Multiple sequence alignment - TraesCS4B01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G087400 chr4B 100.000 5603 0 0 1 5603 87694171 87688569 0.000000e+00 10347
1 TraesCS4B01G087400 chr4B 94.048 84 4 1 1744 1827 87692346 87692264 5.890000e-25 126
2 TraesCS4B01G087400 chr4B 94.048 84 4 1 1826 1908 87692428 87692345 5.890000e-25 126
3 TraesCS4B01G087400 chr4A 93.036 5299 198 71 394 5603 537529770 537534986 0.000000e+00 7583
4 TraesCS4B01G087400 chr4A 84.928 345 22 15 4995 5325 537538399 537538727 7.000000e-84 322
5 TraesCS4B01G087400 chr4A 90.870 230 11 4 144 365 537529562 537529789 3.280000e-77 300
6 TraesCS4B01G087400 chr4A 82.927 287 31 14 5319 5602 537538787 537539058 5.610000e-60 243
7 TraesCS4B01G087400 chr4A 94.048 84 4 1 1826 1908 537531145 537531228 5.890000e-25 126
8 TraesCS4B01G087400 chr4A 94.048 84 4 1 1744 1827 537531227 537531309 5.890000e-25 126
9 TraesCS4B01G087400 chr4A 95.775 71 3 0 4925 4995 537538294 537538364 1.280000e-21 115
10 TraesCS4B01G087400 chr4D 92.972 5279 187 73 394 5579 58280621 58275434 0.000000e+00 7524
11 TraesCS4B01G087400 chr4D 86.863 373 25 11 4 365 58280961 58280602 4.070000e-106 396
12 TraesCS4B01G087400 chr4D 89.017 173 13 4 5117 5285 58273024 58272854 5.690000e-50 209
13 TraesCS4B01G087400 chr4D 96.429 84 2 1 1744 1827 58279166 58279084 2.720000e-28 137
14 TraesCS4B01G087400 chr4D 94.048 84 4 1 1826 1908 58279248 58279165 5.890000e-25 126
15 TraesCS4B01G087400 chr4D 95.775 71 3 0 4925 4995 58273217 58273147 1.280000e-21 115
16 TraesCS4B01G087400 chr2D 91.637 1411 96 11 1211 2620 360699078 360700467 0.000000e+00 1932
17 TraesCS4B01G087400 chr2D 89.991 1119 72 19 2905 3999 360700461 360701563 0.000000e+00 1410


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G087400 chr4B 87688569 87694171 5602 True 3533.000000 10347 96.032000 1 5603 3 chr4B.!!$R1 5602
1 TraesCS4B01G087400 chr4A 537529562 537534986 5424 False 2033.750000 7583 93.000500 144 5603 4 chr4A.!!$F1 5459
2 TraesCS4B01G087400 chr4A 537538294 537539058 764 False 226.666667 322 87.876667 4925 5602 3 chr4A.!!$F2 677
3 TraesCS4B01G087400 chr4D 58272854 58280961 8107 True 1417.833333 7524 92.517333 4 5579 6 chr4D.!!$R1 5575
4 TraesCS4B01G087400 chr2D 360699078 360701563 2485 False 1671.000000 1932 90.814000 1211 3999 2 chr2D.!!$F1 2788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.307760 CGCAACGAGCTCAAAACCTT 59.692 50.000 15.40 0.00 42.61 3.50 F
168 177 0.455972 CAGCAAAATTACCCCGTGCG 60.456 55.000 0.00 0.00 40.17 5.34 F
380 396 0.462937 CGAGGCGAGGAGAGAGAGAA 60.463 60.000 0.00 0.00 0.00 2.87 F
519 555 0.733909 CGTTCATCAGCAGCTCGTCA 60.734 55.000 0.00 0.00 0.00 4.35 F
923 964 0.767375 TGGCCTCAGCTGTTTCTTCT 59.233 50.000 14.67 0.00 39.73 2.85 F
1170 1224 0.980423 AGAACCTGAAGCTGGAGGAC 59.020 55.000 16.51 10.32 33.16 3.85 F
1632 1686 1.196808 GGTGCGAATGATTTCACACGT 59.803 47.619 11.61 0.00 42.97 4.49 F
1982 2039 2.636830 CATGAACGCCTCCAAGAATCT 58.363 47.619 0.00 0.00 0.00 2.40 F
2925 2997 0.176680 CGTGCTTACCTGAGCCTCAT 59.823 55.000 0.00 0.00 42.01 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 1474 0.600255 AACAACCGGTTGAGCTCGAG 60.600 55.000 45.25 22.57 42.93 4.04 R
1493 1547 0.743701 GAGTCCCTGTGCATCAGCTG 60.744 60.000 7.63 7.63 42.38 4.24 R
2297 2354 0.250553 CGCCACCCTCTACCAACAAA 60.251 55.000 0.00 0.00 0.00 2.83 R
2498 2561 4.067896 CCTGAAGTAAGATGCACAACTGT 58.932 43.478 0.00 0.00 0.00 3.55 R
2539 2602 0.242825 GACTACTGTGTGCGCCTACA 59.757 55.000 4.18 9.44 0.00 2.74 R
2540 2603 0.458025 GGACTACTGTGTGCGCCTAC 60.458 60.000 4.18 4.29 0.00 3.18 R
2544 2607 0.673644 AATGGGACTACTGTGTGCGC 60.674 55.000 0.00 0.00 0.00 6.09 R
3128 3212 1.890489 TGTCTCCGTTTGTGCTAGCTA 59.110 47.619 17.23 1.87 0.00 3.32 R
4852 4956 0.026674 CGCACAAGACACACACACAG 59.973 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.002087 AGGTGGTCGAAGCGAGAAATT 59.998 47.619 0.00 0.00 36.23 1.82
23 24 0.796312 TGGTCGAAGCGAGAAATTGC 59.204 50.000 0.00 0.00 36.23 3.56
27 28 1.999735 TCGAAGCGAGAAATTGCGATT 59.000 42.857 0.00 0.00 38.96 3.34
39 40 6.032094 AGAAATTGCGATTCATCATCACAAC 58.968 36.000 0.00 0.00 36.88 3.32
45 46 5.097529 GCGATTCATCATCACAACAAACAT 58.902 37.500 0.00 0.00 0.00 2.71
58 59 3.883830 ACAAACATGCCTTTCAACACA 57.116 38.095 0.00 0.00 0.00 3.72
59 60 4.199432 ACAAACATGCCTTTCAACACAA 57.801 36.364 0.00 0.00 0.00 3.33
87 88 0.307760 CGCAACGAGCTCAAAACCTT 59.692 50.000 15.40 0.00 42.61 3.50
88 89 1.268539 CGCAACGAGCTCAAAACCTTT 60.269 47.619 15.40 0.00 42.61 3.11
89 90 2.119457 GCAACGAGCTCAAAACCTTTG 58.881 47.619 15.40 5.88 41.15 2.77
97 98 1.413812 CTCAAAACCTTTGGCCAAGCT 59.586 47.619 19.48 1.80 0.00 3.74
136 137 1.434188 AAGGGTCACATGTCAGTGGA 58.566 50.000 0.00 0.00 39.93 4.02
137 138 0.687354 AGGGTCACATGTCAGTGGAC 59.313 55.000 0.00 0.00 44.57 4.02
168 177 0.455972 CAGCAAAATTACCCCGTGCG 60.456 55.000 0.00 0.00 40.17 5.34
169 178 0.891904 AGCAAAATTACCCCGTGCGT 60.892 50.000 0.00 0.00 40.17 5.24
170 179 0.803740 GCAAAATTACCCCGTGCGTA 59.196 50.000 0.00 0.00 0.00 4.42
171 180 1.202098 GCAAAATTACCCCGTGCGTAG 60.202 52.381 0.00 0.00 0.00 3.51
244 260 6.806249 ACCATGTTTCAATAATGCGTAAAGTG 59.194 34.615 0.00 0.00 0.00 3.16
245 261 6.253298 CCATGTTTCAATAATGCGTAAAGTGG 59.747 38.462 0.00 0.00 0.00 4.00
270 286 2.275380 CCCCGCTTTTCAGTTGGGG 61.275 63.158 0.00 0.00 46.02 4.96
274 290 1.138069 CCGCTTTTCAGTTGGGGTTTT 59.862 47.619 0.00 0.00 0.00 2.43
300 316 9.863845 TCCCTTTTTAAAAGATTTAAATAGCCG 57.136 29.630 17.91 9.93 0.00 5.52
313 329 3.982372 TAGCCGAGAAACGCAGCGG 62.982 63.158 21.15 0.00 46.14 5.52
327 343 4.838152 GCGGAGGCGAATCCAGCA 62.838 66.667 13.87 0.00 39.53 4.41
333 349 2.742116 GGCGAATCCAGCACCCCTA 61.742 63.158 0.00 0.00 36.08 3.53
358 374 6.909550 AAAAAGTTGCTAGAGAGAGAGAGA 57.090 37.500 0.00 0.00 0.00 3.10
359 375 6.515272 AAAAGTTGCTAGAGAGAGAGAGAG 57.485 41.667 0.00 0.00 0.00 3.20
360 376 4.156455 AGTTGCTAGAGAGAGAGAGAGG 57.844 50.000 0.00 0.00 0.00 3.69
361 377 2.618709 GTTGCTAGAGAGAGAGAGAGGC 59.381 54.545 0.00 0.00 0.00 4.70
362 378 1.202639 TGCTAGAGAGAGAGAGAGGCG 60.203 57.143 0.00 0.00 0.00 5.52
363 379 1.070134 GCTAGAGAGAGAGAGAGGCGA 59.930 57.143 0.00 0.00 0.00 5.54
364 380 2.868044 GCTAGAGAGAGAGAGAGGCGAG 60.868 59.091 0.00 0.00 0.00 5.03
365 381 0.469917 AGAGAGAGAGAGAGGCGAGG 59.530 60.000 0.00 0.00 0.00 4.63
366 382 1.152963 AGAGAGAGAGAGGCGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
367 383 2.515991 AGAGAGAGAGGCGAGGCG 60.516 66.667 0.00 0.00 0.00 5.52
368 384 2.515057 GAGAGAGAGGCGAGGCGA 60.515 66.667 0.00 0.00 0.00 5.54
369 385 2.515991 AGAGAGAGGCGAGGCGAG 60.516 66.667 0.00 0.00 0.00 5.03
370 386 3.591835 GAGAGAGGCGAGGCGAGG 61.592 72.222 0.00 0.00 0.00 4.63
371 387 4.116585 AGAGAGGCGAGGCGAGGA 62.117 66.667 0.00 0.00 0.00 3.71
372 388 3.591835 GAGAGGCGAGGCGAGGAG 61.592 72.222 0.00 0.00 0.00 3.69
373 389 4.116585 AGAGGCGAGGCGAGGAGA 62.117 66.667 0.00 0.00 0.00 3.71
374 390 3.591835 GAGGCGAGGCGAGGAGAG 61.592 72.222 0.00 0.00 0.00 3.20
375 391 4.116585 AGGCGAGGCGAGGAGAGA 62.117 66.667 0.00 0.00 0.00 3.10
376 392 3.591835 GGCGAGGCGAGGAGAGAG 61.592 72.222 0.00 0.00 0.00 3.20
377 393 2.515057 GCGAGGCGAGGAGAGAGA 60.515 66.667 0.00 0.00 0.00 3.10
378 394 2.542907 GCGAGGCGAGGAGAGAGAG 61.543 68.421 0.00 0.00 0.00 3.20
379 395 1.145156 CGAGGCGAGGAGAGAGAGA 59.855 63.158 0.00 0.00 0.00 3.10
380 396 0.462937 CGAGGCGAGGAGAGAGAGAA 60.463 60.000 0.00 0.00 0.00 2.87
381 397 1.757682 GAGGCGAGGAGAGAGAGAAA 58.242 55.000 0.00 0.00 0.00 2.52
382 398 1.676006 GAGGCGAGGAGAGAGAGAAAG 59.324 57.143 0.00 0.00 0.00 2.62
383 399 1.283613 AGGCGAGGAGAGAGAGAAAGA 59.716 52.381 0.00 0.00 0.00 2.52
384 400 1.676006 GGCGAGGAGAGAGAGAAAGAG 59.324 57.143 0.00 0.00 0.00 2.85
385 401 2.639065 GCGAGGAGAGAGAGAAAGAGA 58.361 52.381 0.00 0.00 0.00 3.10
386 402 2.614057 GCGAGGAGAGAGAGAAAGAGAG 59.386 54.545 0.00 0.00 0.00 3.20
387 403 3.681594 GCGAGGAGAGAGAGAAAGAGAGA 60.682 52.174 0.00 0.00 0.00 3.10
388 404 4.122776 CGAGGAGAGAGAGAAAGAGAGAG 58.877 52.174 0.00 0.00 0.00 3.20
389 405 4.141937 CGAGGAGAGAGAGAAAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
390 406 5.363939 GAGGAGAGAGAGAAAGAGAGAGAG 58.636 50.000 0.00 0.00 0.00 3.20
391 407 5.032846 AGGAGAGAGAGAAAGAGAGAGAGA 58.967 45.833 0.00 0.00 0.00 3.10
392 408 5.130145 AGGAGAGAGAGAAAGAGAGAGAGAG 59.870 48.000 0.00 0.00 0.00 3.20
393 409 5.129485 GGAGAGAGAGAAAGAGAGAGAGAGA 59.871 48.000 0.00 0.00 0.00 3.10
394 410 6.232581 AGAGAGAGAAAGAGAGAGAGAGAG 57.767 45.833 0.00 0.00 0.00 3.20
395 411 5.960811 AGAGAGAGAAAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
396 412 6.098124 AGAGAGAGAAAGAGAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
397 413 5.960811 AGAGAGAAAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
398 414 6.098124 AGAGAGAAAGAGAGAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
399 415 5.960811 AGAGAAAGAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
400 416 6.098124 AGAGAAAGAGAGAGAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
401 417 5.130145 AGAAAGAGAGAGAGAGAGAGAGAGG 59.870 48.000 0.00 0.00 0.00 3.69
402 418 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
436 452 3.451178 CGTATTTCTTCTTCCCCCTCTCA 59.549 47.826 0.00 0.00 0.00 3.27
439 455 2.541233 TCTTCTTCCCCCTCTCAGAG 57.459 55.000 0.00 0.00 0.00 3.35
516 552 1.144565 CCTCGTTCATCAGCAGCTCG 61.145 60.000 0.00 0.00 0.00 5.03
519 555 0.733909 CGTTCATCAGCAGCTCGTCA 60.734 55.000 0.00 0.00 0.00 4.35
551 587 4.563993 GGCCGCATACTATTATTACCACCA 60.564 45.833 0.00 0.00 0.00 4.17
552 588 5.183228 GCCGCATACTATTATTACCACCAT 58.817 41.667 0.00 0.00 0.00 3.55
553 589 5.293569 GCCGCATACTATTATTACCACCATC 59.706 44.000 0.00 0.00 0.00 3.51
554 590 6.403049 CCGCATACTATTATTACCACCATCA 58.597 40.000 0.00 0.00 0.00 3.07
571 607 3.327404 ACCCCCGCAAATCCTCGT 61.327 61.111 0.00 0.00 0.00 4.18
612 648 2.224079 CGGCTGATTGATTGATTACCCG 59.776 50.000 0.00 0.00 0.00 5.28
630 670 1.669265 CCGCCCTAAGAACCGAAAATC 59.331 52.381 0.00 0.00 0.00 2.17
632 672 2.745281 CGCCCTAAGAACCGAAAATCAA 59.255 45.455 0.00 0.00 0.00 2.57
722 762 4.358494 TTTTCGTTTTCTTGCTTTCCGA 57.642 36.364 0.00 0.00 0.00 4.55
802 843 2.742053 CGATTCCGATTTGTGTTCCTGT 59.258 45.455 0.00 0.00 38.22 4.00
856 897 3.383681 TCCAATCCGTTCGGCCGA 61.384 61.111 27.28 27.28 0.00 5.54
881 922 3.006967 CCTCTCTTCGGTTTCCTTTCTCA 59.993 47.826 0.00 0.00 0.00 3.27
922 963 1.268079 GTTGGCCTCAGCTGTTTCTTC 59.732 52.381 14.67 0.94 39.73 2.87
923 964 0.767375 TGGCCTCAGCTGTTTCTTCT 59.233 50.000 14.67 0.00 39.73 2.85
926 967 2.625314 GGCCTCAGCTGTTTCTTCTTTT 59.375 45.455 14.67 0.00 39.73 2.27
929 970 4.794329 GCCTCAGCTGTTTCTTCTTTTTCC 60.794 45.833 14.67 0.00 35.50 3.13
965 1010 1.237954 TAATTGCGCGCCTGTTTCCA 61.238 50.000 30.77 3.44 0.00 3.53
969 1014 1.372872 GCGCGCCTGTTTCCATTTT 60.373 52.632 23.24 0.00 0.00 1.82
1035 1080 4.012374 GCAAGATGAATTTGGAGGTGAGA 58.988 43.478 0.00 0.00 0.00 3.27
1108 1162 3.553508 CCAATTGGAAAGTGCTCTGTTGG 60.554 47.826 20.50 0.00 41.24 3.77
1170 1224 0.980423 AGAACCTGAAGCTGGAGGAC 59.020 55.000 16.51 10.32 33.16 3.85
1208 1262 2.512515 GGACATGGACGAGCCTGC 60.513 66.667 0.00 0.00 37.63 4.85
1221 1275 2.688794 GCCTGCTGTTGCTGAGAGC 61.689 63.158 3.42 3.42 44.56 4.09
1235 1289 4.899239 GAGCGGCGAGGTGGATGG 62.899 72.222 12.98 0.00 0.00 3.51
1275 1329 4.608514 TGCCCCTTGACCCCCAGA 62.609 66.667 0.00 0.00 0.00 3.86
1293 1347 3.137913 CCAGAGATTCCATGACCTCCAAT 59.862 47.826 0.00 0.00 0.00 3.16
1420 1474 1.743252 CTCTCAAGGCAAGACCGGC 60.743 63.158 0.00 0.00 46.52 6.13
1430 1484 2.276116 AAGACCGGCTCGAGCTCAA 61.276 57.895 34.46 0.00 41.70 3.02
1632 1686 1.196808 GGTGCGAATGATTTCACACGT 59.803 47.619 11.61 0.00 42.97 4.49
1750 1804 8.528044 AAAGTAAGTCTGTCCAAAATGGTTTA 57.472 30.769 0.00 0.00 39.03 2.01
1844 1898 5.484173 TTCATGGATTTGATCGTTACAGC 57.516 39.130 0.00 0.00 0.00 4.40
1982 2039 2.636830 CATGAACGCCTCCAAGAATCT 58.363 47.619 0.00 0.00 0.00 2.40
2066 2123 4.337555 GCTCTGAAGTGCATTGGATTACAT 59.662 41.667 0.00 0.00 34.92 2.29
2069 2126 4.018490 TGAAGTGCATTGGATTACATGCT 58.982 39.130 5.77 0.00 40.41 3.79
2201 2258 3.441922 GGAAAGATTTCACTGAGGCCTTC 59.558 47.826 6.77 0.10 38.92 3.46
2297 2354 5.600484 AGCTGCTATACAAGGTCTGTTAGAT 59.400 40.000 0.00 0.00 39.64 1.98
2400 2457 5.233050 CGCATCTTACTTCAGGTAATGACAG 59.767 44.000 0.00 0.00 39.36 3.51
2402 2459 6.989169 GCATCTTACTTCAGGTAATGACAGAT 59.011 38.462 0.00 0.00 39.36 2.90
2403 2460 7.497249 GCATCTTACTTCAGGTAATGACAGATT 59.503 37.037 0.00 0.00 39.36 2.40
2497 2560 3.797039 TGAGCAGATAATGTAGGTGCAC 58.203 45.455 8.80 8.80 36.57 4.57
2498 2561 3.197549 TGAGCAGATAATGTAGGTGCACA 59.802 43.478 20.43 0.00 36.57 4.57
2499 2562 3.535561 AGCAGATAATGTAGGTGCACAC 58.464 45.455 20.43 9.90 36.57 3.82
2500 2563 3.055167 AGCAGATAATGTAGGTGCACACA 60.055 43.478 20.43 15.77 36.57 3.72
2501 2564 3.310774 GCAGATAATGTAGGTGCACACAG 59.689 47.826 20.43 3.65 34.18 3.66
2502 2565 4.507710 CAGATAATGTAGGTGCACACAGT 58.492 43.478 20.43 16.54 0.00 3.55
2503 2566 4.937620 CAGATAATGTAGGTGCACACAGTT 59.062 41.667 20.43 12.84 0.00 3.16
2504 2567 4.937620 AGATAATGTAGGTGCACACAGTTG 59.062 41.667 20.43 0.00 0.00 3.16
2505 2568 2.638480 ATGTAGGTGCACACAGTTGT 57.362 45.000 20.43 0.00 35.84 3.32
2519 2582 5.027206 CACAGTTGTGCATCTTACTTCAG 57.973 43.478 0.00 0.00 39.39 3.02
2521 2584 4.202357 ACAGTTGTGCATCTTACTTCAGGA 60.202 41.667 0.00 0.00 0.00 3.86
2522 2585 4.391216 CAGTTGTGCATCTTACTTCAGGAG 59.609 45.833 0.00 0.00 0.00 3.69
2523 2586 4.284490 AGTTGTGCATCTTACTTCAGGAGA 59.716 41.667 0.00 0.00 0.00 3.71
2524 2587 5.046014 AGTTGTGCATCTTACTTCAGGAGAT 60.046 40.000 0.00 0.00 0.00 2.75
2527 2590 5.046376 TGTGCATCTTACTTCAGGAGATCAA 60.046 40.000 0.00 0.00 0.00 2.57
2528 2591 5.877012 GTGCATCTTACTTCAGGAGATCAAA 59.123 40.000 0.00 0.00 0.00 2.69
2529 2592 6.372659 GTGCATCTTACTTCAGGAGATCAAAA 59.627 38.462 0.00 0.00 0.00 2.44
2530 2593 6.942005 TGCATCTTACTTCAGGAGATCAAAAA 59.058 34.615 0.00 0.00 0.00 1.94
2531 2594 7.120285 TGCATCTTACTTCAGGAGATCAAAAAG 59.880 37.037 0.00 0.00 0.00 2.27
2532 2595 7.470900 CATCTTACTTCAGGAGATCAAAAAGC 58.529 38.462 0.00 0.00 0.00 3.51
2533 2596 6.533730 TCTTACTTCAGGAGATCAAAAAGCA 58.466 36.000 0.00 0.00 0.00 3.91
2534 2597 6.652481 TCTTACTTCAGGAGATCAAAAAGCAG 59.348 38.462 0.00 0.00 0.00 4.24
2535 2598 4.978099 ACTTCAGGAGATCAAAAAGCAGA 58.022 39.130 0.00 0.00 0.00 4.26
2536 2599 5.568392 ACTTCAGGAGATCAAAAAGCAGAT 58.432 37.500 0.00 0.00 0.00 2.90
2537 2600 6.715280 ACTTCAGGAGATCAAAAAGCAGATA 58.285 36.000 0.00 0.00 0.00 1.98
2538 2601 7.170965 ACTTCAGGAGATCAAAAAGCAGATAA 58.829 34.615 0.00 0.00 0.00 1.75
2539 2602 7.833183 ACTTCAGGAGATCAAAAAGCAGATAAT 59.167 33.333 0.00 0.00 0.00 1.28
2540 2603 7.563888 TCAGGAGATCAAAAAGCAGATAATG 57.436 36.000 0.00 0.00 0.00 1.90
2541 2604 7.114754 TCAGGAGATCAAAAAGCAGATAATGT 58.885 34.615 0.00 0.00 0.00 2.71
2542 2605 8.267183 TCAGGAGATCAAAAAGCAGATAATGTA 58.733 33.333 0.00 0.00 0.00 2.29
2543 2606 8.557864 CAGGAGATCAAAAAGCAGATAATGTAG 58.442 37.037 0.00 0.00 0.00 2.74
2544 2607 7.718753 AGGAGATCAAAAAGCAGATAATGTAGG 59.281 37.037 0.00 0.00 0.00 3.18
2545 2608 7.269477 AGATCAAAAAGCAGATAATGTAGGC 57.731 36.000 0.00 0.00 0.00 3.93
2561 2624 2.342279 GCGCACACAGTAGTCCCA 59.658 61.111 0.30 0.00 0.00 4.37
2563 2626 0.673644 GCGCACACAGTAGTCCCATT 60.674 55.000 0.30 0.00 0.00 3.16
2651 2715 5.070446 GGACCTTTTCTTTTGACTGGGAATT 59.930 40.000 0.00 0.00 0.00 2.17
2668 2732 5.163034 TGGGAATTAGACCTTTCTTGTGGAA 60.163 40.000 0.00 0.00 32.75 3.53
2670 2734 6.004574 GGAATTAGACCTTTCTTGTGGAACT 58.995 40.000 0.00 0.00 33.02 3.01
2681 2745 3.507233 TCTTGTGGAACTTTGCCATCATC 59.493 43.478 0.00 0.00 37.81 2.92
2694 2758 8.316214 ACTTTGCCATCATCTTTGAATGTATTT 58.684 29.630 0.00 0.00 34.96 1.40
2828 2892 8.409371 TCAGTTTATAGACTGCTTACTGATGAG 58.591 37.037 16.66 0.00 45.20 2.90
2829 2893 8.194104 CAGTTTATAGACTGCTTACTGATGAGT 58.806 37.037 10.21 0.00 40.43 3.41
2831 2895 7.881775 TTATAGACTGCTTACTGATGAGTGA 57.118 36.000 0.00 0.00 33.21 3.41
2832 2896 6.975196 ATAGACTGCTTACTGATGAGTGAT 57.025 37.500 0.00 0.00 33.21 3.06
2833 2897 9.574516 TTATAGACTGCTTACTGATGAGTGATA 57.425 33.333 0.00 0.00 33.21 2.15
2834 2898 6.782082 AGACTGCTTACTGATGAGTGATAA 57.218 37.500 0.00 0.00 33.21 1.75
2835 2899 6.568869 AGACTGCTTACTGATGAGTGATAAC 58.431 40.000 0.00 0.00 33.21 1.89
2836 2900 5.344066 ACTGCTTACTGATGAGTGATAACG 58.656 41.667 0.00 0.00 33.21 3.18
2837 2901 4.682787 TGCTTACTGATGAGTGATAACGG 58.317 43.478 0.00 0.00 33.21 4.44
2838 2902 4.159693 TGCTTACTGATGAGTGATAACGGT 59.840 41.667 0.00 0.00 33.21 4.83
2839 2903 5.109903 GCTTACTGATGAGTGATAACGGTT 58.890 41.667 0.00 0.00 33.21 4.44
2858 2922 5.104941 ACGGTTTCATCCAGATCTGTAATGA 60.105 40.000 23.90 23.90 32.54 2.57
2886 2950 4.654915 ACTTCATGTGGTGTTCATCATGA 58.345 39.130 0.00 0.00 39.61 3.07
2902 2966 8.902806 GTTCATCATGACAATTTAGGTGGAATA 58.097 33.333 0.00 0.00 0.00 1.75
2907 2971 5.116180 TGACAATTTAGGTGGAATAGCTCG 58.884 41.667 0.00 0.00 38.31 5.03
2925 2997 0.176680 CGTGCTTACCTGAGCCTCAT 59.823 55.000 0.00 0.00 42.01 2.90
2928 3000 3.493350 CGTGCTTACCTGAGCCTCATAAT 60.493 47.826 0.00 0.00 42.01 1.28
2932 3004 5.951747 TGCTTACCTGAGCCTCATAATTTTT 59.048 36.000 0.00 0.00 42.01 1.94
2965 3037 6.610741 AAGTTGAGTTAGTGCTTTGAAGAG 57.389 37.500 0.00 0.00 0.00 2.85
3065 3149 7.414222 ACTTTTACTTGCATGGATGATCAAT 57.586 32.000 0.00 0.00 0.00 2.57
3098 3182 8.552296 AGAATGGTGGAAGATATTACAGAGTTT 58.448 33.333 0.00 0.00 0.00 2.66
3119 3203 6.879458 AGTTTGACCTGGAAAGTATGATACAC 59.121 38.462 5.28 0.00 0.00 2.90
3183 3267 5.643664 TGCAACTCATTTCTGTATTGCATC 58.356 37.500 5.40 0.00 43.16 3.91
3226 3310 6.284459 AGAAAGCTATGTAGGTTCACTATGC 58.716 40.000 5.09 0.00 42.60 3.14
3535 3627 4.517453 GGTGGTGATATTAATTTAGCGGCA 59.483 41.667 1.45 0.00 0.00 5.69
3545 3637 2.772077 TTTAGCGGCACTTGTGGATA 57.228 45.000 1.45 0.00 0.00 2.59
3546 3638 3.275617 TTTAGCGGCACTTGTGGATAT 57.724 42.857 1.45 0.00 0.00 1.63
3547 3639 2.526304 TAGCGGCACTTGTGGATATC 57.474 50.000 1.45 0.00 0.00 1.63
3548 3640 0.541392 AGCGGCACTTGTGGATATCA 59.459 50.000 4.83 0.00 0.00 2.15
3549 3641 1.065491 AGCGGCACTTGTGGATATCAA 60.065 47.619 4.83 0.00 0.00 2.57
3579 3671 7.516450 TCATTTTCTTCCTTCCCTTCTCTAT 57.484 36.000 0.00 0.00 0.00 1.98
3659 3756 9.488124 GTGTATATAAAATTTTGAACGCCGTAA 57.512 29.630 13.76 0.00 0.00 3.18
3668 3765 3.241067 TGAACGCCGTAATTAGAAGCT 57.759 42.857 0.00 0.00 0.00 3.74
3669 3766 4.374843 TGAACGCCGTAATTAGAAGCTA 57.625 40.909 0.00 0.00 0.00 3.32
3726 3823 6.104665 TCTTGTGCTTTCTGACATATGAGAG 58.895 40.000 10.38 4.63 0.00 3.20
4154 4251 1.920835 GGAGCACAGGTTCCCTCCT 60.921 63.158 0.00 0.00 40.51 3.69
4323 4420 0.736325 ACAAGGGATTCGCGTCTTCG 60.736 55.000 5.77 2.52 40.37 3.79
4485 4582 2.818132 CCGCAGAGGCTAAGAGGG 59.182 66.667 0.00 0.00 38.10 4.30
4629 4726 0.463654 TCGCAACCTGCACTCAAACT 60.464 50.000 0.00 0.00 45.36 2.66
4760 4857 2.681778 ACCACCCTGAGAGGCTCG 60.682 66.667 9.22 0.00 32.73 5.03
4851 4955 0.245266 TGTGTGTGTGTGTGTCGTCT 59.755 50.000 0.00 0.00 0.00 4.18
4852 4956 0.921347 GTGTGTGTGTGTGTCGTCTC 59.079 55.000 0.00 0.00 0.00 3.36
4853 4957 0.815095 TGTGTGTGTGTGTCGTCTCT 59.185 50.000 0.00 0.00 0.00 3.10
4854 4958 1.200483 GTGTGTGTGTGTCGTCTCTG 58.800 55.000 0.00 0.00 0.00 3.35
4899 5003 5.476614 GTCTGTTGAGTATTTACCGGAACT 58.523 41.667 9.46 2.89 0.00 3.01
4958 5062 5.007626 CGAGAACATGTTTCTCCAGTTTTCA 59.992 40.000 21.84 0.00 41.31 2.69
5119 5271 2.664851 TACGCACACACTGCCTGC 60.665 61.111 0.00 0.00 43.84 4.85
5134 5286 1.468054 GCCTGCCTGAGTTAATTTGCG 60.468 52.381 0.00 0.00 0.00 4.85
5136 5288 1.133025 CTGCCTGAGTTAATTTGCGGG 59.867 52.381 0.00 0.00 0.00 6.13
5211 5375 8.881747 TCATTTGGATGTCTTGCAAGTTGCAG 62.882 42.308 28.08 21.56 43.14 4.41
5313 5479 3.420893 CTTGATGCCAACTGAAACCCTA 58.579 45.455 0.00 0.00 0.00 3.53
5329 5576 4.323569 ACCCTACAATGAGTGAGAGAGA 57.676 45.455 0.00 0.00 0.00 3.10
5330 5577 4.277476 ACCCTACAATGAGTGAGAGAGAG 58.723 47.826 0.00 0.00 0.00 3.20
5331 5578 4.017958 ACCCTACAATGAGTGAGAGAGAGA 60.018 45.833 0.00 0.00 0.00 3.10
5332 5579 4.580167 CCCTACAATGAGTGAGAGAGAGAG 59.420 50.000 0.00 0.00 0.00 3.20
5333 5580 5.436175 CCTACAATGAGTGAGAGAGAGAGA 58.564 45.833 0.00 0.00 0.00 3.10
5334 5581 5.528690 CCTACAATGAGTGAGAGAGAGAGAG 59.471 48.000 0.00 0.00 0.00 3.20
5335 5582 5.178096 ACAATGAGTGAGAGAGAGAGAGA 57.822 43.478 0.00 0.00 0.00 3.10
5336 5583 5.188434 ACAATGAGTGAGAGAGAGAGAGAG 58.812 45.833 0.00 0.00 0.00 3.20
5337 5584 5.045651 ACAATGAGTGAGAGAGAGAGAGAGA 60.046 44.000 0.00 0.00 0.00 3.10
5338 5585 4.743057 TGAGTGAGAGAGAGAGAGAGAG 57.257 50.000 0.00 0.00 0.00 3.20
5339 5586 4.352893 TGAGTGAGAGAGAGAGAGAGAGA 58.647 47.826 0.00 0.00 0.00 3.10
5340 5587 4.160439 TGAGTGAGAGAGAGAGAGAGAGAC 59.840 50.000 0.00 0.00 0.00 3.36
5341 5588 3.452627 AGTGAGAGAGAGAGAGAGAGACC 59.547 52.174 0.00 0.00 0.00 3.85
5342 5589 2.430694 TGAGAGAGAGAGAGAGAGACCG 59.569 54.545 0.00 0.00 0.00 4.79
5343 5590 2.693591 GAGAGAGAGAGAGAGAGACCGA 59.306 54.545 0.00 0.00 0.00 4.69
5364 5611 5.091431 CGAGAATTCAGAAATTTGGTCAGC 58.909 41.667 8.44 0.00 35.21 4.26
5383 5631 2.957576 CTGAAAAGTCCAGCTCGTTG 57.042 50.000 0.00 0.00 0.00 4.10
5401 5649 3.312421 CGTTGGTGACAGAGAAATGTTGT 59.688 43.478 0.00 0.00 44.54 3.32
5402 5650 4.201910 CGTTGGTGACAGAGAAATGTTGTT 60.202 41.667 0.00 0.00 44.54 2.83
5468 5718 2.040178 TGTTGTTATTTTGGGGGCGTT 58.960 42.857 0.00 0.00 0.00 4.84
5470 5720 0.969894 TGTTATTTTGGGGGCGTTGG 59.030 50.000 0.00 0.00 0.00 3.77
5471 5721 0.248012 GTTATTTTGGGGGCGTTGGG 59.752 55.000 0.00 0.00 0.00 4.12
5481 5731 1.340697 GGGGCGTTGGGGGAATATATC 60.341 57.143 0.00 0.00 0.00 1.63
5482 5732 1.677820 GGGCGTTGGGGGAATATATCG 60.678 57.143 0.00 0.00 0.00 2.92
5483 5733 1.002773 GGCGTTGGGGGAATATATCGT 59.997 52.381 0.00 0.00 0.00 3.73
5489 5743 5.235516 GTTGGGGGAATATATCGTGTGTAG 58.764 45.833 0.00 0.00 0.00 2.74
5490 5744 4.485875 TGGGGGAATATATCGTGTGTAGT 58.514 43.478 0.00 0.00 0.00 2.73
5491 5745 4.282449 TGGGGGAATATATCGTGTGTAGTG 59.718 45.833 0.00 0.00 0.00 2.74
5492 5746 4.322499 GGGGGAATATATCGTGTGTAGTGG 60.322 50.000 0.00 0.00 0.00 4.00
5493 5747 4.525487 GGGGAATATATCGTGTGTAGTGGA 59.475 45.833 0.00 0.00 0.00 4.02
5494 5748 5.336531 GGGGAATATATCGTGTGTAGTGGAG 60.337 48.000 0.00 0.00 0.00 3.86
5496 5750 4.785511 ATATATCGTGTGTAGTGGAGGC 57.214 45.455 0.00 0.00 0.00 4.70
5497 5751 2.139323 TATCGTGTGTAGTGGAGGCT 57.861 50.000 0.00 0.00 0.00 4.58
5499 5753 0.538746 TCGTGTGTAGTGGAGGCTGA 60.539 55.000 0.00 0.00 0.00 4.26
5500 5754 0.317160 CGTGTGTAGTGGAGGCTGAA 59.683 55.000 0.00 0.00 0.00 3.02
5503 5758 2.808543 GTGTGTAGTGGAGGCTGAAAAG 59.191 50.000 0.00 0.00 0.00 2.27
5554 5810 3.279434 AGGAAAAATGATAGGTGTCGCC 58.721 45.455 0.00 0.00 37.58 5.54
5576 5832 1.226717 GTCGCGCTTCGGAGATTCT 60.227 57.895 5.56 0.00 39.05 2.40
5578 5834 0.802222 TCGCGCTTCGGAGATTCTTG 60.802 55.000 5.56 0.00 39.05 3.02
5579 5835 1.349973 GCGCTTCGGAGATTCTTGC 59.650 57.895 0.00 0.00 35.04 4.01
5580 5836 1.633171 CGCTTCGGAGATTCTTGCG 59.367 57.895 0.00 0.00 35.04 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.250328 TTTCTCGCTTCGACCACCTA 58.750 50.000 0.00 0.00 0.00 3.08
1 2 0.608640 ATTTCTCGCTTCGACCACCT 59.391 50.000 0.00 0.00 0.00 4.00
5 6 0.247301 CGCAATTTCTCGCTTCGACC 60.247 55.000 0.00 0.00 0.00 4.79
7 8 1.640428 ATCGCAATTTCTCGCTTCGA 58.360 45.000 0.00 0.00 0.00 3.71
8 9 2.222796 TGAATCGCAATTTCTCGCTTCG 60.223 45.455 0.00 0.00 34.69 3.79
10 11 3.374988 TGATGAATCGCAATTTCTCGCTT 59.625 39.130 0.00 0.00 0.00 4.68
12 13 3.323729 TGATGAATCGCAATTTCTCGC 57.676 42.857 0.00 0.00 0.00 5.03
23 24 5.004061 GCATGTTTGTTGTGATGATGAATCG 59.996 40.000 0.00 0.00 38.22 3.34
27 28 3.827876 AGGCATGTTTGTTGTGATGATGA 59.172 39.130 0.00 0.00 0.00 2.92
39 40 5.542616 TTTTGTGTTGAAAGGCATGTTTG 57.457 34.783 0.00 0.00 0.00 2.93
45 46 3.685139 TGGTTTTTGTGTTGAAAGGCA 57.315 38.095 0.00 0.00 0.00 4.75
58 59 0.039527 GCTCGTTGCGGATGGTTTTT 60.040 50.000 0.00 0.00 0.00 1.94
59 60 1.579429 GCTCGTTGCGGATGGTTTT 59.421 52.632 0.00 0.00 0.00 2.43
87 88 3.895232 TTTTACACAAAGCTTGGCCAA 57.105 38.095 19.25 19.25 34.12 4.52
88 89 3.133721 ACATTTTACACAAAGCTTGGCCA 59.866 39.130 0.00 0.00 34.12 5.36
89 90 3.494251 CACATTTTACACAAAGCTTGGCC 59.506 43.478 0.00 0.00 34.12 5.36
139 140 2.928801 AATTTTGCTGTTTCACCCCC 57.071 45.000 0.00 0.00 0.00 5.40
140 141 3.556213 GGGTAATTTTGCTGTTTCACCCC 60.556 47.826 0.00 0.00 38.76 4.95
168 177 5.285651 TGGCAGTACAAAATTTGTTGCTAC 58.714 37.500 25.30 15.22 43.46 3.58
169 178 5.521906 TGGCAGTACAAAATTTGTTGCTA 57.478 34.783 25.30 20.32 43.46 3.49
170 179 4.370917 CTGGCAGTACAAAATTTGTTGCT 58.629 39.130 25.30 17.56 43.46 3.91
171 180 3.059665 GCTGGCAGTACAAAATTTGTTGC 60.060 43.478 20.98 20.98 42.22 4.17
245 261 3.680786 GAAAAGCGGGGGTGGTGC 61.681 66.667 0.00 0.00 0.00 5.01
274 290 9.863845 CGGCTATTTAAATCTTTTAAAAAGGGA 57.136 29.630 3.39 0.00 0.00 4.20
300 316 3.491652 GCCTCCGCTGCGTTTCTC 61.492 66.667 21.59 2.20 0.00 2.87
313 329 2.514824 GGGTGCTGGATTCGCCTC 60.515 66.667 0.00 0.00 37.63 4.70
345 361 1.691976 CCTCGCCTCTCTCTCTCTCTA 59.308 57.143 0.00 0.00 0.00 2.43
355 371 3.591835 CTCCTCGCCTCGCCTCTC 61.592 72.222 0.00 0.00 0.00 3.20
356 372 4.116585 TCTCCTCGCCTCGCCTCT 62.117 66.667 0.00 0.00 0.00 3.69
357 373 3.591835 CTCTCCTCGCCTCGCCTC 61.592 72.222 0.00 0.00 0.00 4.70
358 374 4.116585 TCTCTCCTCGCCTCGCCT 62.117 66.667 0.00 0.00 0.00 5.52
359 375 3.591835 CTCTCTCCTCGCCTCGCC 61.592 72.222 0.00 0.00 0.00 5.54
360 376 2.515057 TCTCTCTCCTCGCCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
361 377 0.462937 TTCTCTCTCTCCTCGCCTCG 60.463 60.000 0.00 0.00 0.00 4.63
362 378 1.676006 CTTTCTCTCTCTCCTCGCCTC 59.324 57.143 0.00 0.00 0.00 4.70
363 379 1.283613 TCTTTCTCTCTCTCCTCGCCT 59.716 52.381 0.00 0.00 0.00 5.52
364 380 1.676006 CTCTTTCTCTCTCTCCTCGCC 59.324 57.143 0.00 0.00 0.00 5.54
365 381 2.614057 CTCTCTTTCTCTCTCTCCTCGC 59.386 54.545 0.00 0.00 0.00 5.03
366 382 4.122776 CTCTCTCTTTCTCTCTCTCCTCG 58.877 52.174 0.00 0.00 0.00 4.63
367 383 5.129485 TCTCTCTCTCTTTCTCTCTCTCCTC 59.871 48.000 0.00 0.00 0.00 3.71
368 384 5.032846 TCTCTCTCTCTTTCTCTCTCTCCT 58.967 45.833 0.00 0.00 0.00 3.69
369 385 5.129485 TCTCTCTCTCTCTTTCTCTCTCTCC 59.871 48.000 0.00 0.00 0.00 3.71
370 386 6.097554 TCTCTCTCTCTCTCTTTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
371 387 5.960811 TCTCTCTCTCTCTCTTTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
372 388 6.097554 TCTCTCTCTCTCTCTCTTTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
373 389 5.960811 TCTCTCTCTCTCTCTCTTTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
374 390 6.097554 TCTCTCTCTCTCTCTCTCTTTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
375 391 5.960811 TCTCTCTCTCTCTCTCTCTTTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
376 392 6.227298 TCTCTCTCTCTCTCTCTCTTTCTC 57.773 45.833 0.00 0.00 0.00 2.87
377 393 5.130145 CCTCTCTCTCTCTCTCTCTCTTTCT 59.870 48.000 0.00 0.00 0.00 2.52
378 394 5.363939 CCTCTCTCTCTCTCTCTCTCTTTC 58.636 50.000 0.00 0.00 0.00 2.62
379 395 4.164988 CCCTCTCTCTCTCTCTCTCTCTTT 59.835 50.000 0.00 0.00 0.00 2.52
380 396 3.713764 CCCTCTCTCTCTCTCTCTCTCTT 59.286 52.174 0.00 0.00 0.00 2.85
381 397 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
382 398 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
383 399 3.051803 TCTCCCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
384 400 3.309296 TCTCCCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
385 401 3.051803 TCTCTCCCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
386 402 3.309296 TCTCTCCCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
387 403 3.312890 CTCTCTCCCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
388 404 2.370189 CCTCTCTCCCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
389 405 2.412591 CCTCTCTCCCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
390 406 1.202818 GCCTCTCTCCCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
391 407 0.846693 GCCTCTCTCCCTCTCTCTCT 59.153 60.000 0.00 0.00 0.00 3.10
392 408 0.535102 CGCCTCTCTCCCTCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
393 409 0.986019 TCGCCTCTCTCCCTCTCTCT 60.986 60.000 0.00 0.00 0.00 3.10
394 410 0.535102 CTCGCCTCTCTCCCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
395 411 1.531748 CTCGCCTCTCTCCCTCTCT 59.468 63.158 0.00 0.00 0.00 3.10
396 412 2.193536 GCTCGCCTCTCTCCCTCTC 61.194 68.421 0.00 0.00 0.00 3.20
397 413 2.123897 GCTCGCCTCTCTCCCTCT 60.124 66.667 0.00 0.00 0.00 3.69
398 414 2.944409 TACGCTCGCCTCTCTCCCTC 62.944 65.000 0.00 0.00 0.00 4.30
399 415 2.346284 ATACGCTCGCCTCTCTCCCT 62.346 60.000 0.00 0.00 0.00 4.20
400 416 1.457009 AATACGCTCGCCTCTCTCCC 61.457 60.000 0.00 0.00 0.00 4.30
401 417 0.386113 AAATACGCTCGCCTCTCTCC 59.614 55.000 0.00 0.00 0.00 3.71
402 418 1.335496 AGAAATACGCTCGCCTCTCTC 59.665 52.381 0.00 0.00 0.00 3.20
436 452 3.024217 GAGCCCTCCTCCTCCTCT 58.976 66.667 0.00 0.00 34.35 3.69
493 526 2.892425 GCTGATGAACGAGGCGGG 60.892 66.667 0.00 0.00 0.00 6.13
496 529 1.427592 GAGCTGCTGATGAACGAGGC 61.428 60.000 7.01 0.00 0.00 4.70
499 532 0.456824 GACGAGCTGCTGATGAACGA 60.457 55.000 7.01 0.00 0.00 3.85
506 539 2.340078 GTGGTGACGAGCTGCTGA 59.660 61.111 7.01 0.00 0.00 4.26
551 587 1.227383 GAGGATTTGCGGGGGTGAT 59.773 57.895 0.00 0.00 0.00 3.06
552 588 2.674754 GAGGATTTGCGGGGGTGA 59.325 61.111 0.00 0.00 0.00 4.02
553 589 2.824041 CGAGGATTTGCGGGGGTG 60.824 66.667 0.00 0.00 0.00 4.61
554 590 2.814913 GAACGAGGATTTGCGGGGGT 62.815 60.000 0.00 0.00 0.00 4.95
571 607 2.999063 GGACGAACGGGGAGGGAA 60.999 66.667 0.00 0.00 0.00 3.97
612 648 4.776795 TTTGATTTTCGGTTCTTAGGGC 57.223 40.909 0.00 0.00 0.00 5.19
630 670 5.289434 GCCAAAGCGGAGATCTTTATTTTTG 59.711 40.000 0.00 5.37 36.56 2.44
632 672 4.142160 GGCCAAAGCGGAGATCTTTATTTT 60.142 41.667 0.00 0.00 41.24 1.82
705 745 1.663161 GCCTCGGAAAGCAAGAAAACG 60.663 52.381 0.00 0.00 0.00 3.60
773 814 0.810031 AAATCGGAATCGGGTGAGCG 60.810 55.000 0.00 0.00 36.95 5.03
802 843 2.353704 CGCTCACAGAATCAACCACCTA 60.354 50.000 0.00 0.00 0.00 3.08
834 875 1.693083 GCCGAACGGATTGGACGAAG 61.693 60.000 17.63 0.00 37.50 3.79
856 897 2.312424 AGGAAACCGAAGAGAGGAGT 57.688 50.000 0.00 0.00 0.00 3.85
881 922 1.625818 AGAGCGAATCCAACTCACCTT 59.374 47.619 0.00 0.00 32.71 3.50
922 963 2.673368 CAGACGAATCGAGGGGAAAAAG 59.327 50.000 10.55 0.00 0.00 2.27
923 964 2.695359 CAGACGAATCGAGGGGAAAAA 58.305 47.619 10.55 0.00 0.00 1.94
926 967 1.515954 GCAGACGAATCGAGGGGAA 59.484 57.895 10.55 0.00 0.00 3.97
929 970 0.099968 TTACGCAGACGAATCGAGGG 59.900 55.000 10.55 9.57 43.93 4.30
965 1010 2.094675 CCTCGATCCAACCTGCAAAAT 58.905 47.619 0.00 0.00 0.00 1.82
969 1014 2.989639 CCCTCGATCCAACCTGCA 59.010 61.111 0.00 0.00 0.00 4.41
1035 1080 5.047021 TGAGAATTTCGATTCAGAGTGACCT 60.047 40.000 1.86 0.00 33.16 3.85
1108 1162 4.503714 TGGATCCAATCTACTCCCAAAC 57.496 45.455 13.46 0.00 0.00 2.93
1170 1224 4.785453 GCGGAGGAAGGCAGTGGG 62.785 72.222 0.00 0.00 0.00 4.61
1208 1262 3.485431 CGCCGCTCTCAGCAACAG 61.485 66.667 0.00 0.00 42.58 3.16
1275 1329 4.530875 GAACATTGGAGGTCATGGAATCT 58.469 43.478 0.00 0.00 0.00 2.40
1293 1347 0.823356 GCTCTTTGGCCACAGGAACA 60.823 55.000 18.76 0.00 0.00 3.18
1420 1474 0.600255 AACAACCGGTTGAGCTCGAG 60.600 55.000 45.25 22.57 42.93 4.04
1430 1484 2.268076 GCATGCTGGAACAACCGGT 61.268 57.895 11.37 0.00 46.24 5.28
1493 1547 0.743701 GAGTCCCTGTGCATCAGCTG 60.744 60.000 7.63 7.63 42.38 4.24
1647 1701 1.374252 ACACGATGCCAGGAACGAC 60.374 57.895 0.00 0.00 0.00 4.34
1750 1804 7.387673 TGATTCAAGACAAACTGTAACGATCAT 59.612 33.333 0.00 0.00 0.00 2.45
1844 1898 3.482722 AAGCATGCGATTCAAGACAAG 57.517 42.857 13.01 0.00 0.00 3.16
1982 2039 3.494924 CCTTCAATACCTCATCGCCATGA 60.495 47.826 0.00 0.00 36.62 3.07
2066 2123 4.056125 CTCTCCCGCACACGAGCA 62.056 66.667 0.00 0.00 43.93 4.26
2069 2126 2.044555 CCTACTCTCCCGCACACGA 61.045 63.158 0.00 0.00 43.93 4.35
2297 2354 0.250553 CGCCACCCTCTACCAACAAA 60.251 55.000 0.00 0.00 0.00 2.83
2400 2457 4.564041 AGATGCACATGAGGACGATAATC 58.436 43.478 0.00 0.00 0.00 1.75
2402 2459 4.406648 AAGATGCACATGAGGACGATAA 57.593 40.909 0.00 0.00 0.00 1.75
2403 2460 4.584743 AGTAAGATGCACATGAGGACGATA 59.415 41.667 0.00 0.00 0.00 2.92
2498 2561 4.067896 CCTGAAGTAAGATGCACAACTGT 58.932 43.478 0.00 0.00 0.00 3.55
2499 2562 4.318332 TCCTGAAGTAAGATGCACAACTG 58.682 43.478 0.00 0.00 0.00 3.16
2500 2563 4.284490 TCTCCTGAAGTAAGATGCACAACT 59.716 41.667 0.00 0.00 0.00 3.16
2501 2564 4.569943 TCTCCTGAAGTAAGATGCACAAC 58.430 43.478 0.00 0.00 0.00 3.32
2502 2565 4.890158 TCTCCTGAAGTAAGATGCACAA 57.110 40.909 0.00 0.00 0.00 3.33
2503 2566 4.467438 TGATCTCCTGAAGTAAGATGCACA 59.533 41.667 0.00 0.00 30.04 4.57
2504 2567 5.016051 TGATCTCCTGAAGTAAGATGCAC 57.984 43.478 0.00 0.00 30.04 4.57
2505 2568 5.682234 TTGATCTCCTGAAGTAAGATGCA 57.318 39.130 0.00 0.00 30.04 3.96
2506 2569 6.992063 TTTTGATCTCCTGAAGTAAGATGC 57.008 37.500 0.00 0.00 30.04 3.91
2507 2570 7.120285 TGCTTTTTGATCTCCTGAAGTAAGATG 59.880 37.037 0.00 0.00 30.04 2.90
2508 2571 7.170965 TGCTTTTTGATCTCCTGAAGTAAGAT 58.829 34.615 0.00 0.00 32.53 2.40
2509 2572 6.533730 TGCTTTTTGATCTCCTGAAGTAAGA 58.466 36.000 0.00 0.00 0.00 2.10
2510 2573 6.652481 TCTGCTTTTTGATCTCCTGAAGTAAG 59.348 38.462 0.00 0.00 0.00 2.34
2513 2576 4.978099 TCTGCTTTTTGATCTCCTGAAGT 58.022 39.130 0.00 0.00 0.00 3.01
2514 2577 7.621428 TTATCTGCTTTTTGATCTCCTGAAG 57.379 36.000 0.00 0.00 0.00 3.02
2516 2579 7.114754 ACATTATCTGCTTTTTGATCTCCTGA 58.885 34.615 0.00 0.00 0.00 3.86
2517 2580 7.330900 ACATTATCTGCTTTTTGATCTCCTG 57.669 36.000 0.00 0.00 0.00 3.86
2518 2581 7.718753 CCTACATTATCTGCTTTTTGATCTCCT 59.281 37.037 0.00 0.00 0.00 3.69
2519 2582 7.521261 GCCTACATTATCTGCTTTTTGATCTCC 60.521 40.741 0.00 0.00 0.00 3.71
2521 2584 6.017605 CGCCTACATTATCTGCTTTTTGATCT 60.018 38.462 0.00 0.00 0.00 2.75
2522 2585 6.138761 CGCCTACATTATCTGCTTTTTGATC 58.861 40.000 0.00 0.00 0.00 2.92
2523 2586 5.506317 GCGCCTACATTATCTGCTTTTTGAT 60.506 40.000 0.00 0.00 0.00 2.57
2524 2587 4.201910 GCGCCTACATTATCTGCTTTTTGA 60.202 41.667 0.00 0.00 0.00 2.69
2527 2590 3.065371 GTGCGCCTACATTATCTGCTTTT 59.935 43.478 4.18 0.00 0.00 2.27
2528 2591 2.614057 GTGCGCCTACATTATCTGCTTT 59.386 45.455 4.18 0.00 0.00 3.51
2529 2592 2.213499 GTGCGCCTACATTATCTGCTT 58.787 47.619 4.18 0.00 0.00 3.91
2530 2593 1.138859 TGTGCGCCTACATTATCTGCT 59.861 47.619 4.18 0.00 0.00 4.24
2531 2594 1.261619 GTGTGCGCCTACATTATCTGC 59.738 52.381 4.18 0.00 32.43 4.26
2532 2595 2.541346 CTGTGTGCGCCTACATTATCTG 59.459 50.000 13.24 0.00 32.43 2.90
2533 2596 2.168521 ACTGTGTGCGCCTACATTATCT 59.831 45.455 13.24 0.00 32.43 1.98
2534 2597 2.550978 ACTGTGTGCGCCTACATTATC 58.449 47.619 13.24 0.00 32.43 1.75
2535 2598 2.691409 ACTGTGTGCGCCTACATTAT 57.309 45.000 13.24 1.71 32.43 1.28
2536 2599 2.494471 ACTACTGTGTGCGCCTACATTA 59.506 45.455 13.24 11.24 32.43 1.90
2537 2600 1.275291 ACTACTGTGTGCGCCTACATT 59.725 47.619 13.24 10.74 32.43 2.71
2538 2601 0.895530 ACTACTGTGTGCGCCTACAT 59.104 50.000 13.24 7.48 32.43 2.29
2539 2602 0.242825 GACTACTGTGTGCGCCTACA 59.757 55.000 4.18 9.44 0.00 2.74
2540 2603 0.458025 GGACTACTGTGTGCGCCTAC 60.458 60.000 4.18 4.29 0.00 3.18
2541 2604 1.601419 GGGACTACTGTGTGCGCCTA 61.601 60.000 4.18 0.00 0.00 3.93
2542 2605 2.657237 GGACTACTGTGTGCGCCT 59.343 61.111 4.18 0.00 0.00 5.52
2543 2606 2.434359 GGGACTACTGTGTGCGCC 60.434 66.667 4.18 0.00 0.00 6.53
2544 2607 0.673644 AATGGGACTACTGTGTGCGC 60.674 55.000 0.00 0.00 0.00 6.09
2545 2608 1.078709 CAATGGGACTACTGTGTGCG 58.921 55.000 0.00 0.00 0.00 5.34
2651 2715 4.578928 GCAAAGTTCCACAAGAAAGGTCTA 59.421 41.667 0.00 0.00 35.85 2.59
2668 2732 5.733620 ACATTCAAAGATGATGGCAAAGT 57.266 34.783 0.00 0.00 34.96 2.66
2670 2734 7.549842 CCAAATACATTCAAAGATGATGGCAAA 59.450 33.333 0.00 0.00 34.96 3.68
2681 2745 6.183359 GCAGTTTACGCCAAATACATTCAAAG 60.183 38.462 0.00 0.00 0.00 2.77
2694 2758 1.070134 AGACTGAAGCAGTTTACGCCA 59.930 47.619 1.18 0.00 45.44 5.69
2745 2809 7.628769 TTTTTAAAGGTTCAGTCGTTTAGGT 57.371 32.000 0.00 0.00 32.15 3.08
2808 2872 9.574516 TTATCACTCATCAGTAAGCAGTCTATA 57.425 33.333 0.00 0.00 0.00 1.31
2828 2892 5.235186 CAGATCTGGATGAAACCGTTATCAC 59.765 44.000 15.38 0.00 0.00 3.06
2829 2893 5.104941 ACAGATCTGGATGAAACCGTTATCA 60.105 40.000 26.08 0.00 34.19 2.15
2831 2895 5.359194 ACAGATCTGGATGAAACCGTTAT 57.641 39.130 26.08 0.00 34.19 1.89
2832 2896 4.819105 ACAGATCTGGATGAAACCGTTA 57.181 40.909 26.08 0.00 34.19 3.18
2833 2897 3.703001 ACAGATCTGGATGAAACCGTT 57.297 42.857 26.08 0.00 34.19 4.44
2834 2898 4.819105 TTACAGATCTGGATGAAACCGT 57.181 40.909 26.08 4.15 34.19 4.83
2835 2899 5.359756 TCATTACAGATCTGGATGAAACCG 58.640 41.667 27.88 11.84 35.68 4.44
2836 2900 7.630242 TTTCATTACAGATCTGGATGAAACC 57.370 36.000 35.69 0.00 43.66 3.27
2838 2902 7.405292 AGGTTTCATTACAGATCTGGATGAAA 58.595 34.615 35.69 35.69 44.78 2.69
2839 2903 6.962182 AGGTTTCATTACAGATCTGGATGAA 58.038 36.000 31.81 31.81 41.25 2.57
2858 2922 4.787551 TGAACACCACATGAAGTAGGTTT 58.212 39.130 0.00 0.00 31.87 3.27
2886 2950 4.876107 CACGAGCTATTCCACCTAAATTGT 59.124 41.667 0.00 0.00 0.00 2.71
2907 2971 3.543680 TTATGAGGCTCAGGTAAGCAC 57.456 47.619 23.24 0.00 44.35 4.40
2932 3004 8.726870 AGCACTAACTCAACTTAGTTAAACAA 57.273 30.769 0.00 0.00 40.49 2.83
2936 3008 8.951787 TCAAAGCACTAACTCAACTTAGTTAA 57.048 30.769 0.00 0.00 40.49 2.01
3037 3121 9.797642 TGATCATCCATGCAAGTAAAAGTATAT 57.202 29.630 0.00 0.00 0.00 0.86
3098 3182 7.914427 ATAGTGTATCATACTTTCCAGGTCA 57.086 36.000 0.00 0.00 0.00 4.02
3119 3203 5.462398 CCGTTTGTGCTAGCTACCTAAATAG 59.538 44.000 17.23 8.14 0.00 1.73
3128 3212 1.890489 TGTCTCCGTTTGTGCTAGCTA 59.110 47.619 17.23 1.87 0.00 3.32
3134 3218 3.559238 AATCAATGTCTCCGTTTGTGC 57.441 42.857 0.00 0.00 0.00 4.57
3183 3267 3.995199 TCTTAATCTGGCCTGAATAGCG 58.005 45.455 17.04 7.85 0.00 4.26
3226 3310 5.013568 TCATTTTTGCCTCATGCCTTATG 57.986 39.130 0.00 0.00 40.16 1.90
3293 3377 6.453943 AGTAAAAGGAGAGTACGAGGAAAAC 58.546 40.000 0.00 0.00 0.00 2.43
3340 3432 5.414454 TGTCCATGTTATCCTTGTTGTAAGC 59.586 40.000 0.00 0.00 0.00 3.09
3346 3438 5.481473 AGCAAATGTCCATGTTATCCTTGTT 59.519 36.000 0.00 0.00 0.00 2.83
3546 3638 9.325248 AGGGAAGGAAGAAAATGATTTAATTGA 57.675 29.630 0.00 0.00 0.00 2.57
3547 3639 9.948964 AAGGGAAGGAAGAAAATGATTTAATTG 57.051 29.630 0.00 0.00 0.00 2.32
3549 3641 9.552695 AGAAGGGAAGGAAGAAAATGATTTAAT 57.447 29.630 0.00 0.00 0.00 1.40
3644 3739 5.123344 AGCTTCTAATTACGGCGTTCAAAAT 59.877 36.000 21.24 9.15 0.00 1.82
3726 3823 5.519722 TGTGCCTCGAGAAAAAGAAAATTC 58.480 37.500 15.71 0.00 0.00 2.17
3742 3839 4.332543 TGATTGACGATACATTTGTGCCTC 59.667 41.667 0.00 0.00 0.00 4.70
3743 3840 4.260985 TGATTGACGATACATTTGTGCCT 58.739 39.130 0.00 0.00 0.00 4.75
4154 4251 3.055385 CCGGAGAAGAAAATCCACACCTA 60.055 47.826 0.00 0.00 35.14 3.08
4316 4413 0.861837 AAAGTGCTCTTGCGAAGACG 59.138 50.000 1.02 0.00 43.34 4.18
4323 4420 2.849880 TGTTGACAAAGTGCTCTTGC 57.150 45.000 1.02 0.00 40.20 4.01
4525 4622 4.351054 CTGGGTGCCCCTGTCCAC 62.351 72.222 11.10 0.00 45.70 4.02
4816 4913 2.080693 ACACACGACACAACACAACAT 58.919 42.857 0.00 0.00 0.00 2.71
4851 4955 1.368641 GCACAAGACACACACACAGA 58.631 50.000 0.00 0.00 0.00 3.41
4852 4956 0.026674 CGCACAAGACACACACACAG 59.973 55.000 0.00 0.00 0.00 3.66
4853 4957 0.390472 TCGCACAAGACACACACACA 60.390 50.000 0.00 0.00 0.00 3.72
4854 4958 0.301687 CTCGCACAAGACACACACAC 59.698 55.000 0.00 0.00 0.00 3.82
4958 5062 4.080751 ACAAGGCCATATGTACGGTTTACT 60.081 41.667 5.01 0.00 0.00 2.24
5048 5200 3.276857 CCACCCATCAAGAGATTGACAG 58.723 50.000 0.00 0.00 33.23 3.51
5119 5271 2.163613 GGTTCCCGCAAATTAACTCAGG 59.836 50.000 0.00 0.00 0.00 3.86
5120 5272 2.817258 TGGTTCCCGCAAATTAACTCAG 59.183 45.455 0.00 0.00 0.00 3.35
5134 5286 2.093500 GGCTCCATCAATTTTGGTTCCC 60.093 50.000 4.50 1.42 35.64 3.97
5136 5288 3.511146 TCAGGCTCCATCAATTTTGGTTC 59.489 43.478 4.50 0.00 35.64 3.62
5145 5297 2.093288 GTCATGTCTCAGGCTCCATCAA 60.093 50.000 0.00 0.00 0.00 2.57
5211 5375 1.259840 TACTACCCCGACCTGTTGGC 61.260 60.000 0.00 0.00 36.63 4.52
5268 5434 5.119694 GGACAGGACATCTAAAGACCATTC 58.880 45.833 0.00 0.00 0.00 2.67
5313 5479 5.045651 TCTCTCTCTCTCTCTCACTCATTGT 60.046 44.000 0.00 0.00 0.00 2.71
5329 5576 4.080582 TCTGAATTCTCGGTCTCTCTCTCT 60.081 45.833 7.05 0.00 0.00 3.10
5330 5577 4.196193 TCTGAATTCTCGGTCTCTCTCTC 58.804 47.826 7.05 0.00 0.00 3.20
5331 5578 4.229304 TCTGAATTCTCGGTCTCTCTCT 57.771 45.455 7.05 0.00 0.00 3.10
5332 5579 4.974368 TTCTGAATTCTCGGTCTCTCTC 57.026 45.455 7.05 0.00 0.00 3.20
5333 5580 5.930837 ATTTCTGAATTCTCGGTCTCTCT 57.069 39.130 7.05 0.00 0.00 3.10
5334 5581 6.183360 CCAAATTTCTGAATTCTCGGTCTCTC 60.183 42.308 7.05 0.00 34.44 3.20
5335 5582 5.645497 CCAAATTTCTGAATTCTCGGTCTCT 59.355 40.000 7.05 0.00 34.44 3.10
5336 5583 5.412904 ACCAAATTTCTGAATTCTCGGTCTC 59.587 40.000 7.05 0.00 34.44 3.36
5337 5584 5.316987 ACCAAATTTCTGAATTCTCGGTCT 58.683 37.500 7.05 0.00 34.44 3.85
5338 5585 5.181245 TGACCAAATTTCTGAATTCTCGGTC 59.819 40.000 7.05 14.54 42.36 4.79
5339 5586 5.070001 TGACCAAATTTCTGAATTCTCGGT 58.930 37.500 7.05 1.81 36.07 4.69
5340 5587 5.627499 TGACCAAATTTCTGAATTCTCGG 57.373 39.130 7.05 0.00 34.44 4.63
5341 5588 5.091431 GCTGACCAAATTTCTGAATTCTCG 58.909 41.667 7.05 0.00 34.44 4.04
5342 5589 6.072286 TCAGCTGACCAAATTTCTGAATTCTC 60.072 38.462 13.74 0.00 34.44 2.87
5343 5590 5.771666 TCAGCTGACCAAATTTCTGAATTCT 59.228 36.000 13.74 0.00 34.44 2.40
5364 5611 1.532868 CCAACGAGCTGGACTTTTCAG 59.467 52.381 1.44 0.00 38.96 3.02
5383 5631 6.918022 CCTAAAAACAACATTTCTCTGTCACC 59.082 38.462 0.00 0.00 0.00 4.02
5440 5690 6.657117 GCCCCCAAAATAACAACAACAATAAT 59.343 34.615 0.00 0.00 0.00 1.28
5446 5696 2.224090 ACGCCCCCAAAATAACAACAAC 60.224 45.455 0.00 0.00 0.00 3.32
5447 5697 2.040178 ACGCCCCCAAAATAACAACAA 58.960 42.857 0.00 0.00 0.00 2.83
5448 5698 1.705873 ACGCCCCCAAAATAACAACA 58.294 45.000 0.00 0.00 0.00 3.33
5449 5699 2.409012 CAACGCCCCCAAAATAACAAC 58.591 47.619 0.00 0.00 0.00 3.32
5450 5700 1.344763 CCAACGCCCCCAAAATAACAA 59.655 47.619 0.00 0.00 0.00 2.83
5451 5701 0.969894 CCAACGCCCCCAAAATAACA 59.030 50.000 0.00 0.00 0.00 2.41
5452 5702 0.248012 CCCAACGCCCCCAAAATAAC 59.752 55.000 0.00 0.00 0.00 1.89
5453 5703 0.905337 CCCCAACGCCCCCAAAATAA 60.905 55.000 0.00 0.00 0.00 1.40
5454 5704 1.305381 CCCCAACGCCCCCAAAATA 60.305 57.895 0.00 0.00 0.00 1.40
5455 5705 2.606213 CCCCAACGCCCCCAAAAT 60.606 61.111 0.00 0.00 0.00 1.82
5456 5706 4.944069 CCCCCAACGCCCCCAAAA 62.944 66.667 0.00 0.00 0.00 2.44
5460 5710 1.428718 TATATTCCCCCAACGCCCCC 61.429 60.000 0.00 0.00 0.00 5.40
5461 5711 0.702316 ATATATTCCCCCAACGCCCC 59.298 55.000 0.00 0.00 0.00 5.80
5462 5712 1.677820 CGATATATTCCCCCAACGCCC 60.678 57.143 0.00 0.00 0.00 6.13
5468 5718 4.282449 CACTACACACGATATATTCCCCCA 59.718 45.833 0.00 0.00 0.00 4.96
5470 5720 4.525487 TCCACTACACACGATATATTCCCC 59.475 45.833 0.00 0.00 0.00 4.81
5471 5721 5.336531 CCTCCACTACACACGATATATTCCC 60.337 48.000 0.00 0.00 0.00 3.97
5481 5731 0.317160 TTCAGCCTCCACTACACACG 59.683 55.000 0.00 0.00 0.00 4.49
5482 5732 2.543777 TTTCAGCCTCCACTACACAC 57.456 50.000 0.00 0.00 0.00 3.82
5483 5733 2.703536 TCTTTTCAGCCTCCACTACACA 59.296 45.455 0.00 0.00 0.00 3.72
5489 5743 3.409026 TTCTCTCTTTTCAGCCTCCAC 57.591 47.619 0.00 0.00 0.00 4.02
5490 5744 5.762179 TTATTCTCTCTTTTCAGCCTCCA 57.238 39.130 0.00 0.00 0.00 3.86
5491 5745 6.404184 GCTTTTATTCTCTCTTTTCAGCCTCC 60.404 42.308 0.00 0.00 0.00 4.30
5492 5746 6.150140 TGCTTTTATTCTCTCTTTTCAGCCTC 59.850 38.462 0.00 0.00 0.00 4.70
5493 5747 6.006449 TGCTTTTATTCTCTCTTTTCAGCCT 58.994 36.000 0.00 0.00 0.00 4.58
5494 5748 6.259550 TGCTTTTATTCTCTCTTTTCAGCC 57.740 37.500 0.00 0.00 0.00 4.85
5496 5750 7.365741 TGCTTGCTTTTATTCTCTCTTTTCAG 58.634 34.615 0.00 0.00 0.00 3.02
5497 5751 7.275888 TGCTTGCTTTTATTCTCTCTTTTCA 57.724 32.000 0.00 0.00 0.00 2.69
5499 5753 7.654923 CCTTTGCTTGCTTTTATTCTCTCTTTT 59.345 33.333 0.00 0.00 0.00 2.27
5500 5754 7.150640 CCTTTGCTTGCTTTTATTCTCTCTTT 58.849 34.615 0.00 0.00 0.00 2.52
5503 5758 6.018589 ACCTTTGCTTGCTTTTATTCTCTC 57.981 37.500 0.00 0.00 0.00 3.20
5568 5824 1.534729 AAACACCCGCAAGAATCTCC 58.465 50.000 0.00 0.00 43.02 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.