Multiple sequence alignment - TraesCS4B01G084900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G084900 chr4B 100.000 7045 0 0 1 7045 83147070 83140026 0.000000e+00 13010.0
1 TraesCS4B01G084900 chr4B 95.679 162 7 0 2823 2984 483266379 483266540 1.950000e-65 261.0
2 TraesCS4B01G084900 chr4B 92.982 171 12 0 2822 2992 55033469 55033639 4.220000e-62 250.0
3 TraesCS4B01G084900 chr4B 92.771 83 5 1 4014 4096 83142887 83142806 1.240000e-22 119.0
4 TraesCS4B01G084900 chr4B 92.771 83 5 1 4184 4265 83143057 83142975 1.240000e-22 119.0
5 TraesCS4B01G084900 chr4B 98.387 62 1 0 4423 4484 83142616 83142555 7.470000e-20 110.0
6 TraesCS4B01G084900 chr4B 98.387 62 1 0 4455 4516 83142648 83142587 7.470000e-20 110.0
7 TraesCS4B01G084900 chr4D 93.572 2567 124 19 4487 7024 56719162 56716608 0.000000e+00 3788.0
8 TraesCS4B01G084900 chr4D 92.285 2048 98 13 794 2824 56722635 56720631 0.000000e+00 2852.0
9 TraesCS4B01G084900 chr4D 96.100 1282 43 4 2986 4267 56720632 56719358 0.000000e+00 2084.0
10 TraesCS4B01G084900 chr4D 96.894 161 5 0 4292 4452 56719293 56719133 3.240000e-68 270.0
11 TraesCS4B01G084900 chr4D 91.477 176 15 0 2812 2987 484111753 484111928 7.060000e-60 243.0
12 TraesCS4B01G084900 chr4D 91.329 173 11 2 4014 4186 56719441 56719273 4.250000e-57 233.0
13 TraesCS4B01G084900 chr4D 91.667 84 6 1 4183 4265 56719612 56719529 1.610000e-21 115.0
14 TraesCS4B01G084900 chr4A 92.958 2414 116 32 4455 6848 540436373 540438752 0.000000e+00 3467.0
15 TraesCS4B01G084900 chr4A 91.360 2014 106 29 821 2824 540432964 540434919 0.000000e+00 2693.0
16 TraesCS4B01G084900 chr4A 96.499 1514 34 5 2986 4481 540434918 540436430 0.000000e+00 2484.0
17 TraesCS4B01G084900 chr4A 93.678 174 11 0 2819 2992 742467442 742467269 1.950000e-65 261.0
18 TraesCS4B01G084900 chr4A 87.023 131 7 3 4014 4144 540436118 540436238 9.530000e-29 139.0
19 TraesCS4B01G084900 chr4A 93.056 72 4 1 4184 4254 540435948 540436019 3.480000e-18 104.0
20 TraesCS4B01G084900 chr2B 92.102 785 59 2 1 784 748067291 748068073 0.000000e+00 1103.0
21 TraesCS4B01G084900 chr2B 93.243 148 10 0 1 148 711456459 711456312 1.190000e-52 219.0
22 TraesCS4B01G084900 chr7D 84.694 784 116 4 1 782 546052096 546051315 0.000000e+00 780.0
23 TraesCS4B01G084900 chr2D 84.655 782 117 3 1 781 24988935 24988156 0.000000e+00 776.0
24 TraesCS4B01G084900 chr2D 95.714 70 3 0 4118 4187 172409666 172409735 5.780000e-21 113.0
25 TraesCS4B01G084900 chr5D 84.399 782 119 2 1 781 309043592 309044371 0.000000e+00 765.0
26 TraesCS4B01G084900 chr5D 89.130 414 45 0 22 435 366058137 366057724 3.770000e-142 516.0
27 TraesCS4B01G084900 chr6B 83.077 780 130 2 1 780 234661736 234662513 0.000000e+00 708.0
28 TraesCS4B01G084900 chr6B 80.910 791 140 5 1 781 25797155 25796366 1.300000e-171 614.0
29 TraesCS4B01G084900 chr6B 80.679 766 144 4 1 764 523945367 523944604 6.090000e-165 592.0
30 TraesCS4B01G084900 chr1B 82.526 784 133 4 1 782 39984071 39984852 0.000000e+00 686.0
31 TraesCS4B01G084900 chr3D 85.284 564 83 0 201 764 552580608 552581171 3.660000e-162 582.0
32 TraesCS4B01G084900 chr3D 93.976 166 9 1 2823 2988 238999575 238999411 4.220000e-62 250.0
33 TraesCS4B01G084900 chr3D 94.286 70 4 0 4118 4187 126949045 126949114 2.690000e-19 108.0
34 TraesCS4B01G084900 chr5B 87.462 327 41 0 1 327 322160391 322160717 1.850000e-100 377.0
35 TraesCS4B01G084900 chr5B 94.545 165 9 0 2820 2984 539322719 539322883 9.070000e-64 255.0
36 TraesCS4B01G084900 chr5B 94.012 167 10 0 2818 2984 144588337 144588503 3.260000e-63 254.0
37 TraesCS4B01G084900 chr7A 92.982 171 11 1 2818 2987 32776676 32776506 1.520000e-61 248.0
38 TraesCS4B01G084900 chr6D 91.573 178 13 2 2810 2986 422936578 422936402 1.960000e-60 244.0
39 TraesCS4B01G084900 chr2A 95.714 70 3 0 4118 4187 177658409 177658340 5.780000e-21 113.0
40 TraesCS4B01G084900 chr3B 94.286 70 4 0 4118 4187 181288810 181288879 2.690000e-19 108.0
41 TraesCS4B01G084900 chr3A 94.286 70 4 0 4118 4187 137579559 137579628 2.690000e-19 108.0
42 TraesCS4B01G084900 chr1D 92.647 68 3 2 4119 4185 410795905 410795971 5.820000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G084900 chr4B 83140026 83147070 7044 True 13010.0 13010 100.000000 1 7045 1 chr4B.!!$R1 7044
1 TraesCS4B01G084900 chr4D 56716608 56722635 6027 True 1557.0 3788 93.641167 794 7024 6 chr4D.!!$R1 6230
2 TraesCS4B01G084900 chr4A 540432964 540438752 5788 False 1777.4 3467 92.179200 821 6848 5 chr4A.!!$F1 6027
3 TraesCS4B01G084900 chr2B 748067291 748068073 782 False 1103.0 1103 92.102000 1 784 1 chr2B.!!$F1 783
4 TraesCS4B01G084900 chr7D 546051315 546052096 781 True 780.0 780 84.694000 1 782 1 chr7D.!!$R1 781
5 TraesCS4B01G084900 chr2D 24988156 24988935 779 True 776.0 776 84.655000 1 781 1 chr2D.!!$R1 780
6 TraesCS4B01G084900 chr5D 309043592 309044371 779 False 765.0 765 84.399000 1 781 1 chr5D.!!$F1 780
7 TraesCS4B01G084900 chr6B 234661736 234662513 777 False 708.0 708 83.077000 1 780 1 chr6B.!!$F1 779
8 TraesCS4B01G084900 chr6B 25796366 25797155 789 True 614.0 614 80.910000 1 781 1 chr6B.!!$R1 780
9 TraesCS4B01G084900 chr6B 523944604 523945367 763 True 592.0 592 80.679000 1 764 1 chr6B.!!$R2 763
10 TraesCS4B01G084900 chr1B 39984071 39984852 781 False 686.0 686 82.526000 1 782 1 chr1B.!!$F1 781
11 TraesCS4B01G084900 chr3D 552580608 552581171 563 False 582.0 582 85.284000 201 764 1 chr3D.!!$F2 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 519 0.176910 TGGATTCGAGCAATGCCGTA 59.823 50.000 13.84 6.88 31.79 4.02 F
1401 1423 0.888619 TTGGTTGCTCGATCTCGTCT 59.111 50.000 0.00 0.00 40.80 4.18 F
2567 2592 0.040351 CACCCCTCTCTCCTCTGACA 59.960 60.000 0.00 0.00 0.00 3.58 F
2736 2773 0.613260 TACCTTGCCGACTTCTGCAT 59.387 50.000 0.00 0.00 36.04 3.96 F
3928 3970 1.478288 GCCCCATCTATCTTTGCTGCT 60.478 52.381 0.00 0.00 0.00 4.24 F
4272 4314 0.037160 TGGCGGTTAAGGTTCCTTCC 59.963 55.000 7.41 3.62 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2066 0.391130 CGAGGGAACGCCAATTCTGA 60.391 55.000 0.00 0.00 35.15 3.27 R
2705 2742 0.883833 GCAAGGTACAGCAGCATGTT 59.116 50.000 0.00 0.00 39.31 2.71 R
4254 4296 0.679002 GGGAAGGAACCTTAACCGCC 60.679 60.000 6.06 3.28 36.26 6.13 R
4256 4298 1.626825 TCAGGGAAGGAACCTTAACCG 59.373 52.381 15.96 12.60 37.87 4.44 R
5742 5833 1.410004 TCACTTCACCGAGTCCACTT 58.590 50.000 0.00 0.00 0.00 3.16 R
6113 6216 1.011333 AGGAACGGTTGTGACAAACG 58.989 50.000 31.35 31.35 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.748402 TGAACCACTGAATGATAATCAGCT 58.252 37.500 3.57 0.00 46.56 4.24
67 68 5.946942 TCTTGCTAATCTTCTGGAGATGT 57.053 39.130 0.00 0.00 44.41 3.06
78 79 5.719563 TCTTCTGGAGATGTTGGTACATACA 59.280 40.000 0.00 0.00 44.90 2.29
105 106 0.530288 GTAATGCATGCCAAACCCGT 59.470 50.000 16.68 0.00 0.00 5.28
142 143 2.037772 GTCAGTGAGCTTCCTCCAAAGA 59.962 50.000 0.00 0.00 37.29 2.52
167 168 6.029492 ACCTGGATGAATTAATTGGGATCA 57.971 37.500 5.17 0.00 0.00 2.92
227 228 7.437748 AGGAAGTGTAATCTATGATAGTGTGC 58.562 38.462 0.00 0.00 0.00 4.57
320 328 2.373169 ACAGATGGGTCTTTTGCTGAGA 59.627 45.455 0.00 0.00 30.42 3.27
327 335 2.037772 GGTCTTTTGCTGAGACAGGAGA 59.962 50.000 13.85 0.00 44.15 3.71
355 363 2.388890 CTGGGATGATCCTGCGGGAC 62.389 65.000 18.90 11.70 45.43 4.46
444 452 2.821546 GCTATGTGCGTGTATGGAAGA 58.178 47.619 0.00 0.00 0.00 2.87
446 454 3.621268 GCTATGTGCGTGTATGGAAGAAA 59.379 43.478 0.00 0.00 0.00 2.52
485 493 2.613691 GGTCGAACCTAGCGATTGAAA 58.386 47.619 0.00 0.00 40.19 2.69
511 519 0.176910 TGGATTCGAGCAATGCCGTA 59.823 50.000 13.84 6.88 31.79 4.02
560 568 4.819630 ACCGTTCAGTTTATGCTCTTTTGA 59.180 37.500 0.00 0.00 0.00 2.69
619 627 6.417191 TTTTGTATTACTCATGTTCCTCGC 57.583 37.500 0.00 0.00 0.00 5.03
660 668 6.034591 GTGATAGACTTGCTAGTTTCGCTAA 58.965 40.000 1.43 0.00 33.84 3.09
770 779 9.494271 TCATTGAGTAATACAATTCTATCCTGC 57.506 33.333 0.00 0.00 36.07 4.85
771 780 7.946655 TTGAGTAATACAATTCTATCCTGCG 57.053 36.000 0.00 0.00 0.00 5.18
772 781 6.455647 TGAGTAATACAATTCTATCCTGCGG 58.544 40.000 0.00 0.00 0.00 5.69
798 807 1.400737 AAGCTACTACGAGCCCGAAT 58.599 50.000 0.00 0.00 43.97 3.34
803 812 3.057736 GCTACTACGAGCCCGAATTATCA 60.058 47.826 0.00 0.00 39.50 2.15
805 814 4.395959 ACTACGAGCCCGAATTATCAAA 57.604 40.909 0.00 0.00 39.50 2.69
808 817 1.931172 CGAGCCCGAATTATCAAACGT 59.069 47.619 0.00 0.00 38.22 3.99
811 820 3.340034 AGCCCGAATTATCAAACGTTCA 58.660 40.909 0.00 0.00 0.00 3.18
812 821 3.126343 AGCCCGAATTATCAAACGTTCAC 59.874 43.478 0.00 0.00 0.00 3.18
823 832 3.827784 CGTTCACGAAGCTCGCGG 61.828 66.667 6.13 0.00 45.12 6.46
824 833 4.135493 GTTCACGAAGCTCGCGGC 62.135 66.667 6.13 9.11 45.12 6.53
1042 1064 3.092511 TCATGCTCCTGCCCCTCC 61.093 66.667 0.00 0.00 38.71 4.30
1043 1065 3.095163 CATGCTCCTGCCCCTCCT 61.095 66.667 0.00 0.00 38.71 3.69
1044 1066 2.771762 ATGCTCCTGCCCCTCCTC 60.772 66.667 0.00 0.00 38.71 3.71
1046 1068 4.814041 GCTCCTGCCCCTCCTCCT 62.814 72.222 0.00 0.00 0.00 3.69
1047 1069 2.445654 CTCCTGCCCCTCCTCCTC 60.446 72.222 0.00 0.00 0.00 3.71
1048 1070 4.095400 TCCTGCCCCTCCTCCTCC 62.095 72.222 0.00 0.00 0.00 4.30
1049 1071 4.101077 CCTGCCCCTCCTCCTCCT 62.101 72.222 0.00 0.00 0.00 3.69
1050 1072 2.716203 CCTGCCCCTCCTCCTCCTA 61.716 68.421 0.00 0.00 0.00 2.94
1116 1138 3.069980 GCTGCTCCTCCACGACGAT 62.070 63.158 0.00 0.00 0.00 3.73
1372 1394 1.961394 TCGCATCCTATCGGTAGCTTT 59.039 47.619 0.00 0.00 0.00 3.51
1401 1423 0.888619 TTGGTTGCTCGATCTCGTCT 59.111 50.000 0.00 0.00 40.80 4.18
1433 1455 3.066621 TCGTTGCTTGCTGATCTGTTTTT 59.933 39.130 1.27 0.00 0.00 1.94
1456 1478 1.123928 ACTTCCTGATCCCGTGATCC 58.876 55.000 5.39 0.00 45.74 3.36
1466 1488 2.903855 CGTGATCCATGGGCAGCC 60.904 66.667 13.02 1.26 0.00 4.85
1509 1532 3.683340 GGGTAGATTTGGTTGAGTTCGTC 59.317 47.826 0.00 0.00 0.00 4.20
1531 1554 2.421529 CCCCCATCAGTAGTTTGTAGCC 60.422 54.545 0.00 0.00 0.00 3.93
1546 1569 1.534163 GTAGCCGTTTGGTTTGGAGAC 59.466 52.381 0.00 0.00 37.67 3.36
1645 1670 3.946402 TGCTATTTGTTTGACGTGTGTG 58.054 40.909 0.00 0.00 0.00 3.82
1646 1671 3.375610 TGCTATTTGTTTGACGTGTGTGT 59.624 39.130 0.00 0.00 0.00 3.72
1647 1672 3.723764 GCTATTTGTTTGACGTGTGTGTG 59.276 43.478 0.00 0.00 0.00 3.82
1648 1673 3.840890 ATTTGTTTGACGTGTGTGTGT 57.159 38.095 0.00 0.00 0.00 3.72
1649 1674 4.948608 ATTTGTTTGACGTGTGTGTGTA 57.051 36.364 0.00 0.00 0.00 2.90
1650 1675 4.948608 TTTGTTTGACGTGTGTGTGTAT 57.051 36.364 0.00 0.00 0.00 2.29
1651 1676 6.606234 ATTTGTTTGACGTGTGTGTGTATA 57.394 33.333 0.00 0.00 0.00 1.47
1652 1677 5.392480 TTGTTTGACGTGTGTGTGTATAC 57.608 39.130 0.00 0.00 0.00 1.47
1653 1678 4.430908 TGTTTGACGTGTGTGTGTATACA 58.569 39.130 0.08 0.08 0.00 2.29
1654 1679 5.051153 TGTTTGACGTGTGTGTGTATACAT 58.949 37.500 9.18 0.00 39.39 2.29
1683 1708 4.143221 CGGTTCAGTTTTGTTGTTTGGTTG 60.143 41.667 0.00 0.00 0.00 3.77
1710 1735 2.774687 CAAAGTAGTTGCTACCCCGTT 58.225 47.619 3.01 0.00 37.65 4.44
1764 1789 7.910441 ATGAGCTTTACCATTTCATTTTTGG 57.090 32.000 0.00 0.00 36.56 3.28
1793 1818 1.270518 AGTGGCATGACACACTCTGTC 60.271 52.381 32.65 3.74 44.08 3.51
1840 1865 6.837568 ACATCCTTTGCAAGAATATGGAATCT 59.162 34.615 0.00 0.00 30.43 2.40
1858 1883 7.394016 TGGAATCTTTCTACATTGCTTACTCA 58.606 34.615 0.00 0.00 0.00 3.41
1869 1894 5.595542 ACATTGCTTACTCACATATTGCCAT 59.404 36.000 0.00 0.00 0.00 4.40
2041 2066 3.331889 AGTTTGGTCACAAGGGATGAGAT 59.668 43.478 0.00 0.00 37.97 2.75
2052 2077 2.149578 GGGATGAGATCAGAATTGGCG 58.850 52.381 0.00 0.00 0.00 5.69
2060 2085 0.391130 TCAGAATTGGCGTTCCCTCG 60.391 55.000 0.00 0.00 0.00 4.63
2070 2095 0.319555 CGTTCCCTCGAGAGCAAACA 60.320 55.000 15.71 0.00 0.00 2.83
2184 2209 5.456763 GGATTTGCCTAGATAACCCATGACT 60.457 44.000 0.00 0.00 0.00 3.41
2337 2362 5.013079 TGTTCCTAGTGTGACATTTCCATCT 59.987 40.000 0.00 0.00 0.00 2.90
2567 2592 0.040351 CACCCCTCTCTCCTCTGACA 59.960 60.000 0.00 0.00 0.00 3.58
2572 2597 1.682854 CCTCTCTCCTCTGACATGCTC 59.317 57.143 0.00 0.00 0.00 4.26
2613 2650 1.462928 CTCGCCTCCCTCTCCCTAT 59.537 63.158 0.00 0.00 0.00 2.57
2675 2712 2.049156 CGCTCTTGCCACTCGTCA 60.049 61.111 0.00 0.00 35.36 4.35
2682 2719 3.311110 GCCACTCGTCACCTCCCA 61.311 66.667 0.00 0.00 0.00 4.37
2736 2773 0.613260 TACCTTGCCGACTTCTGCAT 59.387 50.000 0.00 0.00 36.04 3.96
2769 2806 7.201920 GCAGGGTGTCTAGATTAGAAGTCATAA 60.202 40.741 0.00 0.00 36.40 1.90
2807 2845 5.824904 TGCTTCAGAATTATCTTGGCTTC 57.175 39.130 0.00 0.00 32.03 3.86
2822 2860 3.146066 TGGCTTCGTTTGCTTGTATTCT 58.854 40.909 0.00 0.00 0.00 2.40
2823 2861 4.320023 TGGCTTCGTTTGCTTGTATTCTA 58.680 39.130 0.00 0.00 0.00 2.10
2824 2862 4.153475 TGGCTTCGTTTGCTTGTATTCTAC 59.847 41.667 0.00 0.00 0.00 2.59
2825 2863 4.392138 GGCTTCGTTTGCTTGTATTCTACT 59.608 41.667 0.00 0.00 0.00 2.57
2826 2864 5.446073 GGCTTCGTTTGCTTGTATTCTACTC 60.446 44.000 0.00 0.00 0.00 2.59
2827 2865 5.446073 GCTTCGTTTGCTTGTATTCTACTCC 60.446 44.000 0.00 0.00 0.00 3.85
2828 2866 4.501071 TCGTTTGCTTGTATTCTACTCCC 58.499 43.478 0.00 0.00 0.00 4.30
2829 2867 4.222145 TCGTTTGCTTGTATTCTACTCCCT 59.778 41.667 0.00 0.00 0.00 4.20
2830 2868 4.567159 CGTTTGCTTGTATTCTACTCCCTC 59.433 45.833 0.00 0.00 0.00 4.30
2831 2869 4.755266 TTGCTTGTATTCTACTCCCTCC 57.245 45.455 0.00 0.00 0.00 4.30
2832 2870 3.995636 TGCTTGTATTCTACTCCCTCCT 58.004 45.455 0.00 0.00 0.00 3.69
2833 2871 4.362677 TGCTTGTATTCTACTCCCTCCTT 58.637 43.478 0.00 0.00 0.00 3.36
2834 2872 4.783227 TGCTTGTATTCTACTCCCTCCTTT 59.217 41.667 0.00 0.00 0.00 3.11
2835 2873 5.104900 TGCTTGTATTCTACTCCCTCCTTTC 60.105 44.000 0.00 0.00 0.00 2.62
2836 2874 5.685337 GCTTGTATTCTACTCCCTCCTTTCC 60.685 48.000 0.00 0.00 0.00 3.13
2837 2875 5.222278 TGTATTCTACTCCCTCCTTTCCT 57.778 43.478 0.00 0.00 0.00 3.36
2838 2876 6.351317 TGTATTCTACTCCCTCCTTTCCTA 57.649 41.667 0.00 0.00 0.00 2.94
2839 2877 6.748969 TGTATTCTACTCCCTCCTTTCCTAA 58.251 40.000 0.00 0.00 0.00 2.69
2840 2878 7.194050 TGTATTCTACTCCCTCCTTTCCTAAA 58.806 38.462 0.00 0.00 0.00 1.85
2841 2879 7.849904 TGTATTCTACTCCCTCCTTTCCTAAAT 59.150 37.037 0.00 0.00 0.00 1.40
2842 2880 9.377238 GTATTCTACTCCCTCCTTTCCTAAATA 57.623 37.037 0.00 0.00 0.00 1.40
2845 2883 9.962835 TTCTACTCCCTCCTTTCCTAAATATAA 57.037 33.333 0.00 0.00 0.00 0.98
2846 2884 9.603189 TCTACTCCCTCCTTTCCTAAATATAAG 57.397 37.037 0.00 0.00 0.00 1.73
2847 2885 9.382307 CTACTCCCTCCTTTCCTAAATATAAGT 57.618 37.037 0.00 0.00 0.00 2.24
2848 2886 8.265108 ACTCCCTCCTTTCCTAAATATAAGTC 57.735 38.462 0.00 0.00 0.00 3.01
2849 2887 8.074991 ACTCCCTCCTTTCCTAAATATAAGTCT 58.925 37.037 0.00 0.00 0.00 3.24
2850 2888 8.871570 TCCCTCCTTTCCTAAATATAAGTCTT 57.128 34.615 0.00 0.00 0.00 3.01
2851 2889 9.292751 TCCCTCCTTTCCTAAATATAAGTCTTT 57.707 33.333 0.00 0.00 0.00 2.52
2852 2890 9.343539 CCCTCCTTTCCTAAATATAAGTCTTTG 57.656 37.037 0.00 0.00 0.00 2.77
2853 2891 8.841300 CCTCCTTTCCTAAATATAAGTCTTTGC 58.159 37.037 0.00 0.00 0.00 3.68
2854 2892 9.396022 CTCCTTTCCTAAATATAAGTCTTTGCA 57.604 33.333 0.00 0.00 0.00 4.08
2855 2893 9.396022 TCCTTTCCTAAATATAAGTCTTTGCAG 57.604 33.333 0.00 0.00 0.00 4.41
2856 2894 9.396022 CCTTTCCTAAATATAAGTCTTTGCAGA 57.604 33.333 0.00 0.00 0.00 4.26
2864 2902 9.638176 AAATATAAGTCTTTGCAGAGATTCCAT 57.362 29.630 10.53 6.21 0.00 3.41
2865 2903 8.845413 ATATAAGTCTTTGCAGAGATTCCATC 57.155 34.615 10.53 0.00 0.00 3.51
2866 2904 4.564782 AGTCTTTGCAGAGATTCCATCA 57.435 40.909 10.53 0.00 0.00 3.07
2867 2905 5.113446 AGTCTTTGCAGAGATTCCATCAT 57.887 39.130 10.53 0.00 0.00 2.45
2868 2906 4.882427 AGTCTTTGCAGAGATTCCATCATG 59.118 41.667 10.53 0.00 0.00 3.07
2869 2907 4.036498 GTCTTTGCAGAGATTCCATCATGG 59.964 45.833 10.53 0.00 39.43 3.66
2870 2908 3.937778 TTGCAGAGATTCCATCATGGA 57.062 42.857 0.66 0.66 46.61 3.41
2882 2920 5.453567 TCCATCATGGACTACATACGAAG 57.546 43.478 0.66 0.00 42.67 3.79
2883 2921 3.990469 CCATCATGGACTACATACGAAGC 59.010 47.826 0.00 0.00 40.96 3.86
2884 2922 4.501400 CCATCATGGACTACATACGAAGCA 60.501 45.833 0.00 0.00 40.96 3.91
2885 2923 4.729227 TCATGGACTACATACGAAGCAA 57.271 40.909 0.00 0.00 37.84 3.91
2886 2924 4.430007 TCATGGACTACATACGAAGCAAC 58.570 43.478 0.00 0.00 37.84 4.17
2887 2925 3.945981 TGGACTACATACGAAGCAACA 57.054 42.857 0.00 0.00 0.00 3.33
2888 2926 4.465632 TGGACTACATACGAAGCAACAT 57.534 40.909 0.00 0.00 0.00 2.71
2889 2927 4.180817 TGGACTACATACGAAGCAACATG 58.819 43.478 0.00 0.00 0.00 3.21
2890 2928 4.081917 TGGACTACATACGAAGCAACATGA 60.082 41.667 0.00 0.00 0.00 3.07
2891 2929 4.504461 GGACTACATACGAAGCAACATGAG 59.496 45.833 0.00 0.00 0.00 2.90
2892 2930 5.073311 ACTACATACGAAGCAACATGAGT 57.927 39.130 0.00 0.00 0.00 3.41
2893 2931 4.864806 ACTACATACGAAGCAACATGAGTG 59.135 41.667 0.00 0.00 0.00 3.51
2894 2932 3.925379 ACATACGAAGCAACATGAGTGA 58.075 40.909 0.00 0.00 0.00 3.41
2895 2933 4.314961 ACATACGAAGCAACATGAGTGAA 58.685 39.130 0.00 0.00 0.00 3.18
2896 2934 4.937620 ACATACGAAGCAACATGAGTGAAT 59.062 37.500 0.00 0.00 0.00 2.57
2897 2935 5.063944 ACATACGAAGCAACATGAGTGAATC 59.936 40.000 0.00 0.00 0.00 2.52
2898 2936 3.668447 ACGAAGCAACATGAGTGAATCT 58.332 40.909 0.00 0.00 0.00 2.40
2899 2937 4.820897 ACGAAGCAACATGAGTGAATCTA 58.179 39.130 0.00 0.00 0.00 1.98
2900 2938 4.627467 ACGAAGCAACATGAGTGAATCTAC 59.373 41.667 0.00 0.00 0.00 2.59
2901 2939 4.627035 CGAAGCAACATGAGTGAATCTACA 59.373 41.667 0.00 0.00 0.00 2.74
2902 2940 5.445142 CGAAGCAACATGAGTGAATCTACAC 60.445 44.000 0.00 0.00 40.60 2.90
2915 2953 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
2916 2954 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
2917 2955 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
2918 2956 9.534565 TGAATCTACACTCTAAAATGCATCTAC 57.465 33.333 0.00 0.00 0.00 2.59
2919 2957 9.534565 GAATCTACACTCTAAAATGCATCTACA 57.465 33.333 0.00 0.00 0.00 2.74
2922 2960 9.967346 TCTACACTCTAAAATGCATCTACATAC 57.033 33.333 0.00 0.00 0.00 2.39
2923 2961 9.750125 CTACACTCTAAAATGCATCTACATACA 57.250 33.333 0.00 0.00 0.00 2.29
2925 2963 9.265901 ACACTCTAAAATGCATCTACATACATC 57.734 33.333 0.00 0.00 0.00 3.06
2926 2964 8.715998 CACTCTAAAATGCATCTACATACATCC 58.284 37.037 0.00 0.00 0.00 3.51
2927 2965 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
2928 2966 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
2929 2967 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
2930 2968 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
2938 2976 3.744238 CATACATCCGTATGTGGTCCA 57.256 47.619 3.56 0.00 46.70 4.02
2939 2977 4.271696 CATACATCCGTATGTGGTCCAT 57.728 45.455 3.56 0.00 46.70 3.41
2940 2978 5.400066 CATACATCCGTATGTGGTCCATA 57.600 43.478 3.56 0.00 46.70 2.74
2941 2979 5.410924 CATACATCCGTATGTGGTCCATAG 58.589 45.833 3.56 0.00 46.70 2.23
2942 2980 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
2943 2981 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
2944 2982 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
2945 2983 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
2946 2984 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
2947 2985 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
2948 2986 5.104693 TCCGTATGTGGTCCATAGTGAAATT 60.105 40.000 0.00 0.00 36.71 1.82
2949 2987 5.588648 CCGTATGTGGTCCATAGTGAAATTT 59.411 40.000 0.00 0.00 36.71 1.82
2950 2988 6.238374 CCGTATGTGGTCCATAGTGAAATTTC 60.238 42.308 11.41 11.41 36.71 2.17
2951 2989 6.538742 CGTATGTGGTCCATAGTGAAATTTCT 59.461 38.462 18.64 2.61 36.71 2.52
2952 2990 7.709182 CGTATGTGGTCCATAGTGAAATTTCTA 59.291 37.037 18.64 4.82 36.71 2.10
2953 2991 7.865706 ATGTGGTCCATAGTGAAATTTCTAC 57.134 36.000 18.64 14.20 29.82 2.59
2954 2992 6.774673 TGTGGTCCATAGTGAAATTTCTACA 58.225 36.000 18.64 4.47 0.00 2.74
2955 2993 7.227873 TGTGGTCCATAGTGAAATTTCTACAA 58.772 34.615 18.64 3.14 0.00 2.41
2956 2994 7.721842 TGTGGTCCATAGTGAAATTTCTACAAA 59.278 33.333 18.64 8.40 0.00 2.83
2957 2995 8.237267 GTGGTCCATAGTGAAATTTCTACAAAG 58.763 37.037 18.64 4.92 0.00 2.77
2958 2996 8.160765 TGGTCCATAGTGAAATTTCTACAAAGA 58.839 33.333 18.64 6.99 0.00 2.52
2959 2997 8.451748 GGTCCATAGTGAAATTTCTACAAAGAC 58.548 37.037 18.64 16.35 0.00 3.01
2960 2998 9.220767 GTCCATAGTGAAATTTCTACAAAGACT 57.779 33.333 18.64 13.41 0.00 3.24
2961 2999 9.793259 TCCATAGTGAAATTTCTACAAAGACTT 57.207 29.630 18.64 2.00 0.00 3.01
2977 3015 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2978 3016 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2979 3017 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2980 3018 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2981 3019 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2982 3020 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2983 3021 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2984 3022 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
3017 3055 8.321353 ACTAGTTGTCTCATTGAATAATCACCA 58.679 33.333 0.00 0.00 34.61 4.17
3025 3063 9.192642 TCTCATTGAATAATCACCAATGTCAAT 57.807 29.630 12.25 0.00 44.34 2.57
3150 3190 5.762218 CACTCATTTTCTGAACCAGACTCTT 59.238 40.000 0.00 0.00 40.46 2.85
3277 3317 3.073062 ACCAACTTATCTGGTGCTTCTGT 59.927 43.478 0.00 0.00 45.67 3.41
3404 3444 4.396166 CCTCAATCAAAGCGGTAAGTTGAT 59.604 41.667 7.10 7.10 42.38 2.57
3411 3451 5.180492 TCAAAGCGGTAAGTTGATTAGTTGG 59.820 40.000 0.00 0.00 0.00 3.77
3422 3462 8.409358 AAGTTGATTAGTTGGCTAACTTCATT 57.591 30.769 21.26 8.81 44.57 2.57
3461 3501 3.581265 TCATTATGGCTTGCTGGATCA 57.419 42.857 0.00 0.00 0.00 2.92
3831 3873 9.658475 TCTTAAAATACTGTCAACATTTTCGTG 57.342 29.630 7.12 2.25 34.57 4.35
3928 3970 1.478288 GCCCCATCTATCTTTGCTGCT 60.478 52.381 0.00 0.00 0.00 4.24
3989 4031 5.183713 TGATGGTTTAGTTCAGAAGGCATTG 59.816 40.000 0.00 0.00 0.00 2.82
3992 4034 2.806945 TAGTTCAGAAGGCATTGGGG 57.193 50.000 0.00 0.00 0.00 4.96
4136 4178 7.052873 TCCTGATACTACCTCTGTACACTAAC 58.947 42.308 0.00 0.00 0.00 2.34
4213 4255 9.823647 AGATTGTGTTAGAGATGGTTAAGTATG 57.176 33.333 0.00 0.00 0.00 2.39
4256 4298 6.064717 AGAAATATCTATTGGTGTTCCTGGC 58.935 40.000 0.00 0.00 32.88 4.85
4267 4309 1.162698 GTTCCTGGCGGTTAAGGTTC 58.837 55.000 0.00 0.00 34.94 3.62
4269 4311 0.838987 TCCTGGCGGTTAAGGTTCCT 60.839 55.000 0.00 0.00 34.94 3.36
4270 4312 0.037734 CCTGGCGGTTAAGGTTCCTT 59.962 55.000 9.15 9.15 0.00 3.36
4271 4313 1.450025 CTGGCGGTTAAGGTTCCTTC 58.550 55.000 7.41 0.00 0.00 3.46
4272 4314 0.037160 TGGCGGTTAAGGTTCCTTCC 59.963 55.000 7.41 3.62 0.00 3.46
4273 4315 0.679002 GGCGGTTAAGGTTCCTTCCC 60.679 60.000 7.41 8.40 0.00 3.97
4274 4316 0.327259 GCGGTTAAGGTTCCTTCCCT 59.673 55.000 7.41 0.00 0.00 4.20
4275 4317 1.949079 GCGGTTAAGGTTCCTTCCCTG 60.949 57.143 7.41 6.21 30.99 4.45
4276 4318 1.626825 CGGTTAAGGTTCCTTCCCTGA 59.373 52.381 7.41 0.00 30.99 3.86
4453 4535 8.045507 AGTTATAACTACCTGTTTTTAGGAGCC 58.954 37.037 16.60 0.00 41.16 4.70
4454 4536 3.715638 ACTACCTGTTTTTAGGAGCCC 57.284 47.619 0.00 0.00 40.42 5.19
4455 4537 3.257578 ACTACCTGTTTTTAGGAGCCCT 58.742 45.455 0.00 0.00 40.42 5.19
4456 4538 3.656264 ACTACCTGTTTTTAGGAGCCCTT 59.344 43.478 0.00 0.00 40.42 3.95
4457 4539 3.156288 ACCTGTTTTTAGGAGCCCTTC 57.844 47.619 0.00 0.00 40.42 3.46
4458 4540 2.716969 ACCTGTTTTTAGGAGCCCTTCT 59.283 45.455 0.00 0.00 40.42 2.85
4459 4541 3.914435 ACCTGTTTTTAGGAGCCCTTCTA 59.086 43.478 0.00 0.00 40.42 2.10
4460 4542 4.019231 ACCTGTTTTTAGGAGCCCTTCTAG 60.019 45.833 0.00 0.00 40.42 2.43
4461 4543 4.019231 CCTGTTTTTAGGAGCCCTTCTAGT 60.019 45.833 0.00 0.00 40.42 2.57
4462 4544 5.515008 CCTGTTTTTAGGAGCCCTTCTAGTT 60.515 44.000 0.00 0.00 40.42 2.24
4463 4545 6.296259 CCTGTTTTTAGGAGCCCTTCTAGTTA 60.296 42.308 0.00 0.00 40.42 2.24
4464 4546 7.266905 TGTTTTTAGGAGCCCTTCTAGTTAT 57.733 36.000 0.00 0.00 34.61 1.89
4465 4547 8.383374 TGTTTTTAGGAGCCCTTCTAGTTATA 57.617 34.615 0.00 0.00 34.61 0.98
4466 4548 8.828751 TGTTTTTAGGAGCCCTTCTAGTTATAA 58.171 33.333 0.00 0.00 34.61 0.98
4467 4549 9.107177 GTTTTTAGGAGCCCTTCTAGTTATAAC 57.893 37.037 7.57 7.57 34.61 1.89
4468 4550 8.619683 TTTTAGGAGCCCTTCTAGTTATAACT 57.380 34.615 21.35 21.35 37.79 2.24
4469 4551 9.719433 TTTTAGGAGCCCTTCTAGTTATAACTA 57.281 33.333 21.30 21.30 36.41 2.24
4470 4552 8.703378 TTAGGAGCCCTTCTAGTTATAACTAC 57.297 38.462 19.30 10.06 36.41 2.73
4471 4553 6.076653 AGGAGCCCTTCTAGTTATAACTACC 58.923 44.000 19.30 15.79 40.37 3.18
4472 4554 6.076653 GGAGCCCTTCTAGTTATAACTACCT 58.923 44.000 19.30 9.83 40.37 3.08
4473 4555 6.015265 GGAGCCCTTCTAGTTATAACTACCTG 60.015 46.154 19.30 11.46 40.37 4.00
4474 4556 6.442091 AGCCCTTCTAGTTATAACTACCTGT 58.558 40.000 19.30 0.12 40.37 4.00
4475 4557 6.901857 AGCCCTTCTAGTTATAACTACCTGTT 59.098 38.462 19.30 4.50 40.37 3.16
4476 4558 7.402361 AGCCCTTCTAGTTATAACTACCTGTTT 59.598 37.037 19.30 0.00 40.37 2.83
4477 4559 8.045507 GCCCTTCTAGTTATAACTACCTGTTTT 58.954 37.037 19.30 0.00 40.37 2.43
4478 4560 9.955102 CCCTTCTAGTTATAACTACCTGTTTTT 57.045 33.333 19.30 0.00 40.37 1.94
4559 4641 9.857656 TCAGCATCAATCTAAGAATTTCCTTAT 57.142 29.630 0.00 0.00 0.00 1.73
4754 4836 6.881065 GGCACTAGGAATGCATATTCAATAGA 59.119 38.462 0.00 0.00 45.27 1.98
4926 5008 4.098416 GCCGTTGCTTATTTGCTAGAAAG 58.902 43.478 0.00 0.00 33.53 2.62
4927 5009 4.142687 GCCGTTGCTTATTTGCTAGAAAGA 60.143 41.667 0.00 0.00 33.53 2.52
4928 5010 5.563842 CCGTTGCTTATTTGCTAGAAAGAG 58.436 41.667 0.00 0.00 0.00 2.85
4933 5015 6.467677 TGCTTATTTGCTAGAAAGAGTCACT 58.532 36.000 0.00 0.00 0.00 3.41
4945 5027 5.482175 AGAAAGAGTCACTTGTACCTAGCAT 59.518 40.000 0.00 0.00 38.98 3.79
4996 5079 7.414222 TTTCTAGGTGATAAATCGGTACTGT 57.586 36.000 0.64 0.00 0.00 3.55
5228 5319 3.255395 TGTTTATGGAGTTGCATGTGGTG 59.745 43.478 0.00 0.00 0.00 4.17
5329 5420 7.486407 AAACTTCGAGGGTTATACTTCCTAA 57.514 36.000 0.00 0.00 0.00 2.69
5362 5453 9.467258 CTCCTGCAATTATGGTAAAATAACATG 57.533 33.333 0.00 0.00 36.61 3.21
5408 5499 3.128589 TCACCCGTTAAGTATACCGTGTC 59.871 47.826 0.00 0.00 0.00 3.67
5535 5626 1.745653 GCACCAAGGTAAATCTCTGCC 59.254 52.381 0.00 0.00 0.00 4.85
5616 5707 9.014297 CATTTATCTTAGTGACCTTTTTCCAGT 57.986 33.333 0.00 0.00 0.00 4.00
5626 5717 5.126384 TGACCTTTTTCCAGTAACAAACCTG 59.874 40.000 0.00 0.00 0.00 4.00
5642 5733 4.900635 AACCTGTTGCTAAAGAACAGTG 57.099 40.909 11.58 6.86 45.97 3.66
5807 5898 4.703897 TGGGCTAAATATGTGAGTACAGC 58.296 43.478 0.00 0.00 40.79 4.40
5887 5988 5.294552 CGTATCCTTTTCCTTGAATCTGACC 59.705 44.000 0.00 0.00 0.00 4.02
6016 6117 0.825010 CAAGCTCCAGCACAAAGGGT 60.825 55.000 0.48 0.00 45.16 4.34
6047 6148 3.109928 TGCTCCAAGGAGAAGATGATGA 58.890 45.455 19.99 0.00 44.53 2.92
6052 6153 4.779489 TCCAAGGAGAAGATGATGACTTCA 59.221 41.667 0.00 0.00 44.01 3.02
6088 6191 4.351874 GCCATAGGTACTTTATCTGGCA 57.648 45.455 12.56 0.00 45.42 4.92
6113 6216 4.768659 CTATTTCAGCATCACAGACGTC 57.231 45.455 7.70 7.70 0.00 4.34
6139 6242 0.944386 CACAACCGTTCCTTCACCTG 59.056 55.000 0.00 0.00 0.00 4.00
6143 6246 2.806244 CAACCGTTCCTTCACCTGTAAG 59.194 50.000 0.00 0.00 0.00 2.34
6148 6251 5.481473 ACCGTTCCTTCACCTGTAAGTTATA 59.519 40.000 0.00 0.00 0.00 0.98
6162 6265 7.765360 CCTGTAAGTTATACCCAACATCGTTTA 59.235 37.037 0.00 0.00 0.00 2.01
6187 6290 7.771927 AGTTTCAGATTCACAAAGAATGGAT 57.228 32.000 0.00 0.00 46.76 3.41
6332 6441 2.735444 CGTGTTCTGGTCGCATCTACAT 60.735 50.000 0.00 0.00 0.00 2.29
6358 6468 6.414987 GCGTATTTTGCCTGTTGATAGAAATC 59.585 38.462 0.00 0.00 0.00 2.17
6367 6477 5.008415 CCTGTTGATAGAAATCACCATCAGC 59.992 44.000 0.00 0.00 41.87 4.26
6375 6485 4.706962 AGAAATCACCATCAGCCTTTAACC 59.293 41.667 0.00 0.00 0.00 2.85
6453 6564 6.003950 ACACTGTATGTTTTGCTCATAACCT 58.996 36.000 1.80 0.00 38.98 3.50
6514 6630 3.996363 GGTTTGATGCTTTGATGTTTCCC 59.004 43.478 0.00 0.00 0.00 3.97
6523 6639 5.104982 TGCTTTGATGTTTCCCAAGTTTCTT 60.105 36.000 0.00 0.00 0.00 2.52
6567 6687 6.656693 GCCTGTATGTAAATGCTTATCTCCAT 59.343 38.462 0.00 0.00 0.00 3.41
6568 6688 7.824289 GCCTGTATGTAAATGCTTATCTCCATA 59.176 37.037 0.00 0.00 0.00 2.74
6574 6694 7.744733 TGTAAATGCTTATCTCCATATGGACA 58.255 34.615 20.98 15.66 39.78 4.02
6608 6728 9.578576 AATCATTGATGTTTACCATGCTATAGT 57.421 29.630 0.00 0.00 32.56 2.12
6610 6730 8.839343 TCATTGATGTTTACCATGCTATAGTTG 58.161 33.333 0.84 0.06 32.56 3.16
6688 6808 4.287238 ACTGTGAATGTTTGTCCGTTTC 57.713 40.909 0.00 0.00 0.00 2.78
6689 6809 3.692101 ACTGTGAATGTTTGTCCGTTTCA 59.308 39.130 0.00 0.00 0.00 2.69
6727 6847 9.983804 GTGTATTTAGGCTGTACTAAAATGTTC 57.016 33.333 0.00 0.00 43.73 3.18
6749 6869 6.392625 TCTCCTGTATAGAACATGTGTAGC 57.607 41.667 0.00 0.00 37.50 3.58
6814 6934 4.579454 ATGCTGTGGACATTCATTATGC 57.421 40.909 0.00 0.00 37.81 3.14
6837 6957 5.523552 GCTTTTGCAAGTAATTCACACCTTT 59.476 36.000 0.00 0.00 46.58 3.11
6840 6960 3.320541 TGCAAGTAATTCACACCTTTGGG 59.679 43.478 0.00 0.00 38.88 4.12
6871 6991 5.912149 ATTGAAAGGTATGGAGATAGGCA 57.088 39.130 0.00 0.00 0.00 4.75
6891 7011 1.091771 AATGGTCAAGCGAGATGGCG 61.092 55.000 0.00 0.00 38.18 5.69
6902 7022 2.202987 GATGGCGAGCTGGGTGAG 60.203 66.667 0.00 0.00 0.00 3.51
6941 7062 6.636562 TTCACAACCCAATAATTACAACGT 57.363 33.333 0.00 0.00 0.00 3.99
6978 7099 4.734917 AGACGTTTCACTTTCCGATCTAG 58.265 43.478 0.00 0.00 0.00 2.43
6986 7107 1.757118 CTTTCCGATCTAGGTCCAGCA 59.243 52.381 0.00 0.00 0.00 4.41
6999 7120 3.425713 CAGCAACACGCAGCGGAT 61.426 61.111 21.15 3.04 46.13 4.18
7008 7129 0.673333 ACGCAGCGGATGTGATGAAA 60.673 50.000 21.15 0.00 42.31 2.69
7009 7130 0.027194 CGCAGCGGATGTGATGAAAG 59.973 55.000 7.00 0.00 42.31 2.62
7010 7131 0.379669 GCAGCGGATGTGATGAAAGG 59.620 55.000 0.00 0.00 0.00 3.11
7011 7132 2.013563 GCAGCGGATGTGATGAAAGGA 61.014 52.381 0.00 0.00 0.00 3.36
7012 7133 2.569059 CAGCGGATGTGATGAAAGGAT 58.431 47.619 0.00 0.00 0.00 3.24
7013 7134 2.289820 CAGCGGATGTGATGAAAGGATG 59.710 50.000 0.00 0.00 0.00 3.51
7014 7135 2.171237 AGCGGATGTGATGAAAGGATGA 59.829 45.455 0.00 0.00 0.00 2.92
7015 7136 2.547211 GCGGATGTGATGAAAGGATGAG 59.453 50.000 0.00 0.00 0.00 2.90
7016 7137 3.136763 CGGATGTGATGAAAGGATGAGG 58.863 50.000 0.00 0.00 0.00 3.86
7017 7138 3.432749 CGGATGTGATGAAAGGATGAGGT 60.433 47.826 0.00 0.00 0.00 3.85
7018 7139 4.530875 GGATGTGATGAAAGGATGAGGTT 58.469 43.478 0.00 0.00 0.00 3.50
7019 7140 4.952335 GGATGTGATGAAAGGATGAGGTTT 59.048 41.667 0.00 0.00 0.00 3.27
7020 7141 5.420104 GGATGTGATGAAAGGATGAGGTTTT 59.580 40.000 0.00 0.00 0.00 2.43
7021 7142 6.071165 GGATGTGATGAAAGGATGAGGTTTTT 60.071 38.462 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.317140 GCTGATTATCATTCAGTGGTTCAAGA 59.683 38.462 0.00 0.00 42.12 3.02
15 16 6.206243 GCATAGCTGATTATCATTCAGTGGTT 59.794 38.462 0.00 0.00 42.12 3.67
16 17 5.704515 GCATAGCTGATTATCATTCAGTGGT 59.295 40.000 0.00 0.00 42.12 4.16
67 68 6.317642 GCATTACCTCATTGTGTATGTACCAA 59.682 38.462 0.00 0.00 35.64 3.67
78 79 2.737544 TGGCATGCATTACCTCATTGT 58.262 42.857 21.36 0.00 0.00 2.71
105 106 0.178906 TGACACAGACATGGGAGGGA 60.179 55.000 0.00 0.00 32.53 4.20
142 143 7.768643 TGATCCCAATTAATTCATCCAGGTAT 58.231 34.615 0.00 0.00 0.00 2.73
167 168 6.086011 TGGATCACAATGGGTATTAACCTT 57.914 37.500 0.00 0.00 45.95 3.50
227 228 1.129998 CGAAATCTTCACCTGCTGCAG 59.870 52.381 22.44 22.44 0.00 4.41
279 287 4.581868 TGTATTTAGTTTAACCCAGCGCT 58.418 39.130 2.64 2.64 0.00 5.92
281 289 6.238374 CCATCTGTATTTAGTTTAACCCAGCG 60.238 42.308 0.00 0.00 0.00 5.18
320 328 2.284258 AGCTCCCGCTTCTCCTGT 60.284 61.111 0.00 0.00 46.47 4.00
327 335 2.049627 GATCATCCCAGCTCCCGCTT 62.050 60.000 0.00 0.00 46.47 4.68
444 452 3.129287 CCGCTGAAGTGCAAAGGATATTT 59.871 43.478 0.00 0.00 0.00 1.40
446 454 2.292267 CCGCTGAAGTGCAAAGGATAT 58.708 47.619 0.00 0.00 0.00 1.63
485 493 3.252701 GCATTGCTCGAATCCATCTCAAT 59.747 43.478 0.16 0.00 0.00 2.57
529 537 1.129058 AAACTGAACGGTCCACCTCT 58.871 50.000 0.00 0.00 0.00 3.69
560 568 2.508716 ACATGTGCTTGATCTCTCCCAT 59.491 45.455 0.00 0.00 0.00 4.00
619 627 7.497249 AGTCTATCACTAGCTTTATTTTGGCTG 59.503 37.037 0.00 0.00 37.50 4.85
660 668 1.286248 AATAGTCCGGCCCTCAACTT 58.714 50.000 0.00 0.00 0.00 2.66
699 707 4.633565 GGACAATCATCAACACCTCTTCTC 59.366 45.833 0.00 0.00 0.00 2.87
703 712 2.303022 ACGGACAATCATCAACACCTCT 59.697 45.455 0.00 0.00 0.00 3.69
782 791 4.761235 TGATAATTCGGGCTCGTAGTAG 57.239 45.455 5.57 0.00 37.69 2.57
783 792 5.284079 GTTTGATAATTCGGGCTCGTAGTA 58.716 41.667 5.57 0.00 37.69 1.82
784 793 4.117685 GTTTGATAATTCGGGCTCGTAGT 58.882 43.478 5.57 0.00 37.69 2.73
785 794 3.181774 CGTTTGATAATTCGGGCTCGTAG 59.818 47.826 5.57 0.00 37.69 3.51
786 795 3.117794 CGTTTGATAATTCGGGCTCGTA 58.882 45.455 5.57 0.00 37.69 3.43
787 796 1.931172 CGTTTGATAATTCGGGCTCGT 59.069 47.619 5.57 0.00 37.69 4.18
788 797 1.931172 ACGTTTGATAATTCGGGCTCG 59.069 47.619 0.00 0.00 37.82 5.03
789 798 3.372822 TGAACGTTTGATAATTCGGGCTC 59.627 43.478 0.46 0.00 0.00 4.70
790 799 3.126343 GTGAACGTTTGATAATTCGGGCT 59.874 43.478 0.46 0.00 0.00 5.19
791 800 3.422655 GTGAACGTTTGATAATTCGGGC 58.577 45.455 0.46 0.00 0.00 6.13
792 801 3.368539 TCGTGAACGTTTGATAATTCGGG 59.631 43.478 0.46 0.00 40.80 5.14
798 807 3.120616 CGAGCTTCGTGAACGTTTGATAA 59.879 43.478 0.46 0.00 40.80 1.75
803 812 1.563173 GCGAGCTTCGTGAACGTTT 59.437 52.632 0.46 0.00 42.81 3.60
836 846 1.272092 ACATTTTGAGCAGGGCTAGCA 60.272 47.619 18.24 0.00 39.88 3.49
839 849 3.439857 AGAACATTTTGAGCAGGGCTA 57.560 42.857 0.00 0.00 39.88 3.93
846 856 9.196552 ACAGCTTTATTTTAGAACATTTTGAGC 57.803 29.630 0.00 0.00 0.00 4.26
908 924 3.835395 AGAGACGGTGATTCTCTCCTTTT 59.165 43.478 0.00 0.00 45.63 2.27
910 926 3.094484 AGAGACGGTGATTCTCTCCTT 57.906 47.619 0.00 0.00 45.63 3.36
1042 1064 1.133606 GTGGGAGAGGAGTAGGAGGAG 60.134 61.905 0.00 0.00 0.00 3.69
1043 1065 0.927767 GTGGGAGAGGAGTAGGAGGA 59.072 60.000 0.00 0.00 0.00 3.71
1044 1066 0.930726 AGTGGGAGAGGAGTAGGAGG 59.069 60.000 0.00 0.00 0.00 4.30
1045 1067 2.661718 GAAGTGGGAGAGGAGTAGGAG 58.338 57.143 0.00 0.00 0.00 3.69
1046 1068 1.288335 GGAAGTGGGAGAGGAGTAGGA 59.712 57.143 0.00 0.00 0.00 2.94
1047 1069 1.289530 AGGAAGTGGGAGAGGAGTAGG 59.710 57.143 0.00 0.00 0.00 3.18
1048 1070 2.243736 AGAGGAAGTGGGAGAGGAGTAG 59.756 54.545 0.00 0.00 0.00 2.57
1049 1071 2.242708 GAGAGGAAGTGGGAGAGGAGTA 59.757 54.545 0.00 0.00 0.00 2.59
1050 1072 1.006639 GAGAGGAAGTGGGAGAGGAGT 59.993 57.143 0.00 0.00 0.00 3.85
1116 1138 2.649034 GTGCCCTCGAACTCGTCA 59.351 61.111 0.00 0.00 40.80 4.35
1372 1394 1.243902 GAGCAACCAAATCGGGAACA 58.756 50.000 0.00 0.00 40.22 3.18
1401 1423 1.698165 CAAGCAACGAGAGCTACGAA 58.302 50.000 17.48 0.00 42.53 3.85
1433 1455 3.095912 TCACGGGATCAGGAAGTAGAA 57.904 47.619 0.00 0.00 0.00 2.10
1456 1478 1.672854 CCAATCACTGGCTGCCCATG 61.673 60.000 17.53 14.29 41.21 3.66
1466 1488 1.134280 CCTAGCAGGGTCCAATCACTG 60.134 57.143 0.00 0.00 41.31 3.66
1526 1549 1.534163 GTCTCCAAACCAAACGGCTAC 59.466 52.381 0.00 0.00 0.00 3.58
1531 1554 2.285083 TCACTGTCTCCAAACCAAACG 58.715 47.619 0.00 0.00 0.00 3.60
1546 1569 3.961477 TTCGAACCACACAATTCACTG 57.039 42.857 0.00 0.00 0.00 3.66
1645 1670 4.142227 ACTGAACCGTCCTGATGTATACAC 60.142 45.833 7.96 3.26 0.00 2.90
1646 1671 4.021229 ACTGAACCGTCCTGATGTATACA 58.979 43.478 8.27 8.27 0.00 2.29
1647 1672 4.650754 ACTGAACCGTCCTGATGTATAC 57.349 45.455 0.00 0.00 0.00 1.47
1648 1673 5.670792 AAACTGAACCGTCCTGATGTATA 57.329 39.130 0.00 0.00 0.00 1.47
1649 1674 4.553330 AAACTGAACCGTCCTGATGTAT 57.447 40.909 0.00 0.00 0.00 2.29
1650 1675 4.062293 CAAAACTGAACCGTCCTGATGTA 58.938 43.478 0.00 0.00 0.00 2.29
1651 1676 2.878406 CAAAACTGAACCGTCCTGATGT 59.122 45.455 0.00 0.00 0.00 3.06
1652 1677 2.878406 ACAAAACTGAACCGTCCTGATG 59.122 45.455 0.00 0.00 0.00 3.07
1653 1678 3.208747 ACAAAACTGAACCGTCCTGAT 57.791 42.857 0.00 0.00 0.00 2.90
1654 1679 2.680841 CAACAAAACTGAACCGTCCTGA 59.319 45.455 0.00 0.00 0.00 3.86
1710 1735 6.553953 TTATCAACCTTATCAGCACTACCA 57.446 37.500 0.00 0.00 0.00 3.25
1793 1818 4.024556 GTGACAACTGATTTCTGTGACCAG 60.025 45.833 0.00 0.00 40.25 4.00
1840 1865 8.397906 GCAATATGTGAGTAAGCAATGTAGAAA 58.602 33.333 0.00 0.00 0.00 2.52
1869 1894 7.660617 CACCTCACCTCGTAGTTATTCTCTATA 59.339 40.741 0.00 0.00 0.00 1.31
1878 1903 3.079578 CTGTCACCTCACCTCGTAGTTA 58.920 50.000 0.00 0.00 0.00 2.24
2041 2066 0.391130 CGAGGGAACGCCAATTCTGA 60.391 55.000 0.00 0.00 35.15 3.27
2052 2077 2.003301 GATGTTTGCTCTCGAGGGAAC 58.997 52.381 18.81 13.21 0.00 3.62
2060 2085 7.608308 AAAGAATAGACTGATGTTTGCTCTC 57.392 36.000 0.00 0.00 0.00 3.20
2099 2124 4.815533 AGATCATGTGCTAACTGACACT 57.184 40.909 0.00 0.00 37.68 3.55
2184 2209 7.462590 TCTAGGCAAGAGAATACTAGCTATCA 58.537 38.462 0.00 0.00 33.05 2.15
2337 2362 3.281727 ACACTCTCTGCTGGAAAAACA 57.718 42.857 0.00 0.00 0.00 2.83
2473 2498 2.445427 CACAAGGCCATGGTGTAATCA 58.555 47.619 14.67 0.00 0.00 2.57
2545 2570 2.039624 GAGGAGAGAGGGGTGGCA 59.960 66.667 0.00 0.00 0.00 4.92
2552 2577 1.682854 GAGCATGTCAGAGGAGAGAGG 59.317 57.143 0.00 0.00 0.00 3.69
2567 2592 3.438017 GAAGCGCGGGAGAGAGCAT 62.438 63.158 8.83 0.00 0.00 3.79
2623 2660 1.652563 CGAGGCGATATGGACGACA 59.347 57.895 0.00 0.00 41.61 4.35
2705 2742 0.883833 GCAAGGTACAGCAGCATGTT 59.116 50.000 0.00 0.00 39.31 2.71
2769 2806 7.823745 TCTGAAGCAAAAGTAAATTCCTTCT 57.176 32.000 0.00 0.00 0.00 2.85
2807 2845 4.504858 AGGGAGTAGAATACAAGCAAACG 58.495 43.478 0.00 0.00 46.26 3.60
2822 2860 9.377238 GACTTATATTTAGGAAAGGAGGGAGTA 57.623 37.037 0.00 0.00 0.00 2.59
2823 2861 8.074991 AGACTTATATTTAGGAAAGGAGGGAGT 58.925 37.037 0.00 0.00 0.00 3.85
2824 2862 8.499288 AGACTTATATTTAGGAAAGGAGGGAG 57.501 38.462 0.00 0.00 0.00 4.30
2825 2863 8.871570 AAGACTTATATTTAGGAAAGGAGGGA 57.128 34.615 0.00 0.00 0.00 4.20
2826 2864 9.343539 CAAAGACTTATATTTAGGAAAGGAGGG 57.656 37.037 0.00 0.00 0.00 4.30
2827 2865 8.841300 GCAAAGACTTATATTTAGGAAAGGAGG 58.159 37.037 0.00 0.00 0.00 4.30
2828 2866 9.396022 TGCAAAGACTTATATTTAGGAAAGGAG 57.604 33.333 0.00 0.00 0.00 3.69
2829 2867 9.396022 CTGCAAAGACTTATATTTAGGAAAGGA 57.604 33.333 0.00 0.00 0.00 3.36
2830 2868 9.396022 TCTGCAAAGACTTATATTTAGGAAAGG 57.604 33.333 0.00 0.00 0.00 3.11
2838 2876 9.638176 ATGGAATCTCTGCAAAGACTTATATTT 57.362 29.630 0.00 0.00 0.00 1.40
2839 2877 9.282569 GATGGAATCTCTGCAAAGACTTATATT 57.717 33.333 0.00 0.00 41.17 1.28
2840 2878 8.435187 TGATGGAATCTCTGCAAAGACTTATAT 58.565 33.333 0.00 0.00 45.81 0.86
2841 2879 7.795047 TGATGGAATCTCTGCAAAGACTTATA 58.205 34.615 0.00 0.00 45.81 0.98
2842 2880 6.656902 TGATGGAATCTCTGCAAAGACTTAT 58.343 36.000 0.00 0.00 45.81 1.73
2843 2881 6.053632 TGATGGAATCTCTGCAAAGACTTA 57.946 37.500 0.00 0.00 45.81 2.24
2844 2882 4.914983 TGATGGAATCTCTGCAAAGACTT 58.085 39.130 0.00 0.00 45.81 3.01
2845 2883 4.564782 TGATGGAATCTCTGCAAAGACT 57.435 40.909 0.00 0.00 45.81 3.24
2846 2884 4.036498 CCATGATGGAATCTCTGCAAAGAC 59.964 45.833 5.27 0.00 45.81 3.01
2847 2885 4.080186 TCCATGATGGAATCTCTGCAAAGA 60.080 41.667 12.63 0.00 45.00 2.52
2848 2886 4.204799 TCCATGATGGAATCTCTGCAAAG 58.795 43.478 12.63 0.00 45.00 2.77
2849 2887 4.239428 TCCATGATGGAATCTCTGCAAA 57.761 40.909 12.63 0.00 45.00 3.68
2850 2888 3.937778 TCCATGATGGAATCTCTGCAA 57.062 42.857 12.63 0.00 45.00 4.08
2860 2898 4.262036 GCTTCGTATGTAGTCCATGATGGA 60.262 45.833 10.75 10.75 45.98 3.41
2861 2899 3.990469 GCTTCGTATGTAGTCCATGATGG 59.010 47.826 4.74 4.74 39.43 3.51
2862 2900 4.620982 TGCTTCGTATGTAGTCCATGATG 58.379 43.478 0.00 0.00 34.86 3.07
2863 2901 4.937201 TGCTTCGTATGTAGTCCATGAT 57.063 40.909 0.00 0.00 34.86 2.45
2864 2902 4.081917 TGTTGCTTCGTATGTAGTCCATGA 60.082 41.667 0.00 0.00 34.86 3.07
2865 2903 4.180817 TGTTGCTTCGTATGTAGTCCATG 58.819 43.478 0.00 0.00 34.86 3.66
2866 2904 4.465632 TGTTGCTTCGTATGTAGTCCAT 57.534 40.909 0.00 0.00 37.58 3.41
2867 2905 3.945981 TGTTGCTTCGTATGTAGTCCA 57.054 42.857 0.00 0.00 0.00 4.02
2868 2906 4.430007 TCATGTTGCTTCGTATGTAGTCC 58.570 43.478 0.00 0.00 0.00 3.85
2869 2907 5.004821 CACTCATGTTGCTTCGTATGTAGTC 59.995 44.000 0.00 0.00 0.00 2.59
2870 2908 4.864806 CACTCATGTTGCTTCGTATGTAGT 59.135 41.667 0.00 0.00 0.00 2.73
2871 2909 5.102313 TCACTCATGTTGCTTCGTATGTAG 58.898 41.667 0.00 0.00 0.00 2.74
2872 2910 5.066968 TCACTCATGTTGCTTCGTATGTA 57.933 39.130 0.00 0.00 0.00 2.29
2873 2911 3.925379 TCACTCATGTTGCTTCGTATGT 58.075 40.909 0.00 0.00 0.00 2.29
2874 2912 4.926860 TTCACTCATGTTGCTTCGTATG 57.073 40.909 0.00 0.00 0.00 2.39
2875 2913 5.423015 AGATTCACTCATGTTGCTTCGTAT 58.577 37.500 0.00 0.00 0.00 3.06
2876 2914 4.820897 AGATTCACTCATGTTGCTTCGTA 58.179 39.130 0.00 0.00 0.00 3.43
2877 2915 3.668447 AGATTCACTCATGTTGCTTCGT 58.332 40.909 0.00 0.00 0.00 3.85
2878 2916 4.627035 TGTAGATTCACTCATGTTGCTTCG 59.373 41.667 0.00 0.00 0.00 3.79
2879 2917 5.641209 AGTGTAGATTCACTCATGTTGCTTC 59.359 40.000 0.00 0.00 44.07 3.86
2880 2918 5.555017 AGTGTAGATTCACTCATGTTGCTT 58.445 37.500 0.00 0.00 44.07 3.91
2881 2919 5.157940 AGTGTAGATTCACTCATGTTGCT 57.842 39.130 0.00 0.00 44.07 3.91
2891 2929 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
2892 2930 9.534565 GTAGATGCATTTTAGAGTGTAGATTCA 57.465 33.333 0.00 0.00 0.00 2.57
2893 2931 9.534565 TGTAGATGCATTTTAGAGTGTAGATTC 57.465 33.333 0.00 0.00 0.00 2.52
2896 2934 9.967346 GTATGTAGATGCATTTTAGAGTGTAGA 57.033 33.333 0.00 0.00 0.00 2.59
2897 2935 9.750125 TGTATGTAGATGCATTTTAGAGTGTAG 57.250 33.333 0.00 0.00 0.00 2.74
2899 2937 9.265901 GATGTATGTAGATGCATTTTAGAGTGT 57.734 33.333 0.00 0.00 35.26 3.55
2900 2938 8.715998 GGATGTATGTAGATGCATTTTAGAGTG 58.284 37.037 0.00 0.00 35.26 3.51
2901 2939 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
2902 2940 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
2903 2941 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
2904 2942 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
2919 2957 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
2920 2958 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
2922 2960 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
2923 2961 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
2924 2962 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
2925 2963 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
2926 2964 6.538742 AGAAATTTCACTATGGACCACATACG 59.461 38.462 19.99 0.00 41.03 3.06
2927 2965 7.865706 AGAAATTTCACTATGGACCACATAC 57.134 36.000 19.99 0.00 41.03 2.39
2928 2966 8.544622 TGTAGAAATTTCACTATGGACCACATA 58.455 33.333 19.99 0.00 41.03 2.29
2929 2967 7.402054 TGTAGAAATTTCACTATGGACCACAT 58.598 34.615 19.99 0.00 43.68 3.21
2930 2968 6.774673 TGTAGAAATTTCACTATGGACCACA 58.225 36.000 19.99 5.40 0.00 4.17
2931 2969 7.681939 TTGTAGAAATTTCACTATGGACCAC 57.318 36.000 19.99 3.25 0.00 4.16
2932 2970 8.160765 TCTTTGTAGAAATTTCACTATGGACCA 58.839 33.333 19.99 0.00 0.00 4.02
2933 2971 8.451748 GTCTTTGTAGAAATTTCACTATGGACC 58.548 37.037 19.99 0.00 30.65 4.46
2934 2972 9.220767 AGTCTTTGTAGAAATTTCACTATGGAC 57.779 33.333 19.99 17.70 30.65 4.02
2935 2973 9.793259 AAGTCTTTGTAGAAATTTCACTATGGA 57.207 29.630 19.99 8.45 30.65 3.41
2952 2990 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2953 2991 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2954 2992 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2955 2993 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2956 2994 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2957 2995 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2958 2996 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2959 2997 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2960 2998 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2961 2999 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2962 3000 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2963 3001 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2964 3002 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2965 3003 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2966 3004 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
2967 3005 4.803329 AATACTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
2968 3006 3.684408 AATACTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
2969 3007 5.362143 AGTTAAATACTACTCCCTCCGTTCC 59.638 44.000 0.00 0.00 34.56 3.62
2970 3008 6.462552 AGTTAAATACTACTCCCTCCGTTC 57.537 41.667 0.00 0.00 34.56 3.95
2971 3009 7.122048 ACTAGTTAAATACTACTCCCTCCGTT 58.878 38.462 0.00 0.00 38.33 4.44
2972 3010 6.667661 ACTAGTTAAATACTACTCCCTCCGT 58.332 40.000 0.00 0.00 38.33 4.69
2973 3011 7.067981 ACAACTAGTTAAATACTACTCCCTCCG 59.932 40.741 8.04 0.00 38.33 4.63
2974 3012 8.303780 ACAACTAGTTAAATACTACTCCCTCC 57.696 38.462 8.04 0.00 38.33 4.30
2975 3013 9.187996 AGACAACTAGTTAAATACTACTCCCTC 57.812 37.037 8.04 0.00 38.33 4.30
2976 3014 9.187996 GAGACAACTAGTTAAATACTACTCCCT 57.812 37.037 8.04 0.00 38.33 4.20
2977 3015 8.964772 TGAGACAACTAGTTAAATACTACTCCC 58.035 37.037 8.04 0.00 38.33 4.30
3017 3055 1.822990 CTTGAGGGCAGCATTGACATT 59.177 47.619 0.00 0.00 32.23 2.71
3025 3063 2.637872 ACTTTACTACTTGAGGGCAGCA 59.362 45.455 0.00 0.00 0.00 4.41
3150 3190 4.454678 TCCTCGTAAATCGGAGCTTAGTA 58.545 43.478 0.00 0.00 40.32 1.82
3404 3444 8.691797 AGAAACAAAATGAAGTTAGCCAACTAA 58.308 29.630 0.00 0.00 44.41 2.24
3411 3451 6.970484 TGGAGAGAAACAAAATGAAGTTAGC 58.030 36.000 0.00 0.00 0.00 3.09
3422 3462 9.177608 CATAATGATAGGTTGGAGAGAAACAAA 57.822 33.333 0.00 0.00 0.00 2.83
3541 3582 4.019501 TGGCCATTGCTTCATGGTAATTTT 60.020 37.500 0.00 0.00 40.02 1.82
3821 3863 7.455641 TGTAATTATGAACCCACGAAAATGT 57.544 32.000 0.00 0.00 0.00 2.71
3865 3907 2.092429 TCAAACAGCATCCCACCCTATC 60.092 50.000 0.00 0.00 0.00 2.08
3928 3970 1.462616 CTGCCATTTTCCGTGGATCA 58.537 50.000 0.00 0.00 39.12 2.92
3989 4031 8.672823 AACGAAAATTGAATATAGTCTACCCC 57.327 34.615 1.40 0.00 0.00 4.95
4254 4296 0.679002 GGGAAGGAACCTTAACCGCC 60.679 60.000 6.06 3.28 36.26 6.13
4256 4298 1.626825 TCAGGGAAGGAACCTTAACCG 59.373 52.381 15.96 12.60 37.87 4.44
4267 4309 5.277857 ACGTCTTACATTATCAGGGAAGG 57.722 43.478 0.00 0.00 0.00 3.46
4269 4311 6.338146 CAGAACGTCTTACATTATCAGGGAA 58.662 40.000 0.00 0.00 0.00 3.97
4270 4312 5.681437 GCAGAACGTCTTACATTATCAGGGA 60.681 44.000 0.00 0.00 0.00 4.20
4271 4313 4.508124 GCAGAACGTCTTACATTATCAGGG 59.492 45.833 0.00 0.00 0.00 4.45
4272 4314 5.109210 TGCAGAACGTCTTACATTATCAGG 58.891 41.667 0.00 0.00 0.00 3.86
4273 4315 6.647212 TTGCAGAACGTCTTACATTATCAG 57.353 37.500 0.00 0.00 0.00 2.90
4274 4316 7.428282 TTTTGCAGAACGTCTTACATTATCA 57.572 32.000 0.00 0.00 0.00 2.15
4275 4317 7.006210 CGTTTTTGCAGAACGTCTTACATTATC 59.994 37.037 21.96 0.00 43.44 1.75
4276 4318 6.795114 CGTTTTTGCAGAACGTCTTACATTAT 59.205 34.615 21.96 0.00 43.44 1.28
4342 4424 4.457257 GGAACAGAAACTGCTAGCTGATTT 59.543 41.667 26.29 20.39 34.37 2.17
4446 4528 7.074751 AGGTAGTTATAACTAGAAGGGCTCCTA 59.925 40.741 22.81 0.00 41.81 2.94
4447 4529 6.076653 GGTAGTTATAACTAGAAGGGCTCCT 58.923 44.000 22.81 0.00 41.81 3.69
4448 4530 6.015265 CAGGTAGTTATAACTAGAAGGGCTCC 60.015 46.154 22.81 17.34 41.81 4.70
4449 4531 6.550481 ACAGGTAGTTATAACTAGAAGGGCTC 59.450 42.308 22.81 10.34 41.81 4.70
4450 4532 6.442091 ACAGGTAGTTATAACTAGAAGGGCT 58.558 40.000 22.81 0.11 41.81 5.19
4451 4533 6.728089 ACAGGTAGTTATAACTAGAAGGGC 57.272 41.667 22.81 11.57 41.81 5.19
4452 4534 9.955102 AAAAACAGGTAGTTATAACTAGAAGGG 57.045 33.333 22.81 14.00 41.81 3.95
4459 4541 8.045507 GGCTCCTAAAAACAGGTAGTTATAACT 58.954 37.037 21.35 21.35 40.26 2.24
4460 4542 7.281774 GGGCTCCTAAAAACAGGTAGTTATAAC 59.718 40.741 7.57 7.57 40.26 1.89
4461 4543 7.183293 AGGGCTCCTAAAAACAGGTAGTTATAA 59.817 37.037 0.00 0.00 33.03 0.98
4462 4544 6.675303 AGGGCTCCTAAAAACAGGTAGTTATA 59.325 38.462 0.00 0.00 33.03 0.98
4463 4545 5.491439 AGGGCTCCTAAAAACAGGTAGTTAT 59.509 40.000 0.00 0.00 33.03 1.89
4464 4546 4.848086 AGGGCTCCTAAAAACAGGTAGTTA 59.152 41.667 0.00 0.00 33.03 2.24
4465 4547 3.656264 AGGGCTCCTAAAAACAGGTAGTT 59.344 43.478 0.00 0.00 34.96 2.24
4466 4548 3.257578 AGGGCTCCTAAAAACAGGTAGT 58.742 45.455 0.00 0.00 36.99 2.73
4467 4549 4.019231 AGAAGGGCTCCTAAAAACAGGTAG 60.019 45.833 0.00 0.00 36.99 3.18
4468 4550 3.914435 AGAAGGGCTCCTAAAAACAGGTA 59.086 43.478 0.00 0.00 36.99 3.08
4469 4551 2.716969 AGAAGGGCTCCTAAAAACAGGT 59.283 45.455 0.00 0.00 36.99 4.00
4470 4552 3.441500 AGAAGGGCTCCTAAAAACAGG 57.558 47.619 0.00 0.00 37.00 4.00
4471 4553 5.167303 ACTAGAAGGGCTCCTAAAAACAG 57.833 43.478 0.00 0.00 31.13 3.16
4472 4554 5.578157 AACTAGAAGGGCTCCTAAAAACA 57.422 39.130 0.00 0.00 31.13 2.83
4473 4555 9.107177 GTTATAACTAGAAGGGCTCCTAAAAAC 57.893 37.037 8.41 0.00 31.13 2.43
4474 4556 9.054580 AGTTATAACTAGAAGGGCTCCTAAAAA 57.945 33.333 16.60 0.00 37.52 1.94
4475 4557 8.619683 AGTTATAACTAGAAGGGCTCCTAAAA 57.380 34.615 16.60 0.00 37.52 1.52
4476 4558 9.140874 GTAGTTATAACTAGAAGGGCTCCTAAA 57.859 37.037 22.81 0.00 41.81 1.85
4477 4559 7.727634 GGTAGTTATAACTAGAAGGGCTCCTAA 59.272 40.741 22.81 0.00 41.81 2.69
4478 4560 7.074751 AGGTAGTTATAACTAGAAGGGCTCCTA 59.925 40.741 22.81 0.00 41.81 2.94
4559 4641 4.476628 TCTGACATGCAGCTTCATTAGA 57.523 40.909 0.00 0.00 44.52 2.10
4570 4652 1.881973 GCAAAGAGGTTCTGACATGCA 59.118 47.619 0.00 0.00 33.00 3.96
4906 4988 6.128553 TGACTCTTTCTAGCAAATAAGCAACG 60.129 38.462 0.00 0.00 36.85 4.10
4926 5008 4.457834 ACATGCTAGGTACAAGTGACTC 57.542 45.455 0.00 0.00 0.00 3.36
4927 5009 4.142138 GCTACATGCTAGGTACAAGTGACT 60.142 45.833 0.00 0.00 38.95 3.41
4928 5010 4.113354 GCTACATGCTAGGTACAAGTGAC 58.887 47.826 0.00 0.00 38.95 3.67
4933 5015 5.351948 TTCATGCTACATGCTAGGTACAA 57.648 39.130 2.65 0.00 43.37 2.41
4945 5027 9.860650 ATATACCATTAAAGGTTTCATGCTACA 57.139 29.630 7.83 0.00 43.08 2.74
4975 5057 7.507733 ACTACAGTACCGATTTATCACCTAG 57.492 40.000 0.00 0.00 0.00 3.02
5324 5415 8.912988 CCATAATTGCAGGAGTTTAATTTAGGA 58.087 33.333 0.00 0.00 0.00 2.94
5340 5431 9.800433 CTGTCATGTTATTTTACCATAATTGCA 57.200 29.630 0.00 0.00 0.00 4.08
5362 5453 3.693085 ACATCAACATGCATCCTTCTGTC 59.307 43.478 0.00 0.00 32.57 3.51
5408 5499 5.527951 AGCATTATCTTTCATCAGCAGACAG 59.472 40.000 0.00 0.00 0.00 3.51
5445 5536 3.565307 TGGCTGGAACAAGAATTTCAGT 58.435 40.909 0.00 0.00 38.70 3.41
5550 5641 5.904941 TGGTGCTCTGCATATTATTTTTGG 58.095 37.500 0.00 0.00 41.91 3.28
5616 5707 6.761099 TGTTCTTTAGCAACAGGTTTGTTA 57.239 33.333 0.00 0.00 45.53 2.41
5626 5717 5.034797 GGTTTGACACTGTTCTTTAGCAAC 58.965 41.667 0.00 0.00 0.00 4.17
5642 5733 4.985538 TTCGAGAGAGGATAGGTTTGAC 57.014 45.455 0.00 0.00 43.69 3.18
5742 5833 1.410004 TCACTTCACCGAGTCCACTT 58.590 50.000 0.00 0.00 0.00 3.16
6047 6148 6.964807 TGGCATGCAAAGAATATATGAAGT 57.035 33.333 21.36 0.00 0.00 3.01
6052 6153 8.331740 AGTACCTATGGCATGCAAAGAATATAT 58.668 33.333 21.36 0.00 0.00 0.86
6113 6216 1.011333 AGGAACGGTTGTGACAAACG 58.989 50.000 31.35 31.35 0.00 3.60
6139 6242 9.154847 ACTTAAACGATGTTGGGTATAACTTAC 57.845 33.333 0.00 0.00 0.00 2.34
6143 6246 8.505625 TGAAACTTAAACGATGTTGGGTATAAC 58.494 33.333 0.00 0.00 0.00 1.89
6148 6251 5.127491 TCTGAAACTTAAACGATGTTGGGT 58.873 37.500 0.00 0.00 0.00 4.51
6162 6265 7.587037 TCCATTCTTTGTGAATCTGAAACTT 57.413 32.000 0.00 0.00 43.00 2.66
6187 6290 2.050144 GTCAAGCAGATCCATCCCCTA 58.950 52.381 0.00 0.00 0.00 3.53
6227 6332 2.094700 TGAGTCTTGTTGCCGCTAGTAG 60.095 50.000 0.00 0.00 0.00 2.57
6332 6441 4.257731 TCTATCAACAGGCAAAATACGCA 58.742 39.130 0.00 0.00 0.00 5.24
6358 6468 1.094785 CGGGTTAAAGGCTGATGGTG 58.905 55.000 0.00 0.00 0.00 4.17
6367 6477 2.287970 GCAGTTTGAACCGGGTTAAAGG 60.288 50.000 10.11 6.82 0.00 3.11
6375 6485 1.080569 GGCATGCAGTTTGAACCGG 60.081 57.895 21.36 0.00 0.00 5.28
6432 6543 6.375455 AGGAAGGTTATGAGCAAAACATACAG 59.625 38.462 0.00 0.00 31.26 2.74
6453 6564 3.059461 GCACGAAAACGTTGATACAGGAA 60.059 43.478 0.00 0.00 0.00 3.36
6523 6639 1.725641 CACCAAGAGTAGCATTCGCA 58.274 50.000 0.00 0.00 42.27 5.10
6700 6820 9.734984 AACATTTTAGTACAGCCTAAATACACT 57.265 29.630 0.00 0.00 36.92 3.55
6727 6847 5.069119 TGGCTACACATGTTCTATACAGGAG 59.931 44.000 0.00 0.00 40.94 3.69
6746 6866 8.555361 GCAAAATTTAAAGTCAAAACATGGCTA 58.445 29.630 0.00 0.00 45.30 3.93
6749 6869 9.224058 CTTGCAAAATTTAAAGTCAAAACATGG 57.776 29.630 0.00 0.00 0.00 3.66
6814 6934 6.018832 CCAAAGGTGTGAATTACTTGCAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
6837 6957 6.014669 CCATACCTTTCAATTTTTCTCACCCA 60.015 38.462 0.00 0.00 0.00 4.51
6840 6960 8.110860 TCTCCATACCTTTCAATTTTTCTCAC 57.889 34.615 0.00 0.00 0.00 3.51
6871 6991 1.098050 GCCATCTCGCTTGACCATTT 58.902 50.000 0.00 0.00 0.00 2.32
6913 7033 8.519526 GTTGTAATTATTGGGTTGTGAATCTCA 58.480 33.333 0.00 0.00 0.00 3.27
6923 7043 6.431852 AGCAGTTACGTTGTAATTATTGGGTT 59.568 34.615 0.00 0.00 0.00 4.11
6932 7053 4.035792 TGTGCAAAGCAGTTACGTTGTAAT 59.964 37.500 0.00 0.00 40.08 1.89
6941 7062 2.285083 ACGTCTTGTGCAAAGCAGTTA 58.715 42.857 0.00 0.00 40.08 2.24
6978 7099 4.030452 GCTGCGTGTTGCTGGACC 62.030 66.667 0.00 0.00 46.63 4.46
6986 7107 1.375908 ATCACATCCGCTGCGTGTT 60.376 52.632 21.59 4.79 32.42 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.