.135 52.381 14.44 6.14 0.00 5.19
2023 2985 0.899720 TCCCTAATCTTGGAACGCGT 59.100 50.000 5.58 5.58 0.00 6.01
2024 2986 1.867233 CATCCCTAATCTTGGAACGCG 59.133 52.381 3.53 3.53 33.54 6.01
2025 2987 1.604278 GCATCCCTAATCTTGGAACGC 59.396 52.381 0.00 0.00 33.54 4.84
2026 2988 1.867233 CGCATCCCTAATCTTGGAACG 59.133 52.381 0.00 0.00 33.54 3.95
2027 2989 1.604278 GCGCATCCCTAATCTTGGAAC 59.396 52.381 0.30 0.00 33.54 3.62
2028 2990 1.810031 CGCGCATCCCTAATCTTGGAA 60.810 52.381 8.75 0.00 33.54 3.53
2029 2991 0.249868 CGCGCATCCCTAATCTTGGA 60.250 55.000 8.75 0.00 34.54 3.53
2030 2992 1.230635 CCGCGCATCCCTAATCTTGG 61.231 60.000 8.75 0.00 0.00 3.61
2031 2993 1.230635 CCCGCGCATCCCTAATCTTG 61.231 60.000 8.75 0.00 0.00 3.02
2032 2994 1.071471 CCCGCGCATCCCTAATCTT 59.929 57.895 8.75 0.00 0.00 2.40
2033 2995 1.821061 CTCCCGCGCATCCCTAATCT 61.821 60.000 8.75 0.00 0.00 2.40
2034 2996 1.374758 CTCCCGCGCATCCCTAATC 60.375 63.158 8.75 0.00 0.00 1.75
2035 2997 2.743718 CTCCCGCGCATCCCTAAT 59.256 61.111 8.75 0.00 0.00 1.73
2036 2998 3.546543 CCTCCCGCGCATCCCTAA 61.547 66.667 8.75 0.00 0.00 2.69
2037 2999 4.533124 TCCTCCCGCGCATCCCTA 62.533 66.667 8.75 0.00 0.00 3.53
2041 3003 4.537433 AAGCTCCTCCCGCGCATC 62.537 66.667 8.75 0.00 0.00 3.91
2042 3004 4.537433 GAAGCTCCTCCCGCGCAT 62.537 66.667 8.75 0.00 0.00 4.73
2045 3007 4.856607 GTCGAAGCTCCTCCCGCG 62.857 72.222 0.00 0.00 0.00 6.46
2046 3008 3.708220 CTGTCGAAGCTCCTCCCGC 62.708 68.421 0.00 0.00 0.00 6.13
2047 3009 2.492090 CTGTCGAAGCTCCTCCCG 59.508 66.667 0.00 0.00 0.00 5.14
2048 3010 2.896443 CCTGTCGAAGCTCCTCCC 59.104 66.667 0.00 0.00 0.00 4.30
2049 3011 2.185608 GCCTGTCGAAGCTCCTCC 59.814 66.667 0.00 0.00 0.00 4.30
2050 3012 2.185608 GGCCTGTCGAAGCTCCTC 59.814 66.667 0.00 0.00 0.00 3.71
2051 3013 3.764466 CGGCCTGTCGAAGCTCCT 61.764 66.667 0.00 0.00 0.00 3.69
2052 3014 4.821589 CCGGCCTGTCGAAGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
2053 3015 4.821589 CCCGGCCTGTCGAAGCTC 62.822 72.222 0.00 0.00 0.00 4.09
2056 3018 2.536997 ATTTCCCCGGCCTGTCGAAG 62.537 60.000 0.00 0.00 0.00 3.79
2057 3019 2.530958 GATTTCCCCGGCCTGTCGAA 62.531 60.000 0.00 0.00 0.00 3.71
2058 3020 3.006728 ATTTCCCCGGCCTGTCGA 61.007 61.111 0.00 0.00 0.00 4.20
2059 3021 2.513897 GATTTCCCCGGCCTGTCG 60.514 66.667 0.00 0.00 0.00 4.35
2060 3022 2.513897 CGATTTCCCCGGCCTGTC 60.514 66.667 0.00 0.00 0.00 3.51
2061 3023 4.796495 GCGATTTCCCCGGCCTGT 62.796 66.667 0.00 0.00 0.00 4.00
2065 3027 4.832608 AGACGCGATTTCCCCGGC 62.833 66.667 15.93 0.00 0.00 6.13
2066 3028 2.890474 CAGACGCGATTTCCCCGG 60.890 66.667 15.93 0.00 0.00 5.73
2067 3029 3.564027 GCAGACGCGATTTCCCCG 61.564 66.667 15.93 0.00 0.00 5.73
2068 3030 1.582610 TTTGCAGACGCGATTTCCCC 61.583 55.000 15.93 0.00 42.97 4.81
2069 3031 0.239879 TTTTGCAGACGCGATTTCCC 59.760 50.000 15.93 0.00 42.97 3.97
2070 3032 1.069227 AGTTTTGCAGACGCGATTTCC 60.069 47.619 15.93 0.00 42.97 3.13
2071 3033 2.096218 AGAGTTTTGCAGACGCGATTTC 60.096 45.455 15.93 0.00 42.97 2.17
2072 3034 1.873591 AGAGTTTTGCAGACGCGATTT 59.126 42.857 15.93 0.00 42.97 2.17
2073 3035 1.512926 AGAGTTTTGCAGACGCGATT 58.487 45.000 15.93 0.00 42.97 3.34
2074 3036 1.512926 AAGAGTTTTGCAGACGCGAT 58.487 45.000 15.93 0.00 42.97 4.58
2075 3037 2.143008 TAAGAGTTTTGCAGACGCGA 57.857 45.000 15.93 0.00 42.97 5.87
2076 3038 3.455619 AATAAGAGTTTTGCAGACGCG 57.544 42.857 3.53 3.53 42.97 6.01
2077 3039 4.537015 ACAAATAAGAGTTTTGCAGACGC 58.463 39.130 0.00 0.00 37.54 5.19
2078 3040 5.108254 GCAACAAATAAGAGTTTTGCAGACG 60.108 40.000 0.00 0.00 37.54 4.18
2079 3041 5.108254 CGCAACAAATAAGAGTTTTGCAGAC 60.108 40.000 5.11 0.00 37.54 3.51
2080 3042 4.975502 CGCAACAAATAAGAGTTTTGCAGA 59.024 37.500 5.11 0.00 37.54 4.26
2081 3043 4.148696 CCGCAACAAATAAGAGTTTTGCAG 59.851 41.667 5.11 0.00 37.54 4.41
2082 3044 4.047822 CCGCAACAAATAAGAGTTTTGCA 58.952 39.130 5.11 0.00 37.54 4.08
2083 3045 4.295051 TCCGCAACAAATAAGAGTTTTGC 58.705 39.130 0.00 0.00 37.54 3.68
2084 3046 6.148948 TCATCCGCAACAAATAAGAGTTTTG 58.851 36.000 0.00 0.00 39.43 2.44
2085 3047 6.325919 TCATCCGCAACAAATAAGAGTTTT 57.674 33.333 0.00 0.00 0.00 2.43
2086 3048 5.957842 TCATCCGCAACAAATAAGAGTTT 57.042 34.783 0.00 0.00 0.00 2.66
2087 3049 5.473504 ACTTCATCCGCAACAAATAAGAGTT 59.526 36.000 0.00 0.00 0.00 3.01
2088 3050 5.003804 ACTTCATCCGCAACAAATAAGAGT 58.996 37.500 0.00 0.00 0.00 3.24
2089 3051 5.551760 ACTTCATCCGCAACAAATAAGAG 57.448 39.130 0.00 0.00 0.00 2.85
2090 3052 5.957842 AACTTCATCCGCAACAAATAAGA 57.042 34.783 0.00 0.00 0.00 2.10
2091 3053 7.406799 AAAAACTTCATCCGCAACAAATAAG 57.593 32.000 0.00 0.00 0.00 1.73
2092 3054 8.353684 TCTAAAAACTTCATCCGCAACAAATAA 58.646 29.630 0.00 0.00 0.00 1.40
2093 3055 7.877003 TCTAAAAACTTCATCCGCAACAAATA 58.123 30.769 0.00 0.00 0.00 1.40
2094 3056 6.744112 TCTAAAAACTTCATCCGCAACAAAT 58.256 32.000 0.00 0.00 0.00 2.32
2095 3057 6.137794 TCTAAAAACTTCATCCGCAACAAA 57.862 33.333 0.00 0.00 0.00 2.83
2096 3058 5.759506 TCTAAAAACTTCATCCGCAACAA 57.240 34.783 0.00 0.00 0.00 2.83
2097 3059 5.106317 GGATCTAAAAACTTCATCCGCAACA 60.106 40.000 0.00 0.00 0.00 3.33
2098 3060 5.332707 GGATCTAAAAACTTCATCCGCAAC 58.667 41.667 0.00 0.00 0.00 4.17
2099 3061 4.094294 CGGATCTAAAAACTTCATCCGCAA 59.906 41.667 5.77 0.00 46.88 4.85
2100 3062 3.621268 CGGATCTAAAAACTTCATCCGCA 59.379 43.478 5.77 0.00 46.88 5.69
2101 3063 4.197107 CGGATCTAAAAACTTCATCCGC 57.803 45.455 5.77 0.00 46.88 5.54
2103 3065 6.986904 ACTTCGGATCTAAAAACTTCATCC 57.013 37.500 0.00 0.00 0.00 3.51
2104 3066 7.610509 CGTACTTCGGATCTAAAAACTTCATC 58.389 38.462 0.00 0.00 35.71 2.92
2105 3067 6.035758 GCGTACTTCGGATCTAAAAACTTCAT 59.964 38.462 0.00 0.00 40.26 2.57
2106 3068 5.346822 GCGTACTTCGGATCTAAAAACTTCA 59.653 40.000 0.00 0.00 40.26 3.02
2107 3069 5.575995 AGCGTACTTCGGATCTAAAAACTTC 59.424 40.000 0.00 0.00 40.26 3.01
2108 3070 5.476614 AGCGTACTTCGGATCTAAAAACTT 58.523 37.500 0.00 0.00 40.26 2.66
2109 3071 5.069501 AGCGTACTTCGGATCTAAAAACT 57.930 39.130 0.00 0.00 40.26 2.66
2110 3072 4.267214 GGAGCGTACTTCGGATCTAAAAAC 59.733 45.833 0.00 0.00 40.26 2.43
2111 3073 4.159135 AGGAGCGTACTTCGGATCTAAAAA 59.841 41.667 0.00 0.00 40.26 1.94
2112 3074 3.698040 AGGAGCGTACTTCGGATCTAAAA 59.302 43.478 0.00 0.00 40.26 1.52
2113 3075 3.285484 AGGAGCGTACTTCGGATCTAAA 58.715 45.455 0.00 0.00 40.26 1.85
2114 3076 2.928334 AGGAGCGTACTTCGGATCTAA 58.072 47.619 0.00 0.00 40.26 2.10
2115 3077 2.634815 AGGAGCGTACTTCGGATCTA 57.365 50.000 0.00 0.00 40.26 1.98
2116 3078 2.634815 TAGGAGCGTACTTCGGATCT 57.365 50.000 0.00 0.00 40.26 2.75
2117 3079 2.095161 CCATAGGAGCGTACTTCGGATC 60.095 54.545 0.00 0.00 40.26 3.36
2118 3080 1.887198 CCATAGGAGCGTACTTCGGAT 59.113 52.381 0.00 0.00 40.26 4.18
2119 3081 1.134007 TCCATAGGAGCGTACTTCGGA 60.134 52.381 0.00 0.00 40.26 4.55
2120 3082 1.315690 TCCATAGGAGCGTACTTCGG 58.684 55.000 0.00 0.00 40.26 4.30
2121 3083 3.204597 GATCCATAGGAGCGTACTTCG 57.795 52.381 0.00 0.00 34.05 3.79
2129 3091 0.387878 CAGCGTCGATCCATAGGAGC 60.388 60.000 0.00 0.00 34.05 4.70
2130 3092 0.242286 CCAGCGTCGATCCATAGGAG 59.758 60.000 0.00 0.00 34.05 3.69
2131 3093 0.179001 TCCAGCGTCGATCCATAGGA 60.179 55.000 0.00 0.00 35.55 2.94
2132 3094 0.242286 CTCCAGCGTCGATCCATAGG 59.758 60.000 0.00 0.00 0.00 2.57
2133 3095 0.955178 ACTCCAGCGTCGATCCATAG 59.045 55.000 0.00 0.00 0.00 2.23
2134 3096 0.952280 GACTCCAGCGTCGATCCATA 59.048 55.000 0.00 0.00 0.00 2.74
2135 3097 1.736586 GACTCCAGCGTCGATCCAT 59.263 57.895 0.00 0.00 0.00 3.41
2136 3098 2.415608 GGACTCCAGCGTCGATCCA 61.416 63.158 0.00 0.00 34.75 3.41
2137 3099 0.818445 TAGGACTCCAGCGTCGATCC 60.818 60.000 0.00 0.00 34.75 3.36
2138 3100 0.308376 GTAGGACTCCAGCGTCGATC 59.692 60.000 0.00 0.00 34.75 3.69
2139 3101 0.393944 TGTAGGACTCCAGCGTCGAT 60.394 55.000 0.00 0.00 34.75 3.59
2140 3102 1.002990 TGTAGGACTCCAGCGTCGA 60.003 57.895 0.00 0.00 34.75 4.20
2141 3103 1.025113 TCTGTAGGACTCCAGCGTCG 61.025 60.000 0.00 0.00 34.75 5.12
2142 3104 0.452585 GTCTGTAGGACTCCAGCGTC 59.547 60.000 0.00 0.00 41.46 5.19
2143 3105 1.306642 CGTCTGTAGGACTCCAGCGT 61.307 60.000 0.00 0.00 42.44 5.07
2144 3106 1.429825 CGTCTGTAGGACTCCAGCG 59.570 63.158 0.00 0.00 42.44 5.18
2145 3107 1.139947 GCGTCTGTAGGACTCCAGC 59.860 63.158 0.00 0.00 42.44 4.85
2146 3108 1.810532 GGCGTCTGTAGGACTCCAG 59.189 63.158 0.00 0.00 46.10 3.86
2147 3109 4.013702 GGCGTCTGTAGGACTCCA 57.986 61.111 0.00 0.00 46.10 3.86
2148 3110 1.609555 CATAGGCGTCTGTAGGACTCC 59.390 57.143 0.00 0.00 46.93 3.85
2149 3111 1.001158 GCATAGGCGTCTGTAGGACTC 60.001 57.143 0.00 0.00 42.44 3.36
2150 3112 1.033574 GCATAGGCGTCTGTAGGACT 58.966 55.000 0.00 0.00 42.44 3.85
2151 3113 0.744874 TGCATAGGCGTCTGTAGGAC 59.255 55.000 0.00 0.00 45.35 3.85
2152 3114 1.032794 CTGCATAGGCGTCTGTAGGA 58.967 55.000 0.00 0.00 45.35 2.94
2153 3115 1.032794 TCTGCATAGGCGTCTGTAGG 58.967 55.000 0.00 0.00 45.35 3.18
2154 3116 3.377346 AATCTGCATAGGCGTCTGTAG 57.623 47.619 0.00 3.95 45.35 2.74
2155 3117 3.457234 CAAATCTGCATAGGCGTCTGTA 58.543 45.455 0.00 0.00 45.35 2.74
2156 3118 2.283298 CAAATCTGCATAGGCGTCTGT 58.717 47.619 0.00 0.00 45.35 3.41
2157 3119 1.600957 CCAAATCTGCATAGGCGTCTG 59.399 52.381 0.00 0.00 45.35 3.51
2158 3120 1.959042 CCAAATCTGCATAGGCGTCT 58.041 50.000 0.00 0.00 45.35 4.18
2159 3121 0.308993 GCCAAATCTGCATAGGCGTC 59.691 55.000 0.00 0.00 45.35 5.19
2160 3122 2.408333 GCCAAATCTGCATAGGCGT 58.592 52.632 0.00 0.00 45.35 5.68
2162 3124 2.428171 TCTTTGCCAAATCTGCATAGGC 59.572 45.455 0.00 0.00 45.41 3.93
2163 3125 3.698040 ACTCTTTGCCAAATCTGCATAGG 59.302 43.478 0.00 0.00 38.05 2.57
2164 3126 4.978083 ACTCTTTGCCAAATCTGCATAG 57.022 40.909 0.00 0.00 38.76 2.23
2165 3127 4.332543 CGTACTCTTTGCCAAATCTGCATA 59.667 41.667 0.00 0.00 38.76 3.14
2166 3128 3.127548 CGTACTCTTTGCCAAATCTGCAT 59.872 43.478 0.00 0.00 38.76 3.96
2167 3129 2.483877 CGTACTCTTTGCCAAATCTGCA 59.516 45.455 0.00 0.00 36.84 4.41
2168 3130 2.159517 CCGTACTCTTTGCCAAATCTGC 60.160 50.000 0.00 0.00 0.00 4.26
2169 3131 2.159517 GCCGTACTCTTTGCCAAATCTG 60.160 50.000 0.00 0.00 0.00 2.90
2170 3132 2.084546 GCCGTACTCTTTGCCAAATCT 58.915 47.619 0.00 0.00 0.00 2.40
2171 3133 2.084546 AGCCGTACTCTTTGCCAAATC 58.915 47.619 0.00 0.00 0.00 2.17
2172 3134 1.812571 CAGCCGTACTCTTTGCCAAAT 59.187 47.619 0.00 0.00 0.00 2.32
2173 3135 1.202710 TCAGCCGTACTCTTTGCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
2174 3136 0.394938 TCAGCCGTACTCTTTGCCAA 59.605 50.000 0.00 0.00 0.00 4.52
2175 3137 0.613260 ATCAGCCGTACTCTTTGCCA 59.387 50.000 0.00 0.00 0.00 4.92
2176 3138 1.009829 CATCAGCCGTACTCTTTGCC 58.990 55.000 0.00 0.00 0.00 4.52
2177 3139 0.375106 GCATCAGCCGTACTCTTTGC 59.625 55.000 0.00 0.00 33.58 3.68
2178 3140 1.662629 CTGCATCAGCCGTACTCTTTG 59.337 52.381 0.00 0.00 41.13 2.77
2179 3141 2.015736 CTGCATCAGCCGTACTCTTT 57.984 50.000 0.00 0.00 41.13 2.52
2180 3142 3.748863 CTGCATCAGCCGTACTCTT 57.251 52.632 0.00 0.00 41.13 2.85
2190 3152 2.030893 TCGAAAAACTTGGCTGCATCAG 60.031 45.455 0.50 0.00 34.12 2.90
2191 3153 1.952990 TCGAAAAACTTGGCTGCATCA 59.047 42.857 0.50 0.00 0.00 3.07
2192 3154 2.589014 CTCGAAAAACTTGGCTGCATC 58.411 47.619 0.50 0.00 0.00 3.91
2193 3155 1.270550 CCTCGAAAAACTTGGCTGCAT 59.729 47.619 0.50 0.00 0.00 3.96
2194 3156 0.667993 CCTCGAAAAACTTGGCTGCA 59.332 50.000 0.50 0.00 0.00 4.41
2195 3157 0.951558 TCCTCGAAAAACTTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
2196 3158 2.813754 TGATCCTCGAAAAACTTGGCTG 59.186 45.455 0.00 0.00 0.00 4.85
2197 3159 3.140325 TGATCCTCGAAAAACTTGGCT 57.860 42.857 0.00 0.00 0.00 4.75
2198 3160 3.915437 TTGATCCTCGAAAAACTTGGC 57.085 42.857 0.00 0.00 0.00 4.52
2199 3161 6.503524 TCTTTTTGATCCTCGAAAAACTTGG 58.496 36.000 4.37 0.00 38.76 3.61
2200 3162 7.862372 TCATCTTTTTGATCCTCGAAAAACTTG 59.138 33.333 4.37 0.00 38.76 3.16
2201 3163 7.940850 TCATCTTTTTGATCCTCGAAAAACTT 58.059 30.769 4.37 0.00 38.76 2.66
2202 3164 7.510549 TCATCTTTTTGATCCTCGAAAAACT 57.489 32.000 4.37 0.00 38.76 2.66
2203 3165 8.023128 TCATCATCTTTTTGATCCTCGAAAAAC 58.977 33.333 4.37 0.00 38.76 2.43
2204 3166 8.109705 TCATCATCTTTTTGATCCTCGAAAAA 57.890 30.769 4.37 0.00 38.76 1.94
2205 3167 7.686438 TCATCATCTTTTTGATCCTCGAAAA 57.314 32.000 0.00 3.07 37.40 2.29
2206 3168 7.391554 ACTTCATCATCTTTTTGATCCTCGAAA 59.608 33.333 0.00 0.00 34.09 3.46
2207 3169 6.881065 ACTTCATCATCTTTTTGATCCTCGAA 59.119 34.615 0.00 0.00 34.09 3.71
2208 3170 6.314648 CACTTCATCATCTTTTTGATCCTCGA 59.685 38.462 0.00 0.00 34.09 4.04
2209 3171 6.457934 CCACTTCATCATCTTTTTGATCCTCG 60.458 42.308 0.00 0.00 34.09 4.63
2210 3172 6.600822 TCCACTTCATCATCTTTTTGATCCTC 59.399 38.462 0.00 0.00 34.09 3.71
2211 3173 6.487828 TCCACTTCATCATCTTTTTGATCCT 58.512 36.000 0.00 0.00 34.09 3.24
2212 3174 6.764308 TCCACTTCATCATCTTTTTGATCC 57.236 37.500 0.00 0.00 34.09 3.36
2213 3175 9.136952 CTTTTCCACTTCATCATCTTTTTGATC 57.863 33.333 0.00 0.00 34.09 2.92
2214 3176 7.601508 GCTTTTCCACTTCATCATCTTTTTGAT 59.398 33.333 0.00 0.00 36.79 2.57
2215 3177 6.925165 GCTTTTCCACTTCATCATCTTTTTGA 59.075 34.615 0.00 0.00 0.00 2.69
2216 3178 6.927381 AGCTTTTCCACTTCATCATCTTTTTG 59.073 34.615 0.00 0.00 0.00 2.44
2217 3179 7.059202 AGCTTTTCCACTTCATCATCTTTTT 57.941 32.000 0.00 0.00 0.00 1.94
2218 3180 6.661304 AGCTTTTCCACTTCATCATCTTTT 57.339 33.333 0.00 0.00 0.00 2.27
2219 3181 7.951347 ATAGCTTTTCCACTTCATCATCTTT 57.049 32.000 0.00 0.00 0.00 2.52
2220 3182 7.833183 AGAATAGCTTTTCCACTTCATCATCTT 59.167 33.333 12.62 0.00 0.00 2.40
2221 3183 7.282675 CAGAATAGCTTTTCCACTTCATCATCT 59.717 37.037 12.62 0.00 0.00 2.90
2222 3184 7.416022 CAGAATAGCTTTTCCACTTCATCATC 58.584 38.462 12.62 0.00 0.00 2.92
2223 3185 6.320672 CCAGAATAGCTTTTCCACTTCATCAT 59.679 38.462 12.62 0.00 0.00 2.45
2224 3186 5.649395 CCAGAATAGCTTTTCCACTTCATCA 59.351 40.000 12.62 0.00 0.00 3.07
2225 3187 5.649831 ACCAGAATAGCTTTTCCACTTCATC 59.350 40.000 12.62 0.00 0.00 2.92
2226 3188 5.574188 ACCAGAATAGCTTTTCCACTTCAT 58.426 37.500 12.62 0.00 0.00 2.57
2227 3189 4.985538 ACCAGAATAGCTTTTCCACTTCA 58.014 39.130 12.62 0.00 0.00 3.02
2228 3190 4.093556 CGACCAGAATAGCTTTTCCACTTC 59.906 45.833 12.62 4.83 0.00 3.01
2229 3191 4.003648 CGACCAGAATAGCTTTTCCACTT 58.996 43.478 12.62 0.00 0.00 3.16
2230 3192 3.600388 CGACCAGAATAGCTTTTCCACT 58.400 45.455 12.62 0.00 0.00 4.00
2231 3193 2.096013 GCGACCAGAATAGCTTTTCCAC 59.904 50.000 12.62 2.80 0.00 4.02
2232 3194 2.290008 TGCGACCAGAATAGCTTTTCCA 60.290 45.455 12.62 1.11 0.00 3.53
2233 3195 2.352960 CTGCGACCAGAATAGCTTTTCC 59.647 50.000 12.62 0.00 41.77 3.13
2234 3196 3.003480 ACTGCGACCAGAATAGCTTTTC 58.997 45.455 8.70 8.70 41.77 2.29
2235 3197 3.059352 ACTGCGACCAGAATAGCTTTT 57.941 42.857 0.00 0.00 41.77 2.27
2236 3198 2.770164 ACTGCGACCAGAATAGCTTT 57.230 45.000 0.00 0.00 41.77 3.51
2237 3199 2.028112 TGAACTGCGACCAGAATAGCTT 60.028 45.455 0.00 0.00 41.77 3.74
2238 3200 1.550524 TGAACTGCGACCAGAATAGCT 59.449 47.619 0.00 0.00 41.77 3.32
2239 3201 1.929836 CTGAACTGCGACCAGAATAGC 59.070 52.381 0.00 0.00 41.77 2.97
2240 3202 1.929836 GCTGAACTGCGACCAGAATAG 59.070 52.381 0.00 0.00 41.77 1.73
2241 3203 2.010145 GCTGAACTGCGACCAGAATA 57.990 50.000 0.00 0.00 41.77 1.75
2242 3204 2.846371 GCTGAACTGCGACCAGAAT 58.154 52.632 0.00 0.00 41.77 2.40
2243 3205 4.361253 GCTGAACTGCGACCAGAA 57.639 55.556 0.00 0.00 41.77 3.02
2251 3213 2.558313 GTTGGAGCGCTGAACTGC 59.442 61.111 18.48 0.00 0.00 4.40
2252 3214 1.956170 ACGTTGGAGCGCTGAACTG 60.956 57.895 18.48 15.22 34.88 3.16
2253 3215 1.956170 CACGTTGGAGCGCTGAACT 60.956 57.895 18.48 4.96 34.88 3.01
2254 3216 2.551270 CACGTTGGAGCGCTGAAC 59.449 61.111 18.48 16.71 34.88 3.18
2255 3217 3.345808 GCACGTTGGAGCGCTGAA 61.346 61.111 18.48 4.06 34.88 3.02
2256 3218 4.600576 TGCACGTTGGAGCGCTGA 62.601 61.111 18.48 0.00 34.88 4.26
2257 3219 4.374702 GTGCACGTTGGAGCGCTG 62.375 66.667 18.48 1.17 37.30 5.18
2258 3220 4.908687 TGTGCACGTTGGAGCGCT 62.909 61.111 11.27 11.27 40.34 5.92
2259 3221 3.254014 AATGTGCACGTTGGAGCGC 62.254 57.895 23.20 0.00 40.14 5.92
2260 3222 1.440850 CAATGTGCACGTTGGAGCG 60.441 57.895 34.46 15.84 38.77 5.03
2261 3223 1.730547 GCAATGTGCACGTTGGAGC 60.731 57.895 39.07 27.55 44.26 4.70
2262 3224 4.539152 GCAATGTGCACGTTGGAG 57.461 55.556 39.07 23.17 44.26 3.86
2271 3233 1.881973 TCTCACTCAAAGGCAATGTGC 59.118 47.619 0.00 0.00 44.08 4.57
2272 3234 2.486982 CCTCTCACTCAAAGGCAATGTG 59.513 50.000 0.00 0.00 0.00 3.21
2273 3235 2.373169 TCCTCTCACTCAAAGGCAATGT 59.627 45.455 0.00 0.00 0.00 2.71
2274 3236 3.063510 TCCTCTCACTCAAAGGCAATG 57.936 47.619 0.00 0.00 0.00 2.82
2275 3237 3.618351 CATCCTCTCACTCAAAGGCAAT 58.382 45.455 0.00 0.00 0.00 3.56
2276 3238 2.290514 CCATCCTCTCACTCAAAGGCAA 60.291 50.000 0.00 0.00 0.00 4.52
2277 3239 1.280133 CCATCCTCTCACTCAAAGGCA 59.720 52.381 0.00 0.00 0.00 4.75
2278 3240 2.016096 GCCATCCTCTCACTCAAAGGC 61.016 57.143 0.00 0.00 0.00 4.35
2279 3241 1.558756 AGCCATCCTCTCACTCAAAGG 59.441 52.381 0.00 0.00 0.00 3.11
2280 3242 2.630158 CAGCCATCCTCTCACTCAAAG 58.370 52.381 0.00 0.00 0.00 2.77
2281 3243 1.339438 GCAGCCATCCTCTCACTCAAA 60.339 52.381 0.00 0.00 0.00 2.69
2282 3244 0.251354 GCAGCCATCCTCTCACTCAA 59.749 55.000 0.00 0.00 0.00 3.02
2283 3245 0.616964 AGCAGCCATCCTCTCACTCA 60.617 55.000 0.00 0.00 0.00 3.41
2284 3246 1.407936 TAGCAGCCATCCTCTCACTC 58.592 55.000 0.00 0.00 0.00 3.51
2285 3247 1.693062 CATAGCAGCCATCCTCTCACT 59.307 52.381 0.00 0.00 0.00 3.41
2286 3248 1.270732 CCATAGCAGCCATCCTCTCAC 60.271 57.143 0.00 0.00 0.00 3.51
2287 3249 1.054231 CCATAGCAGCCATCCTCTCA 58.946 55.000 0.00 0.00 0.00 3.27
2288 3250 0.321475 GCCATAGCAGCCATCCTCTC 60.321 60.000 0.00 0.00 39.53 3.20
2289 3251 1.759881 GCCATAGCAGCCATCCTCT 59.240 57.895 0.00 0.00 39.53 3.69
2290 3252 4.393693 GCCATAGCAGCCATCCTC 57.606 61.111 0.00 0.00 39.53 3.71
2297 3259 2.664518 GAGCTCGGCCATAGCAGC 60.665 66.667 24.73 14.55 42.62 5.25
2298 3260 2.030262 GGAGCTCGGCCATAGCAG 59.970 66.667 24.73 4.36 42.62 4.24
2299 3261 2.763710 TGGAGCTCGGCCATAGCA 60.764 61.111 24.73 5.80 42.62 3.49
2300 3262 2.280457 GTGGAGCTCGGCCATAGC 60.280 66.667 17.43 17.43 37.81 2.97
2301 3263 1.068753 CTGTGGAGCTCGGCCATAG 59.931 63.158 7.83 4.96 38.11 2.23
2302 3264 2.434843 CCTGTGGAGCTCGGCCATA 61.435 63.158 7.83 0.00 37.81 2.74
2303 3265 3.790437 CCTGTGGAGCTCGGCCAT 61.790 66.667 7.83 0.00 37.81 4.40
2305 3267 4.021925 AACCTGTGGAGCTCGGCC 62.022 66.667 7.83 0.00 0.00 6.13
2306 3268 2.743928 CAACCTGTGGAGCTCGGC 60.744 66.667 7.83 3.32 0.00 5.54
2307 3269 1.374758 GACAACCTGTGGAGCTCGG 60.375 63.158 7.83 5.70 0.00 4.63
2308 3270 1.374758 GGACAACCTGTGGAGCTCG 60.375 63.158 7.83 0.00 0.00 5.03
2309 3271 1.374758 CGGACAACCTGTGGAGCTC 60.375 63.158 4.71 4.71 0.00 4.09
2310 3272 2.743718 CGGACAACCTGTGGAGCT 59.256 61.111 0.00 0.00 0.00 4.09
2311 3273 2.358737 CCGGACAACCTGTGGAGC 60.359 66.667 0.00 0.00 0.00 4.70
2312 3274 1.004918 GACCGGACAACCTGTGGAG 60.005 63.158 9.46 0.00 33.89 3.86
2313 3275 1.052124 AAGACCGGACAACCTGTGGA 61.052 55.000 9.46 0.00 33.89 4.02
2314 3276 0.884704 CAAGACCGGACAACCTGTGG 60.885 60.000 9.46 0.00 33.89 4.17
2315 3277 1.507141 GCAAGACCGGACAACCTGTG 61.507 60.000 9.46 0.00 33.89 3.66
2316 3278 1.227853 GCAAGACCGGACAACCTGT 60.228 57.895 9.46 0.00 36.36 4.00
2317 3279 0.817634 TTGCAAGACCGGACAACCTG 60.818 55.000 9.46 0.00 0.00 4.00
2318 3280 0.110486 ATTGCAAGACCGGACAACCT 59.890 50.000 9.46 0.00 0.00 3.50
2319 3281 0.240945 CATTGCAAGACCGGACAACC 59.759 55.000 9.46 0.00 0.00 3.77
2320 3282 0.387239 GCATTGCAAGACCGGACAAC 60.387 55.000 9.46 0.00 0.00 3.32
2321 3283 1.851021 CGCATTGCAAGACCGGACAA 61.851 55.000 9.46 4.69 0.00 3.18
2322 3284 2.324330 CGCATTGCAAGACCGGACA 61.324 57.895 9.46 0.00 0.00 4.02
2323 3285 2.480555 CGCATTGCAAGACCGGAC 59.519 61.111 9.46 0.10 0.00 4.79
2324 3286 2.745884 CCGCATTGCAAGACCGGA 60.746 61.111 23.08 0.00 41.34 5.14
2325 3287 3.039202 GACCGCATTGCAAGACCGG 62.039 63.158 24.72 24.72 44.19 5.28
2326 3288 2.034879 AGACCGCATTGCAAGACCG 61.035 57.895 9.69 7.22 0.00 4.79
2327 3289 1.237285 ACAGACCGCATTGCAAGACC 61.237 55.000 9.69 0.00 0.00 3.85
2328 3290 1.438651 TACAGACCGCATTGCAAGAC 58.561 50.000 9.69 0.00 0.00 3.01
2329 3291 2.177394 TTACAGACCGCATTGCAAGA 57.823 45.000 9.69 0.00 0.00 3.02
2330 3292 3.871006 TCTATTACAGACCGCATTGCAAG 59.129 43.478 9.69 1.67 0.00 4.01
2331 3293 3.621268 GTCTATTACAGACCGCATTGCAA 59.379 43.478 9.69 0.00 46.94 4.08
2332 3294 3.194861 GTCTATTACAGACCGCATTGCA 58.805 45.455 9.69 0.00 46.94 4.08
2333 3295 3.861569 GTCTATTACAGACCGCATTGC 57.138 47.619 0.00 0.00 46.94 3.56
2371 3333 2.327200 AATAACTGTCCGGCTTAGGC 57.673 50.000 0.00 0.00 37.82 3.93
2372 3334 5.425630 ACTAAAATAACTGTCCGGCTTAGG 58.574 41.667 0.00 0.00 0.00 2.69
2373 3335 6.980051 AACTAAAATAACTGTCCGGCTTAG 57.020 37.500 0.00 0.00 0.00 2.18
2374 3336 8.096414 ACTAAACTAAAATAACTGTCCGGCTTA 58.904 33.333 0.00 0.00 0.00 3.09
2375 3337 6.938596 ACTAAACTAAAATAACTGTCCGGCTT 59.061 34.615 0.00 0.00 0.00 4.35
2376 3338 6.370718 CACTAAACTAAAATAACTGTCCGGCT 59.629 38.462 0.00 0.00 0.00 5.52
2377 3339 6.540205 CACTAAACTAAAATAACTGTCCGGC 58.460 40.000 0.00 0.00 0.00 6.13
2378 3340 6.148150 TGCACTAAACTAAAATAACTGTCCGG 59.852 38.462 0.00 0.00 0.00 5.14
2379 3341 7.124347 TGCACTAAACTAAAATAACTGTCCG 57.876 36.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.