Multiple sequence alignment - TraesCS4B01G084500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G084500 chr4B 100.000 2472 0 0 1 2472 82919961 82917490 0.000000e+00 4566.0
1 TraesCS4B01G084500 chr4B 86.780 295 34 4 2182 2472 34774714 34775007 8.530000e-85 324.0
2 TraesCS4B01G084500 chr4B 86.806 288 36 2 2185 2470 639292831 639292544 1.100000e-83 320.0
3 TraesCS4B01G084500 chr4B 84.906 106 15 1 2034 2139 82917881 82917777 3.360000e-19 106.0
4 TraesCS4B01G084500 chr4B 84.906 106 15 1 2081 2185 82917928 82917823 3.360000e-19 106.0
5 TraesCS4B01G084500 chr4D 88.808 1644 92 24 80 1696 55646076 55644498 0.000000e+00 1932.0
6 TraesCS4B01G084500 chr4D 86.767 665 39 12 1537 2185 55597722 55597091 0.000000e+00 695.0
7 TraesCS4B01G084500 chr4D 91.991 437 24 9 1758 2185 55642577 55642143 9.780000e-169 603.0
8 TraesCS4B01G084500 chr4D 86.486 296 36 4 2179 2472 450526175 450526468 3.070000e-84 322.0
9 TraesCS4B01G084500 chr4D 85.841 113 15 1 2073 2185 55597248 55597137 4.320000e-23 119.0
10 TraesCS4B01G084500 chr4D 94.521 73 2 2 2118 2190 55597249 55597179 7.230000e-21 111.0
11 TraesCS4B01G084500 chr4D 92.308 78 6 0 1 78 381437578 381437655 7.230000e-21 111.0
12 TraesCS4B01G084500 chr4D 90.244 82 7 1 1 82 64226118 64226198 3.360000e-19 106.0
13 TraesCS4B01G084500 chr4D 88.750 80 8 1 2106 2185 55642267 55642189 2.020000e-16 97.1
14 TraesCS4B01G084500 chr4D 98.039 51 1 0 1455 1505 55597774 55597724 3.390000e-14 89.8
15 TraesCS4B01G084500 chr4A 94.955 555 20 3 959 1505 541172379 541172933 0.000000e+00 863.0
16 TraesCS4B01G084500 chr4A 90.596 638 29 10 78 699 541171598 541172220 0.000000e+00 817.0
17 TraesCS4B01G084500 chr4A 97.315 149 4 0 723 871 541172213 541172361 1.130000e-63 254.0
18 TraesCS4B01G084500 chr4A 87.342 158 11 2 1537 1693 541172935 541173084 3.270000e-39 172.0
19 TraesCS4B01G084500 chr1B 89.384 292 29 2 2182 2472 68131473 68131183 1.400000e-97 366.0
20 TraesCS4B01G084500 chr3D 87.713 293 33 3 2182 2472 438056849 438056558 3.050000e-89 339.0
21 TraesCS4B01G084500 chr3D 92.405 79 6 0 1 79 223115478 223115556 2.010000e-21 113.0
22 TraesCS4B01G084500 chr2D 86.986 292 36 2 2182 2472 110993731 110993441 6.590000e-86 327.0
23 TraesCS4B01G084500 chr2D 86.441 295 39 1 2179 2472 595152198 595152492 3.070000e-84 322.0
24 TraesCS4B01G084500 chrUn 86.644 292 36 3 2182 2472 9974845 9975134 1.100000e-83 320.0
25 TraesCS4B01G084500 chr5D 86.348 293 37 3 2182 2472 93060594 93060303 1.430000e-82 316.0
26 TraesCS4B01G084500 chr5D 89.535 86 9 0 1 86 45862510 45862595 2.600000e-20 110.0
27 TraesCS4B01G084500 chr5B 92.405 79 6 0 1 79 575783655 575783577 2.010000e-21 113.0
28 TraesCS4B01G084500 chr5B 91.250 80 7 0 1 80 662072692 662072771 2.600000e-20 110.0
29 TraesCS4B01G084500 chr6D 91.250 80 7 0 2 81 41379188 41379109 2.600000e-20 110.0
30 TraesCS4B01G084500 chr2A 90.244 82 8 0 1 82 450536939 450536858 9.350000e-20 108.0
31 TraesCS4B01G084500 chr7D 88.506 87 9 1 1 87 369901772 369901857 1.210000e-18 104.0
32 TraesCS4B01G084500 chr3B 97.059 34 0 1 488 521 671868484 671868516 3.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G084500 chr4B 82917490 82919961 2471 True 1592.666667 4566 89.937333 1 2472 3 chr4B.!!$R2 2471
1 TraesCS4B01G084500 chr4D 55642143 55646076 3933 True 877.366667 1932 89.849667 80 2185 3 chr4D.!!$R2 2105
2 TraesCS4B01G084500 chr4D 55597091 55597774 683 True 253.700000 695 91.292000 1455 2190 4 chr4D.!!$R1 735
3 TraesCS4B01G084500 chr4A 541171598 541173084 1486 False 526.500000 863 92.552000 78 1693 4 chr4A.!!$F1 1615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 540 0.035725 TCAGTTGATGCAGAGGCCTG 60.036 55.0 12.0 0.0 43.22 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 1553 0.03889 TTCCCATGGCCGTTTCATCA 59.961 50.0 6.09 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.225497 CGGGTTCTTCTCCATGCC 57.775 61.111 0.00 0.00 0.00 4.40
18 19 1.299648 CGGGTTCTTCTCCATGCCA 59.700 57.895 0.00 0.00 0.00 4.92
19 20 1.026718 CGGGTTCTTCTCCATGCCAC 61.027 60.000 0.00 0.00 0.00 5.01
20 21 0.038166 GGGTTCTTCTCCATGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
21 22 1.168714 GGTTCTTCTCCATGCCACAC 58.831 55.000 0.00 0.00 0.00 3.82
22 23 0.798776 GTTCTTCTCCATGCCACACG 59.201 55.000 0.00 0.00 0.00 4.49
23 24 0.684535 TTCTTCTCCATGCCACACGA 59.315 50.000 0.00 0.00 0.00 4.35
24 25 0.247460 TCTTCTCCATGCCACACGAG 59.753 55.000 0.00 0.00 0.00 4.18
25 26 0.742281 CTTCTCCATGCCACACGAGG 60.742 60.000 0.00 0.00 0.00 4.63
33 34 4.047059 CCACACGAGGCGTACGGT 62.047 66.667 18.39 2.96 38.32 4.83
34 35 2.689785 CCACACGAGGCGTACGGTA 61.690 63.158 18.39 0.00 38.32 4.02
35 36 1.512734 CACACGAGGCGTACGGTAC 60.513 63.158 18.39 8.25 38.32 3.34
36 37 1.965930 ACACGAGGCGTACGGTACA 60.966 57.895 18.39 0.00 38.32 2.90
37 38 1.209898 CACGAGGCGTACGGTACAA 59.790 57.895 18.39 0.00 38.32 2.41
38 39 1.067199 CACGAGGCGTACGGTACAAC 61.067 60.000 18.39 9.59 38.32 3.32
39 40 1.514873 CGAGGCGTACGGTACAACC 60.515 63.158 18.39 16.72 34.05 3.77
40 41 1.586028 GAGGCGTACGGTACAACCA 59.414 57.895 22.32 0.00 38.47 3.67
41 42 0.174162 GAGGCGTACGGTACAACCAT 59.826 55.000 22.32 11.89 38.47 3.55
42 43 0.174162 AGGCGTACGGTACAACCATC 59.826 55.000 22.32 0.00 38.47 3.51
43 44 0.807275 GGCGTACGGTACAACCATCC 60.807 60.000 18.39 1.21 38.47 3.51
45 46 0.451383 CGTACGGTACAACCATCCGA 59.549 55.000 17.69 0.00 46.05 4.55
46 47 1.066002 CGTACGGTACAACCATCCGAT 59.934 52.381 17.69 0.00 46.05 4.18
47 48 2.290367 CGTACGGTACAACCATCCGATA 59.710 50.000 17.69 0.00 46.05 2.92
48 49 2.877043 ACGGTACAACCATCCGATAC 57.123 50.000 9.75 0.00 46.05 2.24
49 50 2.101783 ACGGTACAACCATCCGATACA 58.898 47.619 9.75 0.00 46.05 2.29
50 51 2.100252 ACGGTACAACCATCCGATACAG 59.900 50.000 9.75 0.00 46.05 2.74
51 52 2.480845 GGTACAACCATCCGATACAGC 58.519 52.381 0.00 0.00 38.42 4.40
52 53 2.159014 GGTACAACCATCCGATACAGCA 60.159 50.000 0.00 0.00 38.42 4.41
53 54 3.494398 GGTACAACCATCCGATACAGCAT 60.494 47.826 0.00 0.00 38.42 3.79
54 55 4.262292 GGTACAACCATCCGATACAGCATA 60.262 45.833 0.00 0.00 38.42 3.14
55 56 3.728845 ACAACCATCCGATACAGCATAC 58.271 45.455 0.00 0.00 0.00 2.39
56 57 2.724977 ACCATCCGATACAGCATACG 57.275 50.000 0.00 0.00 0.00 3.06
57 58 1.961394 ACCATCCGATACAGCATACGT 59.039 47.619 0.00 0.00 0.00 3.57
58 59 2.288213 ACCATCCGATACAGCATACGTG 60.288 50.000 0.00 0.00 0.00 4.49
59 60 2.288213 CCATCCGATACAGCATACGTGT 60.288 50.000 0.00 0.00 0.00 4.49
60 61 2.485266 TCCGATACAGCATACGTGTG 57.515 50.000 8.09 8.09 0.00 3.82
61 62 2.018515 TCCGATACAGCATACGTGTGA 58.981 47.619 17.22 0.00 0.00 3.58
62 63 2.117137 CCGATACAGCATACGTGTGAC 58.883 52.381 17.22 7.50 0.00 3.67
63 64 2.478879 CCGATACAGCATACGTGTGACA 60.479 50.000 17.22 0.00 0.00 3.58
64 65 2.783832 CGATACAGCATACGTGTGACAG 59.216 50.000 17.22 6.97 0.00 3.51
65 66 3.730963 CGATACAGCATACGTGTGACAGT 60.731 47.826 17.22 12.29 0.00 3.55
66 67 2.526304 ACAGCATACGTGTGACAGTT 57.474 45.000 17.22 0.00 0.00 3.16
67 68 3.653539 ACAGCATACGTGTGACAGTTA 57.346 42.857 17.22 0.00 0.00 2.24
68 69 4.188247 ACAGCATACGTGTGACAGTTAT 57.812 40.909 17.22 0.00 0.00 1.89
69 70 4.174009 ACAGCATACGTGTGACAGTTATC 58.826 43.478 17.22 0.00 0.00 1.75
70 71 3.240631 CAGCATACGTGTGACAGTTATCG 59.759 47.826 17.22 0.00 0.00 2.92
71 72 2.534349 GCATACGTGTGACAGTTATCGG 59.466 50.000 17.22 0.00 0.00 4.18
72 73 2.267188 TACGTGTGACAGTTATCGGC 57.733 50.000 0.00 0.00 0.00 5.54
73 74 0.731514 ACGTGTGACAGTTATCGGCG 60.732 55.000 0.00 0.00 0.00 6.46
74 75 0.731514 CGTGTGACAGTTATCGGCGT 60.732 55.000 6.85 0.00 0.00 5.68
75 76 0.989890 GTGTGACAGTTATCGGCGTC 59.010 55.000 6.85 0.00 0.00 5.19
76 77 0.108992 TGTGACAGTTATCGGCGTCC 60.109 55.000 6.85 0.00 0.00 4.79
96 97 5.059833 GTCCTTAATCATTAGCTGGTGAGG 58.940 45.833 0.00 0.00 0.00 3.86
97 98 4.721776 TCCTTAATCATTAGCTGGTGAGGT 59.278 41.667 0.00 0.00 0.00 3.85
136 137 9.567848 GCTTAATTTATTTAGTTTGCTGCAGTA 57.432 29.630 16.64 8.31 0.00 2.74
359 372 0.982673 GACGAGTGTCAAATCCGACG 59.017 55.000 0.00 0.00 44.82 5.12
360 373 0.313043 ACGAGTGTCAAATCCGACGT 59.687 50.000 0.00 0.00 38.84 4.34
374 395 2.227388 TCCGACGTTCCTAGTTTCAGAC 59.773 50.000 0.00 0.00 0.00 3.51
399 420 4.072131 GGTGCCTGAAACTTGTGAGATAA 58.928 43.478 0.00 0.00 0.00 1.75
400 421 4.518970 GGTGCCTGAAACTTGTGAGATAAA 59.481 41.667 0.00 0.00 0.00 1.40
401 422 5.335191 GGTGCCTGAAACTTGTGAGATAAAG 60.335 44.000 0.00 0.00 0.00 1.85
402 423 5.239525 GTGCCTGAAACTTGTGAGATAAAGT 59.760 40.000 0.00 0.00 38.25 2.66
403 424 6.426937 GTGCCTGAAACTTGTGAGATAAAGTA 59.573 38.462 0.00 0.00 35.60 2.24
404 425 6.426937 TGCCTGAAACTTGTGAGATAAAGTAC 59.573 38.462 0.00 0.00 35.60 2.73
426 447 5.755849 ACAAGATTGGATACCCCTTTGTAG 58.244 41.667 0.00 0.00 35.38 2.74
433 454 3.118371 GGATACCCCTTTGTAGTCAGGTG 60.118 52.174 0.00 0.00 0.00 4.00
444 465 2.540265 AGTCAGGTGCAGAGAAGTTG 57.460 50.000 0.00 0.00 0.00 3.16
518 539 0.917533 ATCAGTTGATGCAGAGGCCT 59.082 50.000 3.86 3.86 40.13 5.19
519 540 0.035725 TCAGTTGATGCAGAGGCCTG 60.036 55.000 12.00 0.00 43.22 4.85
527 548 2.996395 CAGAGGCCTGGCACATCT 59.004 61.111 22.05 16.71 38.20 2.90
606 631 3.550437 AATCAATGGTTCCTCTCTCCG 57.450 47.619 0.00 0.00 0.00 4.63
610 635 2.366916 CAATGGTTCCTCTCTCCGCTAT 59.633 50.000 0.00 0.00 0.00 2.97
641 666 8.548880 TTTCAGCTGGTAGTAAATACTCCTAT 57.451 34.615 15.13 0.00 37.73 2.57
700 729 4.992381 ACAGCACGTTTATCTTTCAGAC 57.008 40.909 0.00 0.00 0.00 3.51
701 730 3.428870 ACAGCACGTTTATCTTTCAGACG 59.571 43.478 0.00 0.00 39.43 4.18
702 731 3.428870 CAGCACGTTTATCTTTCAGACGT 59.571 43.478 0.00 0.00 46.50 4.34
703 732 4.056050 AGCACGTTTATCTTTCAGACGTT 58.944 39.130 0.00 0.00 43.53 3.99
704 733 4.150098 AGCACGTTTATCTTTCAGACGTTC 59.850 41.667 0.00 0.00 43.53 3.95
705 734 4.615386 CACGTTTATCTTTCAGACGTTCG 58.385 43.478 0.00 0.00 43.53 3.95
706 735 3.120782 ACGTTTATCTTTCAGACGTTCGC 59.879 43.478 0.00 0.00 43.53 4.70
707 736 3.481467 CGTTTATCTTTCAGACGTTCGCC 60.481 47.826 0.00 0.00 0.00 5.54
708 737 3.306917 TTATCTTTCAGACGTTCGCCA 57.693 42.857 0.00 0.00 0.00 5.69
709 738 2.386661 ATCTTTCAGACGTTCGCCAT 57.613 45.000 0.00 0.00 0.00 4.40
710 739 1.710013 TCTTTCAGACGTTCGCCATC 58.290 50.000 0.00 0.00 0.00 3.51
711 740 1.000394 TCTTTCAGACGTTCGCCATCA 60.000 47.619 0.00 0.00 0.00 3.07
712 741 1.391485 CTTTCAGACGTTCGCCATCAG 59.609 52.381 0.00 0.00 0.00 2.90
713 742 0.601057 TTCAGACGTTCGCCATCAGA 59.399 50.000 0.00 0.00 0.00 3.27
714 743 0.817654 TCAGACGTTCGCCATCAGAT 59.182 50.000 0.00 0.00 0.00 2.90
715 744 1.202302 TCAGACGTTCGCCATCAGATC 60.202 52.381 0.00 0.00 0.00 2.75
716 745 1.107114 AGACGTTCGCCATCAGATCT 58.893 50.000 0.00 0.00 0.00 2.75
717 746 2.033424 CAGACGTTCGCCATCAGATCTA 59.967 50.000 0.00 0.00 0.00 1.98
718 747 2.033550 AGACGTTCGCCATCAGATCTAC 59.966 50.000 0.00 0.00 0.00 2.59
719 748 2.025155 ACGTTCGCCATCAGATCTACT 58.975 47.619 0.00 0.00 0.00 2.57
720 749 2.223595 ACGTTCGCCATCAGATCTACTG 60.224 50.000 0.00 0.00 46.97 2.74
786 815 4.916041 AAGGGGTAAAAGTACTACCACC 57.084 45.455 11.29 10.59 42.93 4.61
871 900 6.206243 ACTGCATCAATAAATACATGGAGCTC 59.794 38.462 4.71 4.71 38.03 4.09
872 901 6.063404 TGCATCAATAAATACATGGAGCTCA 58.937 36.000 17.19 1.87 0.00 4.26
873 902 6.206048 TGCATCAATAAATACATGGAGCTCAG 59.794 38.462 17.19 7.29 0.00 3.35
874 903 6.349115 GCATCAATAAATACATGGAGCTCAGG 60.349 42.308 17.19 6.51 0.00 3.86
875 904 6.499106 TCAATAAATACATGGAGCTCAGGA 57.501 37.500 17.19 1.28 0.00 3.86
876 905 6.528321 TCAATAAATACATGGAGCTCAGGAG 58.472 40.000 17.19 4.61 0.00 3.69
1013 1048 3.300388 CCTCTGCTATGGAGTACAAGGA 58.700 50.000 0.00 0.00 0.00 3.36
1158 1193 1.830408 CTACCTGGGCCTCTCTCGG 60.830 68.421 4.53 0.00 0.00 4.63
1210 1245 3.458163 CCGCTACTTCGCCTCCCA 61.458 66.667 0.00 0.00 0.00 4.37
1285 1320 1.200483 CGCTGCAGATGTAAGTACGG 58.800 55.000 20.43 0.00 0.00 4.02
1314 1360 6.801539 TCTACCTTGTTATTTGCTCTGTTG 57.198 37.500 0.00 0.00 0.00 3.33
1507 1553 6.273825 CCTGCGAACTGTAGACTATAACATT 58.726 40.000 0.00 0.00 30.84 2.71
1508 1554 6.199154 CCTGCGAACTGTAGACTATAACATTG 59.801 42.308 0.00 0.00 30.84 2.82
1509 1555 6.859017 TGCGAACTGTAGACTATAACATTGA 58.141 36.000 0.00 0.00 0.00 2.57
1518 1564 6.604735 AGACTATAACATTGATGAAACGGC 57.395 37.500 0.00 0.00 0.00 5.68
1525 1571 0.038890 TTGATGAAACGGCCATGGGA 59.961 50.000 15.13 0.00 0.00 4.37
1535 1581 1.037030 GGCCATGGGAAATTCGCTGA 61.037 55.000 15.13 0.00 0.00 4.26
1578 1624 5.938322 CTGAGTTCAGAGTCTTAGAGTGAC 58.062 45.833 2.97 0.00 46.59 3.67
1579 1625 5.626142 TGAGTTCAGAGTCTTAGAGTGACT 58.374 41.667 0.00 0.00 46.17 3.41
1580 1626 5.471797 TGAGTTCAGAGTCTTAGAGTGACTG 59.528 44.000 0.00 0.00 43.88 3.51
1581 1627 5.626142 AGTTCAGAGTCTTAGAGTGACTGA 58.374 41.667 4.86 4.86 43.88 3.41
1582 1628 5.705441 AGTTCAGAGTCTTAGAGTGACTGAG 59.295 44.000 8.01 0.00 43.88 3.35
1583 1629 5.235850 TCAGAGTCTTAGAGTGACTGAGT 57.764 43.478 4.86 0.00 43.88 3.41
1640 1687 5.523438 ACAAGTTTAAATTTCAAGCCGGA 57.477 34.783 5.05 0.00 0.00 5.14
1643 1690 4.866921 AGTTTAAATTTCAAGCCGGACAC 58.133 39.130 5.05 0.00 0.00 3.67
1644 1691 4.339814 AGTTTAAATTTCAAGCCGGACACA 59.660 37.500 5.05 0.00 0.00 3.72
1693 1744 4.826733 ACAATGCTAATTTCACACACCTGA 59.173 37.500 0.00 0.00 0.00 3.86
1698 1749 2.169832 ATTTCACACACCTGAGTCGG 57.830 50.000 0.00 0.00 0.00 4.79
1699 1750 0.828022 TTTCACACACCTGAGTCGGT 59.172 50.000 0.00 0.00 37.93 4.69
1700 1751 0.387929 TTCACACACCTGAGTCGGTC 59.612 55.000 4.01 0.00 34.29 4.79
1703 1754 0.832135 ACACACCTGAGTCGGTCCAT 60.832 55.000 4.01 0.00 34.29 3.41
1705 1756 0.832135 ACACCTGAGTCGGTCCATGT 60.832 55.000 4.01 0.00 34.29 3.21
1706 1757 0.108615 CACCTGAGTCGGTCCATGTC 60.109 60.000 4.01 0.00 34.29 3.06
1707 1758 0.251832 ACCTGAGTCGGTCCATGTCT 60.252 55.000 0.00 0.00 29.14 3.41
1708 1759 0.457851 CCTGAGTCGGTCCATGTCTC 59.542 60.000 0.00 0.00 0.00 3.36
1711 1762 0.895530 GAGTCGGTCCATGTCTCCAA 59.104 55.000 0.00 0.00 0.00 3.53
1744 2085 5.818136 ACGGGAGTGAATGTTAAATGATG 57.182 39.130 0.00 0.00 44.82 3.07
1755 2096 9.179552 TGAATGTTAAATGATGTTTTGTTCTCG 57.820 29.630 0.00 0.00 0.00 4.04
1818 3728 3.403038 GCTGTTCCTAGAGCTTCAACAA 58.597 45.455 0.00 0.00 37.67 2.83
1881 3791 6.127479 GCCAAGTCATTTGTCCCATAATGTAA 60.127 38.462 0.00 0.00 34.87 2.41
2071 4000 2.115343 ATTTCTCGGGCAAGTTCTCC 57.885 50.000 0.00 0.00 0.00 3.71
2091 4020 6.598503 TCTCCGTAATATTACTCTGGTCAGA 58.401 40.000 20.54 12.21 35.85 3.27
2097 4026 7.644551 CGTAATATTACTCTGGTCAGACAACTC 59.355 40.741 20.54 0.00 33.22 3.01
2108 4038 4.082733 GGTCAGACAACTCTTTTATTGGGC 60.083 45.833 2.17 0.00 0.00 5.36
2143 4073 2.128771 TTACTCTGGCCAGGCAATTC 57.871 50.000 32.23 0.00 0.00 2.17
2185 4115 5.304614 TCTGTAATATTACTCTGGTCAGGCC 59.695 44.000 22.82 0.00 34.77 5.19
2186 4116 4.966168 TGTAATATTACTCTGGTCAGGCCA 59.034 41.667 22.82 0.00 38.51 5.36
2187 4117 5.427157 TGTAATATTACTCTGGTCAGGCCAA 59.573 40.000 22.82 0.00 39.45 4.52
2188 4118 6.631766 TGTAATATTACTCTGGTCAGGCCAAC 60.632 42.308 22.82 1.87 39.45 3.77
2189 4119 8.733539 TGTAATATTACTCTGGTCAGGCCAACT 61.734 40.741 22.82 0.00 39.45 3.16
2193 4123 3.667476 TGGTCAGGCCAACTCCAA 58.333 55.556 5.01 0.00 45.94 3.53
2194 4124 2.163454 TGGTCAGGCCAACTCCAAT 58.837 52.632 5.01 0.00 45.94 3.16
2195 4125 0.251297 TGGTCAGGCCAACTCCAATG 60.251 55.000 5.01 0.00 45.94 2.82
2196 4126 0.251341 GGTCAGGCCAACTCCAATGT 60.251 55.000 5.01 0.00 37.17 2.71
2197 4127 0.883833 GTCAGGCCAACTCCAATGTG 59.116 55.000 5.01 0.00 0.00 3.21
2198 4128 0.895100 TCAGGCCAACTCCAATGTGC 60.895 55.000 5.01 0.00 0.00 4.57
2199 4129 1.973281 AGGCCAACTCCAATGTGCG 60.973 57.895 5.01 0.00 0.00 5.34
2200 4130 1.971167 GGCCAACTCCAATGTGCGA 60.971 57.895 0.00 0.00 0.00 5.10
2201 4131 1.210155 GCCAACTCCAATGTGCGAC 59.790 57.895 0.00 0.00 0.00 5.19
2202 4132 1.875963 CCAACTCCAATGTGCGACC 59.124 57.895 0.00 0.00 0.00 4.79
2203 4133 0.606401 CCAACTCCAATGTGCGACCT 60.606 55.000 0.00 0.00 0.00 3.85
2204 4134 0.798776 CAACTCCAATGTGCGACCTC 59.201 55.000 0.00 0.00 0.00 3.85
2205 4135 0.396435 AACTCCAATGTGCGACCTCA 59.604 50.000 0.00 0.00 0.00 3.86
2206 4136 0.615331 ACTCCAATGTGCGACCTCAT 59.385 50.000 0.00 0.00 0.00 2.90
2207 4137 1.293924 CTCCAATGTGCGACCTCATC 58.706 55.000 0.00 0.00 0.00 2.92
2208 4138 0.107703 TCCAATGTGCGACCTCATCC 60.108 55.000 0.00 0.00 0.00 3.51
2209 4139 1.097547 CCAATGTGCGACCTCATCCC 61.098 60.000 0.00 0.00 0.00 3.85
2210 4140 1.153369 AATGTGCGACCTCATCCCG 60.153 57.895 0.00 0.00 0.00 5.14
2211 4141 1.899437 AATGTGCGACCTCATCCCGT 61.899 55.000 0.00 0.00 0.00 5.28
2212 4142 2.202756 GTGCGACCTCATCCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
2213 4143 3.458163 TGCGACCTCATCCCGTCC 61.458 66.667 0.00 0.00 0.00 4.79
2214 4144 4.570663 GCGACCTCATCCCGTCCG 62.571 72.222 0.00 0.00 0.00 4.79
2215 4145 3.900892 CGACCTCATCCCGTCCGG 61.901 72.222 0.00 0.00 0.00 5.14
2216 4146 4.222847 GACCTCATCCCGTCCGGC 62.223 72.222 0.00 0.00 0.00 6.13
2245 4175 3.446799 GTTTGGGGTAAAACGAACAACC 58.553 45.455 0.00 0.00 32.48 3.77
2246 4176 2.431954 TGGGGTAAAACGAACAACCA 57.568 45.000 0.00 0.00 33.46 3.67
2247 4177 2.299521 TGGGGTAAAACGAACAACCAG 58.700 47.619 0.00 0.00 33.46 4.00
2248 4178 2.092538 TGGGGTAAAACGAACAACCAGA 60.093 45.455 0.00 0.00 33.46 3.86
2249 4179 2.291465 GGGGTAAAACGAACAACCAGAC 59.709 50.000 0.00 0.00 33.46 3.51
2250 4180 2.032636 GGGTAAAACGAACAACCAGACG 60.033 50.000 0.00 0.00 33.46 4.18
2251 4181 2.032636 GGTAAAACGAACAACCAGACGG 60.033 50.000 0.00 0.00 38.77 4.79
2278 4208 4.096003 CGACGGCCTGGACCCATT 62.096 66.667 0.00 0.00 0.00 3.16
2279 4209 2.355115 GACGGCCTGGACCCATTT 59.645 61.111 0.00 0.00 0.00 2.32
2280 4210 2.035626 ACGGCCTGGACCCATTTG 59.964 61.111 0.00 0.00 0.00 2.32
2281 4211 2.354729 CGGCCTGGACCCATTTGA 59.645 61.111 0.00 0.00 0.00 2.69
2282 4212 1.076777 CGGCCTGGACCCATTTGAT 60.077 57.895 0.00 0.00 0.00 2.57
2283 4213 1.103398 CGGCCTGGACCCATTTGATC 61.103 60.000 0.00 0.00 0.00 2.92
2284 4214 0.756815 GGCCTGGACCCATTTGATCC 60.757 60.000 0.00 0.00 0.00 3.36
2285 4215 1.103398 GCCTGGACCCATTTGATCCG 61.103 60.000 0.00 0.00 35.06 4.18
2286 4216 0.255890 CCTGGACCCATTTGATCCGT 59.744 55.000 0.00 0.00 35.06 4.69
2287 4217 1.340991 CCTGGACCCATTTGATCCGTT 60.341 52.381 0.00 0.00 35.06 4.44
2288 4218 2.446435 CTGGACCCATTTGATCCGTTT 58.554 47.619 0.00 0.00 35.06 3.60
2289 4219 2.825532 CTGGACCCATTTGATCCGTTTT 59.174 45.455 0.00 0.00 35.06 2.43
2290 4220 2.560542 TGGACCCATTTGATCCGTTTTG 59.439 45.455 0.00 0.00 35.06 2.44
2291 4221 2.560981 GGACCCATTTGATCCGTTTTGT 59.439 45.455 0.00 0.00 0.00 2.83
2292 4222 3.574614 GACCCATTTGATCCGTTTTGTG 58.425 45.455 0.00 0.00 0.00 3.33
2293 4223 2.962421 ACCCATTTGATCCGTTTTGTGT 59.038 40.909 0.00 0.00 0.00 3.72
2294 4224 3.005367 ACCCATTTGATCCGTTTTGTGTC 59.995 43.478 0.00 0.00 0.00 3.67
2295 4225 3.574614 CCATTTGATCCGTTTTGTGTCC 58.425 45.455 0.00 0.00 0.00 4.02
2296 4226 3.233578 CATTTGATCCGTTTTGTGTCCG 58.766 45.455 0.00 0.00 0.00 4.79
2297 4227 1.231221 TTGATCCGTTTTGTGTCCGG 58.769 50.000 0.00 0.00 43.03 5.14
2298 4228 0.604243 TGATCCGTTTTGTGTCCGGG 60.604 55.000 0.00 0.00 41.98 5.73
2299 4229 0.604511 GATCCGTTTTGTGTCCGGGT 60.605 55.000 0.00 0.00 41.98 5.28
2300 4230 0.604511 ATCCGTTTTGTGTCCGGGTC 60.605 55.000 0.00 0.00 41.98 4.46
2301 4231 2.600475 CCGTTTTGTGTCCGGGTCG 61.600 63.158 0.00 0.00 38.09 4.79
2302 4232 1.592131 CGTTTTGTGTCCGGGTCGA 60.592 57.895 0.00 0.00 0.00 4.20
2303 4233 1.824272 CGTTTTGTGTCCGGGTCGAC 61.824 60.000 7.13 7.13 0.00 4.20
2304 4234 1.227615 TTTTGTGTCCGGGTCGACC 60.228 57.895 27.04 27.04 31.35 4.79
2316 4246 2.967397 TCGACCCATTTCGAGCGT 59.033 55.556 0.00 0.00 43.01 5.07
2317 4247 2.182496 TCGACCCATTTCGAGCGTA 58.818 52.632 0.00 0.00 43.01 4.42
2318 4248 0.527113 TCGACCCATTTCGAGCGTAA 59.473 50.000 0.00 0.00 43.01 3.18
2319 4249 1.067706 TCGACCCATTTCGAGCGTAAA 60.068 47.619 0.00 0.00 43.01 2.01
2320 4250 1.060122 CGACCCATTTCGAGCGTAAAC 59.940 52.381 0.00 0.00 41.78 2.01
2321 4251 2.070783 GACCCATTTCGAGCGTAAACA 58.929 47.619 0.00 0.00 0.00 2.83
2322 4252 2.676342 GACCCATTTCGAGCGTAAACAT 59.324 45.455 0.00 0.00 0.00 2.71
2323 4253 2.418628 ACCCATTTCGAGCGTAAACATG 59.581 45.455 0.00 0.00 0.00 3.21
2324 4254 2.440501 CCATTTCGAGCGTAAACATGC 58.559 47.619 0.00 0.00 0.00 4.06
2325 4255 2.159585 CCATTTCGAGCGTAAACATGCA 60.160 45.455 0.00 0.00 0.00 3.96
2326 4256 2.587612 TTTCGAGCGTAAACATGCAC 57.412 45.000 0.00 0.00 0.00 4.57
2327 4257 0.436913 TTCGAGCGTAAACATGCACG 59.563 50.000 9.92 9.92 44.65 5.34
2331 4261 2.857448 CGTAAACATGCACGCGGT 59.143 55.556 12.47 0.00 0.00 5.68
2332 4262 1.205568 CGTAAACATGCACGCGGTT 59.794 52.632 12.47 0.58 0.00 4.44
2333 4263 0.384974 CGTAAACATGCACGCGGTTT 60.385 50.000 12.47 13.14 38.25 3.27
2334 4264 1.049251 GTAAACATGCACGCGGTTTG 58.951 50.000 12.47 0.00 36.29 2.93
2335 4265 0.039978 TAAACATGCACGCGGTTTGG 60.040 50.000 12.47 0.00 36.29 3.28
2336 4266 2.691674 AAACATGCACGCGGTTTGGG 62.692 55.000 12.47 0.00 33.78 4.12
2337 4267 3.669344 CATGCACGCGGTTTGGGT 61.669 61.111 12.47 0.00 46.00 4.51
2338 4268 3.361977 ATGCACGCGGTTTGGGTC 61.362 61.111 12.47 0.00 42.70 4.46
2348 4278 3.772281 TTTGGGTCGCGGCGGATA 61.772 61.111 23.46 0.00 0.00 2.59
2349 4279 3.726595 TTTGGGTCGCGGCGGATAG 62.727 63.158 23.46 0.00 0.00 2.08
2351 4281 3.289834 GGGTCGCGGCGGATAGTA 61.290 66.667 23.46 0.00 0.00 1.82
2352 4282 2.723746 GGTCGCGGCGGATAGTAA 59.276 61.111 23.46 0.00 0.00 2.24
2353 4283 1.066257 GGTCGCGGCGGATAGTAAA 59.934 57.895 23.46 0.00 0.00 2.01
2354 4284 1.211181 GGTCGCGGCGGATAGTAAAC 61.211 60.000 23.46 10.21 0.00 2.01
2355 4285 1.298563 TCGCGGCGGATAGTAAACG 60.299 57.895 23.46 0.00 0.00 3.60
2356 4286 2.297912 CGCGGCGGATAGTAAACGG 61.298 63.158 15.84 0.00 0.00 4.44
2357 4287 1.066257 GCGGCGGATAGTAAACGGA 59.934 57.895 9.78 0.00 0.00 4.69
2358 4288 1.211181 GCGGCGGATAGTAAACGGAC 61.211 60.000 9.78 0.00 0.00 4.79
2359 4289 0.931662 CGGCGGATAGTAAACGGACG 60.932 60.000 0.00 0.00 0.00 4.79
2360 4290 0.101219 GGCGGATAGTAAACGGACGT 59.899 55.000 0.00 0.00 0.00 4.34
2361 4291 1.470940 GCGGATAGTAAACGGACGTC 58.529 55.000 7.13 7.13 0.00 4.34
2362 4292 1.064654 GCGGATAGTAAACGGACGTCT 59.935 52.381 16.46 0.00 0.00 4.18
2363 4293 2.852522 GCGGATAGTAAACGGACGTCTC 60.853 54.545 16.46 4.72 0.00 3.36
2364 4294 2.598439 CGGATAGTAAACGGACGTCTCG 60.598 54.545 16.46 18.68 0.00 4.04
2365 4295 2.370515 GATAGTAAACGGACGTCTCGC 58.629 52.381 21.23 9.10 0.00 5.03
2366 4296 1.442769 TAGTAAACGGACGTCTCGCT 58.557 50.000 21.23 14.31 0.00 4.93
2367 4297 0.167689 AGTAAACGGACGTCTCGCTC 59.832 55.000 21.23 11.83 0.00 5.03
2368 4298 1.124702 GTAAACGGACGTCTCGCTCG 61.125 60.000 21.23 15.67 0.00 5.03
2369 4299 1.568612 TAAACGGACGTCTCGCTCGT 61.569 55.000 21.23 16.24 44.27 4.18
2406 4336 4.162690 CAGGCGGCCACCTACCTC 62.163 72.222 23.09 0.00 38.26 3.85
2410 4340 3.782443 CGGCCACCTACCTCCCAC 61.782 72.222 2.24 0.00 0.00 4.61
2411 4341 3.408853 GGCCACCTACCTCCCACC 61.409 72.222 0.00 0.00 0.00 4.61
2412 4342 3.782443 GCCACCTACCTCCCACCG 61.782 72.222 0.00 0.00 0.00 4.94
2413 4343 3.782443 CCACCTACCTCCCACCGC 61.782 72.222 0.00 0.00 0.00 5.68
2414 4344 3.782443 CACCTACCTCCCACCGCC 61.782 72.222 0.00 0.00 0.00 6.13
2418 4348 4.468769 TACCTCCCACCGCCCGAT 62.469 66.667 0.00 0.00 0.00 4.18
2419 4349 2.989173 CTACCTCCCACCGCCCGATA 62.989 65.000 0.00 0.00 0.00 2.92
2420 4350 2.376225 TACCTCCCACCGCCCGATAT 62.376 60.000 0.00 0.00 0.00 1.63
2421 4351 2.516888 CCTCCCACCGCCCGATATT 61.517 63.158 0.00 0.00 0.00 1.28
2422 4352 1.189524 CCTCCCACCGCCCGATATTA 61.190 60.000 0.00 0.00 0.00 0.98
2423 4353 0.682852 CTCCCACCGCCCGATATTAA 59.317 55.000 0.00 0.00 0.00 1.40
2424 4354 1.278127 CTCCCACCGCCCGATATTAAT 59.722 52.381 0.00 0.00 0.00 1.40
2425 4355 1.002659 TCCCACCGCCCGATATTAATG 59.997 52.381 0.00 0.00 0.00 1.90
2426 4356 0.802494 CCACCGCCCGATATTAATGC 59.198 55.000 0.00 0.00 0.00 3.56
2427 4357 1.518325 CACCGCCCGATATTAATGCA 58.482 50.000 0.00 0.00 0.00 3.96
2428 4358 1.196808 CACCGCCCGATATTAATGCAC 59.803 52.381 0.00 0.00 0.00 4.57
2429 4359 1.202710 ACCGCCCGATATTAATGCACA 60.203 47.619 0.00 0.00 0.00 4.57
2430 4360 1.196808 CCGCCCGATATTAATGCACAC 59.803 52.381 0.00 0.00 0.00 3.82
2431 4361 1.136363 CGCCCGATATTAATGCACACG 60.136 52.381 0.00 0.00 0.00 4.49
2432 4362 1.196808 GCCCGATATTAATGCACACGG 59.803 52.381 0.00 0.00 38.83 4.94
2434 4364 2.489971 CCGATATTAATGCACACGGGT 58.510 47.619 0.00 0.00 36.08 5.28
2436 4366 2.223144 CGATATTAATGCACACGGGTGG 59.777 50.000 21.41 0.88 45.38 4.61
2437 4367 2.791347 TATTAATGCACACGGGTGGT 57.209 45.000 21.41 0.00 45.38 4.16
2438 4368 1.459450 ATTAATGCACACGGGTGGTC 58.541 50.000 21.41 3.92 45.38 4.02
2439 4369 0.951525 TTAATGCACACGGGTGGTCG 60.952 55.000 21.41 0.00 45.38 4.79
2440 4370 2.789845 TAATGCACACGGGTGGTCGG 62.790 60.000 21.41 0.00 45.38 4.79
2451 4381 3.311110 TGGTCGGCTCCACCTGTC 61.311 66.667 0.00 0.00 34.66 3.51
2452 4382 3.311110 GGTCGGCTCCACCTGTCA 61.311 66.667 0.00 0.00 35.61 3.58
2453 4383 2.660064 GGTCGGCTCCACCTGTCAT 61.660 63.158 0.00 0.00 35.61 3.06
2454 4384 1.153549 GTCGGCTCCACCTGTCATC 60.154 63.158 0.00 0.00 35.61 2.92
2455 4385 2.187946 CGGCTCCACCTGTCATCC 59.812 66.667 0.00 0.00 35.61 3.51
2456 4386 2.187946 GGCTCCACCTGTCATCCG 59.812 66.667 0.00 0.00 34.51 4.18
2457 4387 2.512515 GCTCCACCTGTCATCCGC 60.513 66.667 0.00 0.00 0.00 5.54
2458 4388 2.187946 CTCCACCTGTCATCCGCC 59.812 66.667 0.00 0.00 0.00 6.13
2459 4389 3.391665 CTCCACCTGTCATCCGCCC 62.392 68.421 0.00 0.00 0.00 6.13
2460 4390 3.716195 CCACCTGTCATCCGCCCA 61.716 66.667 0.00 0.00 0.00 5.36
2461 4391 2.124983 CACCTGTCATCCGCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
2463 4393 4.864334 CCTGTCATCCGCCCAGGC 62.864 72.222 0.00 0.00 39.36 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.026718 GTGGCATGGAGAAGAACCCG 61.027 60.000 0.00 0.00 0.00 5.28
1 2 0.038166 TGTGGCATGGAGAAGAACCC 59.962 55.000 0.00 0.00 0.00 4.11
2 3 1.168714 GTGTGGCATGGAGAAGAACC 58.831 55.000 0.00 0.00 0.00 3.62
3 4 0.798776 CGTGTGGCATGGAGAAGAAC 59.201 55.000 0.00 0.00 0.00 3.01
4 5 0.684535 TCGTGTGGCATGGAGAAGAA 59.315 50.000 0.00 0.00 0.00 2.52
5 6 0.247460 CTCGTGTGGCATGGAGAAGA 59.753 55.000 6.57 0.00 0.00 2.87
6 7 0.742281 CCTCGTGTGGCATGGAGAAG 60.742 60.000 12.23 0.00 0.00 2.85
7 8 1.296392 CCTCGTGTGGCATGGAGAA 59.704 57.895 12.23 0.00 0.00 2.87
8 9 2.981302 CCTCGTGTGGCATGGAGA 59.019 61.111 12.23 0.62 0.00 3.71
16 17 2.689785 TACCGTACGCCTCGTGTGG 61.690 63.158 10.49 6.20 41.39 4.17
17 18 1.512734 GTACCGTACGCCTCGTGTG 60.513 63.158 10.49 0.00 41.39 3.82
18 19 1.514678 TTGTACCGTACGCCTCGTGT 61.515 55.000 10.49 3.67 41.39 4.49
19 20 1.067199 GTTGTACCGTACGCCTCGTG 61.067 60.000 10.49 0.00 41.39 4.35
20 21 1.210155 GTTGTACCGTACGCCTCGT 59.790 57.895 10.49 4.86 44.35 4.18
21 22 1.514873 GGTTGTACCGTACGCCTCG 60.515 63.158 10.49 0.00 0.00 4.63
22 23 0.174162 ATGGTTGTACCGTACGCCTC 59.826 55.000 10.49 2.35 42.58 4.70
23 24 0.174162 GATGGTTGTACCGTACGCCT 59.826 55.000 10.49 0.00 42.58 5.52
24 25 0.807275 GGATGGTTGTACCGTACGCC 60.807 60.000 10.49 5.00 42.58 5.68
25 26 2.669419 GGATGGTTGTACCGTACGC 58.331 57.895 10.49 0.00 42.58 4.42
27 28 2.877043 ATCGGATGGTTGTACCGTAC 57.123 50.000 0.00 1.40 42.58 3.67
28 29 3.286353 TGTATCGGATGGTTGTACCGTA 58.714 45.455 0.00 0.00 42.58 4.02
29 30 2.100252 CTGTATCGGATGGTTGTACCGT 59.900 50.000 0.00 0.00 42.58 4.83
30 31 2.739292 CTGTATCGGATGGTTGTACCG 58.261 52.381 0.00 0.00 42.58 4.02
31 32 2.159014 TGCTGTATCGGATGGTTGTACC 60.159 50.000 0.00 0.00 39.22 3.34
32 33 3.173668 TGCTGTATCGGATGGTTGTAC 57.826 47.619 0.00 0.00 0.00 2.90
33 34 4.557895 CGTATGCTGTATCGGATGGTTGTA 60.558 45.833 0.00 0.00 0.00 2.41
34 35 3.728845 GTATGCTGTATCGGATGGTTGT 58.271 45.455 0.00 0.00 0.00 3.32
35 36 2.731451 CGTATGCTGTATCGGATGGTTG 59.269 50.000 0.00 0.00 0.00 3.77
36 37 2.364324 ACGTATGCTGTATCGGATGGTT 59.636 45.455 0.00 0.00 0.00 3.67
37 38 1.961394 ACGTATGCTGTATCGGATGGT 59.039 47.619 0.00 0.00 0.00 3.55
38 39 2.288213 ACACGTATGCTGTATCGGATGG 60.288 50.000 0.00 0.00 0.00 3.51
39 40 2.726241 CACACGTATGCTGTATCGGATG 59.274 50.000 0.00 0.00 0.00 3.51
40 41 2.621526 TCACACGTATGCTGTATCGGAT 59.378 45.455 0.00 0.00 0.00 4.18
41 42 2.018515 TCACACGTATGCTGTATCGGA 58.981 47.619 0.00 0.00 0.00 4.55
42 43 2.117137 GTCACACGTATGCTGTATCGG 58.883 52.381 0.00 0.00 0.00 4.18
43 44 2.783832 CTGTCACACGTATGCTGTATCG 59.216 50.000 0.00 0.00 0.00 2.92
44 45 3.770666 ACTGTCACACGTATGCTGTATC 58.229 45.455 0.00 0.00 0.00 2.24
45 46 3.868757 ACTGTCACACGTATGCTGTAT 57.131 42.857 0.00 0.00 0.00 2.29
46 47 3.653539 AACTGTCACACGTATGCTGTA 57.346 42.857 0.00 0.00 0.00 2.74
47 48 2.526304 AACTGTCACACGTATGCTGT 57.474 45.000 0.00 0.00 0.00 4.40
48 49 3.240631 CGATAACTGTCACACGTATGCTG 59.759 47.826 0.00 0.00 0.00 4.41
49 50 3.435566 CGATAACTGTCACACGTATGCT 58.564 45.455 0.00 0.00 0.00 3.79
50 51 2.534349 CCGATAACTGTCACACGTATGC 59.466 50.000 0.00 0.00 0.00 3.14
51 52 2.534349 GCCGATAACTGTCACACGTATG 59.466 50.000 0.00 0.00 0.00 2.39
52 53 2.793585 CGCCGATAACTGTCACACGTAT 60.794 50.000 0.00 0.00 0.00 3.06
53 54 1.466192 CGCCGATAACTGTCACACGTA 60.466 52.381 0.00 0.00 0.00 3.57
54 55 0.731514 CGCCGATAACTGTCACACGT 60.732 55.000 0.00 0.00 0.00 4.49
55 56 0.731514 ACGCCGATAACTGTCACACG 60.732 55.000 0.00 0.00 0.00 4.49
56 57 0.989890 GACGCCGATAACTGTCACAC 59.010 55.000 0.00 0.00 0.00 3.82
57 58 0.108992 GGACGCCGATAACTGTCACA 60.109 55.000 0.00 0.00 33.04 3.58
58 59 0.172803 AGGACGCCGATAACTGTCAC 59.827 55.000 0.00 0.00 33.04 3.67
59 60 0.892755 AAGGACGCCGATAACTGTCA 59.107 50.000 0.00 0.00 33.04 3.58
60 61 2.857592 TAAGGACGCCGATAACTGTC 57.142 50.000 0.00 0.00 0.00 3.51
61 62 3.131577 TGATTAAGGACGCCGATAACTGT 59.868 43.478 0.00 0.00 0.00 3.55
62 63 3.713288 TGATTAAGGACGCCGATAACTG 58.287 45.455 0.00 0.00 0.00 3.16
63 64 4.602340 ATGATTAAGGACGCCGATAACT 57.398 40.909 0.00 0.00 0.00 2.24
64 65 5.163982 GCTAATGATTAAGGACGCCGATAAC 60.164 44.000 0.00 0.00 0.00 1.89
65 66 4.927425 GCTAATGATTAAGGACGCCGATAA 59.073 41.667 0.00 0.00 0.00 1.75
66 67 4.219944 AGCTAATGATTAAGGACGCCGATA 59.780 41.667 0.00 0.00 0.00 2.92
67 68 3.006967 AGCTAATGATTAAGGACGCCGAT 59.993 43.478 0.00 0.00 0.00 4.18
68 69 2.364324 AGCTAATGATTAAGGACGCCGA 59.636 45.455 0.00 0.00 0.00 5.54
69 70 2.476619 CAGCTAATGATTAAGGACGCCG 59.523 50.000 0.00 0.00 0.00 6.46
70 71 2.808543 CCAGCTAATGATTAAGGACGCC 59.191 50.000 0.00 0.00 0.00 5.68
71 72 3.248602 CACCAGCTAATGATTAAGGACGC 59.751 47.826 5.37 0.00 0.00 5.19
72 73 4.693283 TCACCAGCTAATGATTAAGGACG 58.307 43.478 5.37 0.00 0.00 4.79
73 74 5.059833 CCTCACCAGCTAATGATTAAGGAC 58.940 45.833 0.00 0.00 0.00 3.85
74 75 4.721776 ACCTCACCAGCTAATGATTAAGGA 59.278 41.667 4.36 0.00 0.00 3.36
75 76 5.041191 ACCTCACCAGCTAATGATTAAGG 57.959 43.478 0.00 1.35 0.00 2.69
76 77 5.698545 GCTACCTCACCAGCTAATGATTAAG 59.301 44.000 0.00 0.49 34.86 1.85
114 115 9.369904 CCAATACTGCAGCAAACTAAATAAATT 57.630 29.630 15.27 0.00 0.00 1.82
115 116 7.492344 GCCAATACTGCAGCAAACTAAATAAAT 59.508 33.333 15.27 0.00 0.00 1.40
165 166 0.104855 GCATGGACATCGAGGTAGCA 59.895 55.000 1.11 0.00 0.00 3.49
374 395 0.670162 CACAAGTTTCAGGCACCTGG 59.330 55.000 16.52 2.12 43.75 4.45
399 420 6.187682 CAAAGGGGTATCCAATCTTGTACTT 58.812 40.000 0.00 0.00 38.24 2.24
400 421 5.253096 ACAAAGGGGTATCCAATCTTGTACT 59.747 40.000 0.00 0.00 38.24 2.73
401 422 5.506708 ACAAAGGGGTATCCAATCTTGTAC 58.493 41.667 0.00 0.00 38.24 2.90
402 423 5.789574 ACAAAGGGGTATCCAATCTTGTA 57.210 39.130 0.00 0.00 38.24 2.41
403 424 4.675063 ACAAAGGGGTATCCAATCTTGT 57.325 40.909 0.00 0.00 38.24 3.16
404 425 5.755849 ACTACAAAGGGGTATCCAATCTTG 58.244 41.667 0.00 0.00 38.24 3.02
426 447 0.871057 GCAACTTCTCTGCACCTGAC 59.129 55.000 0.00 0.00 39.69 3.51
433 454 2.697654 ACAGATCTGCAACTTCTCTGC 58.302 47.619 22.83 0.00 37.45 4.26
444 465 2.680312 TGCCTTCAGTACAGATCTGC 57.320 50.000 22.83 7.43 33.48 4.26
475 496 3.059393 CACACAGCCAATATATCACAGCG 60.059 47.826 0.00 0.00 0.00 5.18
606 631 5.908341 ACTACCAGCTGAAAGTAGAATAGC 58.092 41.667 25.98 0.00 37.50 2.97
610 635 9.032624 AGTATTTACTACCAGCTGAAAGTAGAA 57.967 33.333 25.98 20.28 37.50 2.10
641 666 5.182487 CGTATGCTACCATTGGCCATAATA 58.818 41.667 6.09 0.00 32.85 0.98
646 671 0.544223 ACGTATGCTACCATTGGCCA 59.456 50.000 0.00 0.00 32.85 5.36
695 724 0.817654 ATCTGATGGCGAACGTCTGA 59.182 50.000 10.24 10.24 44.07 3.27
696 725 1.202348 AGATCTGATGGCGAACGTCTG 60.202 52.381 0.00 0.00 36.05 3.51
697 726 1.107114 AGATCTGATGGCGAACGTCT 58.893 50.000 0.00 0.00 36.05 4.18
698 727 2.033550 AGTAGATCTGATGGCGAACGTC 59.966 50.000 5.18 0.00 35.60 4.34
699 728 2.025155 AGTAGATCTGATGGCGAACGT 58.975 47.619 5.18 0.00 0.00 3.99
700 729 2.033424 TCAGTAGATCTGATGGCGAACG 59.967 50.000 5.18 0.00 46.77 3.95
701 730 3.717400 TCAGTAGATCTGATGGCGAAC 57.283 47.619 5.18 0.00 46.77 3.95
719 748 7.094805 GCAACTCTGTTTGTACCTGAATATTCA 60.095 37.037 17.07 17.07 35.57 2.57
720 749 7.094805 TGCAACTCTGTTTGTACCTGAATATTC 60.095 37.037 8.60 8.60 0.00 1.75
721 750 6.714810 TGCAACTCTGTTTGTACCTGAATATT 59.285 34.615 0.00 0.00 0.00 1.28
722 751 6.237901 TGCAACTCTGTTTGTACCTGAATAT 58.762 36.000 0.00 0.00 0.00 1.28
723 752 5.616270 TGCAACTCTGTTTGTACCTGAATA 58.384 37.500 0.00 0.00 0.00 1.75
724 753 4.460263 TGCAACTCTGTTTGTACCTGAAT 58.540 39.130 0.00 0.00 0.00 2.57
725 754 3.879998 TGCAACTCTGTTTGTACCTGAA 58.120 40.909 0.00 0.00 0.00 3.02
726 755 3.552132 TGCAACTCTGTTTGTACCTGA 57.448 42.857 0.00 0.00 0.00 3.86
786 815 4.091075 CGTCATCGATTATTGGAGATGCAG 59.909 45.833 0.00 0.00 40.01 4.41
871 900 1.202782 AGATAGCAATGGCAGCTCCTG 60.203 52.381 4.33 0.00 42.32 3.86
872 901 1.138568 AGATAGCAATGGCAGCTCCT 58.861 50.000 4.33 1.74 42.32 3.69
873 902 1.236628 CAGATAGCAATGGCAGCTCC 58.763 55.000 4.33 0.00 42.32 4.70
874 903 0.592148 GCAGATAGCAATGGCAGCTC 59.408 55.000 4.33 0.00 42.32 4.09
875 904 2.716814 GCAGATAGCAATGGCAGCT 58.283 52.632 6.48 6.48 44.61 4.24
1077 1112 2.505819 GTGCCATAGGAAGAAGGAAGGA 59.494 50.000 0.00 0.00 0.00 3.36
1158 1193 4.704833 TTGAGGGCGTGGCAGAGC 62.705 66.667 6.35 6.35 0.00 4.09
1203 1238 1.681486 GAGAGGTAGCTGTGGGAGGC 61.681 65.000 0.00 0.00 0.00 4.70
1210 1245 1.687493 GCTGGGGAGAGGTAGCTGT 60.687 63.158 0.00 0.00 33.53 4.40
1285 1320 6.261826 AGAGCAAATAACAAGGTAGATCATGC 59.738 38.462 0.00 0.00 0.00 4.06
1314 1360 1.347707 TCAGTCCACCACATGAACTCC 59.652 52.381 0.00 0.00 0.00 3.85
1423 1469 3.071206 GGAGCACGAGGCCTCTGA 61.071 66.667 29.73 0.00 46.50 3.27
1507 1553 0.038890 TTCCCATGGCCGTTTCATCA 59.961 50.000 6.09 0.00 0.00 3.07
1508 1554 1.181786 TTTCCCATGGCCGTTTCATC 58.818 50.000 6.09 0.00 0.00 2.92
1509 1555 1.864669 ATTTCCCATGGCCGTTTCAT 58.135 45.000 6.09 0.00 0.00 2.57
1518 1564 1.402968 CACTCAGCGAATTTCCCATGG 59.597 52.381 4.14 4.14 0.00 3.66
1525 1571 4.576463 AGAAAGAACACACTCAGCGAATTT 59.424 37.500 0.00 0.00 0.00 1.82
1576 1622 2.233431 AGATGGAAGCACTCACTCAGTC 59.767 50.000 0.00 0.00 30.26 3.51
1577 1623 2.233431 GAGATGGAAGCACTCACTCAGT 59.767 50.000 0.00 0.00 34.67 3.41
1578 1624 2.496871 AGAGATGGAAGCACTCACTCAG 59.503 50.000 0.00 0.00 33.69 3.35
1579 1625 2.533916 AGAGATGGAAGCACTCACTCA 58.466 47.619 0.00 0.00 33.69 3.41
1580 1626 3.056250 TGAAGAGATGGAAGCACTCACTC 60.056 47.826 0.00 0.00 33.69 3.51
1581 1627 2.902486 TGAAGAGATGGAAGCACTCACT 59.098 45.455 0.00 0.00 33.69 3.41
1582 1628 3.325293 TGAAGAGATGGAAGCACTCAC 57.675 47.619 0.00 0.00 33.69 3.51
1583 1629 3.262660 ACATGAAGAGATGGAAGCACTCA 59.737 43.478 0.00 0.00 33.69 3.41
1631 1678 1.336440 CAAACAATGTGTCCGGCTTGA 59.664 47.619 0.00 0.00 0.00 3.02
1634 1681 3.109847 ACAAACAATGTGTCCGGCT 57.890 47.368 0.00 0.00 41.93 5.52
1656 1703 1.442769 CATTGTAAGCTGAGGTGCGT 58.557 50.000 0.00 0.00 38.13 5.24
1662 1709 6.744537 GTGTGAAATTAGCATTGTAAGCTGAG 59.255 38.462 0.00 0.00 43.33 3.35
1693 1744 0.898320 CTTGGAGACATGGACCGACT 59.102 55.000 0.00 0.00 42.32 4.18
1698 1749 4.543590 TTCTTCTCTTGGAGACATGGAC 57.456 45.455 0.00 0.00 38.51 4.02
1699 1750 5.768980 ATTTCTTCTCTTGGAGACATGGA 57.231 39.130 0.00 0.00 38.51 3.41
1700 1751 5.521735 CGTATTTCTTCTCTTGGAGACATGG 59.478 44.000 0.00 0.00 38.51 3.66
1703 1754 4.081642 CCCGTATTTCTTCTCTTGGAGACA 60.082 45.833 0.00 0.00 38.51 3.41
1705 1756 4.350245 TCCCGTATTTCTTCTCTTGGAGA 58.650 43.478 0.00 0.00 36.86 3.71
1706 1757 4.160626 ACTCCCGTATTTCTTCTCTTGGAG 59.839 45.833 0.00 0.00 41.99 3.86
1707 1758 4.081642 CACTCCCGTATTTCTTCTCTTGGA 60.082 45.833 0.00 0.00 0.00 3.53
1708 1759 4.081642 TCACTCCCGTATTTCTTCTCTTGG 60.082 45.833 0.00 0.00 0.00 3.61
1711 1762 5.187967 ACATTCACTCCCGTATTTCTTCTCT 59.812 40.000 0.00 0.00 0.00 3.10
1744 2085 4.365899 AGAACAAACCCGAGAACAAAAC 57.634 40.909 0.00 0.00 0.00 2.43
1755 2096 3.955551 TGGAAAGTGGTAAGAACAAACCC 59.044 43.478 0.00 0.00 34.69 4.11
1818 3728 9.487790 TTTTCTGTTTTGAAATGAACAAACTCT 57.512 25.926 0.00 0.00 37.05 3.24
1854 3764 1.619654 TGGGACAAATGACTTGGCAG 58.380 50.000 0.00 0.00 45.98 4.85
1988 3900 8.812972 AGAGTAATATTACACAGAACTTGACCA 58.187 33.333 24.05 0.00 36.12 4.02
2053 3982 0.320421 CGGAGAACTTGCCCGAGAAA 60.320 55.000 0.00 0.00 45.58 2.52
2054 3983 1.292223 CGGAGAACTTGCCCGAGAA 59.708 57.895 0.00 0.00 45.58 2.87
2071 4000 7.481642 AGTTGTCTGACCAGAGTAATATTACG 58.518 38.462 17.77 8.01 38.27 3.18
2091 4020 5.598417 AGAACTTGCCCAATAAAAGAGTTGT 59.402 36.000 0.00 0.00 0.00 3.32
2097 4026 5.712152 ACAGAGAACTTGCCCAATAAAAG 57.288 39.130 0.00 0.00 0.00 2.27
2108 4038 7.439655 GGCCAGAGTAATATTACAGAGAACTTG 59.560 40.741 24.05 11.34 36.12 3.16
2143 4073 1.002544 AGAGAACTTGCCCGAGGAAAG 59.997 52.381 8.65 8.65 0.00 2.62
2185 4115 0.798776 GAGGTCGCACATTGGAGTTG 59.201 55.000 0.00 0.00 0.00 3.16
2186 4116 0.396435 TGAGGTCGCACATTGGAGTT 59.604 50.000 0.00 0.00 0.00 3.01
2187 4117 0.615331 ATGAGGTCGCACATTGGAGT 59.385 50.000 0.00 0.00 0.00 3.85
2188 4118 1.293924 GATGAGGTCGCACATTGGAG 58.706 55.000 0.00 0.00 0.00 3.86
2189 4119 0.107703 GGATGAGGTCGCACATTGGA 60.108 55.000 0.00 0.00 0.00 3.53
2190 4120 1.097547 GGGATGAGGTCGCACATTGG 61.098 60.000 0.00 0.00 39.45 3.16
2191 4121 1.431488 CGGGATGAGGTCGCACATTG 61.431 60.000 0.00 0.00 39.62 2.82
2192 4122 1.153369 CGGGATGAGGTCGCACATT 60.153 57.895 0.00 0.00 39.62 2.71
2193 4123 2.298158 GACGGGATGAGGTCGCACAT 62.298 60.000 0.00 0.00 39.62 3.21
2194 4124 2.994995 ACGGGATGAGGTCGCACA 60.995 61.111 0.00 0.00 39.62 4.57
2195 4125 2.202756 GACGGGATGAGGTCGCAC 60.203 66.667 0.00 0.00 39.62 5.34
2196 4126 3.458163 GGACGGGATGAGGTCGCA 61.458 66.667 0.00 0.00 39.62 5.10
2197 4127 4.570663 CGGACGGGATGAGGTCGC 62.571 72.222 0.00 0.00 33.99 5.19
2198 4128 3.900892 CCGGACGGGATGAGGTCG 61.901 72.222 0.00 0.00 38.47 4.79
2199 4129 4.222847 GCCGGACGGGATGAGGTC 62.223 72.222 5.05 0.00 38.47 3.85
2224 4154 3.119209 TGGTTGTTCGTTTTACCCCAAAC 60.119 43.478 0.00 0.00 33.90 2.93
2225 4155 3.094572 TGGTTGTTCGTTTTACCCCAAA 58.905 40.909 0.00 0.00 0.00 3.28
2226 4156 2.688958 CTGGTTGTTCGTTTTACCCCAA 59.311 45.455 0.00 0.00 0.00 4.12
2227 4157 2.092538 TCTGGTTGTTCGTTTTACCCCA 60.093 45.455 0.00 0.00 0.00 4.96
2228 4158 2.291465 GTCTGGTTGTTCGTTTTACCCC 59.709 50.000 0.00 0.00 0.00 4.95
2229 4159 2.032636 CGTCTGGTTGTTCGTTTTACCC 60.033 50.000 0.00 0.00 0.00 3.69
2230 4160 2.032636 CCGTCTGGTTGTTCGTTTTACC 60.033 50.000 0.00 0.00 0.00 2.85
2231 4161 3.243226 CCGTCTGGTTGTTCGTTTTAC 57.757 47.619 0.00 0.00 0.00 2.01
2244 4174 4.803426 GCGCTCTGGACCGTCTGG 62.803 72.222 0.00 0.00 42.84 3.86
2261 4191 3.622060 AAATGGGTCCAGGCCGTCG 62.622 63.158 0.00 0.00 0.00 5.12
2262 4192 2.046285 CAAATGGGTCCAGGCCGTC 61.046 63.158 0.00 0.00 0.00 4.79
2263 4193 1.863155 ATCAAATGGGTCCAGGCCGT 61.863 55.000 0.00 0.00 0.00 5.68
2264 4194 1.076777 ATCAAATGGGTCCAGGCCG 60.077 57.895 0.00 0.00 0.00 6.13
2265 4195 0.756815 GGATCAAATGGGTCCAGGCC 60.757 60.000 0.00 0.00 32.23 5.19
2266 4196 1.103398 CGGATCAAATGGGTCCAGGC 61.103 60.000 0.00 0.00 32.23 4.85
2267 4197 0.255890 ACGGATCAAATGGGTCCAGG 59.744 55.000 0.00 0.00 32.23 4.45
2268 4198 2.128771 AACGGATCAAATGGGTCCAG 57.871 50.000 0.00 0.00 32.23 3.86
2269 4199 2.560542 CAAAACGGATCAAATGGGTCCA 59.439 45.455 0.00 0.00 32.23 4.02
2270 4200 2.560981 ACAAAACGGATCAAATGGGTCC 59.439 45.455 0.00 0.00 0.00 4.46
2271 4201 3.005367 ACACAAAACGGATCAAATGGGTC 59.995 43.478 0.00 0.00 0.00 4.46
2272 4202 2.962421 ACACAAAACGGATCAAATGGGT 59.038 40.909 0.00 0.00 0.00 4.51
2273 4203 3.574614 GACACAAAACGGATCAAATGGG 58.425 45.455 0.00 0.00 0.00 4.00
2274 4204 3.574614 GGACACAAAACGGATCAAATGG 58.425 45.455 0.00 0.00 0.00 3.16
2275 4205 3.233578 CGGACACAAAACGGATCAAATG 58.766 45.455 0.00 0.00 0.00 2.32
2276 4206 3.552604 CGGACACAAAACGGATCAAAT 57.447 42.857 0.00 0.00 0.00 2.32
2283 4213 2.600475 CGACCCGGACACAAAACGG 61.600 63.158 0.73 0.00 46.79 4.44
2284 4214 1.592131 TCGACCCGGACACAAAACG 60.592 57.895 0.73 0.00 0.00 3.60
2285 4215 1.501337 GGTCGACCCGGACACAAAAC 61.501 60.000 24.75 0.00 38.70 2.43
2286 4216 1.227615 GGTCGACCCGGACACAAAA 60.228 57.895 24.75 0.00 38.70 2.44
2287 4217 2.422591 GGTCGACCCGGACACAAA 59.577 61.111 24.75 0.00 38.70 2.83
2297 4227 2.165301 CGCTCGAAATGGGTCGACC 61.165 63.158 27.04 27.04 44.76 4.79
2298 4228 0.179156 TACGCTCGAAATGGGTCGAC 60.179 55.000 7.13 7.13 44.76 4.20
2300 4230 1.060122 GTTTACGCTCGAAATGGGTCG 59.940 52.381 0.00 0.00 42.48 4.79
2301 4231 2.070783 TGTTTACGCTCGAAATGGGTC 58.929 47.619 0.00 0.00 32.83 4.46
2302 4232 2.172851 TGTTTACGCTCGAAATGGGT 57.827 45.000 0.00 0.00 34.92 4.51
2303 4233 2.791158 GCATGTTTACGCTCGAAATGGG 60.791 50.000 0.00 0.00 0.00 4.00
2304 4234 2.159585 TGCATGTTTACGCTCGAAATGG 60.160 45.455 0.00 0.00 0.00 3.16
2305 4235 2.840176 GTGCATGTTTACGCTCGAAATG 59.160 45.455 0.00 0.00 0.00 2.32
2306 4236 2.473868 CGTGCATGTTTACGCTCGAAAT 60.474 45.455 0.00 0.00 45.21 2.17
2307 4237 1.136474 CGTGCATGTTTACGCTCGAAA 60.136 47.619 0.00 0.00 45.21 3.46
2308 4238 0.436913 CGTGCATGTTTACGCTCGAA 59.563 50.000 0.00 0.00 45.21 3.71
2309 4239 2.066807 CGTGCATGTTTACGCTCGA 58.933 52.632 0.00 0.00 45.21 4.04
2310 4240 4.624747 CGTGCATGTTTACGCTCG 57.375 55.556 0.00 0.00 38.54 5.03
2314 4244 0.384974 AAACCGCGTGCATGTTTACG 60.385 50.000 4.92 12.72 42.79 3.18
2315 4245 1.049251 CAAACCGCGTGCATGTTTAC 58.951 50.000 4.92 0.00 31.40 2.01
2316 4246 0.039978 CCAAACCGCGTGCATGTTTA 60.040 50.000 4.92 0.00 31.40 2.01
2317 4247 1.299773 CCAAACCGCGTGCATGTTT 60.300 52.632 4.92 4.88 32.70 2.83
2318 4248 2.334653 CCAAACCGCGTGCATGTT 59.665 55.556 4.92 0.00 0.00 2.71
2319 4249 3.669344 CCCAAACCGCGTGCATGT 61.669 61.111 4.92 0.00 0.00 3.21
2320 4250 3.609214 GACCCAAACCGCGTGCATG 62.609 63.158 4.92 0.09 0.00 4.06
2321 4251 3.361977 GACCCAAACCGCGTGCAT 61.362 61.111 4.92 0.00 0.00 3.96
2331 4261 3.726595 CTATCCGCCGCGACCCAAA 62.727 63.158 15.93 0.00 0.00 3.28
2332 4262 4.215742 CTATCCGCCGCGACCCAA 62.216 66.667 15.93 0.00 0.00 4.12
2334 4264 2.354074 TTTACTATCCGCCGCGACCC 62.354 60.000 15.93 0.00 0.00 4.46
2335 4265 1.066257 TTTACTATCCGCCGCGACC 59.934 57.895 15.93 0.00 0.00 4.79
2336 4266 1.534811 CGTTTACTATCCGCCGCGAC 61.535 60.000 15.93 0.00 0.00 5.19
2337 4267 1.298563 CGTTTACTATCCGCCGCGA 60.299 57.895 15.93 0.32 0.00 5.87
2338 4268 2.297912 CCGTTTACTATCCGCCGCG 61.298 63.158 5.59 5.59 0.00 6.46
2339 4269 1.066257 TCCGTTTACTATCCGCCGC 59.934 57.895 0.00 0.00 0.00 6.53
2340 4270 0.931662 CGTCCGTTTACTATCCGCCG 60.932 60.000 0.00 0.00 0.00 6.46
2341 4271 0.101219 ACGTCCGTTTACTATCCGCC 59.899 55.000 0.00 0.00 0.00 6.13
2342 4272 1.064654 AGACGTCCGTTTACTATCCGC 59.935 52.381 13.01 0.00 0.00 5.54
2343 4273 2.598439 CGAGACGTCCGTTTACTATCCG 60.598 54.545 13.01 0.00 0.00 4.18
2344 4274 2.852522 GCGAGACGTCCGTTTACTATCC 60.853 54.545 21.74 4.52 0.00 2.59
2345 4275 2.031437 AGCGAGACGTCCGTTTACTATC 59.969 50.000 21.74 6.88 0.00 2.08
2346 4276 2.012673 AGCGAGACGTCCGTTTACTAT 58.987 47.619 21.74 0.00 0.00 2.12
2347 4277 1.394917 GAGCGAGACGTCCGTTTACTA 59.605 52.381 21.74 0.00 0.00 1.82
2348 4278 0.167689 GAGCGAGACGTCCGTTTACT 59.832 55.000 21.74 13.26 0.00 2.24
2349 4279 1.124702 CGAGCGAGACGTCCGTTTAC 61.125 60.000 21.74 9.72 0.00 2.01
2350 4280 1.133253 CGAGCGAGACGTCCGTTTA 59.867 57.895 21.74 0.00 0.00 2.01
2351 4281 2.126965 CGAGCGAGACGTCCGTTT 60.127 61.111 21.74 13.63 0.00 3.60
2352 4282 3.352222 ACGAGCGAGACGTCCGTT 61.352 61.111 21.74 17.95 39.87 4.44
2389 4319 4.162690 GAGGTAGGTGGCCGCCTG 62.163 72.222 42.20 0.00 39.60 4.85
2393 4323 3.782443 GTGGGAGGTAGGTGGCCG 61.782 72.222 0.00 0.00 0.00 6.13
2394 4324 3.408853 GGTGGGAGGTAGGTGGCC 61.409 72.222 0.00 0.00 0.00 5.36
2395 4325 3.782443 CGGTGGGAGGTAGGTGGC 61.782 72.222 0.00 0.00 0.00 5.01
2396 4326 3.782443 GCGGTGGGAGGTAGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
2397 4327 3.782443 GGCGGTGGGAGGTAGGTG 61.782 72.222 0.00 0.00 0.00 4.00
2400 4330 2.989173 TATCGGGCGGTGGGAGGTAG 62.989 65.000 0.00 0.00 0.00 3.18
2401 4331 2.376225 ATATCGGGCGGTGGGAGGTA 62.376 60.000 0.00 0.00 0.00 3.08
2402 4332 3.768833 ATATCGGGCGGTGGGAGGT 62.769 63.158 0.00 0.00 0.00 3.85
2403 4333 1.189524 TAATATCGGGCGGTGGGAGG 61.190 60.000 0.00 0.00 0.00 4.30
2404 4334 0.682852 TTAATATCGGGCGGTGGGAG 59.317 55.000 0.00 0.00 0.00 4.30
2405 4335 1.002659 CATTAATATCGGGCGGTGGGA 59.997 52.381 0.00 0.00 0.00 4.37
2406 4336 1.448985 CATTAATATCGGGCGGTGGG 58.551 55.000 0.00 0.00 0.00 4.61
2407 4337 0.802494 GCATTAATATCGGGCGGTGG 59.198 55.000 0.00 0.00 0.00 4.61
2408 4338 1.196808 GTGCATTAATATCGGGCGGTG 59.803 52.381 0.00 0.00 0.00 4.94
2409 4339 1.202710 TGTGCATTAATATCGGGCGGT 60.203 47.619 0.00 0.00 0.00 5.68
2410 4340 1.196808 GTGTGCATTAATATCGGGCGG 59.803 52.381 0.00 0.00 0.00 6.13
2411 4341 1.136363 CGTGTGCATTAATATCGGGCG 60.136 52.381 0.00 0.00 0.00 6.13
2412 4342 1.196808 CCGTGTGCATTAATATCGGGC 59.803 52.381 0.00 0.00 34.05 6.13
2414 4344 2.223144 CACCCGTGTGCATTAATATCGG 59.777 50.000 0.00 0.00 35.31 4.18
2415 4345 2.223144 CCACCCGTGTGCATTAATATCG 59.777 50.000 0.00 0.00 41.35 2.92
2416 4346 3.211045 ACCACCCGTGTGCATTAATATC 58.789 45.455 0.00 0.00 41.35 1.63
2417 4347 3.211045 GACCACCCGTGTGCATTAATAT 58.789 45.455 0.00 0.00 41.35 1.28
2418 4348 2.634600 GACCACCCGTGTGCATTAATA 58.365 47.619 0.00 0.00 41.35 0.98
2419 4349 1.459450 GACCACCCGTGTGCATTAAT 58.541 50.000 0.00 0.00 41.35 1.40
2420 4350 0.951525 CGACCACCCGTGTGCATTAA 60.952 55.000 0.00 0.00 41.35 1.40
2421 4351 1.374885 CGACCACCCGTGTGCATTA 60.375 57.895 0.00 0.00 41.35 1.90
2422 4352 2.668212 CGACCACCCGTGTGCATT 60.668 61.111 0.00 0.00 41.35 3.56
2423 4353 4.697756 CCGACCACCCGTGTGCAT 62.698 66.667 0.00 0.00 41.35 3.96
2434 4364 3.311110 GACAGGTGGAGCCGACCA 61.311 66.667 8.61 0.64 43.70 4.02
2435 4365 2.579684 GATGACAGGTGGAGCCGACC 62.580 65.000 0.00 0.00 43.70 4.79
2436 4366 1.153549 GATGACAGGTGGAGCCGAC 60.154 63.158 0.00 0.00 43.70 4.79
2437 4367 2.359169 GGATGACAGGTGGAGCCGA 61.359 63.158 0.00 0.00 43.70 5.54
2438 4368 2.187946 GGATGACAGGTGGAGCCG 59.812 66.667 0.00 0.00 43.70 5.52
2439 4369 2.187946 CGGATGACAGGTGGAGCC 59.812 66.667 0.00 0.00 37.58 4.70
2440 4370 2.512515 GCGGATGACAGGTGGAGC 60.513 66.667 0.00 0.00 0.00 4.70
2441 4371 2.187946 GGCGGATGACAGGTGGAG 59.812 66.667 0.00 0.00 0.00 3.86
2442 4372 3.399181 GGGCGGATGACAGGTGGA 61.399 66.667 0.00 0.00 0.00 4.02
2443 4373 3.687321 CTGGGCGGATGACAGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
2444 4374 2.124983 CTGGGCGGATGACAGGTG 60.125 66.667 0.00 0.00 0.00 4.00
2445 4375 3.402681 CCTGGGCGGATGACAGGT 61.403 66.667 0.00 0.00 45.21 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.