Multiple sequence alignment - TraesCS4B01G085600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G085600 chr4B 100.000 4841 0 0 1 4841 86057611 86062451 0.000000e+00 8940.0
1 TraesCS4B01G085600 chr4B 91.602 643 28 11 1 632 568636135 568635508 0.000000e+00 865.0
2 TraesCS4B01G085600 chr4B 96.571 175 6 0 2687 2861 71600791 71600617 1.700000e-74 291.0
3 TraesCS4B01G085600 chr4B 93.194 191 11 2 2666 2854 551080105 551079915 3.690000e-71 279.0
4 TraesCS4B01G085600 chr4D 91.592 1903 87 24 2969 4841 57474036 57475895 0.000000e+00 2560.0
5 TraesCS4B01G085600 chr4D 94.461 993 41 11 1710 2690 57472709 57473699 0.000000e+00 1517.0
6 TraesCS4B01G085600 chr4D 89.433 653 47 13 1054 1687 57471941 57472590 0.000000e+00 804.0
7 TraesCS4B01G085600 chr4D 86.774 310 17 12 700 1003 57471654 57471945 1.680000e-84 324.0
8 TraesCS4B01G085600 chr4D 97.674 172 4 0 2686 2857 75782049 75782220 3.660000e-76 296.0
9 TraesCS4B01G085600 chr4D 98.214 168 3 0 2690 2857 93338206 93338039 1.320000e-75 294.0
10 TraesCS4B01G085600 chr4D 81.739 115 3 3 2853 2966 57473695 57473792 4.020000e-11 80.5
11 TraesCS4B01G085600 chr6B 91.309 1795 84 37 938 2690 551789298 551791062 0.000000e+00 2385.0
12 TraesCS4B01G085600 chr6B 91.603 1048 53 17 2969 3991 551791400 551792437 0.000000e+00 1415.0
13 TraesCS4B01G085600 chr6B 94.929 631 28 2 1 627 619730396 619729766 0.000000e+00 985.0
14 TraesCS4B01G085600 chr6B 91.590 654 28 10 1 629 31584811 31585462 0.000000e+00 878.0
15 TraesCS4B01G085600 chr6B 95.438 548 24 1 4295 4841 551792826 551793373 0.000000e+00 872.0
16 TraesCS4B01G085600 chr6B 90.116 344 26 5 289 627 544642524 544642864 1.600000e-119 440.0
17 TraesCS4B01G085600 chr6B 89.105 257 18 6 614 869 551784466 551784713 1.310000e-80 311.0
18 TraesCS4B01G085600 chr6B 88.789 223 11 3 4007 4220 551792612 551792829 1.340000e-65 261.0
19 TraesCS4B01G085600 chr6B 93.913 115 3 2 2853 2966 551791058 551791169 2.320000e-38 171.0
20 TraesCS4B01G085600 chr4A 90.547 1756 120 25 3106 4841 539300515 539298786 0.000000e+00 2281.0
21 TraesCS4B01G085600 chr4A 88.710 1116 65 19 725 1808 539302587 539301501 0.000000e+00 1306.0
22 TraesCS4B01G085600 chr4A 88.169 617 47 17 1886 2482 539301504 539300894 0.000000e+00 712.0
23 TraesCS4B01G085600 chr4A 84.685 111 13 3 2557 2664 539300869 539300760 1.840000e-19 108.0
24 TraesCS4B01G085600 chr2B 96.215 634 22 1 1 632 477576736 477576103 0.000000e+00 1037.0
25 TraesCS4B01G085600 chr3B 95.246 631 26 3 1 629 816526910 816527538 0.000000e+00 996.0
26 TraesCS4B01G085600 chr3B 93.488 645 25 3 1 629 596851337 596851980 0.000000e+00 942.0
27 TraesCS4B01G085600 chr3B 92.427 647 27 5 1 626 617427533 617428178 0.000000e+00 904.0
28 TraesCS4B01G085600 chr3B 92.114 634 44 4 1 631 56451579 56452209 0.000000e+00 889.0
29 TraesCS4B01G085600 chr3B 95.028 181 9 0 2680 2860 62970105 62969925 7.930000e-73 285.0
30 TraesCS4B01G085600 chr1B 95.231 629 27 2 1 627 674470005 674470632 0.000000e+00 992.0
31 TraesCS4B01G085600 chr5B 92.890 647 26 4 1 627 446362684 446363330 0.000000e+00 922.0
32 TraesCS4B01G085600 chr5B 92.089 632 34 8 1 630 417803857 417804474 0.000000e+00 876.0
33 TraesCS4B01G085600 chr5B 91.111 630 23 10 6 629 371890309 371889707 0.000000e+00 822.0
34 TraesCS4B01G085600 chr7B 94.074 270 13 2 362 629 119240753 119240485 1.620000e-109 407.0
35 TraesCS4B01G085600 chr7B 96.269 134 4 1 2976 3109 663097968 663097836 8.160000e-53 219.0
36 TraesCS4B01G085600 chr5A 97.688 173 4 0 2685 2857 290391866 290391694 1.020000e-76 298.0
37 TraesCS4B01G085600 chr2D 98.225 169 3 0 2690 2858 560959485 560959653 3.660000e-76 296.0
38 TraesCS4B01G085600 chr1D 97.688 173 3 1 2685 2856 238940210 238940382 3.660000e-76 296.0
39 TraesCS4B01G085600 chr1D 95.522 134 5 1 2976 3109 68403175 68403307 3.800000e-51 213.0
40 TraesCS4B01G085600 chr1D 95.522 134 5 1 2976 3109 254527063 254527195 3.800000e-51 213.0
41 TraesCS4B01G085600 chr1D 95.522 134 5 1 2976 3109 298349173 298349041 3.800000e-51 213.0
42 TraesCS4B01G085600 chr1D 95.522 134 5 1 2976 3109 459903260 459903128 3.800000e-51 213.0
43 TraesCS4B01G085600 chr3D 96.067 178 6 1 2686 2862 360695997 360695820 6.130000e-74 289.0
44 TraesCS4B01G085600 chr5D 95.556 135 5 1 2975 3109 329139102 329139235 1.060000e-51 215.0
45 TraesCS4B01G085600 chr1A 95.522 134 5 1 2976 3109 532075148 532075280 3.800000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G085600 chr4B 86057611 86062451 4840 False 8940.00 8940 100.00000 1 4841 1 chr4B.!!$F1 4840
1 TraesCS4B01G085600 chr4B 568635508 568636135 627 True 865.00 865 91.60200 1 632 1 chr4B.!!$R3 631
2 TraesCS4B01G085600 chr4D 57471654 57475895 4241 False 1057.10 2560 88.79980 700 4841 5 chr4D.!!$F2 4141
3 TraesCS4B01G085600 chr6B 551789298 551793373 4075 False 1020.80 2385 92.21040 938 4841 5 chr6B.!!$F4 3903
4 TraesCS4B01G085600 chr6B 619729766 619730396 630 True 985.00 985 94.92900 1 627 1 chr6B.!!$R1 626
5 TraesCS4B01G085600 chr6B 31584811 31585462 651 False 878.00 878 91.59000 1 629 1 chr6B.!!$F1 628
6 TraesCS4B01G085600 chr4A 539298786 539302587 3801 True 1101.75 2281 88.02775 725 4841 4 chr4A.!!$R1 4116
7 TraesCS4B01G085600 chr2B 477576103 477576736 633 True 1037.00 1037 96.21500 1 632 1 chr2B.!!$R1 631
8 TraesCS4B01G085600 chr3B 816526910 816527538 628 False 996.00 996 95.24600 1 629 1 chr3B.!!$F4 628
9 TraesCS4B01G085600 chr3B 596851337 596851980 643 False 942.00 942 93.48800 1 629 1 chr3B.!!$F2 628
10 TraesCS4B01G085600 chr3B 617427533 617428178 645 False 904.00 904 92.42700 1 626 1 chr3B.!!$F3 625
11 TraesCS4B01G085600 chr3B 56451579 56452209 630 False 889.00 889 92.11400 1 631 1 chr3B.!!$F1 630
12 TraesCS4B01G085600 chr1B 674470005 674470632 627 False 992.00 992 95.23100 1 627 1 chr1B.!!$F1 626
13 TraesCS4B01G085600 chr5B 446362684 446363330 646 False 922.00 922 92.89000 1 627 1 chr5B.!!$F2 626
14 TraesCS4B01G085600 chr5B 417803857 417804474 617 False 876.00 876 92.08900 1 630 1 chr5B.!!$F1 629
15 TraesCS4B01G085600 chr5B 371889707 371890309 602 True 822.00 822 91.11100 6 629 1 chr5B.!!$R1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 219 0.388649 GTCGGAGCTTCACGTGATGT 60.389 55.0 26.48 16.3 0.00 3.06 F
656 737 0.597377 CTTTTCTTGTGCGGGGTTGC 60.597 55.0 0.00 0.0 0.00 4.17 F
1040 1128 0.821711 TCCCCACCAAGAAAAGCACG 60.822 55.0 0.00 0.0 0.00 5.34 F
1842 2105 0.321564 TGTTGAAGGTGATCGGCCAG 60.322 55.0 2.24 0.0 0.00 4.85 F
2476 2765 0.317770 CTGCATTCGCACCGTGTTTT 60.318 50.0 0.00 0.0 45.36 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 2086 0.321564 CTGGCCGATCACCTTCAACA 60.322 55.000 0.00 0.0 0.00 3.33 R
1835 2098 2.037641 CCAATATGATGAGACTGGCCGA 59.962 50.000 0.00 0.0 0.00 5.54 R
1902 2165 2.259012 TCTAACCCCCTGCTACGAAAA 58.741 47.619 0.00 0.0 0.00 2.29 R
3050 3627 0.109342 CCAGGTTGTCTCTTGCCTGT 59.891 55.000 8.39 0.0 45.08 4.00 R
4072 4890 0.326264 GCATCTGTTGGACCTCACCT 59.674 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.686800 GGCATGGGTGGCTTTGGAT 60.687 57.895 0.00 0.00 46.64 3.41
144 154 0.684535 TGTCTTTCGATGTGCCTCCA 59.315 50.000 0.00 0.00 0.00 3.86
182 192 3.340814 AGATGCCGTTGAAGATCTTGT 57.659 42.857 14.00 0.00 0.00 3.16
209 219 0.388649 GTCGGAGCTTCACGTGATGT 60.389 55.000 26.48 16.30 0.00 3.06
235 245 3.169099 CGTGATGAGGATAGGGAGGAAT 58.831 50.000 0.00 0.00 0.00 3.01
468 547 5.592282 TCAAACTCATTTTGTGGCTAAGTCA 59.408 36.000 0.00 0.00 44.47 3.41
535 616 1.101635 TATAGCGCGACTGCTGGAGT 61.102 55.000 12.10 0.00 46.70 3.85
632 713 2.935201 CTGTTGGAGATGCTCTAACTGC 59.065 50.000 19.61 0.67 46.98 4.40
633 714 2.284190 GTTGGAGATGCTCTAACTGCC 58.716 52.381 14.07 0.00 44.69 4.85
634 715 1.871418 TGGAGATGCTCTAACTGCCT 58.129 50.000 0.00 0.00 0.00 4.75
635 716 3.032265 TGGAGATGCTCTAACTGCCTA 57.968 47.619 0.00 0.00 0.00 3.93
636 717 3.581101 TGGAGATGCTCTAACTGCCTAT 58.419 45.455 0.00 0.00 0.00 2.57
637 718 3.576118 TGGAGATGCTCTAACTGCCTATC 59.424 47.826 0.00 0.00 0.00 2.08
638 719 3.831911 GGAGATGCTCTAACTGCCTATCT 59.168 47.826 0.00 0.00 0.00 1.98
639 720 4.283212 GGAGATGCTCTAACTGCCTATCTT 59.717 45.833 0.00 0.00 0.00 2.40
640 721 5.221621 GGAGATGCTCTAACTGCCTATCTTT 60.222 44.000 0.00 0.00 0.00 2.52
641 722 6.245890 AGATGCTCTAACTGCCTATCTTTT 57.754 37.500 0.00 0.00 0.00 2.27
642 723 6.287525 AGATGCTCTAACTGCCTATCTTTTC 58.712 40.000 0.00 0.00 0.00 2.29
643 724 5.683876 TGCTCTAACTGCCTATCTTTTCT 57.316 39.130 0.00 0.00 0.00 2.52
644 725 6.054860 TGCTCTAACTGCCTATCTTTTCTT 57.945 37.500 0.00 0.00 0.00 2.52
645 726 5.877012 TGCTCTAACTGCCTATCTTTTCTTG 59.123 40.000 0.00 0.00 0.00 3.02
646 727 5.877564 GCTCTAACTGCCTATCTTTTCTTGT 59.122 40.000 0.00 0.00 0.00 3.16
647 728 6.183360 GCTCTAACTGCCTATCTTTTCTTGTG 60.183 42.308 0.00 0.00 0.00 3.33
648 729 4.773323 AACTGCCTATCTTTTCTTGTGC 57.227 40.909 0.00 0.00 0.00 4.57
649 730 2.744202 ACTGCCTATCTTTTCTTGTGCG 59.256 45.455 0.00 0.00 0.00 5.34
650 731 2.083774 TGCCTATCTTTTCTTGTGCGG 58.916 47.619 0.00 0.00 0.00 5.69
651 732 1.401905 GCCTATCTTTTCTTGTGCGGG 59.598 52.381 0.00 0.00 0.00 6.13
652 733 2.017049 CCTATCTTTTCTTGTGCGGGG 58.983 52.381 0.00 0.00 0.00 5.73
653 734 2.618045 CCTATCTTTTCTTGTGCGGGGT 60.618 50.000 0.00 0.00 0.00 4.95
654 735 1.995376 ATCTTTTCTTGTGCGGGGTT 58.005 45.000 0.00 0.00 0.00 4.11
655 736 1.028905 TCTTTTCTTGTGCGGGGTTG 58.971 50.000 0.00 0.00 0.00 3.77
656 737 0.597377 CTTTTCTTGTGCGGGGTTGC 60.597 55.000 0.00 0.00 0.00 4.17
657 738 1.323271 TTTTCTTGTGCGGGGTTGCA 61.323 50.000 0.00 0.00 43.95 4.08
663 744 4.189539 TGCGGGGTTGCAAGAAAT 57.810 50.000 0.00 0.00 43.02 2.17
664 745 3.348151 TGCGGGGTTGCAAGAAATA 57.652 47.368 0.00 0.00 43.02 1.40
665 746 1.621992 TGCGGGGTTGCAAGAAATAA 58.378 45.000 0.00 0.00 43.02 1.40
666 747 1.543802 TGCGGGGTTGCAAGAAATAAG 59.456 47.619 0.00 0.00 43.02 1.73
667 748 1.544246 GCGGGGTTGCAAGAAATAAGT 59.456 47.619 0.00 0.00 34.15 2.24
668 749 2.750712 GCGGGGTTGCAAGAAATAAGTA 59.249 45.455 0.00 0.00 34.15 2.24
669 750 3.191791 GCGGGGTTGCAAGAAATAAGTAA 59.808 43.478 0.00 0.00 34.15 2.24
670 751 4.729595 CGGGGTTGCAAGAAATAAGTAAC 58.270 43.478 0.00 0.00 0.00 2.50
671 752 4.457949 CGGGGTTGCAAGAAATAAGTAACT 59.542 41.667 0.00 0.00 0.00 2.24
672 753 5.048294 CGGGGTTGCAAGAAATAAGTAACTT 60.048 40.000 0.00 0.00 0.00 2.66
673 754 6.156519 GGGGTTGCAAGAAATAAGTAACTTG 58.843 40.000 0.00 0.00 41.46 3.16
674 755 6.015772 GGGGTTGCAAGAAATAAGTAACTTGA 60.016 38.462 0.00 0.00 41.16 3.02
675 756 7.309805 GGGGTTGCAAGAAATAAGTAACTTGAT 60.310 37.037 0.00 0.00 41.16 2.57
676 757 7.542130 GGGTTGCAAGAAATAAGTAACTTGATG 59.458 37.037 0.00 0.00 41.16 3.07
677 758 8.296713 GGTTGCAAGAAATAAGTAACTTGATGA 58.703 33.333 0.00 0.00 41.16 2.92
678 759 9.677567 GTTGCAAGAAATAAGTAACTTGATGAA 57.322 29.630 0.00 0.00 41.16 2.57
679 760 9.897744 TTGCAAGAAATAAGTAACTTGATGAAG 57.102 29.630 0.00 0.00 41.16 3.02
680 761 8.023128 TGCAAGAAATAAGTAACTTGATGAAGC 58.977 33.333 0.00 0.00 41.16 3.86
681 762 8.023128 GCAAGAAATAAGTAACTTGATGAAGCA 58.977 33.333 0.00 0.00 41.16 3.91
682 763 9.897744 CAAGAAATAAGTAACTTGATGAAGCAA 57.102 29.630 0.00 0.00 41.16 3.91
695 776 8.807667 CTTGATGAAGCAAGTTTACAATTTCT 57.192 30.769 0.13 0.00 40.22 2.52
696 777 9.897744 CTTGATGAAGCAAGTTTACAATTTCTA 57.102 29.630 0.13 0.00 40.22 2.10
736 817 8.257306 TCCTCAAAATAAATCCAACAATAAGGC 58.743 33.333 0.00 0.00 0.00 4.35
744 825 6.625532 AATCCAACAATAAGGCCTCAAATT 57.374 33.333 5.23 3.67 0.00 1.82
749 830 6.458210 CAACAATAAGGCCTCAAATTTGACT 58.542 36.000 16.91 10.05 32.90 3.41
753 834 1.615392 AGGCCTCAAATTTGACTGTGC 59.385 47.619 16.91 15.34 32.90 4.57
795 876 5.362430 TGCAGTGGGTATGTCTTTTTCTTTT 59.638 36.000 0.00 0.00 0.00 2.27
796 877 5.920840 GCAGTGGGTATGTCTTTTTCTTTTC 59.079 40.000 0.00 0.00 0.00 2.29
799 880 7.978975 CAGTGGGTATGTCTTTTTCTTTTCAAA 59.021 33.333 0.00 0.00 0.00 2.69
982 1067 1.069775 TAAACCCTCAACCTCCACCC 58.930 55.000 0.00 0.00 0.00 4.61
983 1068 1.726192 AAACCCTCAACCTCCACCCC 61.726 60.000 0.00 0.00 0.00 4.95
985 1070 2.531685 CCTCAACCTCCACCCCCA 60.532 66.667 0.00 0.00 0.00 4.96
986 1071 2.757077 CTCAACCTCCACCCCCAC 59.243 66.667 0.00 0.00 0.00 4.61
987 1072 2.856988 TCAACCTCCACCCCCACC 60.857 66.667 0.00 0.00 0.00 4.61
988 1073 2.858974 CAACCTCCACCCCCACCT 60.859 66.667 0.00 0.00 0.00 4.00
1040 1128 0.821711 TCCCCACCAAGAAAAGCACG 60.822 55.000 0.00 0.00 0.00 5.34
1365 1459 1.066716 CACGGAATCTCGGGTTGGTTA 60.067 52.381 0.00 0.00 0.00 2.85
1477 1632 4.927782 TCCAGTTGCGCCGCAGTT 62.928 61.111 13.13 1.04 40.61 3.16
1506 1661 3.898482 AGTTGTTTTAGCTGTTCCAGGT 58.102 40.909 0.00 1.28 44.66 4.00
1516 1671 4.770795 AGCTGTTCCAGGTACATGATTAC 58.229 43.478 9.54 4.57 40.59 1.89
1577 1732 6.399639 TGATTGGGGTTCTTTTTAACTCAC 57.600 37.500 0.00 0.00 31.01 3.51
1597 1752 4.115516 CACGGTACAGATTTGAGATGGAG 58.884 47.826 0.00 0.00 0.00 3.86
1598 1753 3.126831 CGGTACAGATTTGAGATGGAGC 58.873 50.000 0.00 0.00 0.00 4.70
1604 1759 2.102252 AGATTTGAGATGGAGCGACCTC 59.898 50.000 4.77 0.00 39.86 3.85
1650 1808 9.982651 TGCTAGATATGTAGGAATTTCAGTAAC 57.017 33.333 8.83 0.00 0.00 2.50
1654 1812 4.210724 TGTAGGAATTTCAGTAACCCCG 57.789 45.455 0.00 0.00 0.00 5.73
1724 1987 9.139174 GGTGATAATTTTGTAATGTTTGTCCTG 57.861 33.333 0.00 0.00 0.00 3.86
1799 2062 2.579100 TGGGACATTATTGGGAAGGGA 58.421 47.619 0.00 0.00 0.00 4.20
1802 2065 4.202836 TGGGACATTATTGGGAAGGGAAAA 60.203 41.667 0.00 0.00 0.00 2.29
1814 2077 3.118992 GGAAGGGAAAAGATGCATGGTTC 60.119 47.826 2.46 4.45 0.00 3.62
1823 2086 6.594788 AAAGATGCATGGTTCACACTAATT 57.405 33.333 2.46 0.00 0.00 1.40
1835 2098 6.016276 GGTTCACACTAATTGTTGAAGGTGAT 60.016 38.462 0.00 0.00 35.67 3.06
1842 2105 0.321564 TGTTGAAGGTGATCGGCCAG 60.322 55.000 2.24 0.00 0.00 4.85
1902 2165 6.459670 TGAAACATGCTGATATGCTTGATT 57.540 33.333 8.89 4.08 39.50 2.57
1942 2206 1.237285 AACACCAATGCTGACGCCTC 61.237 55.000 0.00 0.00 34.43 4.70
2027 2291 0.739561 ATAGGCGACGGACTCAAGAC 59.260 55.000 0.00 0.00 30.49 3.01
2205 2475 7.417496 ACTTAAGACCGTCTTTGTTTGTATC 57.583 36.000 18.73 0.00 37.89 2.24
2303 2582 5.243507 TGGAAATCAAACTGCAGCTATTTGA 59.756 36.000 24.71 24.71 44.18 2.69
2380 2667 7.473735 TGAAAATGCCATATTCACCAAGTTA 57.526 32.000 0.00 0.00 0.00 2.24
2431 2718 3.272766 GCCACTGGCTTTCACAAAC 57.727 52.632 13.28 0.00 46.69 2.93
2476 2765 0.317770 CTGCATTCGCACCGTGTTTT 60.318 50.000 0.00 0.00 45.36 2.43
2479 2768 0.502275 CATTCGCACCGTGTTTTTGC 59.498 50.000 0.00 0.00 0.00 3.68
2613 2914 6.014327 AGCCAGTGATTTGGATAATTGTTTGT 60.014 34.615 0.00 0.00 40.87 2.83
2639 2940 5.240623 TGACATGTCAACAAATACTTGGGAC 59.759 40.000 26.02 4.62 39.51 4.46
2701 3020 7.780745 CAGATCCTAATATATACTCCCTCCGTT 59.219 40.741 0.00 0.00 0.00 4.44
2704 3023 6.219146 TCCTAATATATACTCCCTCCGTTCCT 59.781 42.308 0.00 0.00 0.00 3.36
2705 3024 7.407033 TCCTAATATATACTCCCTCCGTTCCTA 59.593 40.741 0.00 0.00 0.00 2.94
2711 3030 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
2712 3031 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2714 3033 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2715 3034 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2716 3035 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2717 3036 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2735 3054 9.971922 ATTTGTCTTTTTAGAGATTTCAACTGG 57.028 29.630 0.00 0.00 0.00 4.00
2737 3056 8.154649 TGTCTTTTTAGAGATTTCAACTGGAC 57.845 34.615 0.00 0.00 0.00 4.02
2738 3057 7.993183 TGTCTTTTTAGAGATTTCAACTGGACT 59.007 33.333 0.00 0.00 0.00 3.85
2741 3060 8.617290 TTTTTAGAGATTTCAACTGGACTACC 57.383 34.615 0.00 0.00 0.00 3.18
2742 3061 6.928348 TTAGAGATTTCAACTGGACTACCA 57.072 37.500 0.00 0.00 44.76 3.25
2743 3062 5.153950 AGAGATTTCAACTGGACTACCAC 57.846 43.478 0.00 0.00 41.77 4.16
2744 3063 4.593206 AGAGATTTCAACTGGACTACCACA 59.407 41.667 0.00 0.00 41.77 4.17
2746 3065 6.440647 AGAGATTTCAACTGGACTACCACATA 59.559 38.462 0.00 0.00 41.77 2.29
2747 3066 6.407202 AGATTTCAACTGGACTACCACATAC 58.593 40.000 0.00 0.00 41.77 2.39
2748 3067 3.861276 TCAACTGGACTACCACATACG 57.139 47.619 0.00 0.00 41.77 3.06
2749 3068 2.494471 TCAACTGGACTACCACATACGG 59.506 50.000 0.00 0.00 41.77 4.02
2750 3069 2.494471 CAACTGGACTACCACATACGGA 59.506 50.000 0.00 0.00 41.77 4.69
2751 3070 3.028094 ACTGGACTACCACATACGGAT 57.972 47.619 0.00 0.00 41.77 4.18
2752 3071 2.693591 ACTGGACTACCACATACGGATG 59.306 50.000 5.94 5.94 41.77 3.51
2754 3073 3.887110 CTGGACTACCACATACGGATGTA 59.113 47.826 14.23 0.00 44.82 2.29
2755 3074 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2756 3075 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
2757 3076 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
2758 3077 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
2759 3078 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
2760 3079 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
2761 3080 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2762 3081 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2763 3082 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2765 3084 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2792 3111 6.351327 AGAGCGTAGATTTACTCATTTTGC 57.649 37.500 0.00 0.00 0.00 3.68
2793 3112 6.109359 AGAGCGTAGATTTACTCATTTTGCT 58.891 36.000 0.00 0.00 0.00 3.91
2794 3113 6.256757 AGAGCGTAGATTTACTCATTTTGCTC 59.743 38.462 8.30 8.30 43.06 4.26
2795 3114 5.294552 AGCGTAGATTTACTCATTTTGCTCC 59.705 40.000 0.00 0.00 0.00 4.70
2796 3115 5.728255 CGTAGATTTACTCATTTTGCTCCG 58.272 41.667 0.00 0.00 0.00 4.63
2797 3116 5.291128 CGTAGATTTACTCATTTTGCTCCGT 59.709 40.000 0.00 0.00 0.00 4.69
2798 3117 6.474427 CGTAGATTTACTCATTTTGCTCCGTA 59.526 38.462 0.00 0.00 0.00 4.02
2799 3118 7.169308 CGTAGATTTACTCATTTTGCTCCGTAT 59.831 37.037 0.00 0.00 0.00 3.06
2800 3119 7.251704 AGATTTACTCATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
2801 3120 6.823689 AGATTTACTCATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
2802 3121 7.985184 AGATTTACTCATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
2803 3122 7.534085 TTTACTCATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
2804 3123 5.086104 ACTCATTTTGCTCCGTATGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
2805 3124 5.109903 ACTCATTTTGCTCCGTATGTAGTC 58.890 41.667 0.00 0.00 0.00 2.59
2806 3125 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2807 3126 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2808 3127 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2809 3128 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2810 3129 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2811 3130 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2812 3131 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2813 3132 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2814 3133 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2815 3134 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2816 3135 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2817 3136 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2818 3137 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2819 3138 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2820 3139 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2821 3140 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2822 3141 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2823 3142 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2824 3143 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2825 3144 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2826 3145 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2827 3146 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2828 3147 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2829 3148 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2830 3149 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2831 3150 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2965 3284 9.965902 AATGTTTGTCCCTCCATTATCTATATC 57.034 33.333 0.00 0.00 0.00 1.63
2966 3285 8.504811 TGTTTGTCCCTCCATTATCTATATCA 57.495 34.615 0.00 0.00 0.00 2.15
2967 3286 8.944138 TGTTTGTCCCTCCATTATCTATATCAA 58.056 33.333 0.00 0.00 0.00 2.57
3000 3577 7.001073 GGGAGGTTGAAAATAAGCATAGATCT 58.999 38.462 0.00 0.00 0.00 2.75
3050 3627 1.005097 ACTGCCTGCTGAATCCATGAA 59.995 47.619 0.00 0.00 0.00 2.57
3092 3669 3.681897 CGAACTGAAACATCTTAGCAGCT 59.318 43.478 0.00 0.00 0.00 4.24
3110 3687 4.157472 GCAGCTAGAGGAAAAGAAAGCATT 59.843 41.667 0.00 0.00 32.42 3.56
3126 3703 2.306512 AGCATTTAACAGGGGAACGGTA 59.693 45.455 0.00 0.00 0.00 4.02
3160 3737 7.218228 TCACAAACAACTGAGCATGATAAAT 57.782 32.000 0.00 0.00 0.00 1.40
3264 3841 6.116711 TCTACACTTTGCAGGGTTACATAA 57.883 37.500 0.00 0.00 37.94 1.90
3346 3925 4.437239 AGATAACAGGCAGCATATATCGC 58.563 43.478 0.00 0.48 0.00 4.58
3350 3929 2.093216 GGCAGCATATATCGCCAGC 58.907 57.895 10.98 10.85 44.25 4.85
3351 3930 1.699656 GGCAGCATATATCGCCAGCG 61.700 60.000 5.50 5.50 44.25 5.18
3352 3931 1.712081 CAGCATATATCGCCAGCGC 59.288 57.895 7.27 0.00 39.59 5.92
3353 3932 1.015607 CAGCATATATCGCCAGCGCA 61.016 55.000 11.47 0.00 39.59 6.09
3364 3943 1.321148 CGCCAGCGCAAAATTATTGTG 59.679 47.619 11.47 0.00 34.03 3.33
3391 3970 1.865865 CACCCTGGTGCGTATGTATC 58.134 55.000 2.89 0.00 39.39 2.24
3395 3974 3.154710 CCCTGGTGCGTATGTATCTCTA 58.845 50.000 0.00 0.00 0.00 2.43
3397 3976 4.547532 CCTGGTGCGTATGTATCTCTAAC 58.452 47.826 0.00 0.00 0.00 2.34
3398 3977 4.547532 CTGGTGCGTATGTATCTCTAACC 58.452 47.826 0.00 0.00 0.00 2.85
3399 3978 4.212716 TGGTGCGTATGTATCTCTAACCT 58.787 43.478 0.00 0.00 0.00 3.50
3400 3979 4.037565 TGGTGCGTATGTATCTCTAACCTG 59.962 45.833 0.00 0.00 0.00 4.00
3401 3980 4.277672 GGTGCGTATGTATCTCTAACCTGA 59.722 45.833 0.00 0.00 0.00 3.86
3402 3981 5.453648 GTGCGTATGTATCTCTAACCTGAG 58.546 45.833 0.00 0.00 35.52 3.35
3403 3982 5.238868 GTGCGTATGTATCTCTAACCTGAGA 59.761 44.000 0.00 0.00 45.71 3.27
3418 3997 8.055790 TCTAACCTGAGAGAGATGTATTCTTCA 58.944 37.037 0.00 0.00 33.74 3.02
3609 4188 7.016153 AGTCCACCATTAACATGAAGTAGAA 57.984 36.000 0.00 0.00 31.07 2.10
3633 4221 7.277174 AGAATCGGAAACTTTCAAATTGTCT 57.723 32.000 3.93 0.00 0.00 3.41
3641 4229 4.461198 ACTTTCAAATTGTCTCCCGACTT 58.539 39.130 0.00 0.00 40.86 3.01
3653 4241 2.035632 TCCCGACTTGTTTTTGCCATT 58.964 42.857 0.00 0.00 0.00 3.16
3668 4256 5.818136 TTGCCATTGTTAGCTGAATCTAC 57.182 39.130 0.00 0.00 0.00 2.59
3704 4292 4.143030 GCAACACTAGTGTAACATGAGCAG 60.143 45.833 28.13 9.46 44.13 4.24
3756 4373 5.627499 TTTTTGCTGAGAGATTAATGCGT 57.373 34.783 0.00 0.00 0.00 5.24
3757 4374 4.864916 TTTGCTGAGAGATTAATGCGTC 57.135 40.909 0.00 0.00 0.00 5.19
3758 4375 3.808466 TGCTGAGAGATTAATGCGTCT 57.192 42.857 0.00 0.00 0.00 4.18
3759 4376 3.451526 TGCTGAGAGATTAATGCGTCTG 58.548 45.455 0.00 0.00 0.00 3.51
3760 4377 3.131046 TGCTGAGAGATTAATGCGTCTGA 59.869 43.478 0.00 0.00 0.00 3.27
3761 4378 4.115516 GCTGAGAGATTAATGCGTCTGAA 58.884 43.478 0.00 0.00 0.00 3.02
3762 4379 4.749099 GCTGAGAGATTAATGCGTCTGAAT 59.251 41.667 0.00 0.00 0.00 2.57
3763 4380 5.333187 GCTGAGAGATTAATGCGTCTGAATG 60.333 44.000 0.00 0.00 0.00 2.67
3764 4381 5.052481 TGAGAGATTAATGCGTCTGAATGG 58.948 41.667 0.00 0.00 0.00 3.16
3765 4382 3.812053 AGAGATTAATGCGTCTGAATGGC 59.188 43.478 0.00 0.00 0.00 4.40
3891 4510 3.278574 GCAATGTAGCCATGTAGGTGAA 58.721 45.455 0.00 0.00 40.61 3.18
3975 4623 6.419980 TCAAATGTTTCAAGCAAACCAAAG 57.580 33.333 0.00 0.00 43.52 2.77
3991 4639 7.566868 GCAAACCAAAGAAATTTCGACATGTAC 60.567 37.037 12.42 0.00 0.00 2.90
3992 4640 5.685841 ACCAAAGAAATTTCGACATGTACG 58.314 37.500 12.42 4.78 0.00 3.67
3994 4642 6.424509 ACCAAAGAAATTTCGACATGTACGTA 59.575 34.615 12.42 0.00 0.00 3.57
3995 4643 7.041916 ACCAAAGAAATTTCGACATGTACGTAA 60.042 33.333 12.42 5.35 0.00 3.18
3996 4644 7.799447 CCAAAGAAATTTCGACATGTACGTAAA 59.201 33.333 12.42 7.75 0.00 2.01
3997 4645 8.615585 CAAAGAAATTTCGACATGTACGTAAAC 58.384 33.333 12.42 0.00 0.00 2.01
3998 4646 7.647907 AGAAATTTCGACATGTACGTAAACT 57.352 32.000 12.42 4.35 0.00 2.66
4000 4648 8.553696 AGAAATTTCGACATGTACGTAAACTTT 58.446 29.630 12.42 3.92 0.00 2.66
4001 4649 9.161684 GAAATTTCGACATGTACGTAAACTTTT 57.838 29.630 0.00 3.31 0.00 2.27
4002 4650 8.483743 AATTTCGACATGTACGTAAACTTTTG 57.516 30.769 0.00 0.00 0.00 2.44
4003 4651 6.586868 TTCGACATGTACGTAAACTTTTGT 57.413 33.333 0.00 0.00 0.00 2.83
4004 4652 7.691430 TTCGACATGTACGTAAACTTTTGTA 57.309 32.000 0.00 0.00 0.00 2.41
4063 4870 0.868406 GAAACCCAACTCAGTCAGCG 59.132 55.000 0.00 0.00 0.00 5.18
4068 4886 3.616721 AACTCAGTCAGCGGCGGT 61.617 61.111 5.44 5.44 0.00 5.68
4070 4888 3.753434 CTCAGTCAGCGGCGGTCT 61.753 66.667 9.40 0.46 0.00 3.85
4071 4889 3.978723 CTCAGTCAGCGGCGGTCTG 62.979 68.421 18.30 18.30 0.00 3.51
4072 4890 4.056125 CAGTCAGCGGCGGTCTGA 62.056 66.667 19.28 15.86 38.16 3.27
4073 4891 3.753434 AGTCAGCGGCGGTCTGAG 61.753 66.667 15.89 2.77 40.82 3.35
4074 4892 4.803426 GTCAGCGGCGGTCTGAGG 62.803 72.222 15.89 2.40 40.82 3.86
4719 5550 3.423154 CTTGTTCGGTCAGGCGGC 61.423 66.667 0.00 0.00 0.00 6.53
4720 5551 3.883744 CTTGTTCGGTCAGGCGGCT 62.884 63.158 5.25 5.25 0.00 5.52
4743 5574 0.669318 GTGTTCGGCTCGATGGTTGA 60.669 55.000 0.00 0.00 35.23 3.18
4792 5623 0.396435 TGATCAGTTTCCTGCCGTGT 59.604 50.000 0.00 0.00 38.66 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.551413 AAAGCCACCCATGCCTCCT 61.551 57.895 0.00 0.00 0.00 3.69
37 38 1.676678 GCCATAGCGTCAGAGGGTGA 61.677 60.000 5.06 0.00 0.00 4.02
144 154 3.507162 TCTTCATGGGAATGTGTGTGT 57.493 42.857 0.00 0.00 31.34 3.72
182 192 1.006571 GAAGCTCCGACGGTGTTGA 60.007 57.895 14.79 0.00 0.00 3.18
209 219 1.620323 CCCTATCCTCATCACGCATCA 59.380 52.381 0.00 0.00 0.00 3.07
235 245 1.699730 TCCGCCTCCGAAGATGAATA 58.300 50.000 0.00 0.00 36.29 1.75
468 547 1.795962 GCAAAAATACAGCGCGCGT 60.796 52.632 32.35 26.73 0.00 6.01
632 713 2.017049 CCCCGCACAAGAAAAGATAGG 58.983 52.381 0.00 0.00 0.00 2.57
633 714 2.711542 ACCCCGCACAAGAAAAGATAG 58.288 47.619 0.00 0.00 0.00 2.08
634 715 2.817258 CAACCCCGCACAAGAAAAGATA 59.183 45.455 0.00 0.00 0.00 1.98
635 716 1.613437 CAACCCCGCACAAGAAAAGAT 59.387 47.619 0.00 0.00 0.00 2.40
636 717 1.028905 CAACCCCGCACAAGAAAAGA 58.971 50.000 0.00 0.00 0.00 2.52
637 718 0.597377 GCAACCCCGCACAAGAAAAG 60.597 55.000 0.00 0.00 0.00 2.27
638 719 1.323271 TGCAACCCCGCACAAGAAAA 61.323 50.000 0.00 0.00 36.86 2.29
639 720 1.323271 TTGCAACCCCGCACAAGAAA 61.323 50.000 0.00 0.00 42.87 2.52
640 721 1.733402 CTTGCAACCCCGCACAAGAA 61.733 55.000 0.00 0.00 42.87 2.52
641 722 2.124109 TTGCAACCCCGCACAAGA 60.124 55.556 0.00 0.00 42.87 3.02
642 723 1.733402 TTCTTGCAACCCCGCACAAG 61.733 55.000 0.00 0.00 42.87 3.16
643 724 1.323271 TTTCTTGCAACCCCGCACAA 61.323 50.000 0.00 0.00 42.87 3.33
644 725 1.112315 ATTTCTTGCAACCCCGCACA 61.112 50.000 0.00 0.00 42.87 4.57
645 726 0.885196 TATTTCTTGCAACCCCGCAC 59.115 50.000 0.00 0.00 42.87 5.34
646 727 1.543802 CTTATTTCTTGCAACCCCGCA 59.456 47.619 0.00 0.00 41.03 5.69
647 728 1.544246 ACTTATTTCTTGCAACCCCGC 59.456 47.619 0.00 0.00 0.00 6.13
648 729 4.457949 AGTTACTTATTTCTTGCAACCCCG 59.542 41.667 0.00 0.00 0.00 5.73
649 730 5.977489 AGTTACTTATTTCTTGCAACCCC 57.023 39.130 0.00 0.00 0.00 4.95
650 731 6.977213 TCAAGTTACTTATTTCTTGCAACCC 58.023 36.000 0.00 0.00 37.68 4.11
651 732 8.296713 TCATCAAGTTACTTATTTCTTGCAACC 58.703 33.333 0.00 0.00 37.68 3.77
652 733 9.677567 TTCATCAAGTTACTTATTTCTTGCAAC 57.322 29.630 0.00 0.00 37.68 4.17
653 734 9.897744 CTTCATCAAGTTACTTATTTCTTGCAA 57.102 29.630 0.00 0.00 37.68 4.08
654 735 8.023128 GCTTCATCAAGTTACTTATTTCTTGCA 58.977 33.333 0.00 0.00 37.68 4.08
655 736 8.023128 TGCTTCATCAAGTTACTTATTTCTTGC 58.977 33.333 0.00 0.00 37.68 4.01
656 737 9.897744 TTGCTTCATCAAGTTACTTATTTCTTG 57.102 29.630 0.00 0.00 38.69 3.02
670 751 8.807667 AGAAATTGTAAACTTGCTTCATCAAG 57.192 30.769 2.33 2.33 46.57 3.02
709 790 9.586435 CCTTATTGTTGGATTTATTTTGAGGAC 57.414 33.333 0.00 0.00 0.00 3.85
711 792 7.495606 GGCCTTATTGTTGGATTTATTTTGAGG 59.504 37.037 0.00 0.00 0.00 3.86
716 797 7.732222 TGAGGCCTTATTGTTGGATTTATTT 57.268 32.000 6.77 0.00 0.00 1.40
736 817 1.001487 TGCGCACAGTCAAATTTGAGG 60.001 47.619 21.05 17.52 37.98 3.86
744 825 1.465777 CAAGATGATGCGCACAGTCAA 59.534 47.619 14.90 0.00 0.00 3.18
803 884 8.611757 CCTGTTTTTGGAATTAAGGAAAAACTG 58.388 33.333 15.87 14.94 43.72 3.16
805 886 7.414436 GCCTGTTTTTGGAATTAAGGAAAAAC 58.586 34.615 0.00 0.00 43.67 2.43
806 887 6.258947 CGCCTGTTTTTGGAATTAAGGAAAAA 59.741 34.615 0.00 0.00 0.00 1.94
810 891 4.145807 TCGCCTGTTTTTGGAATTAAGGA 58.854 39.130 0.00 0.00 0.00 3.36
811 892 4.513198 TCGCCTGTTTTTGGAATTAAGG 57.487 40.909 0.00 0.00 0.00 2.69
812 893 5.469479 ACATCGCCTGTTTTTGGAATTAAG 58.531 37.500 0.00 0.00 32.90 1.85
982 1067 3.400054 GGAAGGGGACGAGGTGGG 61.400 72.222 0.00 0.00 0.00 4.61
983 1068 3.771160 CGGAAGGGGACGAGGTGG 61.771 72.222 0.00 0.00 0.00 4.61
985 1070 2.679287 GTCGGAAGGGGACGAGGT 60.679 66.667 0.00 0.00 40.09 3.85
986 1071 2.362632 AGTCGGAAGGGGACGAGG 60.363 66.667 0.00 0.00 40.09 4.63
987 1072 2.762234 CGAGTCGGAAGGGGACGAG 61.762 68.421 4.10 0.00 40.09 4.18
988 1073 2.749044 CGAGTCGGAAGGGGACGA 60.749 66.667 4.10 0.00 39.38 4.20
1040 1128 1.594564 GGTCGGCTATTTCTCGGCC 60.595 63.158 0.00 0.00 41.47 6.13
1086 1175 4.821589 CCGGCTCGGCTTGAGGAC 62.822 72.222 8.29 0.00 45.38 3.85
1097 1186 2.027625 CACGACTTGGTTCCGGCTC 61.028 63.158 0.00 0.00 0.00 4.70
1110 1199 0.802607 GGTCCATCGAGCTTCACGAC 60.803 60.000 0.00 0.00 42.37 4.34
1328 1421 1.816074 GTGAACAGGCAACGGGATTA 58.184 50.000 0.00 0.00 46.39 1.75
1365 1459 0.909623 ACAAATCGACGAATCCCCCT 59.090 50.000 0.00 0.00 0.00 4.79
1477 1632 6.293955 GGAACAGCTAAAACAACTAGCATTGA 60.294 38.462 4.79 0.00 43.55 2.57
1506 1661 7.147391 ACAACCCATGTATCCAGTAATCATGTA 60.147 37.037 0.00 0.00 41.63 2.29
1516 1671 6.122277 ACATTAGAACAACCCATGTATCCAG 58.878 40.000 0.00 0.00 42.99 3.86
1524 1679 6.603201 CCATGAACTACATTAGAACAACCCAT 59.397 38.462 0.00 0.00 37.07 4.00
1577 1732 3.126831 GCTCCATCTCAAATCTGTACCG 58.873 50.000 0.00 0.00 0.00 4.02
1597 1752 1.971695 CCCCCAAAGTTGAGGTCGC 60.972 63.158 0.00 0.00 0.00 5.19
1598 1753 0.328258 ATCCCCCAAAGTTGAGGTCG 59.672 55.000 0.00 0.00 0.00 4.79
1604 1759 2.493278 CAGCTACAATCCCCCAAAGTTG 59.507 50.000 0.00 0.00 0.00 3.16
1650 1808 0.974010 TACTTGCTCCACTACCGGGG 60.974 60.000 6.32 0.00 0.00 5.73
1724 1987 9.230932 GAGCAATGCTAAGAAAATTACAGAATC 57.769 33.333 8.12 0.00 39.88 2.52
1799 2062 6.594788 ATTAGTGTGAACCATGCATCTTTT 57.405 33.333 0.00 0.00 0.00 2.27
1802 2065 5.012239 ACAATTAGTGTGAACCATGCATCT 58.988 37.500 0.00 0.00 39.72 2.90
1814 2077 5.390885 CCGATCACCTTCAACAATTAGTGTG 60.391 44.000 0.00 0.00 40.60 3.82
1823 2086 0.321564 CTGGCCGATCACCTTCAACA 60.322 55.000 0.00 0.00 0.00 3.33
1835 2098 2.037641 CCAATATGATGAGACTGGCCGA 59.962 50.000 0.00 0.00 0.00 5.54
1842 2105 3.652869 TCCCCTTCCCAATATGATGAGAC 59.347 47.826 0.00 0.00 0.00 3.36
1902 2165 2.259012 TCTAACCCCCTGCTACGAAAA 58.741 47.619 0.00 0.00 0.00 2.29
1942 2206 6.620678 TCGCCAGAGAAAAATAAATCCAAAG 58.379 36.000 0.00 0.00 0.00 2.77
2192 2462 5.992829 TGGCTAAACTCGATACAAACAAAGA 59.007 36.000 0.00 0.00 0.00 2.52
2205 2475 6.709643 CAAGAAATGATAGTGGCTAAACTCG 58.290 40.000 0.00 0.00 0.00 4.18
2476 2765 7.576861 ACATCATCAACAGATAATCATGCAA 57.423 32.000 0.00 0.00 0.00 4.08
2613 2914 5.009510 CCCAAGTATTTGTTGACATGTCACA 59.990 40.000 27.88 23.32 39.66 3.58
2639 2940 4.337555 CCTATCCTGGTGCAAAGAGATTTG 59.662 45.833 0.00 0.00 35.15 2.32
2711 3030 8.621286 GTCCAGTTGAAATCTCTAAAAAGACAA 58.379 33.333 0.00 0.00 0.00 3.18
2712 3031 7.993183 AGTCCAGTTGAAATCTCTAAAAAGACA 59.007 33.333 0.00 0.00 0.00 3.41
2714 3033 9.490379 GTAGTCCAGTTGAAATCTCTAAAAAGA 57.510 33.333 0.00 0.00 0.00 2.52
2715 3034 8.722394 GGTAGTCCAGTTGAAATCTCTAAAAAG 58.278 37.037 0.00 0.00 0.00 2.27
2716 3035 8.215050 TGGTAGTCCAGTTGAAATCTCTAAAAA 58.785 33.333 0.00 0.00 39.03 1.94
2717 3036 7.660208 GTGGTAGTCCAGTTGAAATCTCTAAAA 59.340 37.037 0.00 0.00 45.24 1.52
2721 3040 4.593206 TGTGGTAGTCCAGTTGAAATCTCT 59.407 41.667 0.00 0.00 45.24 3.10
2722 3041 4.894784 TGTGGTAGTCCAGTTGAAATCTC 58.105 43.478 0.00 0.00 45.24 2.75
2724 3043 5.291128 CGTATGTGGTAGTCCAGTTGAAATC 59.709 44.000 0.00 0.00 45.24 2.17
2725 3044 5.175859 CGTATGTGGTAGTCCAGTTGAAAT 58.824 41.667 0.00 0.00 45.24 2.17
2726 3045 4.561938 CCGTATGTGGTAGTCCAGTTGAAA 60.562 45.833 0.00 0.00 45.24 2.69
2727 3046 3.056393 CCGTATGTGGTAGTCCAGTTGAA 60.056 47.826 0.00 0.00 45.24 2.69
2729 3048 2.494471 TCCGTATGTGGTAGTCCAGTTG 59.506 50.000 0.00 0.00 45.24 3.16
2730 3049 2.811410 TCCGTATGTGGTAGTCCAGTT 58.189 47.619 0.00 0.00 45.24 3.16
2731 3050 2.519771 TCCGTATGTGGTAGTCCAGT 57.480 50.000 0.00 0.00 45.24 4.00
2732 3051 2.693591 ACATCCGTATGTGGTAGTCCAG 59.306 50.000 0.00 0.00 44.79 3.86
2734 3053 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
2735 3054 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2737 3056 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2766 3085 8.388103 GCAAAATGAGTAAATCTACGCTCTAAA 58.612 33.333 0.00 0.00 32.87 1.85
2767 3086 7.764443 AGCAAAATGAGTAAATCTACGCTCTAA 59.236 33.333 0.00 0.00 32.87 2.10
2768 3087 7.265673 AGCAAAATGAGTAAATCTACGCTCTA 58.734 34.615 0.00 0.00 32.87 2.43
2769 3088 6.109359 AGCAAAATGAGTAAATCTACGCTCT 58.891 36.000 0.00 0.00 32.87 4.09
2770 3089 6.351327 AGCAAAATGAGTAAATCTACGCTC 57.649 37.500 0.00 0.00 32.87 5.03
2771 3090 5.294552 GGAGCAAAATGAGTAAATCTACGCT 59.705 40.000 0.00 0.00 32.87 5.07
2772 3091 5.502606 GGAGCAAAATGAGTAAATCTACGC 58.497 41.667 0.00 0.00 32.87 4.42
2773 3092 5.291128 ACGGAGCAAAATGAGTAAATCTACG 59.709 40.000 0.00 0.00 32.87 3.51
2774 3093 6.663944 ACGGAGCAAAATGAGTAAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
2775 3094 7.985184 ACATACGGAGCAAAATGAGTAAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
2776 3095 6.823689 ACATACGGAGCAAAATGAGTAAATCT 59.176 34.615 0.00 0.00 0.00 2.40
2777 3096 7.016361 ACATACGGAGCAAAATGAGTAAATC 57.984 36.000 0.00 0.00 0.00 2.17
2778 3097 7.769044 ACTACATACGGAGCAAAATGAGTAAAT 59.231 33.333 0.00 0.00 0.00 1.40
2779 3098 7.101054 ACTACATACGGAGCAAAATGAGTAAA 58.899 34.615 0.00 0.00 0.00 2.01
2780 3099 6.636705 ACTACATACGGAGCAAAATGAGTAA 58.363 36.000 0.00 0.00 0.00 2.24
2781 3100 6.127563 TGACTACATACGGAGCAAAATGAGTA 60.128 38.462 0.00 0.00 0.00 2.59
2782 3101 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2783 3102 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2784 3103 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2785 3104 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2786 3105 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2787 3106 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2788 3107 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2789 3108 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2790 3109 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2791 3110 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2792 3111 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2793 3112 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2794 3113 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2795 3114 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2796 3115 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2798 3117 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2799 3118 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2800 3119 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2801 3120 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2802 3121 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2803 3122 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2804 3123 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2805 3124 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2806 3125 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2819 3138 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2820 3139 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2821 3140 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2822 3141 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2823 3142 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2824 3143 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2825 3144 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2826 3145 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2827 3146 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2828 3147 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2829 3148 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2830 3149 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2831 3150 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
2837 3156 5.961897 AGAAATATACTCCCTCCGTTCCTA 58.038 41.667 0.00 0.00 0.00 2.94
2838 3157 4.817286 AGAAATATACTCCCTCCGTTCCT 58.183 43.478 0.00 0.00 0.00 3.36
2841 3160 4.648307 ACGAAGAAATATACTCCCTCCGTT 59.352 41.667 0.00 0.00 0.00 4.44
2939 3258 9.965902 GATATAGATAATGGAGGGACAAACATT 57.034 33.333 0.00 0.00 37.34 2.71
2940 3259 9.116080 TGATATAGATAATGGAGGGACAAACAT 57.884 33.333 0.00 0.00 0.00 2.71
2941 3260 8.504811 TGATATAGATAATGGAGGGACAAACA 57.495 34.615 0.00 0.00 0.00 2.83
2963 3282 5.796502 TTCAACCTCCCTTCCTATTTGAT 57.203 39.130 0.00 0.00 0.00 2.57
2964 3283 5.592587 TTTCAACCTCCCTTCCTATTTGA 57.407 39.130 0.00 0.00 0.00 2.69
2965 3284 6.857437 ATTTTCAACCTCCCTTCCTATTTG 57.143 37.500 0.00 0.00 0.00 2.32
2966 3285 7.124298 GCTTATTTTCAACCTCCCTTCCTATTT 59.876 37.037 0.00 0.00 0.00 1.40
2967 3286 6.607600 GCTTATTTTCAACCTCCCTTCCTATT 59.392 38.462 0.00 0.00 0.00 1.73
2978 3555 7.577303 TCCAGATCTATGCTTATTTTCAACCT 58.423 34.615 0.00 0.00 0.00 3.50
2979 3556 7.716998 TCTCCAGATCTATGCTTATTTTCAACC 59.283 37.037 0.00 0.00 0.00 3.77
3050 3627 0.109342 CCAGGTTGTCTCTTGCCTGT 59.891 55.000 8.39 0.00 45.08 4.00
3092 3669 7.176690 CCCTGTTAAATGCTTTCTTTTCCTCTA 59.823 37.037 0.00 0.00 0.00 2.43
3110 3687 2.607499 TGACTACCGTTCCCCTGTTAA 58.393 47.619 0.00 0.00 0.00 2.01
3126 3703 7.141363 GCTCAGTTGTTTGTGAATAAATGACT 58.859 34.615 0.00 0.00 36.50 3.41
3295 3872 7.546358 TGCTGGTTTATTCAGGTAAATCATTG 58.454 34.615 0.00 0.00 34.98 2.82
3346 3925 3.573598 TGACACAATAATTTTGCGCTGG 58.426 40.909 9.73 0.00 0.00 4.85
3348 3927 6.865726 TGTAAATGACACAATAATTTTGCGCT 59.134 30.769 9.73 0.00 31.20 5.92
3349 3928 7.043454 TGTAAATGACACAATAATTTTGCGC 57.957 32.000 0.00 0.00 31.20 6.09
3364 3943 0.802494 CGCACCAGGGTGTAAATGAC 59.198 55.000 18.99 0.69 46.90 3.06
3391 3970 8.463930 AAGAATACATCTCTCTCAGGTTAGAG 57.536 38.462 0.00 0.00 43.72 2.43
3395 3974 7.673641 ATGAAGAATACATCTCTCTCAGGTT 57.326 36.000 0.00 0.00 37.42 3.50
3397 3976 7.499292 ACAATGAAGAATACATCTCTCTCAGG 58.501 38.462 0.00 0.00 37.42 3.86
3398 3977 8.945481 AACAATGAAGAATACATCTCTCTCAG 57.055 34.615 0.00 0.00 37.42 3.35
3399 3978 7.984050 GGAACAATGAAGAATACATCTCTCTCA 59.016 37.037 0.00 0.00 37.42 3.27
3400 3979 7.984050 TGGAACAATGAAGAATACATCTCTCTC 59.016 37.037 0.00 0.00 33.04 3.20
3401 3980 7.855375 TGGAACAATGAAGAATACATCTCTCT 58.145 34.615 0.00 0.00 33.04 3.10
3402 3981 7.226325 CCTGGAACAATGAAGAATACATCTCTC 59.774 40.741 0.00 0.00 38.70 3.20
3403 3982 7.052873 CCTGGAACAATGAAGAATACATCTCT 58.947 38.462 0.00 0.00 38.70 3.10
3418 3997 4.218417 CGATTCAACCTTTCCTGGAACAAT 59.782 41.667 9.04 1.25 38.70 2.71
3609 4188 7.277174 AGACAATTTGAAAGTTTCCGATTCT 57.723 32.000 13.01 4.82 0.00 2.40
3633 4221 1.698506 ATGGCAAAAACAAGTCGGGA 58.301 45.000 0.00 0.00 0.00 5.14
3641 4229 4.662468 TCAGCTAACAATGGCAAAAACA 57.338 36.364 0.00 0.00 35.08 2.83
3653 4241 4.353777 ACTCTGGGTAGATTCAGCTAACA 58.646 43.478 0.00 0.00 29.50 2.41
3668 4256 2.175202 AGTGTTGCTAGAGACTCTGGG 58.825 52.381 15.55 8.79 0.00 4.45
3760 4377 4.444838 TAGTGTCGCGGCGCCATT 62.445 61.111 28.98 17.98 0.00 3.16
3763 4380 3.688475 TTAGTAGTGTCGCGGCGCC 62.688 63.158 27.87 19.07 0.00 6.53
3764 4381 1.143969 ATTTAGTAGTGTCGCGGCGC 61.144 55.000 24.21 24.21 0.00 6.53
3765 4382 0.570734 CATTTAGTAGTGTCGCGGCG 59.429 55.000 17.70 17.70 0.00 6.46
3766 4383 1.636988 ACATTTAGTAGTGTCGCGGC 58.363 50.000 2.29 2.29 0.00 6.53
3767 4384 2.222729 GCAACATTTAGTAGTGTCGCGG 60.223 50.000 6.13 0.00 0.00 6.46
3768 4385 2.410392 TGCAACATTTAGTAGTGTCGCG 59.590 45.455 0.00 0.00 0.00 5.87
3769 4386 4.398549 TTGCAACATTTAGTAGTGTCGC 57.601 40.909 0.00 0.00 0.00 5.19
3770 4387 4.838642 CGTTTGCAACATTTAGTAGTGTCG 59.161 41.667 0.00 0.00 0.00 4.35
3771 4388 5.744490 ACGTTTGCAACATTTAGTAGTGTC 58.256 37.500 0.00 0.00 0.00 3.67
3772 4389 5.744666 ACGTTTGCAACATTTAGTAGTGT 57.255 34.783 0.00 0.00 0.00 3.55
3773 4390 6.419090 CAACGTTTGCAACATTTAGTAGTG 57.581 37.500 0.00 0.00 0.00 2.74
3891 4510 5.617528 TTTGATGCCATTATGAAATGCCT 57.382 34.783 0.00 0.00 41.06 4.75
3960 4608 6.035542 GTCGAAATTTCTTTGGTTTGCTTGAA 59.964 34.615 15.92 0.00 0.00 2.69
3975 4623 8.703823 AAAGTTTACGTACATGTCGAAATTTC 57.296 30.769 19.74 8.20 0.00 2.17
3991 4639 4.901881 CGGCTTCTTGTACAAAAGTTTACG 59.098 41.667 21.20 17.81 0.00 3.18
3992 4640 5.813717 ACGGCTTCTTGTACAAAAGTTTAC 58.186 37.500 21.20 13.43 0.00 2.01
3994 4642 4.976224 ACGGCTTCTTGTACAAAAGTTT 57.024 36.364 21.20 10.59 0.00 2.66
3995 4643 4.024302 GCTACGGCTTCTTGTACAAAAGTT 60.024 41.667 21.20 13.62 35.22 2.66
3996 4644 3.497262 GCTACGGCTTCTTGTACAAAAGT 59.503 43.478 21.20 13.25 35.22 2.66
3997 4645 3.496884 TGCTACGGCTTCTTGTACAAAAG 59.503 43.478 10.03 15.42 39.59 2.27
3998 4646 3.468770 TGCTACGGCTTCTTGTACAAAA 58.531 40.909 10.03 6.43 39.59 2.44
4000 4648 2.823924 TGCTACGGCTTCTTGTACAA 57.176 45.000 8.28 8.28 39.59 2.41
4001 4649 4.368315 CATATGCTACGGCTTCTTGTACA 58.632 43.478 0.00 0.00 39.59 2.90
4002 4650 3.184581 GCATATGCTACGGCTTCTTGTAC 59.815 47.826 20.64 0.00 39.59 2.90
4003 4651 3.390135 GCATATGCTACGGCTTCTTGTA 58.610 45.455 20.64 0.00 39.59 2.41
4004 4652 2.213499 GCATATGCTACGGCTTCTTGT 58.787 47.619 20.64 0.00 39.59 3.16
4063 4870 2.997897 ACCTCACCTCAGACCGCC 60.998 66.667 0.00 0.00 0.00 6.13
4068 4886 1.133167 TCTGTTGGACCTCACCTCAGA 60.133 52.381 0.00 0.00 38.28 3.27
4070 4888 1.625315 CATCTGTTGGACCTCACCTCA 59.375 52.381 0.00 0.00 0.00 3.86
4071 4889 1.677217 GCATCTGTTGGACCTCACCTC 60.677 57.143 0.00 0.00 0.00 3.85
4072 4890 0.326264 GCATCTGTTGGACCTCACCT 59.674 55.000 0.00 0.00 0.00 4.00
4073 4891 0.678048 GGCATCTGTTGGACCTCACC 60.678 60.000 0.00 0.00 0.00 4.02
4074 4892 0.678048 GGGCATCTGTTGGACCTCAC 60.678 60.000 0.00 0.00 0.00 3.51
4187 5014 1.233369 CGTGGATAGGGAGGAGGGT 59.767 63.158 0.00 0.00 0.00 4.34
4447 5278 0.822164 GGTATGTGTAGCAGTCCGGT 59.178 55.000 0.00 0.00 0.00 5.28
4526 5357 3.692406 GAACCTCACCGCGTCCCT 61.692 66.667 4.92 0.00 0.00 4.20
4719 5550 3.989698 ATCGAGCCGAACACCGCAG 62.990 63.158 1.44 0.00 39.99 5.18
4720 5551 4.063967 ATCGAGCCGAACACCGCA 62.064 61.111 1.44 0.00 39.99 5.69
4733 5564 2.668632 GCCCTGGTCAACCATCGA 59.331 61.111 1.58 0.00 46.46 3.59
4792 5623 0.615331 GACATTCCTGTCCCTGCAGA 59.385 55.000 17.39 0.00 45.06 4.26
4801 5632 1.078848 GGCAGCGAGACATTCCTGT 60.079 57.895 0.00 0.00 38.67 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.