Multiple sequence alignment - TraesCS4B01G084800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G084800 chr4B 100.000 3797 0 0 1833 5629 83133229 83137025 0.000000e+00 7012.0
1 TraesCS4B01G084800 chr4B 100.000 1444 0 0 1 1444 83131397 83132840 0.000000e+00 2667.0
2 TraesCS4B01G084800 chr4B 91.667 396 28 4 5236 5628 425086527 425086134 1.380000e-150 544.0
3 TraesCS4B01G084800 chr4B 98.773 163 2 0 4099 4261 164764847 164765009 1.980000e-74 291.0
4 TraesCS4B01G084800 chr4A 95.191 1310 47 6 2764 4070 540443050 540441754 0.000000e+00 2056.0
5 TraesCS4B01G084800 chr4A 85.917 1477 93 58 30 1444 540445476 540444053 0.000000e+00 1469.0
6 TraesCS4B01G084800 chr4A 92.167 600 35 7 4260 4852 540441733 540441139 0.000000e+00 837.0
7 TraesCS4B01G084800 chr4A 91.410 454 19 5 2257 2707 540443608 540443172 6.240000e-169 604.0
8 TraesCS4B01G084800 chr4A 84.906 212 16 7 4919 5115 540441115 540440905 3.440000e-47 200.0
9 TraesCS4B01G084800 chr4A 96.552 116 3 1 5119 5234 709199052 709198938 2.070000e-44 191.0
10 TraesCS4B01G084800 chr4A 96.386 83 1 2 2704 2786 540443142 540443062 9.840000e-28 135.0
11 TraesCS4B01G084800 chr4A 90.541 74 4 2 2185 2256 733438434 733438362 1.670000e-15 95.3
12 TraesCS4B01G084800 chr4D 95.387 1279 41 5 2822 4100 56708203 56709463 0.000000e+00 2019.0
13 TraesCS4B01G084800 chr4D 87.178 1357 63 48 117 1444 56705940 56707214 0.000000e+00 1439.0
14 TraesCS4B01G084800 chr4D 90.687 655 50 9 4260 4906 56709462 56710113 0.000000e+00 861.0
15 TraesCS4B01G084800 chr4D 96.452 451 12 2 2257 2707 56707654 56708100 0.000000e+00 741.0
16 TraesCS4B01G084800 chr4D 95.890 73 2 1 2704 2776 56708130 56708201 3.560000e-22 117.0
17 TraesCS4B01G084800 chr7B 95.718 397 15 2 5233 5628 655584515 655584120 6.150000e-179 638.0
18 TraesCS4B01G084800 chr7B 91.919 396 27 5 5236 5628 213481884 213482277 2.960000e-152 549.0
19 TraesCS4B01G084800 chr7B 96.988 166 5 0 4099 4264 736027868 736027703 4.290000e-71 279.0
20 TraesCS4B01G084800 chr7B 99.153 118 1 0 5118 5235 655584716 655584599 4.420000e-51 213.0
21 TraesCS4B01G084800 chr3B 94.670 394 20 1 5236 5628 608693862 608693469 1.340000e-170 610.0
22 TraesCS4B01G084800 chr3B 90.428 397 17 2 5233 5628 708490533 708490157 2.340000e-138 503.0
23 TraesCS4B01G084800 chr3B 97.458 118 3 0 5119 5236 708490733 708490616 9.560000e-48 202.0
24 TraesCS4B01G084800 chr3B 95.763 118 5 0 5119 5236 608694064 608693947 2.070000e-44 191.0
25 TraesCS4B01G084800 chr3B 91.429 70 4 1 2188 2255 154203814 154203883 1.670000e-15 95.3
26 TraesCS4B01G084800 chr6A 93.333 375 22 3 5248 5621 480590284 480589912 8.240000e-153 551.0
27 TraesCS4B01G084800 chr6A 91.549 71 2 2 2188 2255 460643365 460643434 1.670000e-15 95.3
28 TraesCS4B01G084800 chr2B 89.646 396 35 6 5236 5628 244792373 244791981 3.030000e-137 499.0
29 TraesCS4B01G084800 chr2B 93.923 181 8 3 4099 4278 683308693 683308515 2.580000e-68 270.0
30 TraesCS4B01G084800 chr2B 95.833 120 4 1 5116 5235 715024981 715025099 5.760000e-45 193.0
31 TraesCS4B01G084800 chr2B 95.726 117 4 1 5119 5235 156316549 156316434 2.680000e-43 187.0
32 TraesCS4B01G084800 chr3D 89.873 395 29 8 5236 5629 398278492 398278108 1.090000e-136 497.0
33 TraesCS4B01G084800 chr3D 97.024 168 5 0 4095 4262 596058971 596059138 3.320000e-72 283.0
34 TraesCS4B01G084800 chr3D 94.872 117 5 1 5119 5235 604407368 604407253 1.250000e-41 182.0
35 TraesCS4B01G084800 chr5D 89.673 397 20 3 5233 5628 232600672 232601048 2.360000e-133 486.0
36 TraesCS4B01G084800 chr5D 96.552 116 3 1 5120 5235 232600474 232600588 2.070000e-44 191.0
37 TraesCS4B01G084800 chr6B 98.171 164 3 0 4098 4261 233030255 233030092 2.570000e-73 287.0
38 TraesCS4B01G084800 chr5B 98.160 163 3 0 4099 4261 678119820 678119658 9.230000e-73 285.0
39 TraesCS4B01G084800 chr5B 89.610 77 1 6 2188 2263 356213736 356213806 2.160000e-14 91.6
40 TraesCS4B01G084800 chr1B 97.059 170 4 1 4096 4264 603293279 603293110 9.230000e-73 285.0
41 TraesCS4B01G084800 chr1B 97.006 167 5 0 4099 4265 259515324 259515158 1.190000e-71 281.0
42 TraesCS4B01G084800 chr7A 93.889 180 7 3 4098 4274 699482889 699482711 9.300000e-68 268.0
43 TraesCS4B01G084800 chr7A 89.610 77 1 4 2188 2263 567475426 567475356 2.160000e-14 91.6
44 TraesCS4B01G084800 chr1D 97.541 122 3 0 5119 5240 366472469 366472348 5.710000e-50 209.0
45 TraesCS4B01G084800 chrUn 81.395 172 29 2 2413 2584 112410829 112410661 2.740000e-28 137.0
46 TraesCS4B01G084800 chrUn 90.541 74 4 2 2185 2256 371076235 371076307 1.670000e-15 95.3
47 TraesCS4B01G084800 chr1A 92.105 76 4 2 2188 2262 558328660 558328734 7.710000e-19 106.0
48 TraesCS4B01G084800 chr7D 90.000 70 5 2 2186 2255 516034623 516034690 7.770000e-14 89.8
49 TraesCS4B01G084800 chr2D 87.654 81 4 3 2187 2262 285063023 285062944 7.770000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G084800 chr4B 83131397 83137025 5628 False 4839.5 7012 100.000000 1 5629 2 chr4B.!!$F2 5628
1 TraesCS4B01G084800 chr4A 540440905 540445476 4571 True 883.5 2056 90.996167 30 5115 6 chr4A.!!$R3 5085
2 TraesCS4B01G084800 chr4D 56705940 56710113 4173 False 1035.4 2019 93.118800 117 4906 5 chr4D.!!$F1 4789
3 TraesCS4B01G084800 chr7B 655584120 655584716 596 True 425.5 638 97.435500 5118 5628 2 chr7B.!!$R2 510
4 TraesCS4B01G084800 chr3B 608693469 608694064 595 True 400.5 610 95.216500 5119 5628 2 chr3B.!!$R1 509
5 TraesCS4B01G084800 chr3B 708490157 708490733 576 True 352.5 503 93.943000 5119 5628 2 chr3B.!!$R2 509
6 TraesCS4B01G084800 chr5D 232600474 232601048 574 False 338.5 486 93.112500 5120 5628 2 chr5D.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.534203 TTCTTTCTTTCGCAGGCGGT 60.534 50.0 14.24 0.0 40.25 5.68 F
70 71 0.949105 TCTTTCTTTCGCAGGCGGTC 60.949 55.0 14.24 0.0 40.25 4.79 F
1194 1261 1.045407 ACGCCTTTTCCCCCTTTTTC 58.955 50.0 0.00 0.0 0.00 2.29 F
2145 2221 0.107643 TGTGGAGTGTGCATTTCGGA 59.892 50.0 0.00 0.0 0.00 4.55 F
3128 3276 0.036577 CTGCAGGAGAGACCCAACAG 60.037 60.0 5.57 0.0 40.05 3.16 F
4108 4262 0.108138 CTTGGCAACTACTCCCTCCG 60.108 60.0 0.00 0.0 37.61 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1077 1141 0.250727 TGTTCGGAAAGGAGCAAGGG 60.251 55.0 0.00 0.0 0.00 3.95 R
2038 2110 0.669318 CACGTAACTGCGGTGGTGAT 60.669 55.0 15.89 0.0 35.98 3.06 R
3008 3156 0.555769 TTCTTTGTCCAAGCCCACCT 59.444 50.0 0.00 0.0 31.70 4.00 R
4086 4240 0.693049 AGGGAGTAGTTGCCAAGTGG 59.307 55.0 0.00 0.0 40.38 4.00 R
4376 4530 0.035317 ACAGAAGCTCGGATTGCACA 59.965 50.0 0.00 0.0 0.00 4.57 R
5044 5222 0.600255 CCGTTCGGCCAGCTATAAGG 60.600 60.0 2.24 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.047877 CCCTGGCGACGGTTTGTC 61.048 66.667 0.00 0.00 44.53 3.18
56 57 1.740025 CCAAGGTCGAGCCATTCTTTC 59.260 52.381 11.73 0.00 40.61 2.62
57 58 2.616510 CCAAGGTCGAGCCATTCTTTCT 60.617 50.000 11.73 0.00 40.61 2.52
58 59 3.077359 CAAGGTCGAGCCATTCTTTCTT 58.923 45.455 11.73 0.00 40.61 2.52
59 60 3.425162 AGGTCGAGCCATTCTTTCTTT 57.575 42.857 11.73 0.00 40.61 2.52
60 61 3.339141 AGGTCGAGCCATTCTTTCTTTC 58.661 45.455 11.73 0.00 40.61 2.62
65 66 1.815003 AGCCATTCTTTCTTTCGCAGG 59.185 47.619 0.00 0.00 0.00 4.85
67 68 1.466360 CCATTCTTTCTTTCGCAGGCG 60.466 52.381 7.46 7.46 41.35 5.52
68 69 0.804989 ATTCTTTCTTTCGCAGGCGG 59.195 50.000 14.24 0.00 40.25 6.13
69 70 0.534203 TTCTTTCTTTCGCAGGCGGT 60.534 50.000 14.24 0.00 40.25 5.68
70 71 0.949105 TCTTTCTTTCGCAGGCGGTC 60.949 55.000 14.24 0.00 40.25 4.79
71 72 2.227968 CTTTCTTTCGCAGGCGGTCG 62.228 60.000 14.24 2.55 40.25 4.79
83 84 1.429148 GGCGGTCGCACTATTCCAAG 61.429 60.000 17.21 0.00 44.11 3.61
87 88 1.153449 TCGCACTATTCCAAGCCCG 60.153 57.895 0.00 0.00 0.00 6.13
91 92 1.808133 GCACTATTCCAAGCCCGAGAG 60.808 57.143 0.00 0.00 0.00 3.20
312 321 6.002082 GCTACACGGGGGAATAAGATTTATT 58.998 40.000 0.00 0.00 0.00 1.40
318 327 9.297037 CACGGGGGAATAAGATTTATTAAGATT 57.703 33.333 0.00 0.00 0.00 2.40
319 328 9.877222 ACGGGGGAATAAGATTTATTAAGATTT 57.123 29.630 0.00 0.00 0.00 2.17
451 465 4.742201 CGTCACGTGCCCCCAGAG 62.742 72.222 11.67 0.00 0.00 3.35
452 466 3.626924 GTCACGTGCCCCCAGAGT 61.627 66.667 11.67 0.00 0.00 3.24
453 467 3.311110 TCACGTGCCCCCAGAGTC 61.311 66.667 11.67 0.00 0.00 3.36
454 468 4.394712 CACGTGCCCCCAGAGTCC 62.395 72.222 0.82 0.00 0.00 3.85
457 471 3.721706 GTGCCCCCAGAGTCCCAG 61.722 72.222 0.00 0.00 0.00 4.45
458 472 3.940480 TGCCCCCAGAGTCCCAGA 61.940 66.667 0.00 0.00 0.00 3.86
540 555 1.068474 ATCGCTCAAACTTTCGTCCG 58.932 50.000 0.00 0.00 0.00 4.79
544 559 1.145803 CTCAAACTTTCGTCCGTCCC 58.854 55.000 0.00 0.00 0.00 4.46
546 561 1.139455 TCAAACTTTCGTCCGTCCCTT 59.861 47.619 0.00 0.00 0.00 3.95
609 634 1.662438 CGCTCTGACCTCTGACCCTC 61.662 65.000 0.00 0.00 0.00 4.30
610 635 1.326951 GCTCTGACCTCTGACCCTCC 61.327 65.000 0.00 0.00 0.00 4.30
741 766 2.983930 GCGCTCCTCGTCTGTGACT 61.984 63.158 0.00 0.00 41.07 3.41
747 772 1.202770 TCCTCGTCTGTGACTGAGACA 60.203 52.381 15.49 0.00 39.99 3.41
814 839 2.813172 GCACCCAACAAAAATGGAATGG 59.187 45.455 0.00 0.00 40.56 3.16
839 864 1.765074 GGGGCGGGGCTATTAATCA 59.235 57.895 0.00 0.00 0.00 2.57
960 1011 2.058595 GGGAGCTGTTCCTCGCCTA 61.059 63.158 10.49 0.00 45.98 3.93
962 1013 1.227118 GAGCTGTTCCTCGCCTAGC 60.227 63.158 0.00 0.00 34.71 3.42
964 1015 2.726351 GCTGTTCCTCGCCTAGCCT 61.726 63.158 0.00 0.00 0.00 4.58
965 1016 1.142748 CTGTTCCTCGCCTAGCCTG 59.857 63.158 0.00 0.00 0.00 4.85
966 1017 1.608717 CTGTTCCTCGCCTAGCCTGT 61.609 60.000 0.00 0.00 0.00 4.00
967 1018 1.142097 GTTCCTCGCCTAGCCTGTC 59.858 63.158 0.00 0.00 0.00 3.51
968 1019 2.058595 TTCCTCGCCTAGCCTGTCC 61.059 63.158 0.00 0.00 0.00 4.02
969 1020 2.759973 CCTCGCCTAGCCTGTCCA 60.760 66.667 0.00 0.00 0.00 4.02
970 1021 2.136878 CCTCGCCTAGCCTGTCCAT 61.137 63.158 0.00 0.00 0.00 3.41
971 1022 1.365633 CTCGCCTAGCCTGTCCATC 59.634 63.158 0.00 0.00 0.00 3.51
972 1023 2.028190 CGCCTAGCCTGTCCATCG 59.972 66.667 0.00 0.00 0.00 3.84
1077 1141 4.767255 CTGACAGGTGCCCGGCTC 62.767 72.222 11.61 6.98 0.00 4.70
1092 1156 1.746991 GCTCCCTTGCTCCTTTCCG 60.747 63.158 0.00 0.00 0.00 4.30
1097 1161 1.604604 CCTTGCTCCTTTCCGAACAA 58.395 50.000 0.00 0.00 0.00 2.83
1126 1190 2.838736 TGCCTTGTTCACTCTTCTCAC 58.161 47.619 0.00 0.00 0.00 3.51
1137 1201 6.048073 TCACTCTTCTCACAATTTGTTTCG 57.952 37.500 0.00 0.00 0.00 3.46
1140 1204 4.597079 TCTTCTCACAATTTGTTTCGTGC 58.403 39.130 0.00 0.00 0.00 5.34
1164 1231 4.566987 ACTACTGTTTCATCGAGGGTTTC 58.433 43.478 0.00 0.00 0.00 2.78
1165 1232 3.771577 ACTGTTTCATCGAGGGTTTCT 57.228 42.857 0.00 0.00 0.00 2.52
1170 1237 4.755123 TGTTTCATCGAGGGTTTCTTCTTC 59.245 41.667 0.00 0.00 0.00 2.87
1174 1241 2.051692 TCGAGGGTTTCTTCTTCCCAA 58.948 47.619 0.00 0.00 43.31 4.12
1177 1244 2.552743 GAGGGTTTCTTCTTCCCAAACG 59.447 50.000 0.00 0.00 43.31 3.60
1194 1261 1.045407 ACGCCTTTTCCCCCTTTTTC 58.955 50.000 0.00 0.00 0.00 2.29
1198 1265 2.563179 GCCTTTTCCCCCTTTTTCTCTC 59.437 50.000 0.00 0.00 0.00 3.20
1199 1266 3.165875 CCTTTTCCCCCTTTTTCTCTCC 58.834 50.000 0.00 0.00 0.00 3.71
1200 1267 3.181417 CCTTTTCCCCCTTTTTCTCTCCT 60.181 47.826 0.00 0.00 0.00 3.69
1202 1269 4.552883 TTTCCCCCTTTTTCTCTCCTTT 57.447 40.909 0.00 0.00 0.00 3.11
1204 1271 3.336676 TCCCCCTTTTTCTCTCCTTTCT 58.663 45.455 0.00 0.00 0.00 2.52
1205 1272 3.074538 TCCCCCTTTTTCTCTCCTTTCTG 59.925 47.826 0.00 0.00 0.00 3.02
1206 1273 3.181428 CCCCCTTTTTCTCTCCTTTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
1254 1321 1.547372 GCAGATTTTGTGGGCATCTGT 59.453 47.619 10.72 0.00 44.00 3.41
1269 1336 1.170442 TCTGTACCGATGCGAGACAA 58.830 50.000 0.00 0.00 0.00 3.18
1277 1344 2.932614 CCGATGCGAGACAAAAATCTCT 59.067 45.455 1.63 0.00 42.63 3.10
1404 1476 8.648557 TTTTTCAGTCATATCATACGAAGAGG 57.351 34.615 0.00 0.00 0.00 3.69
1405 1477 7.582667 TTTCAGTCATATCATACGAAGAGGA 57.417 36.000 0.00 0.00 0.00 3.71
1406 1478 7.767250 TTCAGTCATATCATACGAAGAGGAT 57.233 36.000 0.00 0.00 0.00 3.24
1407 1479 7.384439 TCAGTCATATCATACGAAGAGGATC 57.616 40.000 0.00 0.00 0.00 3.36
1875 1947 7.352079 TGTAACTATGGTAGGTAGCCTTTAC 57.648 40.000 0.00 0.00 34.61 2.01
1885 1957 3.946558 AGGTAGCCTTTACTCACTACTCG 59.053 47.826 0.00 0.00 36.19 4.18
1893 1965 5.295292 CCTTTACTCACTACTCGATACCGAA 59.705 44.000 0.00 0.00 45.04 4.30
1895 1967 6.932356 TTACTCACTACTCGATACCGAATT 57.068 37.500 0.00 0.00 45.04 2.17
1896 1968 8.437360 TTTACTCACTACTCGATACCGAATTA 57.563 34.615 0.00 0.00 45.04 1.40
1897 1969 6.297694 ACTCACTACTCGATACCGAATTAC 57.702 41.667 0.00 0.00 45.04 1.89
1898 1970 5.238214 ACTCACTACTCGATACCGAATTACC 59.762 44.000 0.00 0.00 45.04 2.85
1900 1972 4.212004 CACTACTCGATACCGAATTACCGA 59.788 45.833 0.00 0.00 45.04 4.69
1901 1973 4.999950 ACTACTCGATACCGAATTACCGAT 59.000 41.667 0.00 0.00 45.04 4.18
1903 1975 4.543692 ACTCGATACCGAATTACCGATTG 58.456 43.478 0.00 0.00 45.04 2.67
1904 1976 3.311106 TCGATACCGAATTACCGATTGC 58.689 45.455 0.00 0.00 42.51 3.56
1905 1977 3.005050 TCGATACCGAATTACCGATTGCT 59.995 43.478 0.00 0.00 42.51 3.91
1906 1978 4.216042 TCGATACCGAATTACCGATTGCTA 59.784 41.667 0.00 0.00 42.51 3.49
1919 1991 8.736751 TTACCGATTGCTAAAAGAATTTGTTC 57.263 30.769 0.00 0.00 39.02 3.18
1921 1993 7.378181 ACCGATTGCTAAAAGAATTTGTTCAT 58.622 30.769 0.00 0.00 39.02 2.57
1924 1996 8.702438 CGATTGCTAAAAGAATTTGTTCATGTT 58.298 29.630 0.00 0.00 39.02 2.71
1939 2011 3.577667 TCATGTTTTAAGCTGCATGCAC 58.422 40.909 18.46 13.93 45.94 4.57
1946 2018 1.874345 AAGCTGCATGCACCTGCTTC 61.874 55.000 29.71 10.31 41.62 3.86
1951 2023 2.362120 ATGCACCTGCTTCAGCCC 60.362 61.111 0.00 0.00 42.66 5.19
1956 2028 1.845205 ACCTGCTTCAGCCCAGAGT 60.845 57.895 0.00 0.00 41.18 3.24
1960 2032 1.552337 CTGCTTCAGCCCAGAGTTCTA 59.448 52.381 0.00 0.00 41.18 2.10
1961 2033 1.276421 TGCTTCAGCCCAGAGTTCTAC 59.724 52.381 0.00 0.00 41.18 2.59
1969 2041 2.166664 GCCCAGAGTTCTACACTTCGAT 59.833 50.000 0.00 0.00 35.01 3.59
1973 2045 4.641094 CCAGAGTTCTACACTTCGATACCT 59.359 45.833 0.00 0.00 35.01 3.08
1976 2048 4.342359 AGTTCTACACTTCGATACCTGGT 58.658 43.478 4.05 4.05 27.32 4.00
1985 2057 4.081087 ACTTCGATACCTGGTTAGCACAAT 60.081 41.667 3.84 0.00 0.00 2.71
1992 2064 9.647797 CGATACCTGGTTAGCACAATTATATAA 57.352 33.333 3.84 0.00 0.00 0.98
2021 2093 3.576550 GAGGCAAAACCATTAAGGGAACA 59.423 43.478 14.22 0.00 43.89 3.18
2038 2110 5.598830 AGGGAACAAGAATCTCGAGCTATTA 59.401 40.000 7.81 0.00 0.00 0.98
2055 2127 1.999048 TTATCACCACCGCAGTTACG 58.001 50.000 0.00 0.00 0.00 3.18
2114 2190 3.829026 GAGCCACTTCTTCCCATTTTTCT 59.171 43.478 0.00 0.00 0.00 2.52
2119 2195 5.244626 CCACTTCTTCCCATTTTTCTGTCAT 59.755 40.000 0.00 0.00 0.00 3.06
2121 2197 7.123247 CCACTTCTTCCCATTTTTCTGTCATAT 59.877 37.037 0.00 0.00 0.00 1.78
2122 2198 8.186821 CACTTCTTCCCATTTTTCTGTCATATC 58.813 37.037 0.00 0.00 0.00 1.63
2132 2208 9.297586 CATTTTTCTGTCATATCAAATGTGGAG 57.702 33.333 0.00 0.00 30.38 3.86
2133 2209 8.408043 TTTTTCTGTCATATCAAATGTGGAGT 57.592 30.769 0.00 0.00 0.00 3.85
2134 2210 6.990341 TTCTGTCATATCAAATGTGGAGTG 57.010 37.500 0.00 0.00 0.00 3.51
2135 2211 6.053632 TCTGTCATATCAAATGTGGAGTGT 57.946 37.500 0.00 0.00 0.00 3.55
2136 2212 5.876460 TCTGTCATATCAAATGTGGAGTGTG 59.124 40.000 0.00 0.00 0.00 3.82
2137 2213 4.395854 TGTCATATCAAATGTGGAGTGTGC 59.604 41.667 0.00 0.00 0.00 4.57
2138 2214 4.395854 GTCATATCAAATGTGGAGTGTGCA 59.604 41.667 0.00 0.00 0.00 4.57
2139 2215 5.066893 GTCATATCAAATGTGGAGTGTGCAT 59.933 40.000 0.00 0.00 0.00 3.96
2140 2216 5.653330 TCATATCAAATGTGGAGTGTGCATT 59.347 36.000 0.00 0.00 34.69 3.56
2141 2217 4.877378 ATCAAATGTGGAGTGTGCATTT 57.123 36.364 0.00 0.00 41.69 2.32
2142 2218 4.241590 TCAAATGTGGAGTGTGCATTTC 57.758 40.909 0.00 0.00 39.79 2.17
2143 2219 2.981805 CAAATGTGGAGTGTGCATTTCG 59.018 45.455 0.00 0.00 39.79 3.46
2144 2220 1.167851 ATGTGGAGTGTGCATTTCGG 58.832 50.000 0.00 0.00 0.00 4.30
2145 2221 0.107643 TGTGGAGTGTGCATTTCGGA 59.892 50.000 0.00 0.00 0.00 4.55
2162 2238 4.395959 TCGGATAGTTACATGGTTGTCC 57.604 45.455 0.00 0.00 37.28 4.02
2214 2290 9.047947 ACTCCCTCTGTAAAGAAATATAAGTGT 57.952 33.333 0.00 0.00 0.00 3.55
2228 2304 9.897349 GAAATATAAGTGTAGTGTTCTAAACGC 57.103 33.333 0.00 0.00 38.89 4.84
2249 2325 7.695869 ACGCTCTTATATTTCTTTACGAAGG 57.304 36.000 0.00 0.00 33.56 3.46
2250 2326 6.700520 ACGCTCTTATATTTCTTTACGAAGGG 59.299 38.462 0.00 0.00 33.56 3.95
2251 2327 6.921857 CGCTCTTATATTTCTTTACGAAGGGA 59.078 38.462 0.00 0.00 33.56 4.20
2252 2328 7.115095 CGCTCTTATATTTCTTTACGAAGGGAG 59.885 40.741 0.00 0.00 33.56 4.30
2253 2329 7.927092 GCTCTTATATTTCTTTACGAAGGGAGT 59.073 37.037 0.00 0.00 33.56 3.85
2284 2360 8.694581 TTATATCATGCAAAGATCAATGTGGA 57.305 30.769 8.14 0.00 0.00 4.02
2396 2475 5.348986 TCTTGATCCGTATTGTGCTACTTC 58.651 41.667 0.00 0.00 0.00 3.01
2407 2486 4.991153 TGTGCTACTTCTCATACAGAGG 57.009 45.455 0.00 0.00 44.81 3.69
2408 2487 4.600062 TGTGCTACTTCTCATACAGAGGA 58.400 43.478 0.00 0.00 44.81 3.71
2455 2534 2.622942 TGGAACTTGATGTGAACAAGGC 59.377 45.455 0.00 0.00 45.92 4.35
2622 2701 6.934645 GCAGATGGCTATATTGTAAGTTACCA 59.065 38.462 10.51 0.00 40.25 3.25
2629 2708 8.395633 GGCTATATTGTAAGTTACCACAACTTG 58.604 37.037 10.51 0.00 40.38 3.16
2668 2747 5.180868 AGAGTTCTGATTGAAGTTCATGCAC 59.819 40.000 6.36 0.00 38.36 4.57
2674 2753 4.579753 TGATTGAAGTTCATGCACAAGTCA 59.420 37.500 6.36 0.00 0.00 3.41
2782 2894 1.736126 CAGATTCGCTGCACATCACTT 59.264 47.619 0.00 0.00 37.90 3.16
2783 2895 2.005451 AGATTCGCTGCACATCACTTC 58.995 47.619 0.00 0.00 0.00 3.01
2792 2937 1.400242 GCACATCACTTCGCTTCAACC 60.400 52.381 0.00 0.00 0.00 3.77
2796 2941 3.003689 ACATCACTTCGCTTCAACCTTTG 59.996 43.478 0.00 0.00 0.00 2.77
2854 3002 6.657541 AGGGAATTTTATTGACTCTAAACGCA 59.342 34.615 0.00 0.00 0.00 5.24
2921 3069 6.147581 CCATGTATTATTCTGCTGTTGATGC 58.852 40.000 0.00 0.00 0.00 3.91
3008 3156 1.207488 AGCACCTGGGTGGCATCTTA 61.207 55.000 19.69 0.00 45.49 2.10
3032 3180 1.073923 GGGCTTGGACAAAGAAGGAGA 59.926 52.381 0.00 0.00 38.24 3.71
3128 3276 0.036577 CTGCAGGAGAGACCCAACAG 60.037 60.000 5.57 0.00 40.05 3.16
3129 3277 0.764369 TGCAGGAGAGACCCAACAGT 60.764 55.000 0.00 0.00 40.05 3.55
3152 3300 1.301716 GACTTGCTTCCTGGTGCGA 60.302 57.895 9.13 6.97 0.00 5.10
3284 3432 3.326747 ACGAGCAATAGGACAGTGAAAC 58.673 45.455 0.00 0.00 0.00 2.78
3286 3434 2.673368 GAGCAATAGGACAGTGAAACCG 59.327 50.000 0.00 0.00 37.80 4.44
3343 3491 1.298953 ATACCTGTGGAGCAACCCAT 58.701 50.000 0.00 0.00 38.66 4.00
3403 3551 0.944386 GGAGAACAACTCAAGCGCAA 59.056 50.000 11.47 0.00 46.54 4.85
3484 3632 1.758592 TGGGCTTACCACAGTCCAC 59.241 57.895 0.00 0.00 44.03 4.02
3485 3633 1.057275 TGGGCTTACCACAGTCCACA 61.057 55.000 0.00 0.00 44.03 4.17
3486 3634 0.321653 GGGCTTACCACAGTCCACAG 60.322 60.000 0.00 0.00 38.57 3.66
3489 3637 1.608283 GCTTACCACAGTCCACAGGTC 60.608 57.143 0.00 0.00 35.62 3.85
3490 3638 1.691976 CTTACCACAGTCCACAGGTCA 59.308 52.381 0.00 0.00 35.62 4.02
3491 3639 1.796017 TACCACAGTCCACAGGTCAA 58.204 50.000 0.00 0.00 35.62 3.18
3492 3640 0.180406 ACCACAGTCCACAGGTCAAC 59.820 55.000 0.00 0.00 0.00 3.18
3493 3641 0.180171 CCACAGTCCACAGGTCAACA 59.820 55.000 0.00 0.00 0.00 3.33
3494 3642 1.586422 CACAGTCCACAGGTCAACAG 58.414 55.000 0.00 0.00 0.00 3.16
3495 3643 1.134401 CACAGTCCACAGGTCAACAGT 60.134 52.381 0.00 0.00 0.00 3.55
3496 3644 1.134401 ACAGTCCACAGGTCAACAGTG 60.134 52.381 0.00 0.00 0.00 3.66
3497 3645 1.138859 CAGTCCACAGGTCAACAGTGA 59.861 52.381 0.00 0.00 35.33 3.41
3498 3646 2.050144 AGTCCACAGGTCAACAGTGAT 58.950 47.619 0.00 0.00 35.80 3.06
3499 3647 2.037772 AGTCCACAGGTCAACAGTGATC 59.962 50.000 0.00 0.00 35.80 2.92
3500 3648 2.037772 GTCCACAGGTCAACAGTGATCT 59.962 50.000 0.00 0.00 46.73 2.75
3501 3649 3.258372 GTCCACAGGTCAACAGTGATCTA 59.742 47.826 0.00 0.00 43.77 1.98
3512 3666 6.510799 GTCAACAGTGATCTAGCATATGTTGC 60.511 42.308 17.42 12.07 43.32 4.17
3613 3767 0.249031 GTCCTGCTTGTTGTGTTGCC 60.249 55.000 0.00 0.00 0.00 4.52
3661 3815 2.034558 AGTTGACTGCCCAAAATGTTCG 59.965 45.455 0.00 0.00 0.00 3.95
3733 3887 6.139671 AGTATTATCTCTTCAGGAGGCAGAA 58.860 40.000 0.00 0.00 42.10 3.02
3748 3902 3.118542 GGCAGAAACTTTTTGCACTCTG 58.881 45.455 16.49 0.81 39.54 3.35
3787 3941 2.608090 GTGTTTGCTACTTCGATAGGGC 59.392 50.000 0.00 0.00 0.00 5.19
3914 4068 5.308825 CATGTTAAGGCCAACTATAGGGAG 58.691 45.833 5.01 0.00 0.00 4.30
3917 4071 6.148186 TGTTAAGGCCAACTATAGGGAGTAT 58.852 40.000 5.01 0.00 0.00 2.12
4052 4206 4.332828 ACTACAAAGCATTGAACCCCTAC 58.667 43.478 8.96 0.00 38.94 3.18
4076 4230 8.885494 ACGGAGTAATAAGTGAGTACTACTAG 57.115 38.462 0.00 0.00 41.94 2.57
4099 4253 4.853468 TTATCCATCCACTTGGCAACTA 57.147 40.909 0.00 0.00 36.66 2.24
4100 4254 2.489938 TCCATCCACTTGGCAACTAC 57.510 50.000 0.00 0.00 36.66 2.73
4101 4255 1.985159 TCCATCCACTTGGCAACTACT 59.015 47.619 0.00 0.00 36.66 2.57
4102 4256 2.027192 TCCATCCACTTGGCAACTACTC 60.027 50.000 0.00 0.00 36.66 2.59
4103 4257 2.359900 CATCCACTTGGCAACTACTCC 58.640 52.381 0.00 0.00 34.44 3.85
4104 4258 0.690762 TCCACTTGGCAACTACTCCC 59.309 55.000 0.00 0.00 34.44 4.30
4105 4259 0.693049 CCACTTGGCAACTACTCCCT 59.307 55.000 0.00 0.00 37.61 4.20
4106 4260 1.339151 CCACTTGGCAACTACTCCCTC 60.339 57.143 0.00 0.00 37.61 4.30
4107 4261 0.984995 ACTTGGCAACTACTCCCTCC 59.015 55.000 0.00 0.00 37.61 4.30
4108 4262 0.108138 CTTGGCAACTACTCCCTCCG 60.108 60.000 0.00 0.00 37.61 4.63
4109 4263 0.834687 TTGGCAACTACTCCCTCCGT 60.835 55.000 0.00 0.00 37.61 4.69
4110 4264 0.834687 TGGCAACTACTCCCTCCGTT 60.835 55.000 0.00 0.00 37.61 4.44
4111 4265 0.108281 GGCAACTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
4112 4266 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
4113 4267 1.558233 CAACTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
4114 4268 2.731572 CAACTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
4115 4269 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
4116 4270 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4117 4271 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4118 4272 3.705072 ACTACTCCCTCCGTTCCTAAATG 59.295 47.826 0.00 0.00 0.00 2.32
4119 4273 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
4120 4274 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
4121 4275 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
4122 4276 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
4123 4277 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
4124 4278 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
4125 4279 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
4126 4280 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4127 4281 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4128 4282 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
4129 4283 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
4130 4284 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
4131 4285 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
4132 4286 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
4133 4287 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
4134 4288 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
4179 4333 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
4188 4342 6.839124 AGATGCATTTTAAGTGTGGATTCA 57.161 33.333 0.00 0.00 0.00 2.57
4189 4343 7.414222 AGATGCATTTTAAGTGTGGATTCAT 57.586 32.000 0.00 0.00 0.00 2.57
4190 4344 7.844009 AGATGCATTTTAAGTGTGGATTCATT 58.156 30.769 0.00 0.00 0.00 2.57
4191 4345 7.977853 AGATGCATTTTAAGTGTGGATTCATTC 59.022 33.333 0.00 0.00 0.00 2.67
4192 4346 6.990798 TGCATTTTAAGTGTGGATTCATTCA 58.009 32.000 0.00 0.00 0.00 2.57
4193 4347 7.613585 TGCATTTTAAGTGTGGATTCATTCAT 58.386 30.769 0.00 0.00 0.00 2.57
4194 4348 8.095792 TGCATTTTAAGTGTGGATTCATTCATT 58.904 29.630 0.00 0.00 0.00 2.57
4195 4349 8.938906 GCATTTTAAGTGTGGATTCATTCATTT 58.061 29.630 0.00 0.00 0.00 2.32
4198 4352 7.887996 TTAAGTGTGGATTCATTCATTTTGC 57.112 32.000 0.00 0.00 0.00 3.68
4199 4353 5.733620 AGTGTGGATTCATTCATTTTGCT 57.266 34.783 0.00 0.00 0.00 3.91
4200 4354 5.717119 AGTGTGGATTCATTCATTTTGCTC 58.283 37.500 0.00 0.00 0.00 4.26
4201 4355 4.866486 GTGTGGATTCATTCATTTTGCTCC 59.134 41.667 0.00 0.00 0.00 4.70
4202 4356 4.107622 GTGGATTCATTCATTTTGCTCCG 58.892 43.478 0.00 0.00 0.00 4.63
4203 4357 3.763360 TGGATTCATTCATTTTGCTCCGT 59.237 39.130 0.00 0.00 0.00 4.69
4204 4358 4.946772 TGGATTCATTCATTTTGCTCCGTA 59.053 37.500 0.00 0.00 0.00 4.02
4205 4359 5.593909 TGGATTCATTCATTTTGCTCCGTAT 59.406 36.000 0.00 0.00 0.00 3.06
4206 4360 5.916883 GGATTCATTCATTTTGCTCCGTATG 59.083 40.000 0.00 0.00 0.00 2.39
4207 4361 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
4208 4362 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
4209 4363 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4210 4364 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4211 4365 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4212 4366 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4213 4367 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4214 4368 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4215 4369 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
4216 4370 1.961394 TGCTCCGTATGTAGTCCATCC 59.039 52.381 0.00 0.00 34.86 3.51
4217 4371 1.961394 GCTCCGTATGTAGTCCATCCA 59.039 52.381 0.00 0.00 34.86 3.41
4218 4372 2.029828 GCTCCGTATGTAGTCCATCCAG 60.030 54.545 0.00 0.00 34.86 3.86
4219 4373 3.223435 CTCCGTATGTAGTCCATCCAGT 58.777 50.000 0.00 0.00 34.86 4.00
4220 4374 2.956333 TCCGTATGTAGTCCATCCAGTG 59.044 50.000 0.00 0.00 34.86 3.66
4235 4389 5.982356 CATCCAGTGGAATCTCTACAAAGA 58.018 41.667 17.71 0.00 34.34 2.52
4236 4390 5.407407 TCCAGTGGAATCTCTACAAAGAC 57.593 43.478 10.20 0.00 29.47 3.01
4237 4391 5.087323 TCCAGTGGAATCTCTACAAAGACT 58.913 41.667 10.20 0.00 29.47 3.24
4238 4392 5.544176 TCCAGTGGAATCTCTACAAAGACTT 59.456 40.000 10.20 0.00 29.47 3.01
4239 4393 6.724441 TCCAGTGGAATCTCTACAAAGACTTA 59.276 38.462 10.20 0.00 29.47 2.24
4240 4394 6.814146 CCAGTGGAATCTCTACAAAGACTTAC 59.186 42.308 1.68 0.00 29.47 2.34
4241 4395 7.378966 CAGTGGAATCTCTACAAAGACTTACA 58.621 38.462 0.00 0.00 29.47 2.41
4242 4396 8.037758 CAGTGGAATCTCTACAAAGACTTACAT 58.962 37.037 0.00 0.00 29.47 2.29
4243 4397 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
4244 4398 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
4252 4406 9.667107 TCTACAAAGACTTACATTTAGGAATGG 57.333 33.333 4.39 0.00 45.56 3.16
4253 4407 9.667107 CTACAAAGACTTACATTTAGGAATGGA 57.333 33.333 4.39 0.00 45.56 3.41
4254 4408 8.567285 ACAAAGACTTACATTTAGGAATGGAG 57.433 34.615 4.39 4.38 45.56 3.86
4255 4409 7.611855 ACAAAGACTTACATTTAGGAATGGAGG 59.388 37.037 4.39 0.00 45.56 4.30
4256 4410 6.253946 AGACTTACATTTAGGAATGGAGGG 57.746 41.667 4.39 0.00 45.56 4.30
4257 4411 5.970640 AGACTTACATTTAGGAATGGAGGGA 59.029 40.000 4.39 0.00 45.56 4.20
4258 4412 6.100424 AGACTTACATTTAGGAATGGAGGGAG 59.900 42.308 4.39 0.00 45.56 4.30
4259 4413 5.731678 ACTTACATTTAGGAATGGAGGGAGT 59.268 40.000 4.39 0.00 45.56 3.85
4267 4421 7.758820 TTAGGAATGGAGGGAGTAAAATGTA 57.241 36.000 0.00 0.00 0.00 2.29
4287 4441 8.594881 AATGTATAGCATGTACTAAGCTGTTC 57.405 34.615 14.64 8.52 39.30 3.18
4359 4513 1.074405 ACAATGACCTGCTCATGGTGT 59.926 47.619 0.00 0.00 41.46 4.16
4409 4563 1.699634 CTTCTGTTCAGGAAGGACCCA 59.300 52.381 0.00 0.00 40.05 4.51
4412 4566 1.630369 CTGTTCAGGAAGGACCCATCA 59.370 52.381 0.00 0.00 40.05 3.07
4442 4596 1.074951 CGAGAAGGGCTGGGGTTTT 59.925 57.895 0.00 0.00 0.00 2.43
4466 4620 4.319766 CCAAGACGCATATACTTCAATGGC 60.320 45.833 0.00 0.00 0.00 4.40
4467 4621 3.403038 AGACGCATATACTTCAATGGCC 58.597 45.455 0.00 0.00 0.00 5.36
4523 4677 3.333219 CTGCCAAGCTCCTCCCCA 61.333 66.667 0.00 0.00 0.00 4.96
4668 4822 1.326245 TGACGTCTTGAGTTTGTTGCG 59.674 47.619 17.92 0.00 0.00 4.85
4706 4862 2.798976 TGTTGCATCAAAAGCTGACC 57.201 45.000 0.00 0.00 36.69 4.02
4707 4863 1.001487 TGTTGCATCAAAAGCTGACCG 60.001 47.619 0.00 0.00 36.69 4.79
4749 4905 2.677524 GGGCATTGAGCACTGGCA 60.678 61.111 14.50 0.00 45.63 4.92
4791 4950 5.514274 TTAAATCCATTCAGATTTCGGGC 57.486 39.130 2.95 0.00 43.66 6.13
4806 4965 1.877443 TCGGGCTCTTGCAAGTTTAAC 59.123 47.619 25.19 12.32 41.91 2.01
4815 4974 6.020360 GCTCTTGCAAGTTTAACTTTGTTCAG 60.020 38.462 25.19 11.31 36.03 3.02
4856 5020 9.725019 TTCTCAGATTTAAGTTTGAATCTAGCA 57.275 29.630 10.41 0.65 40.29 3.49
4869 5033 2.226962 TCTAGCAAACTACCGTCCCT 57.773 50.000 0.00 0.00 0.00 4.20
4871 5035 0.899720 TAGCAAACTACCGTCCCTGG 59.100 55.000 0.00 0.00 0.00 4.45
4877 5041 3.680196 TACCGTCCCTGGCCTCCT 61.680 66.667 3.32 0.00 0.00 3.69
4886 5050 2.041265 TGGCCTCCTCTCCCCTTC 59.959 66.667 3.32 0.00 0.00 3.46
4910 5074 4.250305 CCGGCGGGGTTCCCTATG 62.250 72.222 20.56 0.08 42.67 2.23
4911 5075 3.158648 CGGCGGGGTTCCCTATGA 61.159 66.667 7.87 0.00 42.67 2.15
4912 5076 2.829592 GGCGGGGTTCCCTATGAG 59.170 66.667 7.87 0.00 42.67 2.90
4913 5077 1.764854 GGCGGGGTTCCCTATGAGA 60.765 63.158 7.87 0.00 42.67 3.27
4914 5078 1.446366 GCGGGGTTCCCTATGAGAC 59.554 63.158 7.87 0.00 42.67 3.36
4915 5079 1.740285 CGGGGTTCCCTATGAGACG 59.260 63.158 7.87 0.00 42.67 4.18
4916 5080 1.446366 GGGGTTCCCTATGAGACGC 59.554 63.158 7.87 0.00 41.34 5.19
4917 5081 1.335132 GGGGTTCCCTATGAGACGCA 61.335 60.000 7.87 0.00 41.34 5.24
4918 5082 0.105039 GGGTTCCCTATGAGACGCAG 59.895 60.000 0.00 0.00 0.00 5.18
4919 5083 0.105039 GGTTCCCTATGAGACGCAGG 59.895 60.000 0.00 0.00 0.00 4.85
4920 5084 0.530870 GTTCCCTATGAGACGCAGGC 60.531 60.000 0.00 0.00 0.00 4.85
4921 5085 2.016393 TTCCCTATGAGACGCAGGCG 62.016 60.000 12.71 12.71 46.03 5.52
4922 5086 2.490148 CCCTATGAGACGCAGGCGA 61.490 63.158 21.62 0.00 42.83 5.54
4988 5152 1.301293 GGAGAAGGGAAGCTGTGGG 59.699 63.158 0.00 0.00 0.00 4.61
5011 5175 4.243008 TGTTGCTCGGCCGACCAA 62.243 61.111 27.80 27.80 34.57 3.67
5012 5176 3.423154 GTTGCTCGGCCGACCAAG 61.423 66.667 31.08 20.26 34.57 3.61
5039 5209 3.878667 GGCGCCTGGCTCCCTAAT 61.879 66.667 22.15 0.00 42.94 1.73
5041 5211 2.427753 CGCCTGGCTCCCTAATCC 59.572 66.667 17.92 0.00 0.00 3.01
5044 5222 2.427753 CTGGCTCCCTAATCCGGC 59.572 66.667 0.00 0.00 0.00 6.13
5064 5242 0.387929 CTTATAGCTGGCCGAACGGA 59.612 55.000 17.63 0.00 37.50 4.69
5097 5275 2.435234 GGCCCATGAACACGCGTA 60.435 61.111 13.44 0.00 0.00 4.42
5101 5279 0.389296 CCCATGAACACGCGTACTCA 60.389 55.000 20.68 20.68 0.00 3.41
5105 5283 0.038618 TGAACACGCGTACTCAGCAT 60.039 50.000 13.44 0.00 34.19 3.79
5364 5629 2.892215 TGGAGTTCATGAGCATGCAAAA 59.108 40.909 21.98 4.81 38.65 2.44
5413 5678 5.168526 TCACCAACTCGAAAAAGTTCATG 57.831 39.130 0.00 0.00 37.38 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.047877 GACAAACCGTCGCCAGGG 61.048 66.667 0.00 0.00 34.19 4.45
22 23 4.680237 TTGGTCAGCCTGGCGACG 62.680 66.667 25.78 15.40 34.70 5.12
23 24 2.743928 CTTGGTCAGCCTGGCGAC 60.744 66.667 25.27 25.27 35.27 5.19
24 25 4.020617 CCTTGGTCAGCCTGGCGA 62.021 66.667 13.96 10.96 35.27 5.54
25 26 4.335647 ACCTTGGTCAGCCTGGCG 62.336 66.667 13.96 8.60 34.21 5.69
26 27 2.360475 GACCTTGGTCAGCCTGGC 60.360 66.667 11.65 11.65 34.21 4.85
27 28 2.046892 CGACCTTGGTCAGCCTGG 60.047 66.667 18.51 0.00 35.98 4.45
28 29 1.079543 CTCGACCTTGGTCAGCCTG 60.080 63.158 18.51 3.43 35.27 4.85
32 33 0.036010 AATGGCTCGACCTTGGTCAG 60.036 55.000 18.51 14.79 40.22 3.51
60 61 4.873129 ATAGTGCGACCGCCTGCG 62.873 66.667 12.08 4.20 41.09 5.18
65 66 2.006772 CTTGGAATAGTGCGACCGC 58.993 57.895 7.53 7.53 42.35 5.68
67 68 1.095807 GGGCTTGGAATAGTGCGACC 61.096 60.000 0.00 0.00 0.00 4.79
68 69 1.429148 CGGGCTTGGAATAGTGCGAC 61.429 60.000 0.00 0.00 0.00 5.19
69 70 1.153449 CGGGCTTGGAATAGTGCGA 60.153 57.895 0.00 0.00 0.00 5.10
70 71 1.153449 TCGGGCTTGGAATAGTGCG 60.153 57.895 0.00 0.00 0.00 5.34
71 72 0.178068 TCTCGGGCTTGGAATAGTGC 59.822 55.000 0.00 0.00 0.00 4.40
72 73 1.808133 GCTCTCGGGCTTGGAATAGTG 60.808 57.143 0.00 0.00 0.00 2.74
73 74 0.466124 GCTCTCGGGCTTGGAATAGT 59.534 55.000 0.00 0.00 0.00 2.12
74 75 0.598680 CGCTCTCGGGCTTGGAATAG 60.599 60.000 0.00 0.00 0.00 1.73
277 286 4.454554 GTGTAGCTCGACACGGAC 57.545 61.111 4.07 0.00 40.33 4.79
318 327 9.542462 CATGTCGTTAATCCTTCTTAATCCTAA 57.458 33.333 0.00 0.00 0.00 2.69
319 328 7.656137 GCATGTCGTTAATCCTTCTTAATCCTA 59.344 37.037 0.00 0.00 0.00 2.94
407 420 5.483685 AAAAGAAAGAAAAGGGGCATACC 57.516 39.130 0.00 0.00 39.11 2.73
412 425 3.496160 GGGGAAAAAGAAAGAAAAGGGGC 60.496 47.826 0.00 0.00 0.00 5.80
451 465 1.779061 TTTGGCTCTGGGTCTGGGAC 61.779 60.000 0.00 0.00 0.00 4.46
452 466 1.463214 TTTGGCTCTGGGTCTGGGA 60.463 57.895 0.00 0.00 0.00 4.37
453 467 1.001641 CTTTGGCTCTGGGTCTGGG 60.002 63.158 0.00 0.00 0.00 4.45
454 468 1.676967 GCTTTGGCTCTGGGTCTGG 60.677 63.158 0.00 0.00 35.22 3.86
455 469 0.538057 TTGCTTTGGCTCTGGGTCTG 60.538 55.000 0.00 0.00 39.59 3.51
456 470 0.185901 TTTGCTTTGGCTCTGGGTCT 59.814 50.000 0.00 0.00 39.59 3.85
457 471 0.315251 GTTTGCTTTGGCTCTGGGTC 59.685 55.000 0.00 0.00 39.59 4.46
458 472 0.396974 TGTTTGCTTTGGCTCTGGGT 60.397 50.000 0.00 0.00 39.59 4.51
589 614 2.716017 GGGTCAGAGGTCAGAGCGG 61.716 68.421 0.00 0.00 31.78 5.52
609 634 3.591835 GCGGCGAGAGAGAGAGGG 61.592 72.222 12.98 0.00 0.00 4.30
610 635 3.947841 CGCGGCGAGAGAGAGAGG 61.948 72.222 19.16 0.00 0.00 3.69
728 753 1.068885 GTGTCTCAGTCACAGACGAGG 60.069 57.143 14.31 1.61 42.91 4.63
732 757 0.312416 AGCGTGTCTCAGTCACAGAC 59.688 55.000 2.88 0.00 40.75 3.51
735 760 1.282875 CGAGCGTGTCTCAGTCACA 59.717 57.895 2.88 0.00 41.98 3.58
737 762 2.255554 GCGAGCGTGTCTCAGTCA 59.744 61.111 0.00 0.00 41.98 3.41
741 766 3.749064 GAGGGCGAGCGTGTCTCA 61.749 66.667 0.00 0.00 41.98 3.27
776 801 2.124942 CGGGGAGAAAGAGGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
777 802 2.124942 GCGGGGAGAAAGAGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
778 803 2.927856 TGCGGGGAGAAAGAGGCA 60.928 61.111 0.00 0.00 0.00 4.75
962 1013 4.838152 CCACGGCCGATGGACAGG 62.838 72.222 35.90 16.68 39.87 4.00
1077 1141 0.250727 TGTTCGGAAAGGAGCAAGGG 60.251 55.000 0.00 0.00 0.00 3.95
1078 1142 1.266989 GTTGTTCGGAAAGGAGCAAGG 59.733 52.381 0.00 0.00 37.73 3.61
1083 1147 4.252971 TGTAGAGTTGTTCGGAAAGGAG 57.747 45.455 0.00 0.00 0.00 3.69
1084 1148 4.884668 ATGTAGAGTTGTTCGGAAAGGA 57.115 40.909 0.00 0.00 0.00 3.36
1092 1156 5.438761 AACAAGGCAATGTAGAGTTGTTC 57.561 39.130 0.00 0.00 33.91 3.18
1097 1161 4.040952 AGAGTGAACAAGGCAATGTAGAGT 59.959 41.667 0.00 0.00 32.02 3.24
1126 1190 5.985781 ACAGTAGTAGCACGAAACAAATTG 58.014 37.500 0.00 0.00 0.00 2.32
1137 1201 4.106197 CCTCGATGAAACAGTAGTAGCAC 58.894 47.826 0.00 0.00 0.00 4.40
1140 1204 4.985538 ACCCTCGATGAAACAGTAGTAG 57.014 45.455 0.00 0.00 0.00 2.57
1164 1231 2.288213 GGAAAAGGCGTTTGGGAAGAAG 60.288 50.000 4.95 0.00 0.00 2.85
1165 1232 1.684450 GGAAAAGGCGTTTGGGAAGAA 59.316 47.619 4.95 0.00 0.00 2.52
1170 1237 2.579657 GGGGGAAAAGGCGTTTGGG 61.580 63.158 4.95 0.00 0.00 4.12
1174 1241 1.414919 GAAAAAGGGGGAAAAGGCGTT 59.585 47.619 0.00 0.00 0.00 4.84
1177 1244 2.563179 GAGAGAAAAAGGGGGAAAAGGC 59.437 50.000 0.00 0.00 0.00 4.35
1194 1261 4.160626 AGGACGGATTTACAGAAAGGAGAG 59.839 45.833 0.00 0.00 0.00 3.20
1198 1265 3.119245 TCGAGGACGGATTTACAGAAAGG 60.119 47.826 0.00 0.00 40.21 3.11
1199 1266 4.106029 TCGAGGACGGATTTACAGAAAG 57.894 45.455 0.00 0.00 40.21 2.62
1200 1267 4.401519 AGATCGAGGACGGATTTACAGAAA 59.598 41.667 0.00 0.00 40.21 2.52
1202 1269 3.552875 AGATCGAGGACGGATTTACAGA 58.447 45.455 0.00 0.00 40.21 3.41
1204 1271 3.697542 TCAAGATCGAGGACGGATTTACA 59.302 43.478 0.00 0.00 40.21 2.41
1205 1272 4.303086 TCAAGATCGAGGACGGATTTAC 57.697 45.455 0.00 0.00 40.21 2.01
1206 1273 6.264744 ACTTATCAAGATCGAGGACGGATTTA 59.735 38.462 0.00 0.00 40.21 1.40
1254 1321 3.857052 AGATTTTTGTCTCGCATCGGTA 58.143 40.909 0.00 0.00 0.00 4.02
1304 1371 5.004361 TCTGGTTCCCCACATGATTTTTA 57.996 39.130 0.00 0.00 35.17 1.52
1404 1476 2.515854 TCTACTAGGGCCACATCGATC 58.484 52.381 6.18 0.00 0.00 3.69
1405 1477 2.677542 TCTACTAGGGCCACATCGAT 57.322 50.000 6.18 0.00 0.00 3.59
1406 1478 2.447408 TTCTACTAGGGCCACATCGA 57.553 50.000 6.18 0.00 0.00 3.59
1407 1479 2.894126 AGATTCTACTAGGGCCACATCG 59.106 50.000 6.18 0.00 0.00 3.84
1848 1920 3.006644 GGCTACCTACCATAGTTACAGGC 59.993 52.174 0.00 0.00 0.00 4.85
1857 1929 5.774179 AGTGAGTAAAGGCTACCTACCATA 58.226 41.667 0.00 0.00 31.13 2.74
1859 1931 4.057063 AGTGAGTAAAGGCTACCTACCA 57.943 45.455 0.00 0.00 31.13 3.25
1875 1947 5.614231 CGGTAATTCGGTATCGAGTAGTGAG 60.614 48.000 0.00 0.00 46.75 3.51
1885 1957 6.774354 TTTAGCAATCGGTAATTCGGTATC 57.226 37.500 0.00 0.00 35.15 2.24
1893 1965 9.353999 GAACAAATTCTTTTAGCAATCGGTAAT 57.646 29.630 0.00 0.00 32.24 1.89
1895 1967 7.877003 TGAACAAATTCTTTTAGCAATCGGTA 58.123 30.769 0.00 0.00 35.69 4.02
1896 1968 6.744112 TGAACAAATTCTTTTAGCAATCGGT 58.256 32.000 0.00 0.00 35.69 4.69
1897 1969 7.329226 ACATGAACAAATTCTTTTAGCAATCGG 59.671 33.333 0.00 0.00 35.69 4.18
1898 1970 8.231304 ACATGAACAAATTCTTTTAGCAATCG 57.769 30.769 0.00 0.00 35.69 3.34
1919 1991 2.669434 GGTGCATGCAGCTTAAAACATG 59.331 45.455 36.09 0.00 45.94 3.21
1921 1993 2.437200 GGTGCATGCAGCTTAAAACA 57.563 45.000 36.09 2.59 45.94 2.83
1939 2011 0.676151 GAACTCTGGGCTGAAGCAGG 60.676 60.000 4.43 0.00 44.36 4.85
1946 2018 2.672478 CGAAGTGTAGAACTCTGGGCTG 60.672 54.545 0.00 0.00 38.56 4.85
1951 2023 5.449314 CCAGGTATCGAAGTGTAGAACTCTG 60.449 48.000 0.00 0.00 38.56 3.35
1956 2028 5.163581 GCTAACCAGGTATCGAAGTGTAGAA 60.164 44.000 0.00 0.00 0.00 2.10
1960 2032 2.829720 TGCTAACCAGGTATCGAAGTGT 59.170 45.455 0.00 0.00 0.00 3.55
1961 2033 3.187700 GTGCTAACCAGGTATCGAAGTG 58.812 50.000 0.00 0.00 0.00 3.16
1992 2064 8.065007 TCCCTTAATGGTTTTGCCTCTTATATT 58.935 33.333 0.00 0.00 38.35 1.28
1994 2066 6.975949 TCCCTTAATGGTTTTGCCTCTTATA 58.024 36.000 0.00 0.00 38.35 0.98
2003 2075 7.670364 AGATTCTTGTTCCCTTAATGGTTTTG 58.330 34.615 0.00 0.00 0.00 2.44
2008 2080 5.428253 TCGAGATTCTTGTTCCCTTAATGG 58.572 41.667 0.82 0.00 0.00 3.16
2013 2085 2.569404 AGCTCGAGATTCTTGTTCCCTT 59.431 45.455 18.75 0.00 0.00 3.95
2021 2093 6.451393 GTGGTGATAATAGCTCGAGATTCTT 58.549 40.000 18.75 9.91 0.00 2.52
2038 2110 0.669318 CACGTAACTGCGGTGGTGAT 60.669 55.000 15.89 0.00 35.98 3.06
2088 2160 4.657814 AATGGGAAGAAGTGGCTCTTAA 57.342 40.909 1.16 0.00 35.76 1.85
2091 2167 3.532641 AAAATGGGAAGAAGTGGCTCT 57.467 42.857 0.00 0.00 0.00 4.09
2096 2172 5.772825 TGACAGAAAAATGGGAAGAAGTG 57.227 39.130 0.00 0.00 0.00 3.16
2114 2190 4.395854 GCACACTCCACATTTGATATGACA 59.604 41.667 0.00 0.00 0.00 3.58
2119 2195 5.391843 CGAAATGCACACTCCACATTTGATA 60.392 40.000 5.03 0.00 42.45 2.15
2121 2197 3.304592 CGAAATGCACACTCCACATTTGA 60.305 43.478 5.03 0.00 42.45 2.69
2122 2198 2.981805 CGAAATGCACACTCCACATTTG 59.018 45.455 5.03 0.00 42.45 2.32
2132 2208 5.501715 CATGTAACTATCCGAAATGCACAC 58.498 41.667 0.00 0.00 0.00 3.82
2133 2209 4.574421 CCATGTAACTATCCGAAATGCACA 59.426 41.667 0.00 0.00 0.00 4.57
2134 2210 4.574828 ACCATGTAACTATCCGAAATGCAC 59.425 41.667 0.00 0.00 0.00 4.57
2135 2211 4.776349 ACCATGTAACTATCCGAAATGCA 58.224 39.130 0.00 0.00 0.00 3.96
2136 2212 5.065988 ACAACCATGTAACTATCCGAAATGC 59.934 40.000 0.00 0.00 38.24 3.56
2137 2213 6.238374 GGACAACCATGTAACTATCCGAAATG 60.238 42.308 0.00 0.00 40.74 2.32
2138 2214 5.820947 GGACAACCATGTAACTATCCGAAAT 59.179 40.000 0.00 0.00 40.74 2.17
2139 2215 5.180271 GGACAACCATGTAACTATCCGAAA 58.820 41.667 0.00 0.00 40.74 3.46
2140 2216 4.223255 TGGACAACCATGTAACTATCCGAA 59.777 41.667 0.00 0.00 40.74 4.30
2141 2217 3.770388 TGGACAACCATGTAACTATCCGA 59.230 43.478 0.00 0.00 40.74 4.55
2142 2218 4.131649 TGGACAACCATGTAACTATCCG 57.868 45.455 0.00 0.00 40.74 4.18
2143 2219 7.404671 AATTTGGACAACCATGTAACTATCC 57.595 36.000 0.00 0.00 46.34 2.59
2188 2264 9.047947 ACACTTATATTTCTTTACAGAGGGAGT 57.952 33.333 0.00 0.00 0.00 3.85
2202 2278 9.897349 GCGTTTAGAACACTACACTTATATTTC 57.103 33.333 0.00 0.00 0.00 2.17
2203 2279 9.649167 AGCGTTTAGAACACTACACTTATATTT 57.351 29.630 0.00 0.00 0.00 1.40
2204 2280 9.298774 GAGCGTTTAGAACACTACACTTATATT 57.701 33.333 0.00 0.00 0.00 1.28
2205 2281 8.684520 AGAGCGTTTAGAACACTACACTTATAT 58.315 33.333 0.00 0.00 0.00 0.86
2206 2282 8.048534 AGAGCGTTTAGAACACTACACTTATA 57.951 34.615 0.00 0.00 0.00 0.98
2207 2283 6.921914 AGAGCGTTTAGAACACTACACTTAT 58.078 36.000 0.00 0.00 0.00 1.73
2208 2284 6.323203 AGAGCGTTTAGAACACTACACTTA 57.677 37.500 0.00 0.00 0.00 2.24
2209 2285 5.197682 AGAGCGTTTAGAACACTACACTT 57.802 39.130 0.00 0.00 0.00 3.16
2210 2286 4.850347 AGAGCGTTTAGAACACTACACT 57.150 40.909 0.00 0.00 0.00 3.55
2211 2287 8.853469 ATATAAGAGCGTTTAGAACACTACAC 57.147 34.615 0.00 0.00 0.00 2.90
2212 2288 9.865321 AAATATAAGAGCGTTTAGAACACTACA 57.135 29.630 0.00 0.00 0.00 2.74
2215 2291 9.654663 AAGAAATATAAGAGCGTTTAGAACACT 57.345 29.630 0.00 0.00 0.00 3.55
2223 2299 8.601476 CCTTCGTAAAGAAATATAAGAGCGTTT 58.399 33.333 0.00 0.00 38.57 3.60
2224 2300 7.224167 CCCTTCGTAAAGAAATATAAGAGCGTT 59.776 37.037 0.00 0.00 38.57 4.84
2225 2301 6.700520 CCCTTCGTAAAGAAATATAAGAGCGT 59.299 38.462 0.00 0.00 38.57 5.07
2226 2302 6.921857 TCCCTTCGTAAAGAAATATAAGAGCG 59.078 38.462 0.00 0.00 38.57 5.03
2227 2303 7.927092 ACTCCCTTCGTAAAGAAATATAAGAGC 59.073 37.037 0.00 0.00 38.57 4.09
2233 2309 9.955102 AAAACTACTCCCTTCGTAAAGAAATAT 57.045 29.630 0.00 0.00 38.57 1.28
2234 2310 9.783081 AAAAACTACTCCCTTCGTAAAGAAATA 57.217 29.630 0.00 0.00 38.57 1.40
2235 2311 8.687292 AAAAACTACTCCCTTCGTAAAGAAAT 57.313 30.769 0.00 0.00 38.57 2.17
2236 2312 9.783081 ATAAAAACTACTCCCTTCGTAAAGAAA 57.217 29.630 0.00 0.00 38.57 2.52
2242 2318 9.976511 CATGATATAAAAACTACTCCCTTCGTA 57.023 33.333 0.00 0.00 0.00 3.43
2243 2319 7.441458 GCATGATATAAAAACTACTCCCTTCGT 59.559 37.037 0.00 0.00 0.00 3.85
2244 2320 7.441157 TGCATGATATAAAAACTACTCCCTTCG 59.559 37.037 0.00 0.00 0.00 3.79
2245 2321 8.677148 TGCATGATATAAAAACTACTCCCTTC 57.323 34.615 0.00 0.00 0.00 3.46
2246 2322 9.474313 TTTGCATGATATAAAAACTACTCCCTT 57.526 29.630 0.00 0.00 0.00 3.95
2247 2323 9.125026 CTTTGCATGATATAAAAACTACTCCCT 57.875 33.333 0.00 0.00 0.00 4.20
2248 2324 9.120538 TCTTTGCATGATATAAAAACTACTCCC 57.879 33.333 0.00 0.00 0.00 4.30
2284 2360 7.726291 ACTCTGTAACTATCCTATATGCACACT 59.274 37.037 0.00 0.00 0.00 3.55
2396 2475 3.308323 GCGAAAAAGCTCCTCTGTATGAG 59.692 47.826 0.00 0.00 42.30 2.90
2455 2534 4.681025 GGTTACATGCATTTCAACACACAG 59.319 41.667 13.80 0.00 0.00 3.66
2622 2701 9.998106 ACTCTGAATTACTGTATTACAAGTTGT 57.002 29.630 14.05 14.05 0.00 3.32
2668 2747 2.329379 GAGTACTTGCGTCCTGACTTG 58.671 52.381 0.00 0.00 0.00 3.16
2674 2753 1.349067 AAAGGGAGTACTTGCGTCCT 58.651 50.000 0.00 0.00 0.00 3.85
2744 2856 4.979943 TCTGTTCTGCATTGTGTCAAAA 57.020 36.364 0.00 0.00 0.00 2.44
2782 2894 6.932400 TCTTAATAAGACAAAGGTTGAAGCGA 59.068 34.615 0.00 0.00 31.20 4.93
2783 2895 7.129109 TCTTAATAAGACAAAGGTTGAAGCG 57.871 36.000 0.00 0.00 31.20 4.68
2854 3002 8.686334 CACAATTATGTAAGGGTTCTTAATGCT 58.314 33.333 0.00 0.00 37.82 3.79
2921 3069 5.163784 CCTGTGAAATGCAGATTGTACAGAG 60.164 44.000 19.77 9.57 37.94 3.35
3008 3156 0.555769 TTCTTTGTCCAAGCCCACCT 59.444 50.000 0.00 0.00 31.70 4.00
3032 3180 2.109480 CACCCATCATTCCCCAGATGAT 59.891 50.000 4.12 0.00 43.28 2.45
3083 3231 7.435192 GCAGTGTGGTATATTGCCTTTAAATTC 59.565 37.037 0.00 0.00 0.00 2.17
3128 3276 2.808543 CACCAGGAAGCAAGTCAACTAC 59.191 50.000 0.00 0.00 0.00 2.73
3129 3277 2.810400 GCACCAGGAAGCAAGTCAACTA 60.810 50.000 0.00 0.00 0.00 2.24
3152 3300 1.377202 CCACCTGCATGCCGTTAGT 60.377 57.895 16.68 2.17 0.00 2.24
3284 3432 1.170290 AGGGTGAAGTTTTTCGGCGG 61.170 55.000 7.21 0.00 36.04 6.13
3286 3434 1.314730 TGAGGGTGAAGTTTTTCGGC 58.685 50.000 0.00 0.00 36.04 5.54
3338 3486 4.355889 AGTGGGAGGTTTTACTTTATGGGT 59.644 41.667 0.00 0.00 0.00 4.51
3343 3491 7.804147 TGAACTTAGTGGGAGGTTTTACTTTA 58.196 34.615 0.00 0.00 0.00 1.85
3480 3628 2.329267 AGATCACTGTTGACCTGTGGA 58.671 47.619 0.00 0.00 41.79 4.02
3481 3629 2.847327 AGATCACTGTTGACCTGTGG 57.153 50.000 0.00 0.00 41.79 4.17
3484 3632 3.599730 TGCTAGATCACTGTTGACCTG 57.400 47.619 0.00 0.00 33.38 4.00
3485 3633 5.365025 ACATATGCTAGATCACTGTTGACCT 59.635 40.000 1.58 0.00 33.38 3.85
3486 3634 5.605534 ACATATGCTAGATCACTGTTGACC 58.394 41.667 1.58 0.00 33.38 4.02
3512 3666 4.386049 AGAACATTTTCGTTAGTCAGCGAG 59.614 41.667 0.00 0.00 38.67 5.03
3515 3669 5.847670 AGAGAACATTTTCGTTAGTCAGC 57.152 39.130 0.00 0.00 36.78 4.26
3661 3815 2.810439 TGTTATTTTGGCAGCCACAC 57.190 45.000 15.89 6.78 30.78 3.82
3733 3887 5.391312 AGTTTCACAGAGTGCAAAAAGTT 57.609 34.783 0.00 0.00 32.98 2.66
3748 3902 9.463443 AGCAAACACATTTAGAAATAGTTTCAC 57.537 29.630 11.66 8.93 42.10 3.18
3908 4062 3.273886 TCTTCACCCTCCAATACTCCCTA 59.726 47.826 0.00 0.00 0.00 3.53
4052 4206 8.885494 ACTAGTAGTACTCACTTATTACTCCG 57.115 38.462 5.96 0.00 36.14 4.63
4076 4230 3.763897 AGTTGCCAAGTGGATGGATAAAC 59.236 43.478 0.18 0.00 43.54 2.01
4086 4240 0.693049 AGGGAGTAGTTGCCAAGTGG 59.307 55.000 0.00 0.00 40.38 4.00
4099 4253 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
4100 4254 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4101 4255 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4102 4256 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4103 4257 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4104 4258 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
4105 4259 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
4106 4260 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
4107 4261 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
4108 4262 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
4153 4307 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
4162 4316 9.625747 TGAATCCACACTTAAAATGCATCTATA 57.374 29.630 0.00 0.00 0.00 1.31
4163 4317 8.523915 TGAATCCACACTTAAAATGCATCTAT 57.476 30.769 0.00 0.00 0.00 1.98
4164 4318 7.936496 TGAATCCACACTTAAAATGCATCTA 57.064 32.000 0.00 0.00 0.00 1.98
4165 4319 6.839124 TGAATCCACACTTAAAATGCATCT 57.161 33.333 0.00 0.00 0.00 2.90
4166 4320 7.760794 TGAATGAATCCACACTTAAAATGCATC 59.239 33.333 0.00 0.00 0.00 3.91
4167 4321 7.613585 TGAATGAATCCACACTTAAAATGCAT 58.386 30.769 0.00 0.00 0.00 3.96
4168 4322 6.990798 TGAATGAATCCACACTTAAAATGCA 58.009 32.000 0.00 0.00 0.00 3.96
4169 4323 8.483307 AATGAATGAATCCACACTTAAAATGC 57.517 30.769 0.00 0.00 0.00 3.56
4172 4326 8.772705 GCAAAATGAATGAATCCACACTTAAAA 58.227 29.630 0.00 0.00 0.00 1.52
4173 4327 8.149647 AGCAAAATGAATGAATCCACACTTAAA 58.850 29.630 0.00 0.00 0.00 1.52
4174 4328 7.669427 AGCAAAATGAATGAATCCACACTTAA 58.331 30.769 0.00 0.00 0.00 1.85
4175 4329 7.230849 AGCAAAATGAATGAATCCACACTTA 57.769 32.000 0.00 0.00 0.00 2.24
4176 4330 6.105397 AGCAAAATGAATGAATCCACACTT 57.895 33.333 0.00 0.00 0.00 3.16
4177 4331 5.337009 GGAGCAAAATGAATGAATCCACACT 60.337 40.000 0.00 0.00 0.00 3.55
4178 4332 4.866486 GGAGCAAAATGAATGAATCCACAC 59.134 41.667 0.00 0.00 0.00 3.82
4179 4333 4.380761 CGGAGCAAAATGAATGAATCCACA 60.381 41.667 0.00 0.00 0.00 4.17
4180 4334 4.107622 CGGAGCAAAATGAATGAATCCAC 58.892 43.478 0.00 0.00 0.00 4.02
4181 4335 3.763360 ACGGAGCAAAATGAATGAATCCA 59.237 39.130 0.00 0.00 0.00 3.41
4182 4336 4.376340 ACGGAGCAAAATGAATGAATCC 57.624 40.909 0.00 0.00 0.00 3.01
4183 4337 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
4184 4338 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
4185 4339 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
4186 4340 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
4187 4341 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
4188 4342 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
4189 4343 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
4190 4344 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
4191 4345 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4192 4346 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4193 4347 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4194 4348 3.181469 GGATGGACTACATACGGAGCAAA 60.181 47.826 0.00 0.00 40.72 3.68
4195 4349 2.364324 GGATGGACTACATACGGAGCAA 59.636 50.000 0.00 0.00 40.72 3.91
4196 4350 1.961394 GGATGGACTACATACGGAGCA 59.039 52.381 0.00 0.00 40.72 4.26
4197 4351 1.961394 TGGATGGACTACATACGGAGC 59.039 52.381 0.00 0.00 43.86 4.70
4212 4366 5.814705 GTCTTTGTAGAGATTCCACTGGATG 59.185 44.000 0.00 0.00 0.00 3.51
4213 4367 5.723887 AGTCTTTGTAGAGATTCCACTGGAT 59.276 40.000 0.00 0.00 0.00 3.41
4214 4368 5.087323 AGTCTTTGTAGAGATTCCACTGGA 58.913 41.667 0.00 0.00 0.00 3.86
4215 4369 5.413309 AGTCTTTGTAGAGATTCCACTGG 57.587 43.478 0.00 0.00 0.00 4.00
4216 4370 7.378966 TGTAAGTCTTTGTAGAGATTCCACTG 58.621 38.462 0.00 0.00 0.00 3.66
4217 4371 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
4218 4372 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
4226 4380 9.667107 CCATTCCTAAATGTAAGTCTTTGTAGA 57.333 33.333 0.00 0.00 40.63 2.59
4227 4381 9.667107 TCCATTCCTAAATGTAAGTCTTTGTAG 57.333 33.333 0.00 0.00 40.63 2.74
4228 4382 9.667107 CTCCATTCCTAAATGTAAGTCTTTGTA 57.333 33.333 0.00 0.00 40.63 2.41
4229 4383 7.611855 CCTCCATTCCTAAATGTAAGTCTTTGT 59.388 37.037 0.00 0.00 40.63 2.83
4230 4384 7.067494 CCCTCCATTCCTAAATGTAAGTCTTTG 59.933 40.741 0.00 0.00 40.63 2.77
4231 4385 7.036863 TCCCTCCATTCCTAAATGTAAGTCTTT 60.037 37.037 0.00 0.00 40.63 2.52
4232 4386 6.447084 TCCCTCCATTCCTAAATGTAAGTCTT 59.553 38.462 0.00 0.00 40.63 3.01
4233 4387 5.970640 TCCCTCCATTCCTAAATGTAAGTCT 59.029 40.000 0.00 0.00 40.63 3.24
4234 4388 6.126739 ACTCCCTCCATTCCTAAATGTAAGTC 60.127 42.308 0.00 0.00 40.63 3.01
4235 4389 5.731678 ACTCCCTCCATTCCTAAATGTAAGT 59.268 40.000 0.00 0.00 40.63 2.24
4236 4390 6.253946 ACTCCCTCCATTCCTAAATGTAAG 57.746 41.667 0.00 0.00 40.63 2.34
4237 4391 7.758820 TTACTCCCTCCATTCCTAAATGTAA 57.241 36.000 0.00 0.00 40.63 2.41
4238 4392 7.758820 TTTACTCCCTCCATTCCTAAATGTA 57.241 36.000 0.00 0.00 40.63 2.29
4239 4393 6.652205 TTTACTCCCTCCATTCCTAAATGT 57.348 37.500 0.00 0.00 40.63 2.71
4240 4394 7.561356 ACATTTTACTCCCTCCATTCCTAAATG 59.439 37.037 0.00 0.00 41.69 2.32
4241 4395 7.652554 ACATTTTACTCCCTCCATTCCTAAAT 58.347 34.615 0.00 0.00 0.00 1.40
4242 4396 7.039722 ACATTTTACTCCCTCCATTCCTAAA 57.960 36.000 0.00 0.00 0.00 1.85
4243 4397 6.652205 ACATTTTACTCCCTCCATTCCTAA 57.348 37.500 0.00 0.00 0.00 2.69
4244 4398 7.947782 ATACATTTTACTCCCTCCATTCCTA 57.052 36.000 0.00 0.00 0.00 2.94
4245 4399 6.848562 ATACATTTTACTCCCTCCATTCCT 57.151 37.500 0.00 0.00 0.00 3.36
4246 4400 6.655425 GCTATACATTTTACTCCCTCCATTCC 59.345 42.308 0.00 0.00 0.00 3.01
4247 4401 7.224297 TGCTATACATTTTACTCCCTCCATTC 58.776 38.462 0.00 0.00 0.00 2.67
4248 4402 7.149202 TGCTATACATTTTACTCCCTCCATT 57.851 36.000 0.00 0.00 0.00 3.16
4249 4403 6.763715 TGCTATACATTTTACTCCCTCCAT 57.236 37.500 0.00 0.00 0.00 3.41
4250 4404 6.101150 ACATGCTATACATTTTACTCCCTCCA 59.899 38.462 0.00 0.00 36.64 3.86
4251 4405 6.534634 ACATGCTATACATTTTACTCCCTCC 58.465 40.000 0.00 0.00 36.64 4.30
4252 4406 8.368668 AGTACATGCTATACATTTTACTCCCTC 58.631 37.037 0.00 0.00 36.64 4.30
4253 4407 8.263854 AGTACATGCTATACATTTTACTCCCT 57.736 34.615 0.00 0.00 36.64 4.20
4254 4408 9.991906 TTAGTACATGCTATACATTTTACTCCC 57.008 33.333 0.00 0.00 36.78 4.30
4267 4421 5.360591 GGTGAACAGCTTAGTACATGCTAT 58.639 41.667 6.90 0.00 35.96 2.97
4284 4438 1.787847 CATCGAAGTGCCGGTGAAC 59.212 57.895 1.90 0.00 42.82 3.18
4287 4441 2.741985 TGCATCGAAGTGCCGGTG 60.742 61.111 1.90 0.00 44.43 4.94
4294 4448 2.864097 GCGGTATCATCTGCATCGAAGT 60.864 50.000 0.00 0.00 39.28 3.01
4295 4449 1.723542 GCGGTATCATCTGCATCGAAG 59.276 52.381 0.00 0.00 39.28 3.79
4376 4530 0.035317 ACAGAAGCTCGGATTGCACA 59.965 50.000 0.00 0.00 0.00 4.57
4442 4596 5.056480 CCATTGAAGTATATGCGTCTTGGA 58.944 41.667 17.08 1.54 0.00 3.53
4466 4620 3.200593 GGCATGACGCAGCTCTGG 61.201 66.667 0.00 0.00 45.17 3.86
4467 4621 2.125229 AGGCATGACGCAGCTCTG 60.125 61.111 0.00 0.00 45.17 3.35
4523 4677 1.081376 CGCCGTCTTCGTCAGTCTT 60.081 57.895 0.00 0.00 35.01 3.01
4617 4771 1.341383 GCCAATGGGTCATGACTTCCT 60.341 52.381 24.50 8.43 36.17 3.36
4668 4822 6.127591 TGCAACATCTCTCTCTACCTAAACTC 60.128 42.308 0.00 0.00 0.00 3.01
4734 4890 0.316204 AAGTTGCCAGTGCTCAATGC 59.684 50.000 0.42 0.00 43.25 3.56
4757 4916 8.084073 TCTGAATGGATTTAAACTTGCAAGAAG 58.916 33.333 32.50 8.03 0.00 2.85
4771 4930 3.633986 GAGCCCGAAATCTGAATGGATTT 59.366 43.478 2.65 2.65 45.19 2.17
4791 4950 7.250569 TCTGAACAAAGTTAAACTTGCAAGAG 58.749 34.615 32.50 13.70 38.66 2.85
4852 5016 0.899720 CCAGGGACGGTAGTTTGCTA 59.100 55.000 0.00 0.00 0.00 3.49
4854 5018 2.038837 GCCAGGGACGGTAGTTTGC 61.039 63.158 0.00 0.00 0.00 3.68
4855 5019 1.376812 GGCCAGGGACGGTAGTTTG 60.377 63.158 0.00 0.00 0.00 2.93
4856 5020 1.538135 AGGCCAGGGACGGTAGTTT 60.538 57.895 5.01 0.00 0.00 2.66
4859 5023 3.155167 GGAGGCCAGGGACGGTAG 61.155 72.222 5.01 0.00 0.00 3.18
4860 5024 3.674050 GAGGAGGCCAGGGACGGTA 62.674 68.421 5.01 0.00 0.00 4.02
4863 5027 3.151022 GAGAGGAGGCCAGGGACG 61.151 72.222 5.01 0.00 0.00 4.79
4865 5029 4.095400 GGGAGAGGAGGCCAGGGA 62.095 72.222 5.01 0.00 0.00 4.20
4869 5033 2.041265 GAAGGGGAGAGGAGGCCA 59.959 66.667 5.01 0.00 0.00 5.36
4906 5070 1.211818 GCTTCGCCTGCGTCTCATAG 61.212 60.000 11.68 2.64 40.74 2.23
4907 5071 1.226974 GCTTCGCCTGCGTCTCATA 60.227 57.895 11.68 0.00 40.74 2.15
4908 5072 2.510238 GCTTCGCCTGCGTCTCAT 60.510 61.111 11.68 0.00 40.74 2.90
4909 5073 3.921767 CTGCTTCGCCTGCGTCTCA 62.922 63.158 11.68 6.78 40.74 3.27
4910 5074 3.184683 CTGCTTCGCCTGCGTCTC 61.185 66.667 11.68 2.54 40.74 3.36
4921 5085 2.761071 CCTCTTCGAAGGCTGCTTC 58.239 57.895 24.37 0.84 0.00 3.86
4932 5096 4.880537 AGCCGCATCGCCTCTTCG 62.881 66.667 0.00 0.00 0.00 3.79
4954 5118 3.058160 CCGGCAAGCCCAGTTGAG 61.058 66.667 5.34 0.00 0.00 3.02
5002 5166 4.265056 ACCCACACTTGGTCGGCC 62.265 66.667 0.00 0.00 42.10 6.13
5003 5167 2.978010 CACCCACACTTGGTCGGC 60.978 66.667 0.00 0.00 42.10 5.54
5005 5169 1.891919 CCACACCCACACTTGGTCG 60.892 63.158 0.00 0.00 42.10 4.79
5007 5171 2.123897 GCCACACCCACACTTGGT 60.124 61.111 0.00 0.00 42.10 3.67
5008 5172 3.286751 CGCCACACCCACACTTGG 61.287 66.667 0.00 0.00 43.50 3.61
5009 5173 3.964875 GCGCCACACCCACACTTG 61.965 66.667 0.00 0.00 0.00 3.16
5035 5205 2.678190 GCCAGCTATAAGGCCGGATTAG 60.678 54.545 5.05 0.00 45.18 1.73
5036 5206 1.278127 GCCAGCTATAAGGCCGGATTA 59.722 52.381 5.05 3.38 45.18 1.75
5038 5208 1.679898 GCCAGCTATAAGGCCGGAT 59.320 57.895 5.05 0.00 45.18 4.18
5039 5209 3.148084 GCCAGCTATAAGGCCGGA 58.852 61.111 5.05 0.00 45.18 5.14
5044 5222 0.600255 CCGTTCGGCCAGCTATAAGG 60.600 60.000 2.24 0.00 0.00 2.69
5089 5267 2.357327 TTAATGCTGAGTACGCGTGT 57.643 45.000 24.59 9.17 0.00 4.49
5101 5279 1.006400 AGCTTCCAGCCCTTTAATGCT 59.994 47.619 0.00 0.00 43.77 3.79
5105 5283 1.372501 AGGAGCTTCCAGCCCTTTAA 58.627 50.000 5.21 0.00 43.77 1.52
5115 5293 1.373121 GCGCGGTATAGGAGCTTCC 60.373 63.158 8.83 0.00 36.58 3.46
5116 5294 1.373121 GGCGCGGTATAGGAGCTTC 60.373 63.158 8.83 0.00 0.00 3.86
5259 5523 6.353582 GCGCAATAAATAACGTGTCTACATTC 59.646 38.462 0.30 0.00 0.00 2.67
5364 5629 9.744468 ACTACTTTTTGAATATGCGAACTTTTT 57.256 25.926 0.00 0.00 0.00 1.94
5413 5678 9.474920 TTGAATCCATGAACTGTTTTTGAATAC 57.525 29.630 0.00 0.00 0.00 1.89
5431 5696 7.452880 AATCGATGAACTTCTTTTGAATCCA 57.547 32.000 0.00 0.00 37.85 3.41
5591 5877 7.719689 TCGATGAACTTATTTTCAAAATCGC 57.280 32.000 0.00 0.00 38.95 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.